Query psy15942
Match_columns 211
No_of_seqs 173 out of 1573
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 17:02:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 99.9 2.2E-26 4.7E-31 175.0 14.8 130 43-174 4-137 (138)
2 KOG1718|consensus 99.9 3.4E-26 7.4E-31 175.0 13.2 144 43-188 20-169 (198)
3 PF00782 DSPc: Dual specificit 99.9 3.3E-26 7E-31 172.8 11.0 127 49-175 2-133 (133)
4 KOG1717|consensus 99.9 7.8E-26 1.7E-30 184.3 11.9 145 32-181 168-317 (343)
5 cd00127 DSPc Dual specificity 99.9 1.2E-24 2.6E-29 165.1 14.2 130 43-173 5-139 (139)
6 KOG1716|consensus 99.9 1.8E-24 3.8E-29 183.5 16.1 140 43-183 78-223 (285)
7 PTZ00393 protein tyrosine phos 99.9 3.9E-24 8.4E-29 174.3 13.9 121 60-182 113-235 (241)
8 PTZ00242 protein tyrosine phos 99.9 5.6E-24 1.2E-28 167.0 13.9 120 60-180 37-162 (166)
9 KOG1720|consensus 99.9 1E-22 2.2E-27 161.2 13.5 113 61-174 92-206 (225)
10 KOG1719|consensus 99.9 5.9E-22 1.3E-26 149.8 10.7 104 77-180 70-174 (183)
11 PRK12361 hypothetical protein; 99.9 1.5E-21 3.2E-26 179.1 15.4 134 43-177 98-238 (547)
12 COG2453 CDC14 Predicted protei 99.8 2.2E-18 4.8E-23 137.0 13.1 102 77-178 67-169 (180)
13 KOG2836|consensus 99.7 2.1E-16 4.6E-21 117.1 12.7 115 59-175 37-155 (173)
14 smart00404 PTPc_motif Protein 99.6 1.9E-14 4E-19 103.2 11.2 88 84-171 4-101 (105)
15 smart00012 PTPc_DSPc Protein t 99.6 1.9E-14 4E-19 103.2 11.2 88 84-171 4-101 (105)
16 cd00047 PTPc Protein tyrosine 99.6 3.1E-14 6.8E-19 117.0 10.6 90 82-171 129-227 (231)
17 smart00194 PTPc Protein tyrosi 99.5 3E-14 6.4E-19 119.1 9.9 88 84-171 160-254 (258)
18 PF05706 CDKN3: Cyclin-depende 99.5 3.1E-14 6.7E-19 110.3 8.0 73 77-149 95-168 (168)
19 PRK15375 pathogenicity island 99.5 2.7E-13 5.8E-18 120.7 11.4 94 84-177 425-530 (535)
20 PHA02740 protein tyrosine phos 99.5 3E-13 6.5E-18 115.4 10.7 89 83-171 179-282 (298)
21 PHA02747 protein tyrosine phos 99.4 6.2E-13 1.3E-17 114.3 9.9 86 84-169 186-288 (312)
22 PHA02742 protein tyrosine phos 99.4 8.5E-13 1.9E-17 113.0 10.1 87 84-170 185-289 (303)
23 PHA02738 hypothetical protein; 99.4 1.2E-12 2.7E-17 112.8 10.7 88 84-171 181-288 (320)
24 PHA02746 protein tyrosine phos 99.4 2.1E-12 4.6E-17 111.4 10.3 89 84-172 204-309 (323)
25 KOG0792|consensus 99.3 8E-12 1.7E-16 118.1 9.6 123 49-171 993-1124(1144)
26 KOG0790|consensus 99.3 2.8E-12 6.1E-17 111.7 4.7 93 78-170 410-514 (600)
27 PF00102 Y_phosphatase: Protei 99.3 2E-11 4.4E-16 99.6 8.3 89 84-172 137-232 (235)
28 PF03162 Y_phosphatase2: Tyros 99.2 1.5E-10 3.2E-15 90.7 8.4 130 47-180 13-154 (164)
29 COG5599 PTP2 Protein tyrosine 99.1 1.3E-10 2.8E-15 95.6 6.4 92 83-177 185-294 (302)
30 PF14566 PTPlike_phytase: Inos 99.1 1.8E-10 4E-15 88.8 6.2 61 78-139 88-148 (149)
31 KOG0791|consensus 99.1 8.8E-10 1.9E-14 94.4 9.5 99 82-180 252-358 (374)
32 KOG2283|consensus 99.0 2.1E-09 4.6E-14 95.6 9.5 93 83-175 73-173 (434)
33 KOG4228|consensus 99.0 5.9E-10 1.3E-14 106.4 5.6 120 49-170 660-790 (1087)
34 COG5350 Predicted protein tyro 98.9 1.1E-08 2.4E-13 77.8 7.9 75 94-169 73-148 (172)
35 TIGR01244 conserved hypothetic 98.8 5.1E-08 1.1E-12 73.9 11.0 93 60-158 24-127 (135)
36 KOG0793|consensus 98.8 1E-08 2.2E-13 93.9 5.9 91 80-170 890-988 (1004)
37 KOG0789|consensus 98.7 4.6E-08 1E-12 86.8 8.9 90 83-172 265-362 (415)
38 KOG4228|consensus 98.6 2.1E-08 4.7E-13 95.9 4.3 90 82-171 983-1079(1087)
39 KOG2386|consensus 98.5 1.8E-07 3.8E-12 81.8 7.0 104 74-177 78-186 (393)
40 PLN02727 NAD kinase 98.5 4.8E-07 1E-11 86.1 10.3 83 60-144 278-370 (986)
41 PF13350 Y_phosphatase3: Tyros 98.3 3.1E-06 6.7E-11 66.1 8.1 91 60-151 39-159 (164)
42 COG2365 Protein tyrosine/serin 98.1 1.1E-05 2.3E-10 67.4 8.3 61 103-163 123-184 (249)
43 PF04273 DUF442: Putative phos 98.0 2.2E-05 4.7E-10 57.5 6.2 72 60-136 24-106 (110)
44 KOG1572|consensus 97.8 0.00028 6.1E-09 57.7 10.2 116 61-180 83-211 (249)
45 PF04179 Init_tRNA_PT: Initiat 97.8 0.00022 4.7E-09 64.3 10.1 93 80-172 336-449 (451)
46 COG3453 Uncharacterized protei 97.3 0.0026 5.7E-08 46.8 8.4 69 79-153 55-123 (130)
47 PF14671 DSPn: Dual specificit 96.7 0.0061 1.3E-07 46.5 6.2 67 91-157 39-112 (141)
48 KOG4471|consensus 96.0 0.014 3.1E-07 53.5 5.6 36 102-137 361-396 (717)
49 PF06602 Myotub-related: Myotu 92.6 0.31 6.8E-06 42.8 6.0 24 113-136 229-252 (353)
50 KOG1089|consensus 90.8 0.58 1.3E-05 43.3 5.8 29 108-136 336-365 (573)
51 PLN02160 thiosulfate sulfurtra 80.5 2.4 5.2E-05 31.8 3.6 29 113-144 79-107 (136)
52 TIGR03865 PQQ_CXXCW PQQ-depend 79.9 5.8 0.00013 30.7 5.7 28 114-143 115-142 (162)
53 cd01533 4RHOD_Repeat_2 Member 79.8 4.9 0.00011 28.4 5.0 27 114-143 65-91 (109)
54 cd01518 RHOD_YceA Member of th 79.7 2.6 5.7E-05 29.4 3.5 29 113-144 59-87 (101)
55 PF05570 DUF765: Circovirus pr 76.5 1.7 3.7E-05 22.9 1.2 22 1-22 1-22 (29)
56 PF00581 Rhodanese: Rhodanese- 73.8 15 0.00033 25.4 6.2 58 86-144 34-98 (113)
57 cd01520 RHOD_YbbB Member of th 71.7 11 0.00024 27.6 5.1 30 113-144 84-113 (128)
58 cd01523 RHOD_Lact_B Member of 71.7 5 0.00011 27.8 3.1 29 113-144 59-87 (100)
59 COG0607 PspE Rhodanese-related 70.7 5.3 0.00012 27.8 3.1 30 112-144 58-87 (110)
60 cd01448 TST_Repeat_1 Thiosulfa 69.2 10 0.00022 27.2 4.5 29 114-144 78-106 (122)
61 TIGR03642 cas_csx13 CRISPR-ass 68.8 14 0.00031 27.4 5.1 61 82-142 53-116 (124)
62 PF03668 ATP_bind_2: P-loop AT 67.6 12 0.00027 31.8 5.1 17 117-133 244-260 (284)
63 cd01522 RHOD_1 Member of the R 67.5 11 0.00023 27.3 4.2 28 113-143 62-89 (117)
64 cd01528 RHOD_2 Member of the R 67.1 14 0.00031 25.5 4.7 28 114-144 57-84 (101)
65 COG1660 Predicted P-loop-conta 66.0 12 0.00026 31.6 4.6 17 117-133 245-261 (286)
66 PRK05416 glmZ(sRNA)-inactivati 64.9 13 0.00029 31.6 4.9 33 101-133 224-263 (288)
67 cd01532 4RHOD_Repeat_1 Member 63.0 15 0.00033 25.1 4.1 28 115-143 50-77 (92)
68 PF03861 ANTAR: ANTAR domain; 59.7 12 0.00026 23.4 2.9 24 132-155 17-40 (56)
69 PRK10886 DnaA initiator-associ 59.2 31 0.00067 27.7 5.8 36 99-137 25-60 (196)
70 PF02673 BacA: Bacitracin resi 58.7 11 0.00023 31.8 3.1 27 123-151 159-185 (259)
71 PRK05320 rhodanese superfamily 58.2 27 0.00058 29.3 5.4 28 114-144 174-201 (257)
72 PRK00142 putative rhodanese-re 57.7 22 0.00048 30.7 5.0 28 114-144 170-197 (314)
73 COG0794 GutQ Predicted sugar p 56.9 28 0.0006 28.2 5.1 26 113-141 37-62 (202)
74 PRK05772 translation initiatio 56.7 28 0.00061 30.8 5.5 13 114-126 166-178 (363)
75 PRK12554 undecaprenyl pyrophos 56.3 12 0.00026 31.8 3.1 26 124-151 166-191 (276)
76 smart00400 ZnF_CHCC zinc finge 55.1 17 0.00037 22.6 3.0 32 119-152 23-54 (55)
77 TIGR00753 undec_PP_bacA undeca 55.1 13 0.00029 31.1 3.1 26 124-151 160-185 (255)
78 cd01525 RHOD_Kc Member of the 53.9 22 0.00047 24.6 3.7 26 115-143 65-90 (105)
79 TIGR00853 pts-lac PTS system, 53.9 12 0.00027 26.3 2.4 62 115-178 3-73 (95)
80 PRK00281 undecaprenyl pyrophos 53.5 14 0.00031 31.1 3.1 26 124-151 164-189 (268)
81 PRK01415 hypothetical protein; 53.4 35 0.00075 28.5 5.3 29 113-144 169-197 (247)
82 cd01443 Cdc25_Acr2p Cdc25 enzy 53.3 42 0.0009 23.8 5.2 19 115-133 66-84 (113)
83 cd01529 4RHOD_Repeats Member o 53.1 18 0.0004 24.7 3.2 28 113-143 54-81 (96)
84 cd01447 Polysulfide_ST Polysul 53.0 19 0.00041 24.7 3.2 28 113-143 59-86 (103)
85 PRK13938 phosphoheptose isomer 52.6 42 0.00091 26.9 5.6 41 96-139 26-66 (196)
86 cd01534 4RHOD_Repeat_3 Member 52.3 22 0.00047 24.3 3.5 28 114-144 55-82 (95)
87 PF09623 Cas_NE0113: CRISPR-as 50.8 33 0.00071 28.2 4.7 42 101-142 97-138 (224)
88 cd01526 RHOD_ThiF Member of th 50.2 24 0.00053 25.4 3.6 28 113-143 70-97 (122)
89 PF10302 DUF2407: DUF2407 ubiq 50.2 8.7 0.00019 27.3 1.1 10 116-125 86-95 (97)
90 PF01807 zf-CHC2: CHC2 zinc fi 49.3 22 0.00047 25.0 3.1 37 119-157 54-90 (97)
91 cd01519 RHOD_HSP67B2 Member of 49.2 28 0.00061 24.0 3.7 28 114-144 65-92 (106)
92 cd01531 Acr2p Eukaryotic arsen 48.0 47 0.001 23.4 4.8 21 114-134 61-81 (113)
93 cd05567 PTS_IIB_mannitol PTS_I 47.5 21 0.00045 24.4 2.7 19 116-135 1-19 (87)
94 cd01530 Cdc25 Cdc25 phosphatas 47.1 25 0.00053 25.6 3.2 26 113-139 66-91 (121)
95 PRK05569 flavodoxin; Provision 46.6 1.1E+02 0.0023 22.5 6.7 91 80-176 48-139 (141)
96 cd01444 GlpE_ST GlpE sulfurtra 46.5 34 0.00074 23.0 3.7 28 113-143 54-81 (96)
97 PRK05728 DNA polymerase III su 46.4 37 0.0008 25.6 4.1 26 100-125 14-39 (142)
98 TIGR02981 phageshock_pspE phag 46.2 55 0.0012 23.0 4.8 27 114-143 57-83 (101)
99 PRK10287 thiosulfate:cyanide s 45.5 39 0.00085 24.0 4.0 27 114-143 59-85 (104)
100 COG2927 HolC DNA polymerase II 45.1 29 0.00062 26.6 3.3 22 103-124 17-38 (144)
101 TIGR00512 salvage_mtnA S-methy 45.1 66 0.0014 28.1 5.9 13 113-125 141-157 (331)
102 TIGR03167 tRNA_sel_U_synt tRNA 43.8 56 0.0012 28.2 5.3 27 115-143 74-100 (311)
103 PF04364 DNA_pol3_chi: DNA pol 43.8 34 0.00073 25.7 3.5 24 101-124 15-38 (137)
104 PRK06036 translation initiatio 43.6 63 0.0014 28.3 5.6 17 113-129 146-162 (339)
105 PF13580 SIS_2: SIS domain; PD 43.5 49 0.0011 24.6 4.4 33 98-133 18-50 (138)
106 COG0279 GmhA Phosphoheptose is 43.5 52 0.0011 25.9 4.5 31 98-131 24-54 (176)
107 TIGR02584 cas_NE0113 CRISPR-as 42.8 58 0.0013 26.5 4.8 43 100-142 102-144 (209)
108 PRK08334 translation initiatio 42.8 57 0.0012 28.8 5.2 12 114-126 160-171 (356)
109 PRK09629 bifunctional thiosulf 42.6 27 0.0006 33.0 3.5 28 113-143 221-248 (610)
110 COG3564 Uncharacterized protei 41.3 42 0.0009 23.9 3.4 26 102-127 11-36 (116)
111 PRK06646 DNA polymerase III su 40.6 50 0.0011 25.5 4.1 27 99-125 13-39 (154)
112 PRK11784 tRNA 2-selenouridine 37.2 83 0.0018 27.6 5.4 20 114-133 87-106 (345)
113 PRK09590 celB cellobiose phosp 36.9 33 0.00071 24.6 2.4 18 116-135 2-19 (104)
114 TIGR01460 HAD-SF-IIA Haloacid 36.7 1.6E+02 0.0034 23.9 6.8 70 101-171 16-98 (236)
115 TIGR01550 DOC_P1 death-on-curi 36.4 82 0.0018 23.1 4.6 53 100-158 50-107 (121)
116 cd01521 RHOD_PspE2 Member of t 36.2 59 0.0013 22.8 3.7 31 113-144 62-92 (110)
117 COG1968 BacA Undecaprenyl pyro 36.2 42 0.0009 28.5 3.2 26 124-151 165-190 (270)
118 PF12554 MOZART1: Mitotic-spin 35.8 1.1E+02 0.0023 18.8 4.4 31 125-156 18-48 (48)
119 PRK05720 mtnA methylthioribose 35.4 1.1E+02 0.0024 26.8 5.9 16 113-128 145-160 (344)
120 KOG0440|consensus 34.5 32 0.0007 28.4 2.2 57 153-209 129-186 (243)
121 COG1054 Predicted sulfurtransf 34.2 57 0.0012 28.1 3.8 48 93-143 148-197 (308)
122 COG0084 TatD Mg-dependent DNas 34.0 60 0.0013 27.2 3.9 55 100-154 110-170 (256)
123 TIGR01245 trpD anthranilate ph 33.4 1.5E+02 0.0032 25.7 6.4 63 113-178 97-167 (330)
124 PF14532 Sigma54_activ_2: Sigm 32.9 97 0.0021 22.7 4.6 33 99-131 5-37 (138)
125 PF02302 PTS_IIB: PTS system, 32.7 30 0.00064 23.3 1.6 13 117-129 1-13 (90)
126 PRK07411 hypothetical protein; 32.7 52 0.0011 29.3 3.5 28 114-144 341-368 (390)
127 PRK15043 transcriptional regul 32.6 95 0.0021 25.9 4.8 61 115-175 162-234 (243)
128 PF13344 Hydrolase_6: Haloacid 32.0 1.2E+02 0.0025 21.3 4.6 55 101-157 16-79 (101)
129 smart00450 RHOD Rhodanese Homo 32.0 80 0.0017 20.7 3.7 29 113-144 54-82 (100)
130 PF00580 UvrD-helicase: UvrD/R 31.0 56 0.0012 27.0 3.3 33 114-146 12-46 (315)
131 cd05006 SIS_GmhA Phosphoheptos 31.0 1.1E+02 0.0024 23.5 4.8 34 97-133 15-48 (177)
132 PRK00162 glpE thiosulfate sulf 30.8 1.2E+02 0.0026 21.0 4.6 29 113-144 56-84 (108)
133 KOG1004|consensus 30.5 1.2E+02 0.0027 24.7 4.9 39 114-154 184-222 (230)
134 COG1513 CynS Cyanate lyase [In 30.4 55 0.0012 24.6 2.7 46 103-148 8-53 (151)
135 PRK11449 putative deoxyribonuc 30.4 1.1E+02 0.0023 25.5 4.8 55 100-154 112-172 (258)
136 smart00488 DEXDc2 DEAD-like he 30.2 1.3E+02 0.0029 25.4 5.5 35 103-137 15-49 (289)
137 smart00489 DEXDc3 DEAD-like he 30.2 1.3E+02 0.0029 25.4 5.5 35 103-137 15-49 (289)
138 cd05565 PTS_IIB_lactose PTS_II 30.1 48 0.001 23.5 2.3 61 117-179 2-71 (99)
139 PHA03338 US22 family homolog; 29.5 51 0.0011 28.3 2.7 42 119-160 160-202 (344)
140 cd01527 RHOD_YgaP Member of th 29.4 91 0.002 21.1 3.7 17 113-130 52-68 (99)
141 TIGR02094 more_P_ylases alpha- 29.3 60 0.0013 30.8 3.4 37 115-154 160-199 (601)
142 KOG1905|consensus 29.3 79 0.0017 27.4 3.8 38 93-130 33-70 (353)
143 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.3 3.6E+02 0.0077 22.6 10.6 94 80-177 160-269 (275)
144 PRK00414 gmhA phosphoheptose i 27.9 1.3E+02 0.0028 23.8 4.7 33 98-133 27-59 (192)
145 TIGR00274 N-acetylmuramic acid 27.3 2E+02 0.0044 24.5 6.0 46 99-147 41-89 (291)
146 cd01720 Sm_D2 The eukaryotic S 27.3 81 0.0018 21.8 3.0 44 105-150 4-47 (87)
147 PRK02947 hypothetical protein; 26.7 1.4E+02 0.003 24.7 4.8 34 97-133 22-55 (246)
148 cd01449 TST_Repeat_2 Thiosulfa 26.1 97 0.0021 21.7 3.4 28 114-144 77-104 (118)
149 PRK13936 phosphoheptose isomer 25.3 2.3E+02 0.0051 22.3 5.8 33 99-134 27-59 (197)
150 PRK09875 putative hydrolase; P 25.2 2.3E+02 0.0051 24.1 6.1 39 98-136 30-69 (292)
151 KOG1530|consensus 24.9 51 0.0011 24.9 1.7 18 115-133 89-106 (136)
152 PRK14041 oxaloacetate decarbox 24.9 5.5E+02 0.012 23.6 10.7 94 80-178 164-274 (467)
153 PRK13352 thiamine biosynthesis 24.9 2.5E+02 0.0054 25.4 6.2 70 103-172 144-248 (431)
154 PF13378 MR_MLE_C: Enolase C-t 24.8 88 0.0019 21.9 3.0 23 101-123 32-54 (111)
155 KOG0235|consensus 24.8 3.6E+02 0.0077 22.0 6.7 47 97-149 134-184 (214)
156 cd07944 DRE_TIM_HOA_like 4-hyd 24.7 4.1E+02 0.0089 22.1 10.6 52 80-133 149-201 (266)
157 PF10727 Rossmann-like: Rossma 24.6 59 0.0013 24.2 2.0 41 83-129 69-110 (127)
158 COG3707 AmiR Response regulato 24.5 82 0.0018 25.3 2.9 22 134-155 151-172 (194)
159 PRK06371 translation initiatio 24.4 99 0.0021 27.0 3.7 17 110-126 132-148 (329)
160 COG0182 Predicted translation 24.3 1E+02 0.0022 26.9 3.7 30 113-142 148-181 (346)
161 PF11848 DUF3368: Domain of un 24.3 1.7E+02 0.0037 17.5 4.2 40 129-170 3-44 (48)
162 KOG1903|consensus 23.9 73 0.0016 25.0 2.4 57 152-208 105-166 (217)
163 PF00931 NB-ARC: NB-ARC domain 23.4 1.2E+02 0.0025 25.0 3.9 37 100-136 4-40 (287)
164 KOG1679|consensus 23.3 2E+02 0.0043 23.9 4.9 76 79-157 37-115 (291)
165 PRK10310 PTS system galactitol 23.2 68 0.0015 22.3 2.0 14 116-129 3-16 (94)
166 PRK14042 pyruvate carboxylase 22.9 6.7E+02 0.014 23.9 11.1 96 80-180 165-277 (596)
167 TIGR00190 thiC thiamine biosyn 22.8 2.9E+02 0.0063 24.9 6.2 70 103-172 141-245 (423)
168 PRK12570 N-acetylmuramic acid- 21.9 1.6E+02 0.0035 25.1 4.5 46 99-144 42-87 (296)
169 CHL00008 petG cytochrome b6/f 21.9 87 0.0019 18.0 1.9 14 129-142 19-32 (37)
170 PRK00665 petG cytochrome b6-f 21.9 87 0.0019 18.0 1.9 14 129-142 19-32 (37)
171 COG4062 MtrB Tetrahydromethano 21.8 1.2E+02 0.0026 21.7 3.0 36 159-194 33-68 (108)
172 cd01294 DHOase Dihydroorotase 21.7 4.7E+02 0.01 22.3 7.4 55 103-157 114-184 (335)
173 cd05007 SIS_Etherase N-acetylm 21.6 1.3E+02 0.0029 25.0 3.8 42 99-143 33-77 (257)
174 PRK11773 uvrD DNA-dependent he 21.5 1.4E+02 0.003 28.8 4.4 42 114-155 21-73 (721)
175 PF01964 ThiC: ThiC family; I 20.9 2.2E+02 0.0048 25.7 5.1 113 60-172 86-244 (420)
176 COG1228 HutI Imidazolonepropio 20.8 3.5E+02 0.0076 24.2 6.5 48 108-155 299-348 (406)
177 PRK12330 oxaloacetate decarbox 20.7 6.9E+02 0.015 23.2 11.0 95 80-177 166-277 (499)
178 PF14555 UBA_4: UBA-like domai 20.7 1.6E+02 0.0034 17.1 3.0 24 130-154 15-38 (43)
179 PRK05600 thiamine biosynthesis 20.6 85 0.0018 27.7 2.6 25 116-143 333-357 (370)
180 KOG1351|consensus 20.6 5E+02 0.011 22.7 7.0 99 93-199 365-463 (489)
181 PRK14040 oxaloacetate decarbox 20.1 7.6E+02 0.016 23.5 11.6 96 80-180 166-278 (593)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.94 E-value=2.2e-26 Score=174.99 Aligned_cols=130 Identities=24% Similarity=0.320 Sum_probs=114.9
Q ss_pred cccccccccccchhhhh---hhcCceEEEEeecccccccccCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeE
Q psy15942 43 ILCMRKAVAFLSPAMTA---AEFNLCIARDILCMRKAEWEGRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVT 118 (211)
Q Consensus 43 il~~~~~ig~~~~~~~~---~~~~i~~i~~~~~~~~~~~~~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~V 118 (211)
|++ ++|+|+.....+. ++.+++.|+++...... ....+++|+++|+.| ...+..+.+..+++||+....+|++|
T Consensus 4 I~~-~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 81 (138)
T smart00195 4 ILP-HLYLGSYSSALNLALLKKLGITHVINVTNEVPN-LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKV 81 (138)
T ss_pred EeC-CeEECChhHcCCHHHHHHcCCCEEEEccCCCCC-CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeE
Confidence 455 7889888777654 45799999887655432 346789999999999 67778889999999999999999999
Q ss_pred EEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy15942 119 YIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYN 174 (211)
Q Consensus 119 lVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~ 174 (211)
+|||.+|+||||+++++|||...||++++|+++++++||.+.|+++|+++|..||+
T Consensus 82 lVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 82 LVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred EEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999986
No 2
>KOG1718|consensus
Probab=99.94 E-value=3.4e-26 Score=175.02 Aligned_cols=144 Identities=19% Similarity=0.134 Sum_probs=124.8
Q ss_pred cccccccccccchhhhh---hhcCceEEEEeecccccccccCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeE
Q psy15942 43 ILCMRKAVAFLSPAMTA---AEFNLCIARDILCMRKAEWEGRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVT 118 (211)
Q Consensus 43 il~~~~~ig~~~~~~~~---~~~~i~~i~~~~~~~~~~~~~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~V 118 (211)
|.. .+|+++=..+.+. ++.++++|++.....++ ..-.+++|..+|+.| +..++.++|+.+.+.|+....+||++
T Consensus 20 It~-sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn-~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~T 97 (198)
T KOG1718|consen 20 ITP-SLFLSNGVAANDKLLLKKRKITCIINATTEVPN-TSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKT 97 (198)
T ss_pred cCc-ceeEeccccccCHHHHHhcCceEEEEcccCCCC-ccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcE
Confidence 555 6677632233332 67899999998877666 344589999999999 89999999999999999999999999
Q ss_pred EEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCC--CCCCC
Q psy15942 119 YIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGSADGST--RAPFR 188 (211)
Q Consensus 119 lVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~~~~--~~~~~ 188 (211)
||||.+|++||+++|.||||+..++++.||+.+++++||.+.||-+||+||..||++|++.+.+. .++..
T Consensus 98 LvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~sV~MV~~p~~ 169 (198)
T KOG1718|consen 98 LVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNASVRMVQTPVG 169 (198)
T ss_pred EEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999988665 34444
No 3
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.94 E-value=3.3e-26 Score=172.76 Aligned_cols=127 Identities=24% Similarity=0.374 Sum_probs=111.3
Q ss_pred cccccchhh--hhhhcCceEEEEeeccccc--ccccCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcC
Q psy15942 49 AVAFLSPAM--TAAEFNLCIARDILCMRKA--EWEGRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCK 123 (211)
Q Consensus 49 ~ig~~~~~~--~~~~~~i~~i~~~~~~~~~--~~~~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~ 123 (211)
|+|+..... ..++.++++|+++...... .....+++|+++|+.| ...+....++.+++||+++..+|++|+|||.
T Consensus 2 ylG~~~~a~~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 81 (133)
T PF00782_consen 2 YLGSYPAASIAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCK 81 (133)
T ss_dssp EEEEHHHHCHHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEeCHHHHhHHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeC
Confidence 555555555 1266789999887765443 2457789999999999 8888889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy15942 124 AGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNI 175 (211)
Q Consensus 124 ~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~ 175 (211)
+|+||||+++++|||...+|++++|++.++++||.+.|++.|+++|..||+.
T Consensus 82 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 82 AGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp SSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999874
No 4
>KOG1717|consensus
Probab=99.93 E-value=7.8e-26 Score=184.30 Aligned_cols=145 Identities=18% Similarity=0.227 Sum_probs=131.1
Q ss_pred hhhhhhhHhhhcccccccccccchhhhh---hhcCceEEEEeecccccccccC-CceEEEEEcCC-CCCCcHHHHHHHHH
Q psy15942 32 AAEFNLCIARDILCMRKAVAFLSPAMTA---AEFNLCIARDILCMRKAEWEGR-GVAHLQLDTIE-FEAPSLYAIEKGLE 106 (211)
Q Consensus 32 ~~~~~~~i~~~il~~~~~ig~~~~~~~~---~~~~i~~i~~~~~~~~~~~~~~-~i~~~~~p~~D-~~~~~~~~l~~~i~ 106 (211)
..++.+. |++ .+|+|+.....+. ++++|.+|+++..+.++.|+.. .+.|..||+.| ........|+++|.
T Consensus 168 ra~FPV~----ilp-~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIs 242 (343)
T KOG1717|consen 168 RASFPVE----ILP-NLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAIS 242 (343)
T ss_pred ccCcchh----hcc-chhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHH
Confidence 3455543 555 7799998888777 7899999999999999988855 49999999999 88888899999999
Q ss_pred HHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCC
Q psy15942 107 FIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGSADG 181 (211)
Q Consensus 107 ~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~~ 181 (211)
||++++.++..|||||-+|++||+|+++||||.+..+++.+|+++|+.++.++.||..|+.||..||+.+..+..
T Consensus 243 fIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s~ 317 (343)
T KOG1717|consen 243 FIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLESR 317 (343)
T ss_pred HHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887653
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.93 E-value=1.2e-24 Score=165.06 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=113.3
Q ss_pred cccccccccccchhhhh---hhcCceEEEEeeccccc-ccccCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCe
Q psy15942 43 ILCMRKAVAFLSPAMTA---AEFNLCIARDILCMRKA-EWEGRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGV 117 (211)
Q Consensus 43 il~~~~~ig~~~~~~~~---~~~~i~~i~~~~~~~~~-~~~~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~ 117 (211)
|.+ ++|+|+.....+. +..+++.+++....... .+...+++|+++|+.| ...+....++.+++||.....++++
T Consensus 5 i~~-~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~ 83 (139)
T cd00127 5 ITP-GLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGK 83 (139)
T ss_pred EcC-CeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 445 7899988887544 55788998888765443 3457899999999999 5466677889999999999999999
Q ss_pred EEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy15942 118 TYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCY 173 (211)
Q Consensus 118 VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~ 173 (211)
|+|||.+|.|||++++++|+|...++++.+|++++|++||.+.+++.|+.||..||
T Consensus 84 vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 84 VLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred EEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999985
No 6
>KOG1716|consensus
Probab=99.92 E-value=1.8e-24 Score=183.52 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=124.8
Q ss_pred cccccccccccchhhhh---hhcCceEEEEeecccccc-cc-cCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCC
Q psy15942 43 ILCMRKAVAFLSPAMTA---AEFNLCIARDILCMRKAE-WE-GRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGG 116 (211)
Q Consensus 43 il~~~~~ig~~~~~~~~---~~~~i~~i~~~~~~~~~~-~~-~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~ 116 (211)
|++ ++|+|+...+.+. +..++++++++....+.. +. ..+++|+++++.| +..++..+++++++||+.++.+|+
T Consensus 78 i~p-~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~ 156 (285)
T KOG1716|consen 78 ILP-NLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGG 156 (285)
T ss_pred ecC-CceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCC
Confidence 555 8899988844444 678999999988776664 23 3489999999999 888999999999999999999999
Q ss_pred eEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q psy15942 117 VTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGSADGST 183 (211)
Q Consensus 117 ~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~~~~ 183 (211)
+|||||.+|++||+++++||||+..+|++++|+++|+.+||.+.||.+|+.||..|++.+.+.....
T Consensus 157 ~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 157 KVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred eEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999876544
No 7
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=3.9e-24 Score=174.26 Aligned_cols=121 Identities=20% Similarity=0.280 Sum_probs=106.2
Q ss_pred hhcCceEEEEeec--ccccccccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHH
Q psy15942 60 AEFNLCIARDILC--MRKAEWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYL 137 (211)
Q Consensus 60 ~~~~i~~i~~~~~--~~~~~~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayL 137 (211)
+.+++..+++... .+...+...||+++++|++|+..|..+.++++++++++.+..|++|+|||.+|+||||+++|+||
T Consensus 113 k~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayL 192 (241)
T PTZ00393 113 KNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVL 192 (241)
T ss_pred HHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 5578888877532 22345678899999999999999999999999999999988999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q psy15942 138 IKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGSADGS 182 (211)
Q Consensus 138 m~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~~~ 182 (211)
|. .|+++++|+++||++||+++ +..|+++|++|+++.++++..
T Consensus 193 I~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~k~~~~ 235 (241)
T PTZ00393 193 IE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKKKKNCL 235 (241)
T ss_pred HH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccccchh
Confidence 98 79999999999999999975 899999999999988776643
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=5.6e-24 Score=166.95 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=104.4
Q ss_pred hhcCceEEEEeecc--cccccccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHc----CCeEEEEcCCCCCchHHHH
Q psy15942 60 AEFNLCIARDILCM--RKAEWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQS----GGVTYIHCKAGRSRSATLT 133 (211)
Q Consensus 60 ~~~~i~~i~~~~~~--~~~~~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~----~~~VlVHC~~G~gRS~t~~ 133 (211)
+..+++++++.... +...+...|++|+++|++|..+|..+.+.++++++++.+.. |++|+|||.+|+||||++|
T Consensus 37 ~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~ 116 (166)
T PTZ00242 37 QRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILV 116 (166)
T ss_pred HhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 56788888876432 22355578999999999998889998899999999988754 8999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy15942 134 ACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGSAD 180 (211)
Q Consensus 134 ~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~ 180 (211)
++|||...++++++|++++|.+||++. +..|+++|+.|++.+++..
T Consensus 117 a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~~~~ 162 (166)
T PTZ00242 117 ALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKKAAG 162 (166)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhccCC
Confidence 999999888999999999999999975 7999999999998877754
No 9
>KOG1720|consensus
Probab=99.89 E-value=1e-22 Score=161.21 Aligned_cols=113 Identities=21% Similarity=0.386 Sum_probs=102.1
Q ss_pred hcCceEEEEee--cccccccccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHH
Q psy15942 61 EFNLCIARDIL--CMRKAEWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLI 138 (211)
Q Consensus 61 ~~~i~~i~~~~--~~~~~~~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm 138 (211)
..+++.+++.- ..+...+.+.||.++++++.|+..|....+.++++.++++.+ ||+|.|||.+|+||||+++|||||
T Consensus 92 ~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lm 170 (225)
T KOG1720|consen 92 NNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLM 170 (225)
T ss_pred hcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHH
Confidence 34555555542 335667889999999999999999999999999999999988 999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy15942 139 KNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYN 174 (211)
Q Consensus 139 ~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~ 174 (211)
+..|+++.||+.++|..||+++++++|...+.+|..
T Consensus 171 y~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 171 YEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999977
No 10
>KOG1719|consensus
Probab=99.87 E-value=5.9e-22 Score=149.79 Aligned_cols=104 Identities=36% Similarity=0.614 Sum_probs=98.5
Q ss_pred ccccCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHh
Q psy15942 77 EWEGRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYK 155 (211)
Q Consensus 77 ~~~~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~ 155 (211)
.|...|++++.+|..| ...|..+.+.++++||++....|+.|+|||.+|.+||+|+++||||...+|++++|++++|++
T Consensus 70 ~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 70 LWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred HHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 5778999999999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCC
Q psy15942 156 RKQIRITKTEKAQIDQCYNIYGSAD 180 (211)
Q Consensus 156 Rp~~~~~~~q~~~L~~~~~~l~~~~ 180 (211)
||.+...+.|++.|.+|....-...
T Consensus 150 Rp~VlL~~~Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 150 RPRVLLRPAQWDVLKEFYKQIVANA 174 (183)
T ss_pred CcceeecHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988766544
No 11
>PRK12361 hypothetical protein; Provisional
Probab=99.87 E-value=1.5e-21 Score=179.14 Aligned_cols=134 Identities=15% Similarity=0.257 Sum_probs=115.1
Q ss_pred cccccccccccchhhhh---hhcCceEEEEeeccccc---ccccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCC
Q psy15942 43 ILCMRKAVAFLSPAMTA---AEFNLCIARDILCMRKA---EWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGG 116 (211)
Q Consensus 43 il~~~~~ig~~~~~~~~---~~~~i~~i~~~~~~~~~---~~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~ 116 (211)
|.+ ++|+|+.....+. ++.++++|+++..+.+. .....+++|+++|+.|...|..+.++++++||++.+++|+
T Consensus 98 I~~-~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~ 176 (547)
T PRK12361 98 IDE-NLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANK 176 (547)
T ss_pred EcC-cEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 555 8899988665554 45889999987654322 2235679999999999777888999999999999999999
Q ss_pred eEEEEcCCCCCchHHHHHHHHHHh-CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q psy15942 117 VTYIHCKAGRSRSATLTACYLIKN-YNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYG 177 (211)
Q Consensus 117 ~VlVHC~~G~gRS~t~~~ayLm~~-~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~ 177 (211)
+|+|||.+|.|||+++++||||.+ .++++++|++.||++||.+.+|+.|+++|+.|++..+
T Consensus 177 ~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~ 238 (547)
T PRK12361 177 SVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGK 238 (547)
T ss_pred eEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999976 4899999999999999999999999999999976644
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.79 E-value=2.2e-18 Score=137.00 Aligned_cols=102 Identities=23% Similarity=0.286 Sum_probs=87.9
Q ss_pred ccccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhC-CCCHHHHHHHHHHh
Q psy15942 77 EWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY-NMNPDDAVKYITYK 155 (211)
Q Consensus 77 ~~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~-~~~~~~A~~~vr~~ 155 (211)
..+..++.+.++|+.|+..|....+.+++++|++...+|++|+|||.+|+|||||++|||||... .+..++++..++.+
T Consensus 67 ~~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~ 146 (180)
T COG2453 67 IEENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRR 146 (180)
T ss_pred eeccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 44577899999999999999999999999999999999999999999999999999999999984 66888888889999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC
Q psy15942 156 RKQIRITKTEKAQIDQCYNIYGS 178 (211)
Q Consensus 156 Rp~~~~~~~q~~~L~~~~~~l~~ 178 (211)
||..+....|..+..+++.....
T Consensus 147 r~~~v~~~~q~~~~~e~~~~~~~ 169 (180)
T COG2453 147 RPGAVVTEIQHLFELEQELFRKK 169 (180)
T ss_pred CCcccccHHHHHHHHHHHHHHhh
Confidence 98767777777666666554443
No 13
>KOG2836|consensus
Probab=99.71 E-value=2.1e-16 Score=117.15 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=100.2
Q ss_pred hhhcCceEEEEee--cccccccccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCchHHHHH
Q psy15942 59 AAEFNLCIARDIL--CMRKAEWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQS--GGVTYIHCKAGRSRSATLTA 134 (211)
Q Consensus 59 ~~~~~i~~i~~~~--~~~~~~~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~--~~~VlVHC~~G~gRS~t~~~ 134 (211)
.++++.+.+++++ ..+....+..||+.+.||++|+.+|..+.+++..+++.....+ |.-|.|||.+|+||++.++|
T Consensus 37 LkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlva 116 (173)
T KOG2836|consen 37 LKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVA 116 (173)
T ss_pred HHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHH
Confidence 3788999999986 4456677899999999999999888888888888887766654 68899999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy15942 135 CYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNI 175 (211)
Q Consensus 135 ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~ 175 (211)
..|+. .|+.+++|++++|.+|.+ ..|..|+.+|++|...
T Consensus 117 lalie-~gmkyedave~ir~krrg-a~n~kql~~lekyrpk 155 (173)
T KOG2836|consen 117 LALIE-AGMKYEDAVEMIRQKRRG-AINSKQLLYLEKYRPK 155 (173)
T ss_pred HHHHH-ccccHHHHHHHHHHHhhc-cccHHHHHHHHHhCcc
Confidence 99887 699999999999999998 7899999999999543
No 14
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.59 E-value=1.9e-14 Score=103.18 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCC-cHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCCchHHHHHHHHHHhC------CCCHHHHHHHHH
Q psy15942 84 AHLQLDTIEFEAP-SLYAIEKGLEFIQKVAQ---SGGVTYIHCKAGRSRSATLTACYLIKNY------NMNPDDAVKYIT 153 (211)
Q Consensus 84 ~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~~---~~~~VlVHC~~G~gRS~t~~~ayLm~~~------~~~~~~A~~~vr 153 (211)
.|+..+|+|...| ....+.++++.+++... .+++|+|||.+|+||||+++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 5677788885545 44677777777777654 2689999999999999999999998764 369999999999
Q ss_pred HhCCCCCCCHHHHHHHHH
Q psy15942 154 YKRKQIRITKTEKAQIDQ 171 (211)
Q Consensus 154 ~~Rp~~~~~~~q~~~L~~ 171 (211)
..||+...+..|+.++..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00404 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999999999999988754
No 15
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.59 E-value=1.9e-14 Score=103.18 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCC-cHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCCchHHHHHHHHHHhC------CCCHHHHHHHHH
Q psy15942 84 AHLQLDTIEFEAP-SLYAIEKGLEFIQKVAQ---SGGVTYIHCKAGRSRSATLTACYLIKNY------NMNPDDAVKYIT 153 (211)
Q Consensus 84 ~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~~---~~~~VlVHC~~G~gRS~t~~~ayLm~~~------~~~~~~A~~~vr 153 (211)
.|+..+|+|...| ....+.++++.+++... .+++|+|||.+|+||||+++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 5677788885545 44677777777777654 2689999999999999999999998764 369999999999
Q ss_pred HhCCCCCCCHHHHHHHHH
Q psy15942 154 YKRKQIRITKTEKAQIDQ 171 (211)
Q Consensus 154 ~~Rp~~~~~~~q~~~L~~ 171 (211)
..||+...+..|+.++..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00012 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999999999999988754
No 16
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.55 E-value=3.1e-14 Score=116.96 Aligned_cols=90 Identities=22% Similarity=0.262 Sum_probs=70.9
Q ss_pred CceEEEEE-cCCCCCC-cHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCCchHHHHHHHHHHhC-----CCCHHHHHHHH
Q psy15942 82 GVAHLQLD-TIEFEAP-SLYAIEKGLEFIQKVAQ--SGGVTYIHCKAGRSRSATLTACYLIKNY-----NMNPDDAVKYI 152 (211)
Q Consensus 82 ~i~~~~~p-~~D~~~~-~~~~l~~~i~~i~~~~~--~~~~VlVHC~~G~gRS~t~~~ayLm~~~-----~~~~~~A~~~v 152 (211)
.+.++++. |+|...| ....+.++++.+++... .++||+|||.+|+||||++||++++... .+++.+++..+
T Consensus 129 ~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~i 208 (231)
T cd00047 129 TVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKEL 208 (231)
T ss_pred EEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34455444 7784444 44667777777766643 3689999999999999999999986543 68999999999
Q ss_pred HHhCCCCCCCHHHHHHHHH
Q psy15942 153 TYKRKQIRITKTEKAQIDQ 171 (211)
Q Consensus 153 r~~Rp~~~~~~~q~~~L~~ 171 (211)
|.+||+++.+..|+.++..
T Consensus 209 R~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 209 RSQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred HhccccccCCHHHHHHHHH
Confidence 9999999999999988864
No 17
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.54 E-value=3e-14 Score=119.08 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCCC-cHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCCchHHHHHHHHHHh-----CCCCHHHHHHHHHHhC
Q psy15942 84 AHLQLDTIEFEAP-SLYAIEKGLEFIQKVAQS-GGVTYIHCKAGRSRSATLTACYLIKN-----YNMNPDDAVKYITYKR 156 (211)
Q Consensus 84 ~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~~~-~~~VlVHC~~G~gRS~t~~~ayLm~~-----~~~~~~~A~~~vr~~R 156 (211)
+|+...|+|.+.| ....+.+++..++..... ++||+|||.+|+||||+|||++++.. ..+++.++++.+|.+|
T Consensus 160 ~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R 239 (258)
T smart00194 160 HYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQR 239 (258)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 3444557785555 556677777777665543 68999999999999999999987743 2689999999999999
Q ss_pred CCCCCCHHHHHHHHH
Q psy15942 157 KQIRITKTEKAQIDQ 171 (211)
Q Consensus 157 p~~~~~~~q~~~L~~ 171 (211)
|+++.+..|+.++..
T Consensus 240 ~~~v~~~~Qy~f~~~ 254 (258)
T smart00194 240 PGMVQTEEQYIFLYR 254 (258)
T ss_pred ccccCCHHHHHHHHH
Confidence 999999999988764
No 18
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.53 E-value=3.1e-14 Score=110.26 Aligned_cols=73 Identities=27% Similarity=0.454 Sum_probs=52.3
Q ss_pred ccccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhC-CCCHHHHH
Q psy15942 77 EWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY-NMNPDDAV 149 (211)
Q Consensus 77 ~~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~-~~~~~~A~ 149 (211)
.+...|+.++++|+.|...|..+.+-++++.+...+++|++|+|||.+|+||||+++|++|+... ++++++|+
T Consensus 95 ~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 95 AAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 34588999999999998788777677788889999999999999999999999999999988755 57999886
No 19
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.48 E-value=2.7e-13 Score=120.73 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=74.8
Q ss_pred eEEEEEcCCCC-CCcHHHHHHHHHHHHHHHHcC---------CeEEEEcCCCCCchHHHHHHHHHHhC-CCCHHHHHHHH
Q psy15942 84 AHLQLDTIEFE-APSLYAIEKGLEFIQKVAQSG---------GVTYIHCKAGRSRSATLTACYLIKNY-NMNPDDAVKYI 152 (211)
Q Consensus 84 ~~~~~p~~D~~-~~~~~~l~~~i~~i~~~~~~~---------~~VlVHC~~G~gRS~t~~~ayLm~~~-~~~~~~A~~~v 152 (211)
+||...|+|++ ++....+..+++.++.....+ +..+|||++|+||||+|||++++... ..++++.+..+
T Consensus 425 QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dl 504 (535)
T PRK15375 425 VLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADF 504 (535)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHH
Confidence 55566689944 455566777777776653221 23479999999999999999998755 46999999999
Q ss_pred HHhCCC-CCCCHHHHHHHHHHHHHhc
Q psy15942 153 TYKRKQ-IRITKTEKAQIDQCYNIYG 177 (211)
Q Consensus 153 r~~Rp~-~~~~~~q~~~L~~~~~~l~ 177 (211)
|..|++ ++++.+|+.+|.+...+|.
T Consensus 505 R~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 505 RNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred HhcCCccccccHHHHHHHHHHHHHHh
Confidence 999999 9999999999999877654
No 20
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.47 E-value=3e-13 Score=115.43 Aligned_cols=89 Identities=12% Similarity=-0.051 Sum_probs=67.5
Q ss_pred ceEEEEEcCCCCCC-cHHHHHHHHHHHHHHH---------HcCCeEEEEcCCCCCchHHHHHHHHHHhC-----CCCHHH
Q psy15942 83 VAHLQLDTIEFEAP-SLYAIEKGLEFIQKVA---------QSGGVTYIHCKAGRSRSATLTACYLIKNY-----NMNPDD 147 (211)
Q Consensus 83 i~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~---------~~~~~VlVHC~~G~gRS~t~~~ayLm~~~-----~~~~~~ 147 (211)
.+|+...|+|++.| ....+.+++..+++.. ...+||+|||++|+||||+|||+..+..+ .+++.+
T Consensus 179 ~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~ 258 (298)
T PHA02740 179 SHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIAN 258 (298)
T ss_pred EEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHH
Confidence 45555678884444 5556666665555432 12479999999999999999998766533 679999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHH
Q psy15942 148 AVKYITYKRKQIRITKTEKAQIDQ 171 (211)
Q Consensus 148 A~~~vr~~Rp~~~~~~~q~~~L~~ 171 (211)
++..+|.+|++++++..|+.++-.
T Consensus 259 ~V~~lR~qR~~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 259 ALKKVRQKKYGCMNCLDDYVFCYH 282 (298)
T ss_pred HHHHHHhhCccccCCHHHHHHHHH
Confidence 999999999999999999887754
No 21
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.43 E-value=6.2e-13 Score=114.28 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCCC-cHHHHHHHHHHHHHHHHc-----------CCeEEEEcCCCCCchHHHHHHHHHHhC-----CCCHH
Q psy15942 84 AHLQLDTIEFEAP-SLYAIEKGLEFIQKVAQS-----------GGVTYIHCKAGRSRSATLTACYLIKNY-----NMNPD 146 (211)
Q Consensus 84 ~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~~~-----------~~~VlVHC~~G~gRS~t~~~ayLm~~~-----~~~~~ 146 (211)
+|+...|+|.+.| ....+.+++..++...+. .+||+|||++|+||||+|||+.++..+ .+++.
T Consensus 186 h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~ 265 (312)
T PHA02747 186 HFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLA 265 (312)
T ss_pred EEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHH
Confidence 4444568885555 455666666666554321 279999999999999999998764433 67999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHH
Q psy15942 147 DAVKYITYKRKQIRITKTEKAQI 169 (211)
Q Consensus 147 ~A~~~vr~~Rp~~~~~~~q~~~L 169 (211)
++++.+|.+|++++++..|+.++
T Consensus 266 ~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 266 KTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred HHHHHHHhccccccCCHHHHHHH
Confidence 99999999999999999999888
No 22
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.42 E-value=8.5e-13 Score=113.00 Aligned_cols=87 Identities=11% Similarity=0.006 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCCC-cHHHHHHHHHHHHHHHH------------cCCeEEEEcCCCCCchHHHHHHHHHHhC-----CCCH
Q psy15942 84 AHLQLDTIEFEAP-SLYAIEKGLEFIQKVAQ------------SGGVTYIHCKAGRSRSATLTACYLIKNY-----NMNP 145 (211)
Q Consensus 84 ~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~~------------~~~~VlVHC~~G~gRS~t~~~ayLm~~~-----~~~~ 145 (211)
+|+...|+|++.| ....+.+++..+.+... ..+||+|||.+|+||||+|||+..+..+ .+++
T Consensus 185 h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v 264 (303)
T PHA02742 185 HFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPL 264 (303)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCH
Confidence 4444568885444 45566666666654321 1379999999999999999998766533 5699
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHH
Q psy15942 146 DDAVKYITYKRKQIRITKTEKAQID 170 (211)
Q Consensus 146 ~~A~~~vr~~Rp~~~~~~~q~~~L~ 170 (211)
.+++..+|.+|++++++..|+.++.
T Consensus 265 ~~~V~~lR~qR~~~Vqt~~QY~F~y 289 (303)
T PHA02742 265 LSIVRDLRKQRHNCLSLPQQYIFCY 289 (303)
T ss_pred HHHHHHHHhhcccccCCHHHHHHHH
Confidence 9999999999999999999987754
No 23
>PHA02738 hypothetical protein; Provisional
Probab=99.42 E-value=1.2e-12 Score=112.76 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCCC-cHHHHHHHHHHHHHHHH--------------cCCeEEEEcCCCCCchHHHHHHHHHHhC-----CC
Q psy15942 84 AHLQLDTIEFEAP-SLYAIEKGLEFIQKVAQ--------------SGGVTYIHCKAGRSRSATLTACYLIKNY-----NM 143 (211)
Q Consensus 84 ~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~~--------------~~~~VlVHC~~G~gRS~t~~~ayLm~~~-----~~ 143 (211)
+|+...|+|.+.| ....+.+++..+.+..+ ..+||+|||.+|+||||+|||...+..+ .+
T Consensus 181 h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~v 260 (320)
T PHA02738 181 HFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATV 260 (320)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCc
Confidence 3444568884444 45566666666654321 1369999999999999999988765433 67
Q ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy15942 144 NPDDAVKYITYKRKQIRITKTEKAQIDQ 171 (211)
Q Consensus 144 ~~~~A~~~vr~~Rp~~~~~~~q~~~L~~ 171 (211)
++.+++..+|.+|++++++..|+.++..
T Consensus 261 dv~~~V~~lR~qR~~~vqt~~QY~F~y~ 288 (320)
T PHA02738 261 SIPSIVSSIRNQRYYSLFIPFQYFFCYR 288 (320)
T ss_pred CHHHHHHHHHhhhhhccCCHHHHHHHHH
Confidence 9999999999999999999999977653
No 24
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.39 E-value=2.1e-12 Score=111.45 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=67.6
Q ss_pred eEEEEEcCCCCCC-cHHHHHHHHHHHHHHHH-------c----CCeEEEEcCCCCCchHHHHHHHHHHhC-----CCCHH
Q psy15942 84 AHLQLDTIEFEAP-SLYAIEKGLEFIQKVAQ-------S----GGVTYIHCKAGRSRSATLTACYLIKNY-----NMNPD 146 (211)
Q Consensus 84 ~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~~-------~----~~~VlVHC~~G~gRS~t~~~ayLm~~~-----~~~~~ 146 (211)
+|+...|+|.+.| ....+.+++..+++... . .+||+|||.+|+||||+|||+..+..+ .+++.
T Consensus 204 h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~ 283 (323)
T PHA02746 204 HFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLG 283 (323)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHH
Confidence 4444567885444 45566666666655432 1 279999999999999999998765432 67999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy15942 147 DAVKYITYKRKQIRITKTEKAQIDQC 172 (211)
Q Consensus 147 ~A~~~vr~~Rp~~~~~~~q~~~L~~~ 172 (211)
+++..+|.+|++++++..|+.++..-
T Consensus 284 ~~V~~lR~qR~~~Vqt~~QY~F~y~~ 309 (323)
T PHA02746 284 EIVLKIRKQRHSSVFLPEQYAFCYKA 309 (323)
T ss_pred HHHHHHHhcccccCCCHHHHHHHHHH
Confidence 99999999999999999999887643
No 25
>KOG0792|consensus
Probab=99.31 E-value=8e-12 Score=118.06 Aligned_cols=123 Identities=17% Similarity=0.173 Sum_probs=89.0
Q ss_pred cccccchhhhhhhcCceEEEEeecccc-cccccCCceEEE-EEcCC-CCCCcHHHHHHHHHHHHHHHHc-CCeEEEEcCC
Q psy15942 49 AVAFLSPAMTAAEFNLCIARDILCMRK-AEWEGRGVAHLQ-LDTIE-FEAPSLYAIEKGLEFIQKVAQS-GGVTYIHCKA 124 (211)
Q Consensus 49 ~ig~~~~~~~~~~~~i~~i~~~~~~~~-~~~~~~~i~~~~-~p~~D-~~~~~~~~l~~~i~~i~~~~~~-~~~VlVHC~~ 124 (211)
-+|.|++.+..++...+++.+.+.... ..-+...+.|+. ..|+| +.+.....|.++++.|..++.. +-||+|||.+
T Consensus 993 ~ygrf~v~~~~~~~t~~y~tr~m~l~~~~t~eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSA 1072 (1144)
T KOG0792|consen 993 EYGRFQVTCVFEQQTTCYVTREMTLKDLQTREERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSA 1072 (1144)
T ss_pred eccceEEEEEEecccccEEEEeEEEeeccCCceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccC
Confidence 456666666666666666666544321 111223344443 56889 5556677888888888888776 6699999999
Q ss_pred CCCchHHHHHH----HHHHhC-CCCHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy15942 125 GRSRSATLTAC----YLIKNY-NMNPDDAVKYITYKRKQIRITKTEKAQIDQ 171 (211)
Q Consensus 125 G~gRS~t~~~a----yLm~~~-~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~ 171 (211)
|+||||+++.+ |++..+ .+++-+.++.+|.+|-.++++..|+.++-+
T Consensus 1073 GiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~~QYkFVye 1124 (1144)
T KOG0792|consen 1073 GIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTLSQYKFVYE 1124 (1144)
T ss_pred CCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccchHHhhHHHH
Confidence 99999999854 455544 679999999999999999999999887653
No 26
>KOG0790|consensus
Probab=99.28 E-value=2.8e-12 Score=111.67 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=69.6
Q ss_pred cccCCceEEEEEcCCCCCCcHH-HHHHHHHHHHHHHH---cCCeEEEEcCCCCCchHHHHHHHHHHh----C----CCCH
Q psy15942 78 WEGRGVAHLQLDTIEFEAPSLY-AIEKGLEFIQKVAQ---SGGVTYIHCKAGRSRSATLTACYLIKN----Y----NMNP 145 (211)
Q Consensus 78 ~~~~~i~~~~~p~~D~~~~~~~-~l~~~i~~i~~~~~---~~~~VlVHC~~G~gRS~t~~~ayLm~~----~----~~~~ 145 (211)
..+.-.+|+.+-|+|++.|... .+..+++-++.... .-|||+|||+||+||||||+++-++.. . .++.
T Consensus 410 ~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi 489 (600)
T KOG0790|consen 410 LEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDI 489 (600)
T ss_pred chhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccH
Confidence 3455678999999996666443 44455554444322 247999999999999999887655432 2 4689
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHH
Q psy15942 146 DDAVKYITYKRKQIRITKTEKAQID 170 (211)
Q Consensus 146 ~~A~~~vr~~Rp~~~~~~~q~~~L~ 170 (211)
...+++||++|.+++++..|++++-
T Consensus 490 ~ktIqmVRsqRSGmVQTEaQYkFiY 514 (600)
T KOG0790|consen 490 QKTIQMVRSQRSGMVQTEAQYKFIY 514 (600)
T ss_pred HHHHHHHHHHhcchhhhHHhHHHHH
Confidence 9999999999999999999987753
No 27
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.26 E-value=2e-11 Score=99.63 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCCC-cHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCCchHHHHHHHHHHhC-----CCCHHHHHHHHHHhC
Q psy15942 84 AHLQLDTIEFEAP-SLYAIEKGLEFIQKVA-QSGGVTYIHCKAGRSRSATLTACYLIKNY-----NMNPDDAVKYITYKR 156 (211)
Q Consensus 84 ~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~-~~~~~VlVHC~~G~gRS~t~~~ayLm~~~-----~~~~~~A~~~vr~~R 156 (211)
.++...|+|...| ....+.++++.+.+.. ...++|+|||.+|.||||+|+++.++..+ .+++.+++..+|.+|
T Consensus 137 ~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R 216 (235)
T PF00102_consen 137 HFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQR 216 (235)
T ss_dssp EEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTS
T ss_pred ceeeeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhC
Confidence 3444467774444 4555656666666555 23589999999999999999999887544 579999999999999
Q ss_pred CCCCCCHHHHHHHHHH
Q psy15942 157 KQIRITKTEKAQIDQC 172 (211)
Q Consensus 157 p~~~~~~~q~~~L~~~ 172 (211)
|+++.+..|+.++...
T Consensus 217 ~~~i~~~~qy~f~~~~ 232 (235)
T PF00102_consen 217 PGAIQSPEQYRFCYMA 232 (235)
T ss_dssp TTSSSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHH
Confidence 9999999999888643
No 28
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.16 E-value=1.5e-10 Score=90.72 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=72.1
Q ss_pred cccccccchhhhh---hhcCceEEEEeeccccc-----ccccCCceEEEEEcCCCCC----CcHHHHHHHHHHHHHHHHc
Q psy15942 47 RKAVAFLSPAMTA---AEFNLCIARDILCMRKA-----EWEGRGVAHLQLDTIEFEA----PSLYAIEKGLEFIQKVAQS 114 (211)
Q Consensus 47 ~~~ig~~~~~~~~---~~~~i~~i~~~~~~~~~-----~~~~~~i~~~~~p~~D~~~----~~~~~l~~~i~~i~~~~~~ 114 (211)
++|=++.....+. +.+++.+|+........ .+...|++++++++..... ...+.+.++++.|.+. .
T Consensus 13 ~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~--~ 90 (164)
T PF03162_consen 13 GVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP--R 90 (164)
T ss_dssp TEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G--G
T ss_pred CccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC--C
Confidence 4444444333332 56888888877654221 2358899999999976332 3445666777766443 3
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy15942 115 GGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGSAD 180 (211)
Q Consensus 115 ~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~ 180 (211)
..||||||..|..|||+++++|- +.+||++..|++..+.--.. ..+..-.++++.|+..+....
T Consensus 91 n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~~~~~~~~ 154 (164)
T PF03162_consen 91 NYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFDVELVVPP 154 (164)
T ss_dssp G-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT---------
T ss_pred CCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcCcceeccc
Confidence 57999999999999999999987 66899999999999875443 556777788888876655433
No 29
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.11 E-value=1.3e-10 Score=95.60 Aligned_cols=92 Identities=21% Similarity=0.284 Sum_probs=65.9
Q ss_pred ceEEEE-EcCCCCCCcHHHHHHHHHHHHHHH---HcCCeEEEEcCCCCCchHHHHHHHHHHhCCC--------------C
Q psy15942 83 VAHLQL-DTIEFEAPSLYAIEKGLEFIQKVA---QSGGVTYIHCKAGRSRSATLTACYLIKNYNM--------------N 144 (211)
Q Consensus 83 i~~~~~-p~~D~~~~~~~~l~~~i~~i~~~~---~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~--------------~ 144 (211)
+++.++ .|.|...| .+.+..++++... -.+++++|||.||+||||||+|...+...-- .
T Consensus 185 Ihhf~y~nW~D~~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~ 261 (302)
T COG5599 185 IHHFQYINWVDFNVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDL 261 (302)
T ss_pred EEEEEecCccccCCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhH
Confidence 344443 37785555 3444444554444 2569999999999999999999877664411 2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q psy15942 145 PDDAVKYITYKRKQIRITKTEKAQIDQCYNIYG 177 (211)
Q Consensus 145 ~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~ 177 (211)
.++.+..+|++|-.+++|..|+.+|..--..+.
T Consensus 262 if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 262 IFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356789999999999999999999986655554
No 30
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=99.09 E-value=1.8e-10 Score=88.83 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=49.0
Q ss_pred cccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHH
Q psy15942 78 WEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIK 139 (211)
Q Consensus 78 ~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~ 139 (211)
....|+.|+++|+.|+..|..+.++++++++... .++..+++||.+|.|||.+++++|.|.
T Consensus 88 ~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 88 VEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999999999999988 678999999999999999999999875
No 31
>KOG0791|consensus
Probab=99.06 E-value=8.8e-10 Score=94.42 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=74.9
Q ss_pred CceEEEEEcCCCCCC-cHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCCchHHHHHHHHHHhC-----CCCHHHHHHHHHH
Q psy15942 82 GVAHLQLDTIEFEAP-SLYAIEKGLEFIQKVAQS-GGVTYIHCKAGRSRSATLTACYLIKNY-----NMNPDDAVKYITY 154 (211)
Q Consensus 82 ~i~~~~~p~~D~~~~-~~~~l~~~i~~i~~~~~~-~~~VlVHC~~G~gRS~t~~~ayLm~~~-----~~~~~~A~~~vr~ 154 (211)
-++++...|+|++.| ....+.+++..+.+.... .++++|||.+|+||||||+|.--+..+ -++...++..+|.
T Consensus 252 ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~ 331 (374)
T KOG0791|consen 252 IRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRS 331 (374)
T ss_pred eEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhh
Confidence 457777888896666 333455555555555443 589999999999999999998765544 4588899999999
Q ss_pred hCCCCCCCHHHHHHHHHHH-HHhcCCC
Q psy15942 155 KRKQIRITKTEKAQIDQCY-NIYGSAD 180 (211)
Q Consensus 155 ~Rp~~~~~~~q~~~L~~~~-~~l~~~~ 180 (211)
.|+.+++|..|+-+|..-- ..|+++.
T Consensus 332 ~R~~mVqte~Qyvfl~~c~~~~l~~~~ 358 (374)
T KOG0791|consen 332 ARMLMVQTEDQYVFLHQCVLESLQGKK 358 (374)
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998653 3455444
No 32
>KOG2283|consensus
Probab=98.99 E-value=2.1e-09 Score=95.64 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=81.9
Q ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCchHHHHHHHHHHhCCC-CHHHHHHHHHHhC---
Q psy15942 83 VAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQS--GGVTYIHCKAGRSRSATLTACYLIKNYNM-NPDDAVKYITYKR--- 156 (211)
Q Consensus 83 i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~--~~~VlVHC~~G~gRS~t~~~ayLm~~~~~-~~~~A~~~vr~~R--- 156 (211)
-+...++|+|+.+|..+.+..+++-++.++.+ ..-|+|||.+|.||||++++|||+...-. ++++|+.++-.+|
T Consensus 73 g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~ 152 (434)
T KOG2283|consen 73 GRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDE 152 (434)
T ss_pred cceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccc
Confidence 35677999999999999999999999999986 36799999999999999999999997655 5999999999999
Q ss_pred C--CCCCCHHHHHHHHHHHHH
Q psy15942 157 K--QIRITKTEKAQIDQCYNI 175 (211)
Q Consensus 157 p--~~~~~~~q~~~L~~~~~~ 175 (211)
. .....+.|.+++..|+..
T Consensus 153 ~~~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 153 GKSKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred cccCCccCchhhHHHHHHHHH
Confidence 4 347788999999999884
No 33
>KOG4228|consensus
Probab=98.97 E-value=5.9e-10 Score=106.37 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=89.1
Q ss_pred cccccchhhhhhhcCceEEEEeeccccccccc--CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHc----CCeEEEEc
Q psy15942 49 AVAFLSPAMTAAEFNLCIARDILCMRKAEWEG--RGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQS----GGVTYIHC 122 (211)
Q Consensus 49 ~ig~~~~~~~~~~~~i~~i~~~~~~~~~~~~~--~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~----~~~VlVHC 122 (211)
-+|.+.+.+...+....++++.++..+..... .--+++...|+|+..|.. --..+.|+++.+.- .||++|||
T Consensus 660 ~yGdi~V~~~~~~~~a~y~iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~--~t~lL~f~rrvk~~~p~~aGPiVVHC 737 (1087)
T KOG4228|consen 660 TYGDIKVTLVQTKPLAEYGIRTFALKKQGENPKREVRQFHFTAWPDHGVPET--PTGLLKFRRRVKTFNPPDAGPIVVHC 737 (1087)
T ss_pred ccccccccceeeeeeccceEEeeeccccCCCCCceeeeeeeccCCCCCCccc--chHHHHHHHHhccCCCcCCCCEEEEC
Confidence 45677777777777778888888776554442 235677778999766643 23345555555442 49999999
Q ss_pred CCCCCchHHHHHHHHHHhC-----CCCHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy15942 123 KAGRSRSATLTACYLIKNY-----NMNPDDAVKYITYKRKQIRITKTEKAQID 170 (211)
Q Consensus 123 ~~G~gRS~t~~~ayLm~~~-----~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~ 170 (211)
.+|+||||++++.-.|..+ .++...-+..+|.+|+.++++..|+-++.
T Consensus 738 SAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~ 790 (1087)
T KOG4228|consen 738 SAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIH 790 (1087)
T ss_pred CCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHH
Confidence 9999999999876555433 67999999999999999999999987765
No 34
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=77.79 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=62.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHH-HHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q psy15942 94 EAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTAC-YLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQI 169 (211)
Q Consensus 94 ~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~a-yLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L 169 (211)
..|...++..+++|++++-+. .+++|||.+|+|||.+.+.. .|.....++-.+..+.+|..+|.+.||+..+.--
T Consensus 73 ~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI~ 148 (172)
T COG5350 73 IAPGEAHVRAIIDFADEWPRF-APLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAIA 148 (172)
T ss_pred cCCCHHHHHHHHHHHhcCccc-cceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHHH
Confidence 667788999999999988665 89999999999999886543 3445568999999999999999999998876543
No 35
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=98.84 E-value=5.1e-08 Score=73.93 Aligned_cols=93 Identities=16% Similarity=0.092 Sum_probs=66.9
Q ss_pred hhcCceEEEEeecccccc-----------cccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCc
Q psy15942 60 AEFNLCIARDILCMRKAE-----------WEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSR 128 (211)
Q Consensus 60 ~~~~i~~i~~~~~~~~~~-----------~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gR 128 (211)
+++++..|++........ ....|++|+++|+.... ...+.+..+.++++ ...+|||+||.+|. |
T Consensus 24 ~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-~~~~~v~~f~~~~~---~~~~pvL~HC~sG~-R 98 (135)
T TIGR01244 24 AQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-ITPDDVETFRAAIG---AAEGPVLAYCRSGT-R 98 (135)
T ss_pred HHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-CCHHHHHHHHHHHH---hCCCCEEEEcCCCh-H
Confidence 456788887766442211 12369999999987643 34445556556554 23589999999999 9
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHhCCC
Q psy15942 129 SATLTACYLIKNYNMNPDDAVKYITYKRKQ 158 (211)
Q Consensus 129 S~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~ 158 (211)
|+++.+.++.. .|++.+++++..+..--.
T Consensus 99 t~~l~al~~~~-~g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 99 SSLLWGFRQAA-EGVPVEEIVRRAQAAGYD 127 (135)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHcCCC
Confidence 99988887766 799999999999876543
No 36
>KOG0793|consensus
Probab=98.77 E-value=1e-08 Score=93.87 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=71.1
Q ss_pred cCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHH-cCCeEEEEcCCCCCchHHHHHHHHHHhC------CCCHHHHHHH
Q psy15942 80 GRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQ-SGGVTYIHCKAGRSRSATLTACYLIKNY------NMNPDDAVKY 151 (211)
Q Consensus 80 ~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~-~~~~VlVHC~~G~gRS~t~~~ayLm~~~------~~~~~~A~~~ 151 (211)
+.--++|.+.|++ +.+.....+.++-+.++++-+ ...+|+|||++|.||||+.|+.-++... .++....++.
T Consensus 890 RTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEH 969 (1004)
T KOG0793|consen 890 RTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEH 969 (1004)
T ss_pred eeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHH
Confidence 4445788888889 555555667777777776643 4689999999999999999887765432 4688889999
Q ss_pred HHHhCCCCCCCHHHHHHHH
Q psy15942 152 ITYKRKQIRITKTEKAQID 170 (211)
Q Consensus 152 vr~~Rp~~~~~~~q~~~L~ 170 (211)
+|.+||+++.+..|.++..
T Consensus 970 lRDQR~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 970 LRDQRPGMVATKDQFEFAL 988 (1004)
T ss_pred HhhcCCcceeehhhhHHHH
Confidence 9999999999999987653
No 37
>KOG0789|consensus
Probab=98.73 E-value=4.6e-08 Score=86.77 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCCCc-HHHHHHHHHH-HHHHHHcCCeEEEEcCCCCCchHHHHHHHHH-Hh--C---CCCHHHHHHHHHH
Q psy15942 83 VAHLQLDTIEFEAPS-LYAIEKGLEF-IQKVAQSGGVTYIHCKAGRSRSATLTACYLI-KN--Y---NMNPDDAVKYITY 154 (211)
Q Consensus 83 i~~~~~p~~D~~~~~-~~~l~~~i~~-i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm-~~--~---~~~~~~A~~~vr~ 154 (211)
.+|++..|+|...|. ...+..++.. ........+|++|||.+|+||||++++...+ .. . ..+..+.+..+|.
T Consensus 265 ~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~ 344 (415)
T KOG0789|consen 265 VHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRY 344 (415)
T ss_pred EEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 456666777854443 3333333332 1222234689999999999999999976532 22 1 2468899999999
Q ss_pred hCCCCCCCHHHHHHHHHH
Q psy15942 155 KRKQIRITKTEKAQIDQC 172 (211)
Q Consensus 155 ~Rp~~~~~~~q~~~L~~~ 172 (211)
+|++++++..|+.++..-
T Consensus 345 qR~~~vqt~~Qy~f~~~~ 362 (415)
T KOG0789|consen 345 QRPGAVQSPLQYLFIYAA 362 (415)
T ss_pred HhhhcccchhHHHHHHHH
Confidence 999999999998766644
No 38
>KOG4228|consensus
Probab=98.65 E-value=2.1e-08 Score=95.95 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCchHHHHHHHHHHhC-----CCCHHHHHHHHHH
Q psy15942 82 GVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQS--GGVTYIHCKAGRSRSATLTACYLIKNY-----NMNPDDAVKYITY 154 (211)
Q Consensus 82 ~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~--~~~VlVHC~~G~gRS~t~~~ayLm~~~-----~~~~~~A~~~vr~ 154 (211)
.++|..||..+..+.....+..+....+...+. .+|+.|||.+|.||||+|||+-++..+ -+|..++++.+|.
T Consensus 983 qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~ 1062 (1087)
T KOG4228|consen 983 QFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRF 1062 (1087)
T ss_pred EEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhh
Confidence 345555555442222222333333333333332 589999999999999999988765533 4699999999999
Q ss_pred hCCCCCCCHHHHHHHHH
Q psy15942 155 KRKQIRITKTEKAQIDQ 171 (211)
Q Consensus 155 ~Rp~~~~~~~q~~~L~~ 171 (211)
.||+++.+.+|++++.+
T Consensus 1063 ~rp~mv~t~~QY~fcYd 1079 (1087)
T KOG4228|consen 1063 QRPGMVDTSDQYQFCYD 1079 (1087)
T ss_pred cCccccCcHHHHHHHHH
Confidence 99999999999988764
No 39
>KOG2386|consensus
Probab=98.55 E-value=1.8e-07 Score=81.83 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=84.3
Q ss_pred cccccccCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHH----cCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHH
Q psy15942 74 RKAEWEGRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQ----SGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDA 148 (211)
Q Consensus 74 ~~~~~~~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~----~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A 148 (211)
+.......|+.|+.+...- ...|.......++..+++... .++-|+|||.+|.+|+|-++++|||...+|+..+|
T Consensus 78 ~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~a 157 (393)
T KOG2386|consen 78 DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEA 157 (393)
T ss_pred ccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHH
Confidence 4566678899999998877 546666666666655555544 47889999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q psy15942 149 VKYITYKRKQIRITKTEKAQIDQCYNIYG 177 (211)
Q Consensus 149 ~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~ 177 (211)
++.+...||...-.+..+..|...+....
T Consensus 158 ik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 158 IKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred HHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 99999999988888888888877655444
No 40
>PLN02727 NAD kinase
Probab=98.54 E-value=4.8e-07 Score=86.08 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=65.7
Q ss_pred hhcCceEEEEeeccccc--c--------cccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCch
Q psy15942 60 AEFNLCIARDILCMRKA--E--------WEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRS 129 (211)
Q Consensus 60 ~~~~i~~i~~~~~~~~~--~--------~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS 129 (211)
.+.++..|++....... . .+..|++|+++|+.+...+..+.++++.+++++ ...+|||+||..|..|+
T Consensus 278 A~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~--slpkPVLvHCKSGarRA 355 (986)
T PLN02727 278 LEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSD--SSKKPIYLHSKEGVWRT 355 (986)
T ss_pred HHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHh--hcCCCEEEECCCCCchH
Confidence 44688888876554331 1 125799999999988888888999998888854 33689999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q psy15942 130 ATLTACYLIKNYNMN 144 (211)
Q Consensus 130 ~t~~~ayLm~~~~~~ 144 (211)
|+++|+|+.+..+..
T Consensus 356 GamvA~yl~~~~~~~ 370 (986)
T PLN02727 356 SAMVSRWKQYMTRSA 370 (986)
T ss_pred HHHHHHHHHHHcccc
Confidence 999999999876643
No 41
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.31 E-value=3.1e-06 Score=66.07 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=44.7
Q ss_pred hhcCceEEEEeeccccc----ccccCCceEEEEEcCCCCCCcHHH--------------H------------HHHHHHHH
Q psy15942 60 AEFNLCIARDILCMRKA----EWEGRGVAHLQLDTIEFEAPSLYA--------------I------------EKGLEFIQ 109 (211)
Q Consensus 60 ~~~~i~~i~~~~~~~~~----~~~~~~i~~~~~p~~D~~~~~~~~--------------l------------~~~i~~i~ 109 (211)
.++++..|++.-...+. .....+++++++|+.+........ + ..+-+++.
T Consensus 39 ~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~ 118 (164)
T PF13350_consen 39 RELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFE 118 (164)
T ss_dssp HHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred HhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 46888888887544321 123458999999997732221100 0 01111122
Q ss_pred HHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHH
Q psy15942 110 KVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKY 151 (211)
Q Consensus 110 ~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~ 151 (211)
......+++++||.+|..|||.++|..|.. .|++.++.++.
T Consensus 119 ~l~~~~~p~l~HC~aGKDRTG~~~alll~~-lGV~~~~I~~D 159 (164)
T PF13350_consen 119 LLADAPGPVLFHCTAGKDRTGVVAALLLSL-LGVPDEDIIAD 159 (164)
T ss_dssp HHH-TT--EEEE-SSSSSHHHHHHHHHHHH-TT--HHHHHHH
T ss_pred HhccCCCcEEEECCCCCccHHHHHHHHHHH-cCCCHHHHHHH
Confidence 222345799999999999999999886655 69998887653
No 42
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.14 E-value=1.1e-05 Score=67.43 Aligned_cols=61 Identities=25% Similarity=0.350 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcC-CeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCH
Q psy15942 103 KGLEFIQKVAQSG-GVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITK 163 (211)
Q Consensus 103 ~~i~~i~~~~~~~-~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~ 163 (211)
.+.+++.-.+..+ +|||+||.+|..|||.++|+|+....++....+-+++...++......
T Consensus 123 ~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 123 RLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 3344444444444 999999999999999999999999877777788888888888755554
No 43
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.98 E-value=2.2e-05 Score=57.50 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=40.0
Q ss_pred hhcCceEEEEeeccccc-----------ccccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCc
Q psy15942 60 AEFNLCIARDILCMRKA-----------EWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSR 128 (211)
Q Consensus 60 ~~~~i~~i~~~~~~~~~-----------~~~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gR 128 (211)
.+.+...|++...+... ..+..|+.|+++|+.-. ....+.+..+.+.+++ ..+|||+||..|. |
T Consensus 24 a~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~---~~~Pvl~hC~sG~-R 98 (110)
T PF04273_consen 24 AAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG-AITEEDVEAFADALES---LPKPVLAHCRSGT-R 98 (110)
T ss_dssp HHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT-T--HHHHHHHHHHHHT---TTTSEEEE-SCSH-H
T ss_pred HHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC-CCCHHHHHHHHHHHHh---CCCCEEEECCCCh-h
Confidence 44677777766544221 23378999999999753 3555666666665554 3689999999996 8
Q ss_pred hHHHHHHH
Q psy15942 129 SATLTACY 136 (211)
Q Consensus 129 S~t~~~ay 136 (211)
++++.+..
T Consensus 99 a~~l~~l~ 106 (110)
T PF04273_consen 99 ASALWALA 106 (110)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776653
No 44
>KOG1572|consensus
Probab=97.79 E-value=0.00028 Score=57.74 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=73.9
Q ss_pred hcCceEEEEeeccc-c----cccccCCceEEEEEcCCCC----CC----cHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q psy15942 61 EFNLCIARDILCMR-K----AEWEGRGVAHLQLDTIEFE----AP----SLYAIEKGLEFIQKVAQSGGVTYIHCKAGRS 127 (211)
Q Consensus 61 ~~~i~~i~~~~~~~-~----~~~~~~~i~~~~~p~~D~~----~~----~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~g 127 (211)
.++...|+.+.... + ..++.++|++.++.+.-.. .| ..+.+..+++++-. ..+.|+||||..|..
T Consensus 83 ~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld--~~N~P~Lihc~rGkh 160 (249)
T KOG1572|consen 83 TLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLD--KRNYPILIHCKRGKH 160 (249)
T ss_pred HhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHhc--ccCCceEEecCCCCc
Confidence 35555555544331 1 1355889999999995521 22 23345555555322 346899999999999
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy15942 128 RSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGSAD 180 (211)
Q Consensus 128 RS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~ 180 (211)
|+|+++.+.- +.++|++.-.++..+..-... -...-+++++.|+.......
T Consensus 161 Rtg~lVgclR-klq~W~lssil~Ey~~fa~sk-~r~~d~~Fie~fd~~~~~~~ 211 (249)
T KOG1572|consen 161 RTGCLVGCLR-KLQNWSLSSILDEYLRFAGSK-GRRVDLRFIEMFDTNPKKNV 211 (249)
T ss_pred chhhhHHHHH-HHhccchhHHHHHHHHhccch-hHHHHHHHHHHhcccccccc
Confidence 9999999954 667999998888777665543 22333445666655544443
No 45
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.76 E-value=0.00022 Score=64.26 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=75.5
Q ss_pred cCCceEEEEEcCC---CCCCcHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCchHHHHHHHHHHhCCC-----------
Q psy15942 80 GRGVAHLQLDTIE---FEAPSLYAIEKGLEFIQKVAQS--GGVTYIHCKAGRSRSATLTACYLIKNYNM----------- 143 (211)
Q Consensus 80 ~~~i~~~~~p~~D---~~~~~~~~l~~~i~~i~~~~~~--~~~VlVHC~~G~gRS~t~~~ayLm~~~~~----------- 143 (211)
.....++++++.. +...+...+++++.|+.....+ +.+|+|+|..|...|..++.|.|.....-
T Consensus 336 ~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~ 415 (451)
T PF04179_consen 336 PKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERP 415 (451)
T ss_pred CCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccC
Confidence 5567899999977 4445667889999999998887 89999999999999999999888776521
Q ss_pred -----CHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy15942 144 -----NPDDAVKYITYKRKQIRITKTEKAQIDQC 172 (211)
Q Consensus 144 -----~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~ 172 (211)
...+-+.+|...+|.+.|+..-++++..|
T Consensus 416 ~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 416 SITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 23456788888899999999988888776
No 46
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.0026 Score=46.81 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=45.4
Q ss_pred ccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHH
Q psy15942 79 EGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYIT 153 (211)
Q Consensus 79 ~~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr 153 (211)
+..|+.|.++|+.-.+ .....++.+.+.+.+ .++|||.||+.| .||.++=..-. ...|++.+++..+=+
T Consensus 55 ~~aGl~y~~iPV~~~~-iT~~dV~~f~~Al~e---aegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~ 123 (130)
T COG3453 55 EAAGLTYTHIPVTGGG-ITEADVEAFQRALDE---AEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQ 123 (130)
T ss_pred HhcCCceEEeecCCCC-CCHHHHHHHHHHHHH---hCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHH
Confidence 3779999999996532 233445555555554 379999999999 47654433322 345898888766543
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.66 E-value=0.0061 Score=46.47 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=44.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHc---CCeEEEEcCCCCCc----hHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q psy15942 91 IEFEAPSLYAIEKGLEFIQKVAQS---GGVTYIHCKAGRSR----SATLTACYLIKNYNMNPDDAVKYITYKRK 157 (211)
Q Consensus 91 ~D~~~~~~~~l~~~i~~i~~~~~~---~~~VlVHC~~G~gR----S~t~~~ayLm~~~~~~~~~A~~~vr~~Rp 157 (211)
.|.++-....+-+++..+++.+++ .++.+|||.+.-.+ ++.++++|+|..+||++++|++.+...-|
T Consensus 39 ~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 567777777888888888888765 58888998876544 56688999999999999999999987754
No 48
>KOG4471|consensus
Probab=95.97 E-value=0.014 Score=53.55 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHH
Q psy15942 102 EKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYL 137 (211)
Q Consensus 102 ~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayL 137 (211)
..++..+++....+.+|+|||+.|..||+-+++..+
T Consensus 361 aga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~ 396 (717)
T KOG4471|consen 361 AGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAM 396 (717)
T ss_pred HHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHH
Confidence 345555666666789999999999999999886543
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=92.57 E-value=0.31 Score=42.79 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=18.7
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHH
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACY 136 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ay 136 (211)
.+|..|+|||..|..||+.+++..
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ 252 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLA 252 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHH
Confidence 468899999999999998877654
No 50
>KOG1089|consensus
Probab=90.77 E-value=0.58 Score=43.35 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=22.2
Q ss_pred HHHHHH-cCCeEEEEcCCCCCchHHHHHHH
Q psy15942 108 IQKVAQ-SGGVTYIHCKAGRSRSATLTACY 136 (211)
Q Consensus 108 i~~~~~-~~~~VlVHC~~G~gRS~t~~~ay 136 (211)
|.+++. +|-.|+|||..|..||..++...
T Consensus 336 ia~~l~~~~~sVlvhcsdGwDrT~qV~SLa 365 (573)
T KOG1089|consen 336 IAKCLSSEGASVLVHCSDGWDRTCQVSSLA 365 (573)
T ss_pred HHHHHHhCCCeEEEEccCCcchhHHHHHHH
Confidence 333344 56899999999999998887644
No 51
>PLN02160 thiosulfate sulfurtransferase
Probab=80.52 E-value=2.4 Score=31.83 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=19.4
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
..+.+|+|||..| .||...+.. +...|+.
T Consensus 79 ~~~~~IivyC~sG-~RS~~Aa~~--L~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKATTE--LVAAGYK 107 (136)
T ss_pred CCCCcEEEECCCc-HHHHHHHHH--HHHcCCC
Confidence 4578999999998 677654332 3445653
No 52
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=79.87 E-value=5.8 Score=30.70 Aligned_cols=28 Identities=18% Similarity=0.014 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
++.+|+|.|..|..||.. +++++...|.
T Consensus 115 ~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 568999999998777765 4444555565
No 53
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=79.77 E-value=4.9 Score=28.43 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
.+.+|+|+|..|. ||.. ++. .+...|+
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~-~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQ-SLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHH-HHHHCCC
Confidence 3579999999985 7733 333 3445676
No 54
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=79.69 E-value=2.6 Score=29.38 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=19.4
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
.++.+|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4568999999988 688644 3344 445653
No 55
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=76.54 E-value=1.7 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.1
Q ss_pred CCCCCCCccccccccccccccc
Q psy15942 1 MSNYANNSKATEIMLGSQKNNA 22 (211)
Q Consensus 1 ~~~~~~~s~~~~~~~~s~~~~~ 22 (211)
|+.|++.|.+|..+..+.|++.
T Consensus 1 masstpaspapsdils~~pqs~ 22 (29)
T PF05570_consen 1 MASSTPASPAPSDILSSKPQSK 22 (29)
T ss_pred CCcCCCCCCCcHHHHhcCcccc
Confidence 8889999999999988888764
No 56
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=73.75 E-value=15 Score=25.36 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=32.1
Q ss_pred EEEEcCC----CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHH---HHHHhCCCC
Q psy15942 86 LQLDTIE----FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTAC---YLIKNYNMN 144 (211)
Q Consensus 86 ~~~p~~D----~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~a---yLm~~~~~~ 144 (211)
.++|+.. ........+.............+..|+|+|..|. |+...+++ +.+...|++
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 6666632 3344445555554444444456788999996664 55555444 334444553
No 57
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=71.69 E-value=11 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=20.6
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
.++.+|+|.|..|-.||...+ +++...|.+
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~~ 113 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLA--WLLESLGID 113 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHH--HHHHHcCCc
Confidence 456899999986556776444 666666763
No 58
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=71.68 E-value=5 Score=27.82 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
..+.+|+|+|..| +||.. ++..| ...|++
T Consensus 59 ~~~~~ivv~C~~G-~rs~~-aa~~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKE-GSSQF-VAELL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCC-CcHHH-HHHHH-HHcCce
Confidence 3568999999998 47744 33333 445664
No 59
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=70.74 E-value=5.3 Score=27.85 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=20.4
Q ss_pred HHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 112 AQSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 112 ~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
..++++++|+|..| .|| ..++.+|.. .|++
T Consensus 58 ~~~~~~ivv~C~~G-~rS-~~aa~~L~~-~G~~ 87 (110)
T COG0607 58 LPDDDPIVVYCASG-VRS-AAAAAALKL-AGFT 87 (110)
T ss_pred cCCCCeEEEEeCCC-CCh-HHHHHHHHH-cCCc
Confidence 45679999999999 467 445554554 4543
No 60
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=69.24 E-value=10 Score=27.21 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
.+.+|+|+|..| |+.+..++..| ...|++
T Consensus 78 ~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 78 NDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 468999999998 55556555444 445654
No 61
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=68.84 E-value=14 Score=27.44 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=32.8
Q ss_pred CceEEEEEcCC-CCCCcHH-HHHHHHHHHHHHHHcCCe-EEEEcCCCCCchHHHHHHHHHHhCC
Q psy15942 82 GVAHLQLDTIE-FEAPSLY-AIEKGLEFIQKVAQSGGV-TYIHCKAGRSRSATLTACYLIKNYN 142 (211)
Q Consensus 82 ~i~~~~~p~~D-~~~~~~~-~l~~~i~~i~~~~~~~~~-VlVHC~~G~gRS~t~~~ayLm~~~~ 142 (211)
.++-..++++| .++.... .++.+.+.|.+...+++. .+--|-+|--++.++.++|.+...|
T Consensus 53 ~i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 53 EVHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 34445556677 3333222 233444445555555442 2333456656677788888887666
No 62
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=67.62 E-value=12 Score=31.85 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=15.6
Q ss_pred eEEEEcCCCCCchHHHH
Q psy15942 117 VTYIHCKAGRSRSATLT 133 (211)
Q Consensus 117 ~VlVHC~~G~gRS~t~~ 133 (211)
.|.|-|++|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 58999999999998887
No 63
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=67.53 E-value=11 Score=27.27 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
..+.+|+|+|..| .||...+ .+| ...|.
T Consensus 62 ~~~~~ivv~C~~G-~rs~~aa-~~L-~~~G~ 89 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAAA-EAA-AQAGF 89 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHHH-HHH-HHCCC
Confidence 4568999999988 5776543 323 44554
No 64
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=67.09 E-value=14 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
++.+|+|.|..| .||... +.+|.. .|++
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 468999999988 576443 444443 5654
No 65
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=66.05 E-value=12 Score=31.63 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.4
Q ss_pred eEEEEcCCCCCchHHHH
Q psy15942 117 VTYIHCKAGRSRSATLT 133 (211)
Q Consensus 117 ~VlVHC~~G~gRS~t~~ 133 (211)
.|.|-|.+|..||.+++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 48899999999999887
No 66
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=64.86 E-value=13 Score=31.63 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHH----HcCC---eEEEEcCCCCCchHHHH
Q psy15942 101 IEKGLEFIQKVA----QSGG---VTYIHCKAGRSRSATLT 133 (211)
Q Consensus 101 l~~~i~~i~~~~----~~~~---~VlVHC~~G~gRS~t~~ 133 (211)
++.+.++++.++ ++|+ .|-|-|.+|..||.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 224 LDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 344444544443 3343 48899999999998887
No 67
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=62.98 E-value=15 Score=25.08 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 115 GGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 115 ~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
..+|+|.|..|...+...++.. +...|.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~-L~~~G~ 77 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARR-LSELGY 77 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHH-HHHcCc
Confidence 6799999998854334444443 344554
No 68
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=59.69 E-value=12 Score=23.41 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q psy15942 132 LTACYLIKNYNMNPDDAVKYITYK 155 (211)
Q Consensus 132 ~~~ayLm~~~~~~~~~A~~~vr~~ 155 (211)
-+...||...|++..+|++.++..
T Consensus 17 ~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 17 QAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHH
Confidence 456778998999999999999875
No 69
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=59.16 E-value=31 Score=27.66 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHH
Q psy15942 99 YAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYL 137 (211)
Q Consensus 99 ~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayL 137 (211)
+.+.++++.+.+++.++++|++. |.|+|+..+..+.
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a 60 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFA 60 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHH
Confidence 56888888888888899999987 8888887665443
No 70
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=58.65 E-value=11 Score=31.78 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=21.9
Q ss_pred CCCCCchHHHHHHHHHHhCCCCHHHHHHH
Q psy15942 123 KAGRSRSATLTACYLIKNYNMNPDDAVKY 151 (211)
Q Consensus 123 ~~G~gRS~t~~~ayLm~~~~~~~~~A~~~ 151 (211)
--|+||||+.+++-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 3699999999888666 49999988654
No 71
>PRK05320 rhodanese superfamily protein; Provisional
Probab=58.19 E-value=27 Score=29.28 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
++++|+++|..| .|| ..++.+|.. .|++
T Consensus 174 kdk~IvvyC~~G-~Rs-~~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGG-IRC-EKAAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCC-HHH-HHHHHHHHH-cCCc
Confidence 468999999999 466 445555544 5653
No 72
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=57.71 E-value=22 Score=30.71 Aligned_cols=28 Identities=11% Similarity=0.286 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
++++|+|+|.+| .||. .++++|.. .|++
T Consensus 170 kdk~IvvyC~~G-~Rs~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGG-IRCE-KASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCC-cHHH-HHHHHHHH-cCCC
Confidence 468999999988 5774 45555554 5653
No 73
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=56.87 E-value=28 Score=28.20 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=19.7
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNY 141 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~ 141 (211)
...|+|+|- |+||||.++-+..|...
T Consensus 37 ~~~gkv~V~---G~GkSG~Igkk~Aa~L~ 62 (202)
T COG0794 37 ECKGKVFVT---GVGKSGLIGKKFAARLA 62 (202)
T ss_pred hcCCcEEEE---cCChhHHHHHHHHHHHH
Confidence 446899986 99999999866655533
No 74
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=56.68 E-value=28 Score=30.77 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=10.8
Q ss_pred cCCeEEEEcCCCC
Q psy15942 114 SGGVTYIHCKAGR 126 (211)
Q Consensus 114 ~~~~VlVHC~~G~ 126 (211)
+|..||.||.+|.
T Consensus 166 dg~~ILThcnsg~ 178 (363)
T PRK05772 166 DGDTVLTQCNAGG 178 (363)
T ss_pred CCCEEEEecCCcc
Confidence 5778999999873
No 75
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=56.29 E-value=12 Score=31.77 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHH
Q psy15942 124 AGRSRSATLTACYLIKNYNMNPDDAVKY 151 (211)
Q Consensus 124 ~G~gRS~t~~~ayLm~~~~~~~~~A~~~ 151 (211)
-|+||||+-+++-++ .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999998888666 49999988654
No 76
>smart00400 ZnF_CHCC zinc finger.
Probab=55.15 E-value=17 Score=22.58 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=22.8
Q ss_pred EEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHH
Q psy15942 119 YIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYI 152 (211)
Q Consensus 119 lVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~v 152 (211)
..||.+ -|+.|-++-. +|...|+++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~i~f-v~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNVISF-LMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCHHHH-HHHHHCcCHHHHHHHh
Confidence 478874 4566665444 5666799999999876
No 77
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=55.07 E-value=13 Score=31.15 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=21.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHH
Q psy15942 124 AGRSRSATLTACYLIKNYNMNPDDAVKY 151 (211)
Q Consensus 124 ~G~gRS~t~~~ayLm~~~~~~~~~A~~~ 151 (211)
-|+||||+-+++-+. .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999998888666 49999988654
No 78
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=53.95 E-value=22 Score=24.61 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 115 GGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 115 ~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
+.+|+|+|..|. ||..++. .+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~--~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA--FLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH--HHHHcCC
Confidence 579999999885 6654433 3444565
No 79
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=53.90 E-value=12 Score=26.25 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCCchHHHHHHHH---HHhCCCCHH--H-HHHHHHHhC--CC-CCCCHHHHHHHHHHHHHhcC
Q psy15942 115 GGVTYIHCKAGRSRSATLTACYL---IKNYNMNPD--D-AVKYITYKR--KQ-IRITKTEKAQIDQCYNIYGS 178 (211)
Q Consensus 115 ~~~VlVHC~~G~gRS~t~~~ayL---m~~~~~~~~--~-A~~~vr~~R--p~-~~~~~~q~~~L~~~~~~l~~ 178 (211)
..+|++-|.+|++ |..++ --+ ..++|++.+ . .+..+...- .. +...+.....+.++++.+..
T Consensus 3 ~~~ILl~C~~G~s-SS~l~-~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLV-NKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred ccEEEEECCCchh-HHHHH-HHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhh
Confidence 3689999999998 55444 222 233355331 0 122222222 22 45556666666677666544
No 80
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=53.46 E-value=14 Score=31.15 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=21.1
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHH
Q psy15942 124 AGRSRSATLTACYLIKNYNMNPDDAVKY 151 (211)
Q Consensus 124 ~G~gRS~t~~~ayLm~~~~~~~~~A~~~ 151 (211)
-|+||||+-+.+-+. .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999998888665 49999988654
No 81
>PRK01415 hypothetical protein; Validated
Probab=53.40 E-value=35 Score=28.52 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=19.8
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
.++++|+++|.+| .|| ..++++|.. +|..
T Consensus 169 ~k~k~Iv~yCtgG-iRs-~kAa~~L~~-~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGG-IRC-EKSTSLLKS-IGYD 197 (247)
T ss_pred cCCCeEEEECCCC-hHH-HHHHHHHHH-cCCC
Confidence 4568999999888 476 455555544 5653
No 82
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=53.26 E-value=42 Score=23.76 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=14.6
Q ss_pred CCeEEEEcCCCCCchHHHH
Q psy15942 115 GGVTYIHCKAGRSRSATLT 133 (211)
Q Consensus 115 ~~~VlVHC~~G~gRS~t~~ 133 (211)
..+|+|||..|-.||...+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4789999998767876544
No 83
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=53.12 E-value=18 Score=24.70 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=18.3
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
..+.+|+|+|..| +||.. ++.+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4568999999876 57744 34444 44565
No 84
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=53.05 E-value=19 Score=24.71 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
..+.+|+|+|..| .||. .+ +..+...|+
T Consensus 59 ~~~~~ivv~c~~g-~~s~-~~-~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSA-LA-GKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHH-HH-HHHHHHcCh
Confidence 4568999999887 5664 33 344455564
No 85
>PRK13938 phosphoheptose isomerase; Provisional
Probab=52.63 E-value=42 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHH
Q psy15942 96 PSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIK 139 (211)
Q Consensus 96 ~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~ 139 (211)
...+.+.++.+.+.+++.+|++|+|- |.|+|+.++......
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 34566778888888888999999987 788887777554443
No 86
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=52.32 E-value=22 Score=24.29 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
.+.+|+++|..|. ||.. ++.+| ...|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCCE
Confidence 3579999999884 6643 34444 555653
No 87
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=50.76 E-value=33 Score=28.23 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCC
Q psy15942 101 IEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYN 142 (211)
Q Consensus 101 l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~ 142 (211)
.+.+.+.|.+..++.+..+.-|-+|--++..+.++|.+.-.|
T Consensus 97 ~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~g 138 (224)
T PF09623_consen 97 ADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFG 138 (224)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcC
Confidence 345556666666664555555667766788888888777665
No 88
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=50.23 E-value=24 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
..+++|+|+|..|. ||...+ . .+...|+
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~-~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-R-KLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-H-HHHHcCC
Confidence 34689999999984 775333 3 3444566
No 89
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=50.16 E-value=8.7 Score=27.29 Aligned_cols=10 Identities=50% Similarity=1.032 Sum_probs=8.7
Q ss_pred CeEEEEcCCC
Q psy15942 116 GVTYIHCKAG 125 (211)
Q Consensus 116 ~~VlVHC~~G 125 (211)
.++||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5899999876
No 90
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=49.29 E-value=22 Score=25.02 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=24.4
Q ss_pred EEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q psy15942 119 YIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRK 157 (211)
Q Consensus 119 lVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp 157 (211)
..||.+ -|..|-++.. +|...++++.+|++++...-.
T Consensus 54 ~~~Cf~-Cg~~Gd~i~~-v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFG-CGKGGDVIDF-VMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETT-T--EE-HHHH-HHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECC-CCCCCcHHhH-HHHHhCCCHHHHHHHHHHHhC
Confidence 689984 6777766544 577789999999999987543
No 91
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=49.16 E-value=28 Score=24.03 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
++.+|+|+|..|. ||.. + ++++...|.+
T Consensus 65 ~~~~ivv~c~~g~-~s~~-~-~~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA-A-AELARSLGYE 92 (106)
T ss_pred CCCeEEEECCCcH-HHHH-H-HHHHHHcCCc
Confidence 4679999999885 6533 3 3445556653
No 92
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=47.99 E-value=47 Score=23.44 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=14.6
Q ss_pred cCCeEEEEcCCCCCchHHHHH
Q psy15942 114 SGGVTYIHCKAGRSRSATLTA 134 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ 134 (211)
...+|+|||..+-.|+...+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCCeEEEEeecCCcchHHHHH
Confidence 347999999855567765543
No 93
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=47.53 E-value=21 Score=24.37 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=13.8
Q ss_pred CeEEEEcCCCCCchHHHHHH
Q psy15942 116 GVTYIHCKAGRSRSATLTAC 135 (211)
Q Consensus 116 ~~VlVHC~~G~gRS~t~~~a 135 (211)
++|++.|.+|.|=| ++++.
T Consensus 1 ~kilvvCg~G~gtS-~ml~~ 19 (87)
T cd05567 1 KKIVFACDAGMGSS-AMGAS 19 (87)
T ss_pred CEEEEECCCCccHH-HHHHH
Confidence 47999999999854 44443
No 94
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=47.06 E-value=25 Score=25.60 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=16.5
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHH
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIK 139 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~ 139 (211)
.+..+|+|||..+-.||+. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCccccHHH-HHHHHHH
Confidence 3568999999733367655 4444543
No 95
>PRK05569 flavodoxin; Provisional
Probab=46.58 E-value=1.1e+02 Score=22.48 Aligned_cols=91 Identities=8% Similarity=-0.038 Sum_probs=49.8
Q ss_pred cCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC-chHHHHHHHHHHhCCCCHHHHHHHHHHhCCC
Q psy15942 80 GRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRS-RSATLTACYLIKNYNMNPDDAVKYITYKRKQ 158 (211)
Q Consensus 80 ~~~i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~g-RS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~ 158 (211)
+...-.+-.|+..........+..+++.+.....+|+++.+-+..|.+ ..+.-.....+...|+.....+.. .
T Consensus 48 ~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~------~ 121 (141)
T PRK05569 48 EADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAV------N 121 (141)
T ss_pred hCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEE------c
Confidence 334455555655433222234555555554433467899999998865 222222333345456654332111 2
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy15942 159 IRITKTEKAQIDQCYNIY 176 (211)
Q Consensus 159 ~~~~~~q~~~L~~~~~~l 176 (211)
-.|+..-++.+++|-+.+
T Consensus 122 ~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 122 ESPNKEELNSAKELGKKL 139 (141)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 357888888888886655
No 96
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=46.53 E-value=34 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=17.1
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
..+.+|+|+|..| .||. .++. .+...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~-~a~~-~l~~~G~ 81 (96)
T cd01444 54 DRDRPVVVYCYHG-NSSA-QLAQ-ALREAGF 81 (96)
T ss_pred CCCCCEEEEeCCC-ChHH-HHHH-HHHHcCC
Confidence 4578999999966 3443 3333 3444554
No 97
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=46.37 E-value=37 Score=25.63 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy15942 100 AIEKGLEFIQKVAQSGGVTYIHCKAG 125 (211)
Q Consensus 100 ~l~~~i~~i~~~~~~~~~VlVHC~~G 125 (211)
...-+++++.++.++|.+|+|+|..-
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 55668889999999999999999654
No 98
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=46.23 E-value=55 Score=23.04 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=17.1
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
.+.+|+|+|..|. ||... +..| ...|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~~L-~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KDIL-LDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HHHH-HHcCC
Confidence 4578999999984 66544 3333 34555
No 99
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=45.55 E-value=39 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=16.7
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
.+.+|+|+|..| .||...+ ..|. ..|+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa-~~L~-~~G~ 85 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK-EILS-EMGY 85 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH-HHHH-HcCC
Confidence 357899999987 5655443 3333 3454
No 100
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=45.05 E-value=29 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCeEEEEcCC
Q psy15942 103 KGLEFIQKVAQSGGVTYIHCKA 124 (211)
Q Consensus 103 ~~i~~i~~~~~~~~~VlVHC~~ 124 (211)
.++.++.++...|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7888999999999999999954
No 101
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=45.05 E-value=66 Score=28.11 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=10.7
Q ss_pred HcCC----eEEEEcCCC
Q psy15942 113 QSGG----VTYIHCKAG 125 (211)
Q Consensus 113 ~~~~----~VlVHC~~G 125 (211)
.+|. .||.||.+|
T Consensus 141 ~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 141 KKGVAAPLRVLTHCNTG 157 (331)
T ss_pred cCCCCCCceEEeecCCc
Confidence 3567 899999988
No 102
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=43.84 E-value=56 Score=28.21 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 115 GGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 115 ~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
+..|+|+|..|-.||..++. ++...|+
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~--~L~~~G~ 100 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAW--LLAQIGF 100 (311)
T ss_pred CCcEEEEECCCChHHHHHHH--HHHHcCC
Confidence 34599999765578866543 3344454
No 103
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=43.80 E-value=34 Score=25.66 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCC
Q psy15942 101 IEKGLEFIQKVAQSGGVTYIHCKA 124 (211)
Q Consensus 101 l~~~i~~i~~~~~~~~~VlVHC~~ 124 (211)
..-++++++++.++|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 466788999999999999999965
No 104
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=43.61 E-value=63 Score=28.31 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=13.6
Q ss_pred HcCCeEEEEcCCCCCch
Q psy15942 113 QSGGVTYIHCKAGRSRS 129 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS 129 (211)
..|..||.||.+|..+|
T Consensus 146 ~~g~~ILThc~sg~lat 162 (339)
T PRK06036 146 EDGDTVLTHCNAGRLAC 162 (339)
T ss_pred cCCCEEEEecCCccccc
Confidence 35788999999997665
No 105
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=43.50 E-value=49 Score=24.55 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH
Q psy15942 98 LYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLT 133 (211)
Q Consensus 98 ~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~ 133 (211)
.+.+.++.+.+.+.+.+|++|++. |.|-|+.++
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a 50 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIA 50 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHH
Confidence 456788888899999998888887 555565554
No 106
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=43.46 E-value=52 Score=25.94 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHH
Q psy15942 98 LYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSAT 131 (211)
Q Consensus 98 ~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t 131 (211)
.+.+.++.+.|-++...|++|+++ |.|+|..
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 345667777777888888999886 5555644
No 107
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=42.84 E-value=58 Score=26.49 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCC
Q psy15942 100 AIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYN 142 (211)
Q Consensus 100 ~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~ 142 (211)
..+.+.+.|.+...+.+..+.-|-+|--++..+.+.|.+..+|
T Consensus 102 aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~g 144 (209)
T TIGR02584 102 AANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFG 144 (209)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhC
Confidence 3445556666665445555555667766677788887776554
No 108
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=42.75 E-value=57 Score=28.82 Aligned_cols=12 Identities=42% Similarity=0.936 Sum_probs=9.4
Q ss_pred cCCeEEEEcCCCC
Q psy15942 114 SGGVTYIHCKAGR 126 (211)
Q Consensus 114 ~~~~VlVHC~~G~ 126 (211)
+|. ||-||.+|.
T Consensus 160 dg~-ILTHcnaG~ 171 (356)
T PRK08334 160 EGN-VLTHCNAGS 171 (356)
T ss_pred CCC-EEEecCcch
Confidence 344 999999875
No 109
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=42.61 E-value=27 Score=33.04 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=17.7
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
..+.+|+|+|..|. ||+.. ++++...|+
T Consensus 221 ~~~~~VVvYC~sG~-rAa~~--~~~L~~lG~ 248 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGFT--YLVAKALGY 248 (610)
T ss_pred CCCCCEEEECCCCh-HHHHH--HHHHHHcCC
Confidence 34689999999985 55543 233444554
No 110
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.31 E-value=42 Score=23.88 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Q psy15942 102 EKGLEFIQKVAQSGGVTYIHCKAGRS 127 (211)
Q Consensus 102 ~~~i~~i~~~~~~~~~VlVHC~~G~g 127 (211)
++++++|.+...+.++|+.|=++|..
T Consensus 11 ~aAl~Li~~l~~~hgpvmFHQSGGCC 36 (116)
T COG3564 11 PAALDLIAELQAEHGPVMFHQSGGCC 36 (116)
T ss_pred HHHHHHHHHHHHhcCCEEEeccCCcc
Confidence 56788888888889999999766653
No 111
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=40.61 E-value=50 Score=25.47 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy15942 99 YAIEKGLEFIQKVAQSGGVTYIHCKAG 125 (211)
Q Consensus 99 ~~l~~~i~~i~~~~~~~~~VlVHC~~G 125 (211)
..+.-+++++.++..+|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 356678899999999999999999654
No 112
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=37.16 E-value=83 Score=27.60 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.9
Q ss_pred cCCeEEEEcCCCCCchHHHH
Q psy15942 114 SGGVTYIHCKAGRSRSATLT 133 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~ 133 (211)
.+.+|+|+|..|-.||..++
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa 106 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ 106 (345)
T ss_pred CCCeEEEEECCCChHHHHHH
Confidence 56899999986667887764
No 113
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=36.89 E-value=33 Score=24.61 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=12.8
Q ss_pred CeEEEEcCCCCCchHHHHHH
Q psy15942 116 GVTYIHCKAGRSRSATLTAC 135 (211)
Q Consensus 116 ~~VlVHC~~G~gRS~t~~~a 135 (211)
++|++-|.+|++ .++++-
T Consensus 2 kkILlvCg~G~S--TSlla~ 19 (104)
T PRK09590 2 KKALIICAAGMS--SSMMAK 19 (104)
T ss_pred cEEEEECCCchH--HHHHHH
Confidence 479999999994 344443
No 114
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=36.71 E-value=1.6e+02 Score=23.92 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCC--CH-------HHHHHHHHHhCCC----CCCCHHHHH
Q psy15942 101 IEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNM--NP-------DDAVKYITYKRKQ----IRITKTEKA 167 (211)
Q Consensus 101 l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~--~~-------~~A~~~vr~~Rp~----~~~~~~q~~ 167 (211)
+..+.++|....++|.++.+..+.+ +|+..-++..|....|+ +. .-+..++++..|. +.-+.+..+
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~~ 94 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELRE 94 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 5567788888888888888887654 78888888888775553 33 3356777765543 233455565
Q ss_pred HHHH
Q psy15942 168 QIDQ 171 (211)
Q Consensus 168 ~L~~ 171 (211)
.|+.
T Consensus 95 ~l~~ 98 (236)
T TIGR01460 95 SLEG 98 (236)
T ss_pred HHHH
Confidence 6654
No 115
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=36.41 E-value=82 Score=23.06 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEc-CCCCCchHHHHHHHHHHhCCC----CHHHHHHHHHHhCCC
Q psy15942 100 AIEKGLEFIQKVAQSGGVTYIHC-KAGRSRSATLTACYLIKNYNM----NPDDAVKYITYKRKQ 158 (211)
Q Consensus 100 ~l~~~i~~i~~~~~~~~~VlVHC-~~G~gRS~t~~~ayLm~~~~~----~~~~A~~~vr~~Rp~ 158 (211)
.++.+..++....+. |+ ..|--||+.+++..++..+|+ +.+++.+++...--+
T Consensus 50 i~~kAa~l~~~l~~~------HpF~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA~~ 107 (121)
T TIGR01550 50 IFEVSAVLLYALIRS------HPFNNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVATG 107 (121)
T ss_pred HHHHHHHHHHHHHHh------CCCccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHHCC
Confidence 344444444444443 33 378899999999988888875 566777777766544
No 116
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=36.20 E-value=59 Score=22.82 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=18.8
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
..+.+|+|.|..|.+..+..++. .+...|.+
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~-~l~~~G~~ 92 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAAL-KLAELGFP 92 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHH-HHHHcCCe
Confidence 45789999999886433333333 33445653
No 117
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=36.17 E-value=42 Score=28.46 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHH
Q psy15942 124 AGRSRSATLTACYLIKNYNMNPDDAVKY 151 (211)
Q Consensus 124 ~G~gRS~t~~~ayLm~~~~~~~~~A~~~ 151 (211)
-|.||||+-+.+-+. .|++-++|.++
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999998777655 38888877543
No 118
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=35.83 E-value=1.1e+02 Score=18.85 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q psy15942 125 GRSRSATLTACYLIKNYNMNPDDAVKYITYKR 156 (211)
Q Consensus 125 G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~R 156 (211)
|+.|...-++.-|+ ..|++++.-...|+..|
T Consensus 18 gLd~etL~ici~L~-e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 18 GLDRETLSICIELC-ENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHHHhC
Confidence 89998555544444 47999997666666554
No 119
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=35.44 E-value=1.1e+02 Score=26.81 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=12.5
Q ss_pred HcCCeEEEEcCCCCCc
Q psy15942 113 QSGGVTYIHCKAGRSR 128 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gR 128 (211)
..|..||.||.+|.-.
T Consensus 145 ~~g~~ILThc~sg~la 160 (344)
T PRK05720 145 RKGQGILTHCNAGWLA 160 (344)
T ss_pred cCCCEEEEecCCCcce
Confidence 3577899999998644
No 120
>KOG0440|consensus
Probab=34.49 E-value=32 Score=28.37 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=42.9
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCC-CCCChhhhhhccCCcCccccc
Q psy15942 153 TYKRKQIRITKTEKAQIDQCYNIYGSADGSTRAPFR-SFPLSKWQLERTPLVHFFKVM 209 (211)
Q Consensus 153 r~~Rp~~~~~~~q~~~L~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~ 209 (211)
...+|...+-+.+++.|..|=+...........-++ +.|.......++=|+++|+|+
T Consensus 129 ~~~kp~~~sApqYId~lmtw~q~~~dde~iFPtK~g~~FP~nF~~~vk~Ilr~lFrvy 186 (243)
T KOG0440|consen 129 EKGKPVRVSAPQYIDYLMTWCQNQLDDENIFPTKYGNPFPGNFESVVKKILRRLFRVY 186 (243)
T ss_pred ccCCccccCchHHHHHHHHHHHHhccccccCccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 344677889999999999994443333445555554 889888999999999999986
No 121
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=34.18 E-value=57 Score=28.08 Aligned_cols=48 Identities=8% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 93 FEAPSLYAIEKGLEFIQKVAQ--SGGVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 93 ~~~~~~~~l~~~i~~i~~~~~--~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
-..|....|.++-.++.+... ++++|+.-|++|+ |. =-+.+||.. .|+
T Consensus 148 Av~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~~-~GF 197 (308)
T COG1054 148 AVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMKE-NGF 197 (308)
T ss_pred ccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHHH-hcc
Confidence 445666777777777776654 4789999999998 55 444555443 454
No 122
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=33.97 E-value=60 Score=27.24 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhC------CCCHHHHHHHHHH
Q psy15942 100 AIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY------NMNPDDAVKYITY 154 (211)
Q Consensus 100 ~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~------~~~~~~A~~~vr~ 154 (211)
...-+..+|+-+.+.+.||.|||+.....+-.++--+..... .=+.++|-+.+..
T Consensus 110 Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~ 170 (256)
T COG0084 110 QEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDL 170 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHc
Confidence 445566777777788899999998865555444433321011 2377777777754
No 123
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=33.39 E-value=1.5e+02 Score=25.73 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=42.4
Q ss_pred HcCCeEEEEcCCCCC-chHHHHHHHHHHhCCC----CHHHHHHHHHHhCCCCCCCHHHHHHHH---HHHHHhcC
Q psy15942 113 QSGGVTYIHCKAGRS-RSATLTACYLIKNYNM----NPDDAVKYITYKRKQIRITKTEKAQID---QCYNIYGS 178 (211)
Q Consensus 113 ~~~~~VlVHC~~G~g-RS~t~~~ayLm~~~~~----~~~~A~~~vr~~Rp~~~~~~~q~~~L~---~~~~~l~~ 178 (211)
..|-+|+.|+..|++ ++|+ +-++...|+ +++++.+.+.+......+-+.+-..++ ...+.+.-
T Consensus 97 ~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~ 167 (330)
T TIGR01245 97 AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHVAPVRRELGV 167 (330)
T ss_pred hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHHHHHHHHhCC
Confidence 468999999998887 7775 345665664 778899999887776555555544443 33444443
No 124
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=32.93 E-value=97 Score=22.68 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHH
Q psy15942 99 YAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSAT 131 (211)
Q Consensus 99 ~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t 131 (211)
..+.++.+.+.++...+.+|+|....|.|++-.
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 356677777888888889999999999999853
No 125
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=32.70 E-value=30 Score=23.34 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.0
Q ss_pred eEEEEcCCCCCch
Q psy15942 117 VTYIHCKAGRSRS 129 (211)
Q Consensus 117 ~VlVHC~~G~gRS 129 (211)
+|++-|.+|+|=|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 6899999999844
No 126
>PRK07411 hypothetical protein; Validated
Probab=32.70 E-value=52 Score=29.26 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
++.+|+|+|..|. ||.. ++.. +...|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~-L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGI-LKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHH-HHHcCCC
Confidence 4689999999885 7744 4443 4456764
No 127
>PRK15043 transcriptional regulator MirA; Provisional
Probab=32.57 E-value=95 Score=25.89 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCC------------CCCCHHHHHHHHHHHHH
Q psy15942 115 GGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQ------------IRITKTEKAQIDQCYNI 175 (211)
Q Consensus 115 ~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~------------~~~~~~q~~~L~~~~~~ 175 (211)
|+++++-|..|-.++...+.|++....|+..+=--.-+..-||. ..+++.|.++|..|...
T Consensus 162 ~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~~v~vl~~~~~~~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~~~ 234 (243)
T PRK15043 162 GKDALVVGWNIHDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQ 234 (243)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHhcCCceEEEeCCcccccChhhcCCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 66799999999999999999988888876443222223333443 45678999999999654
No 128
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=32.03 E-value=1.2e+02 Score=21.28 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHH---------HHHHHHHhCC
Q psy15942 101 IEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDD---------AVKYITYKRK 157 (211)
Q Consensus 101 l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~---------A~~~vr~~Rp 157 (211)
++.+.++|+..++.|.++++.-+. -+||..-.+..| ...|++..+ +..+++...+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNn-s~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNN-SSRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES--SSS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCC-CCCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 566778888888888888887655 467867666666 556765432 5666666443
No 129
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=31.95 E-value=80 Score=20.71 Aligned_cols=29 Identities=21% Similarity=0.539 Sum_probs=17.0
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
..+.+|+|+|..| .|+ ..+++.+...|..
T Consensus 54 ~~~~~iv~~c~~g-~~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSG-NRS--AKAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCC-cHH--HHHHHHHHHcCCC
Confidence 3468999999655 455 2333344445553
No 130
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=31.03 E-value=56 Score=27.02 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=25.0
Q ss_pred cCCeEEEEcCCCCCchHHHH--HHHHHHhCCCCHH
Q psy15942 114 SGGVTYIHCKAGRSRSATLT--ACYLIKNYNMNPD 146 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~--~ayLm~~~~~~~~ 146 (211)
..++++|-..+|-|-|.+++ ++||+...+++++
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~ 46 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPE 46 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGG
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChH
Confidence 46999999999999999887 4778876655544
No 131
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=31.01 E-value=1.1e+02 Score=23.46 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH
Q psy15942 97 SLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLT 133 (211)
Q Consensus 97 ~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~ 133 (211)
..+.+.++++.+.+++.++++|++. |.|.|..++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3467888899998888888888877 666665554
No 132
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=30.77 E-value=1.2e+02 Score=21.01 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
..+.+++|+|..|. ||. .++. .+...|++
T Consensus 56 ~~~~~ivv~c~~g~-~s~-~a~~-~L~~~G~~ 84 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQ-GAAQ-YLLQQGFD 84 (108)
T ss_pred CCCCCEEEEeCCCC-CHH-HHHH-HHHHCCch
Confidence 45689999999885 553 3333 34445653
No 133
>KOG1004|consensus
Probab=30.54 E-value=1.2e+02 Score=24.75 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=30.2
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITY 154 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~ 154 (211)
-+|+|+|||.. .+....++-+||....++-++++..++.
T Consensus 184 lNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 184 LNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred cCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 37999999976 3566777888888889988887755554
No 134
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=30.38 E-value=55 Score=24.64 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHH
Q psy15942 103 KGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDA 148 (211)
Q Consensus 103 ~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A 148 (211)
++.+.+-...++.|-.+---..|.||+.++|++.+......+.++|
T Consensus 8 ~l~~~ll~~Kk~kgLsfaDl~~~lG~~ev~vaa~~ygqa~~~~~ea 53 (151)
T COG1513 8 DLADALLLAKKKKGLSFADLADGLGLAEVFVAAALYGQAALPADEA 53 (151)
T ss_pred HHHHHHHHHHHhcCCcHHHHHhhcCccHHHHHHHHHhhccCCHHHH
Confidence 3333444444444444445568999999999997766555555543
No 135
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=30.37 E-value=1.1e+02 Score=25.53 Aligned_cols=55 Identities=7% Similarity=-0.008 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHH------HhCCCCHHHHHHHHHH
Q psy15942 100 AIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLI------KNYNMNPDDAVKYITY 154 (211)
Q Consensus 100 ~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm------~~~~~~~~~A~~~vr~ 154 (211)
...-+..+++-+.+.+.||.|||....+..--++-.+-. .-..=+.++|-++++.
T Consensus 112 Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 112 QQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 344455566666677899999998755443333332210 0012377788777774
No 136
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=30.20 E-value=1.3e+02 Score=25.40 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHH
Q psy15942 103 KGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYL 137 (211)
Q Consensus 103 ~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayL 137 (211)
++.+.|.+...+|+.+++.--.|.|.|.++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 34455566667789999999999999977665544
No 137
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=30.20 E-value=1.3e+02 Score=25.40 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHH
Q psy15942 103 KGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYL 137 (211)
Q Consensus 103 ~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayL 137 (211)
++.+.|.+...+|+.+++.--.|.|.|.++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 34455566667789999999999999977665544
No 138
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.07 E-value=48 Score=23.53 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=32.2
Q ss_pred eEEEEcCCCCCchHHHHHHHHH---HhCCCCHH---HHHHHHHHhCC--C-CCCCHHHHHHHHHHHHHhcCC
Q psy15942 117 VTYIHCKAGRSRSATLTACYLI---KNYNMNPD---DAVKYITYKRK--Q-IRITKTEKAQIDQCYNIYGSA 179 (211)
Q Consensus 117 ~VlVHC~~G~gRS~t~~~ayLm---~~~~~~~~---~A~~~vr~~Rp--~-~~~~~~q~~~L~~~~~~l~~~ 179 (211)
+|++-|.+| -|.++++--+- ...|++.+ -.+..+...-. . +...|.....+.++.+.+...
T Consensus 2 ~Ill~C~~G--aSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCC--CCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhc
Confidence 589999776 66777765432 33355331 01222222221 2 455566666666776666554
No 139
>PHA03338 US22 family homolog; Provisional
Probab=29.54 E-value=51 Score=28.26 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=32.0
Q ss_pred EEEcCCCCCchHHHHH-HHHHHhCCCCHHHHHHHHHHhCCCCC
Q psy15942 119 YIHCKAGRSRSATLTA-CYLIKNYNMNPDDAVKYITYKRKQIR 160 (211)
Q Consensus 119 lVHC~~G~gRS~t~~~-ayLm~~~~~~~~~A~~~vr~~Rp~~~ 160 (211)
-+||.+|++=||.+.- .|++..++.+++....+|...+.+..
T Consensus 160 pihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe~~ 202 (344)
T PHA03338 160 PIHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGESV 202 (344)
T ss_pred EeccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCcee
Confidence 4699999999987664 55666778888888888887776643
No 140
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=29.44 E-value=91 Score=21.14 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=12.8
Q ss_pred HcCCeEEEEcCCCCCchH
Q psy15942 113 QSGGVTYIHCKAGRSRSA 130 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS~ 130 (211)
..+.+|+|+|..|. ||.
T Consensus 52 ~~~~~iv~~c~~g~-~s~ 68 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQ 68 (99)
T ss_pred CCCCcEEEEeCCCc-hHH
Confidence 45689999999884 444
No 141
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=29.33 E-value=60 Score=30.76 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHH---hCCCCHHHHHHHHHH
Q psy15942 115 GGVTYIHCKAGRSRSATLTACYLIK---NYNMNPDDAVKYITY 154 (211)
Q Consensus 115 ~~~VlVHC~~G~gRS~t~~~ayLm~---~~~~~~~~A~~~vr~ 154 (211)
-.+.+|||+.|. ++++.++||+ ..+++.++|++.++.
T Consensus 160 ~~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 160 IDPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CCceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 378999999997 5788888754 357888888876554
No 142
>KOG1905|consensus
Probab=29.30 E-value=79 Score=27.37 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchH
Q psy15942 93 FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSA 130 (211)
Q Consensus 93 ~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~ 130 (211)
...+..+.+..-++.+.+++++++.++||=.||++-++
T Consensus 33 e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa 70 (353)
T KOG1905|consen 33 EEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAA 70 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCcccccc
Confidence 44455677888888888888999999999999998553
No 143
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.27 E-value=3.6e+02 Score=22.58 Aligned_cols=94 Identities=7% Similarity=0.015 Sum_probs=51.5
Q ss_pred cCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhC---------------CC
Q psy15942 80 GRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY---------------NM 143 (211)
Q Consensus 80 ~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~---------------~~ 143 (211)
+.|... +.+.| .+.-.+..+.+.+..+.+... .++-+||+.-.|-+.+-+.+.+..-- +.
T Consensus 160 ~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~ 235 (275)
T cd07937 160 DMGADS--ICIKDMAGLLTPYAAYELVKALKKEVG--LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQP 235 (275)
T ss_pred HcCCCE--EEEcCCCCCCCHHHHHHHHHHHHHhCC--CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCCh
Confidence 445444 44557 555556677777777765543 78999998766655554433322100 34
Q ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q psy15942 144 NPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYG 177 (211)
Q Consensus 144 ~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~ 177 (211)
+.++.+..++..--....+...+..+.++-..++
T Consensus 236 ~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~ 269 (275)
T cd07937 236 STESMVAALRGTGRDTGLDLEKLEEISEYFEEVR 269 (275)
T ss_pred hHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence 6667677776552222344455555555444333
No 144
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=27.92 E-value=1.3e+02 Score=23.82 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH
Q psy15942 98 LYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLT 133 (211)
Q Consensus 98 ~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~ 133 (211)
.+.+.++++.|.+++.+|++|++- |.|.|+.++
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 367899999999999999999886 666676644
No 145
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=27.30 E-value=2e+02 Score=24.49 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH---HHHHHHhCCCCHHH
Q psy15942 99 YAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLT---ACYLIKNYNMNPDD 147 (211)
Q Consensus 99 ~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~---~ayLm~~~~~~~~~ 147 (211)
+.+.++++.+.+.+.+||+|++- |.|=||.++ +.-+....|++...
T Consensus 41 ~~I~~av~~~~~~l~~gGrl~~~---G~G~Sg~l~~~DA~e~~~t~g~~~~~ 89 (291)
T TIGR00274 41 PDIAAAVEQIVQAFQQGGRLIYI---GAGTSGRLGVLDASECPPTFGVSPEL 89 (291)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEE---CCcHHHHHHHHHHHHhhhhcCCCHHH
Confidence 34666677777777788888776 555566553 33344445655443
No 146
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=27.29 E-value=81 Score=21.83 Aligned_cols=44 Identities=14% Similarity=0.315 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHH
Q psy15942 105 LEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVK 150 (211)
Q Consensus 105 i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~ 150 (211)
++++..+...+++|+|+++.|..=.|++.+.- ...++-+.+|.+
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L~~fD--~hmNlvL~d~~E 47 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRVKAFD--RHCNMVLENVKE 47 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEEEEec--CccEEEEcceEE
Confidence 35667777778999999999977666654432 112455555543
No 147
>PRK02947 hypothetical protein; Provisional
Probab=26.70 E-value=1.4e+02 Score=24.66 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH
Q psy15942 97 SLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLT 133 (211)
Q Consensus 97 ~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~ 133 (211)
..+.++++++.+.+.+.++++|+|. |.|.|+.++
T Consensus 22 ~~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA 55 (246)
T PRK02947 22 QAEAIEKAADLIADSIRNGGLIYVF---GTGHSHILA 55 (246)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHH
Confidence 3467888899998888888999987 666665554
No 148
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=26.11 E-value=97 Score=21.71 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 114 SGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
.+.+|+|+|..|. ||..+ ++.+...|.+
T Consensus 77 ~~~~iv~yc~~g~-~s~~~--~~~l~~~G~~ 104 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL--LLALELLGYK 104 (118)
T ss_pred CCCCEEEECCcHH-HHHHH--HHHHHHcCCC
Confidence 4689999999874 55443 3444555653
No 149
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.28 E-value=2.3e+02 Score=22.35 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHH
Q psy15942 99 YAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTA 134 (211)
Q Consensus 99 ~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ 134 (211)
+.+.++++.+.+++.++++|++- |.|.|+.++.
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~ 59 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQ 59 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHH
Confidence 45667777788888888999887 7777766553
No 150
>PRK09875 putative hydrolase; Provisional
Probab=25.17 E-value=2.3e+02 Score=24.14 Aligned_cols=39 Identities=13% Similarity=-0.034 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcC-CCCCchHHHHHHH
Q psy15942 98 LYAIEKGLEFIQKVAQSGGVTYIHCK-AGRSRSATLTACY 136 (211)
Q Consensus 98 ~~~l~~~i~~i~~~~~~~~~VlVHC~-~G~gRS~t~~~ay 136 (211)
.+.++.+++-+.+.++.|+..+|-|+ .|+||-+.+....
T Consensus 30 l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~i 69 (292)
T PRK09875 30 LDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDV 69 (292)
T ss_pred cccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHH
Confidence 34567777777777788999999986 8999999887763
No 151
>KOG1530|consensus
Probab=24.93 E-value=51 Score=24.87 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=13.5
Q ss_pred CCeEEEEcCCCCCchHHHH
Q psy15942 115 GGVTYIHCKAGRSRSATLT 133 (211)
Q Consensus 115 ~~~VlVHC~~G~gRS~t~~ 133 (211)
...|+|+|..|. ||....
T Consensus 89 d~eiIf~C~SG~-Rs~~A~ 106 (136)
T KOG1530|consen 89 DKEIIFGCASGV-RSLKAT 106 (136)
T ss_pred CCcEEEEeccCc-chhHHH
Confidence 358999999994 775533
No 152
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=24.87 E-value=5.5e+02 Score=23.60 Aligned_cols=94 Identities=6% Similarity=-0.037 Sum_probs=52.2
Q ss_pred cCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhC----------------C
Q psy15942 80 GRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY----------------N 142 (211)
Q Consensus 80 ~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~----------------~ 142 (211)
+.|.+ .+-+.| -+.-....+.+.+..+.+.. +-+|-+||+.-.|=+.+-..+.+ ... +
T Consensus 164 ~~Gad--~I~i~Dt~G~l~P~~v~~Lv~~lk~~~--~vpI~~H~Hnt~GlA~AN~laAi-eaGad~vD~sv~~~g~gagN 238 (467)
T PRK14041 164 DMGVD--SICIKDMAGLLTPKRAYELVKALKKKF--GVPVEVHSHCTTGLASLAYLAAV-EAGADMFDTAISPFSMGTSQ 238 (467)
T ss_pred HcCCC--EEEECCccCCcCHHHHHHHHHHHHHhc--CCceEEEecCCCCcHHHHHHHHH-HhCCCEEEeeccccCCCCCC
Confidence 44544 455667 55555666777777666554 47899999876664444332221 110 2
Q ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcC
Q psy15942 143 MNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGS 178 (211)
Q Consensus 143 ~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~ 178 (211)
.+.++.+..++..--....+...+..+.+|.+.++.
T Consensus 239 ~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~ 274 (467)
T PRK14041 239 PPFESMYYAFRENGKETDFDRKALKFLVEYFTKVRE 274 (467)
T ss_pred hhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 456666777765422234555555555555554443
No 153
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=24.86 E-value=2.5e+02 Score=25.45 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcC-CeEEEEcC----------------CCCCchHHHHHHHHHHhCCC-----CHHHHHHHHHH------
Q psy15942 103 KGLEFIQKVAQSG-GVTYIHCK----------------AGRSRSATLTACYLIKNYNM-----NPDDAVKYITY------ 154 (211)
Q Consensus 103 ~~i~~i~~~~~~~-~~VlVHC~----------------~G~gRS~t~~~ayLm~~~~~-----~~~~A~~~vr~------ 154 (211)
.+++.|.+..++| .=+-|||. .=+||-|+|.++|++....- .+++.++..+.
T Consensus 144 ~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 144 DLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeee
Confidence 3445555555555 56999994 23699999999999876543 23344444443
Q ss_pred ----hCCCCCCC---HHHHHHHHHH
Q psy15942 155 ----KRKQIRIT---KTEKAQIDQC 172 (211)
Q Consensus 155 ----~Rp~~~~~---~~q~~~L~~~ 172 (211)
.||+.... ..|+..|...
T Consensus 224 LGDglRPG~i~Da~D~aQi~El~~l 248 (431)
T PRK13352 224 LGDGLRPGCIADATDRAQIQELITL 248 (431)
T ss_pred ccCCcCCCccccCCcHHHHHHHHHH
Confidence 48875444 4555555544
No 154
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=24.83 E-value=88 Score=21.92 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcC
Q psy15942 101 IEKGLEFIQKVAQSGGVTYIHCK 123 (211)
Q Consensus 101 l~~~i~~i~~~~~~~~~VlVHC~ 123 (211)
+.++.+.++.+...|-++.+||.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 66777778888888999999996
No 155
>KOG0235|consensus
Probab=24.83 E-value=3.6e+02 Score=22.05 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHHH----HcCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHH
Q psy15942 97 SLYAIEKGLEFIQKVA----QSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAV 149 (211)
Q Consensus 97 ~~~~l~~~i~~i~~~~----~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~ 149 (211)
+...+..++.+.++.+ .+|+.|+|+|++..=| ++++...|.+.++..
T Consensus 134 L~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR------~i~~~l~g~s~~~i~ 184 (214)
T KOG0235|consen 134 LKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLR------AIVKHLEGISDEAIK 184 (214)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHH------HHHHHHhcCCHhhhh
Confidence 4445566666666554 4588999999773222 234444577666544
No 156
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.70 E-value=4.1e+02 Score=22.12 Aligned_cols=52 Identities=8% Similarity=-0.015 Sum_probs=34.0
Q ss_pred cCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH
Q psy15942 80 GRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLT 133 (211)
Q Consensus 80 ~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~ 133 (211)
+.|.. .+-+.| .+.-.+..+.+.+..+.+....+.++-+||+.-.|=+.+-+
T Consensus 149 ~~g~~--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~ 201 (266)
T cd07944 149 EIKPD--VFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANT 201 (266)
T ss_pred hCCCC--EEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHH
Confidence 34444 455557 56666677878777777655544789999997766544433
No 157
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=24.61 E-value=59 Score=24.15 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCCch
Q psy15942 83 VAHLQLDTIEFEAPSLYAIEKGLEFIQKVA-QSGGVTYIHCKAGRSRS 129 (211)
Q Consensus 83 i~~~~~p~~D~~~~~~~~l~~~i~~i~~~~-~~~~~VlVHC~~G~gRS 129 (211)
.+...+-++|. .+..+++.|.... ...++++|||++..+-.
T Consensus 69 aDlv~iavpDd------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 69 ADLVFIAVPDD------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp -SEEEE-S-CC------HHHHHHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred CCEEEEEechH------HHHHHHHHHHHhccCCCCcEEEECCCCChHH
Confidence 45666666664 4666665555431 12479999998876543
No 158
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=24.46 E-value=82 Score=25.33 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=19.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHh
Q psy15942 134 ACYLIKNYNMNPDDAVKYITYK 155 (211)
Q Consensus 134 ~ayLm~~~~~~~~~A~~~vr~~ 155 (211)
=+.||..+|++-++|++.+|..
T Consensus 151 KglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 4568999999999999999975
No 159
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=24.40 E-value=99 Score=27.01 Aligned_cols=17 Identities=29% Similarity=0.690 Sum_probs=13.0
Q ss_pred HHHHcCCeEEEEcCCCC
Q psy15942 110 KVAQSGGVTYIHCKAGR 126 (211)
Q Consensus 110 ~~~~~~~~VlVHC~~G~ 126 (211)
+.+..|..||.||.+|.
T Consensus 132 ~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 132 ELIKNGARILTHCNAGA 148 (329)
T ss_pred HHcCCCCEEEEeCCCCc
Confidence 33456788999999885
No 160
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=24.35 E-value=1e+02 Score=26.93 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCCch----HHHHHHHHHHhCC
Q psy15942 113 QSGGVTYIHCKAGRSRS----ATLTACYLIKNYN 142 (211)
Q Consensus 113 ~~~~~VlVHC~~G~gRS----~t~~~ayLm~~~~ 142 (211)
.+|..||=||.+|.=-| .++...+..+..|
T Consensus 148 ~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~g 181 (346)
T COG0182 148 PDGDTVLTHCNAGALATVGYGTALGVIRSAHEEG 181 (346)
T ss_pred ccCCeEEeeecCCceeecCccchHHHHHHHHHCC
Confidence 35788999999884222 2445555666554
No 161
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=24.28 E-value=1.7e+02 Score=17.54 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhCCC--CHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy15942 129 SATLTACYLIKNYNM--NPDDAVKYITYKRKQIRITKTEKAQID 170 (211)
Q Consensus 129 S~t~~~ayLm~~~~~--~~~~A~~~vr~~Rp~~~~~~~q~~~L~ 170 (211)
+||+.+....++.|+ ...++++.+ .+.+...++..++++.
T Consensus 3 ~GTlGiL~~Ak~~GlI~~~~~~l~~l--~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 3 TGTLGILLLAKRRGLISEVKPLLDRL--QQAGFRISPKLIEEIL 44 (48)
T ss_pred eehHHHHHHHHHcCChhhHHHHHHHH--HHcCcccCHHHHHHHH
Confidence 367777777787777 567777777 4455677777776654
No 162
>KOG1903|consensus
Probab=23.85 E-value=73 Score=24.97 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCC-CCCChhhhhhc----cCCcCcccc
Q psy15942 152 ITYKRKQIRITKTEKAQIDQCYNIYGSADGSTRAPFR-SFPLSKWQLER----TPLVHFFKV 208 (211)
Q Consensus 152 vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~r----~~~~~~~~~ 208 (211)
.+-++|...+.+..++.|..|-+.......+...+.+ +.|-...+.-| |.++-|+||
T Consensus 105 ~~ykkPt~L~Ap~Ym~lLMDWIE~~INnE~vFPt~~~vpFPKnF~qi~~KILtRLFRVFVHV 166 (217)
T KOG1903|consen 105 RKYKKPTALSAPRYMALLMDWIEVQINNEEVFPTSVGVPFPKNFLQICKKILTRLFRVFVHV 166 (217)
T ss_pred ccccCCccCCcHHHHHHHHHHHHHhccccccccccCCCCCcHhHHHHHHHHHHHHHHHHhhh
Confidence 3457899999999999999997777776777776666 66655555544 444455554
No 163
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=23.42 E-value=1.2e+02 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHH
Q psy15942 100 AIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACY 136 (211)
Q Consensus 100 ~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ay 136 (211)
.++++.+.+.......+.|.||=.+|+|-|.....++
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~ 40 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVA 40 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecc
Confidence 4566666666544455789999999999996665544
No 164
>KOG1679|consensus
Probab=23.33 E-value=2e+02 Score=23.86 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=45.2
Q ss_pred ccCCceEEEEEcCCCCCCcH-HHHHHHHHHHHHHHHcC-CeEEEEcCCCCCchHHHHH-HHHHHhCCCCHHHHHHHHHHh
Q psy15942 79 EGRGVAHLQLDTIEFEAPSL-YAIEKGLEFIQKVAQSG-GVTYIHCKAGRSRSATLTA-CYLIKNYNMNPDDAVKYITYK 155 (211)
Q Consensus 79 ~~~~i~~~~~p~~D~~~~~~-~~l~~~i~~i~~~~~~~-~~VlVHC~~G~gRS~t~~~-ayLm~~~~~~~~~A~~~vr~~ 155 (211)
.+.||..+.+.-+-...... ..++.+.+.+++...+. -+|+|- +.++- |.||+ |-|-.+.+++..|+-.+|...
T Consensus 37 ~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~Rvvil-rS~vp--gvFCaGADLKER~~Ms~~Ev~~fV~~l 113 (291)
T KOG1679|consen 37 KDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVIL-RSLVP--GVFCAGADLKERKTMSPSEVTRFVNGL 113 (291)
T ss_pred CCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEE-ecCCC--ceeecCcchHhhhcCCHHHHHHHHHHH
Confidence 35688887776555322222 23445555555555543 344444 33322 46665 446666699999999999988
Q ss_pred CC
Q psy15942 156 RK 157 (211)
Q Consensus 156 Rp 157 (211)
|.
T Consensus 114 R~ 115 (291)
T KOG1679|consen 114 RG 115 (291)
T ss_pred HH
Confidence 76
No 165
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=23.21 E-value=68 Score=22.30 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=11.7
Q ss_pred CeEEEEcCCCCCch
Q psy15942 116 GVTYIHCKAGRSRS 129 (211)
Q Consensus 116 ~~VlVHC~~G~gRS 129 (211)
.+|+|-|.+|++=|
T Consensus 3 ~kILvvCgsG~~TS 16 (94)
T PRK10310 3 RKIIVACGGAVATS 16 (94)
T ss_pred CeEEEECCCchhHH
Confidence 37999999999844
No 166
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=22.88 E-value=6.7e+02 Score=23.89 Aligned_cols=96 Identities=7% Similarity=-0.023 Sum_probs=54.9
Q ss_pred cCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhC----------------C
Q psy15942 80 GRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY----------------N 142 (211)
Q Consensus 80 ~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~----------------~ 142 (211)
+.|.+ .+-+.| -+.-....+.+.+..+++.. +-+|-+||+.-.|=+.+-..+.+ ... +
T Consensus 165 ~~Gad--~I~IkDtaG~l~P~~v~~lv~alk~~~--~ipi~~H~Hnt~Gla~an~laAi-eaGad~iD~ai~glGg~tGn 239 (596)
T PRK14042 165 EMGCD--SIAIKDMAGLLTPTVTVELYAGLKQAT--GLPVHLHSHSTSGLASICHYEAV-LAGCNHIDTAISSFSGGASH 239 (596)
T ss_pred HcCCC--EEEeCCcccCCCHHHHHHHHHHHHhhc--CCEEEEEeCCCCCcHHHHHHHHH-HhCCCEEEeccccccCCCCc
Confidence 55654 566778 56666677777777777654 47899999876654433222111 100 2
Q ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy15942 143 MNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGSAD 180 (211)
Q Consensus 143 ~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~ 180 (211)
.+.++.+..++..--....+...+..+.+|.+.+++..
T Consensus 240 ~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~~y 277 (596)
T PRK14042 240 PPTEALVAALTDTPYDTELDLNILLEIDDYFKAVRKKY 277 (596)
T ss_pred HhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35566666676543334555556666666655554433
No 167
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=22.75 E-value=2.9e+02 Score=24.95 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcC-CeEEEEcC----------------CCCCchHHHHHHHHHHhCCC-C----HHHHHHHHHH------
Q psy15942 103 KGLEFIQKVAQSG-GVTYIHCK----------------AGRSRSATLTACYLIKNYNM-N----PDDAVKYITY------ 154 (211)
Q Consensus 103 ~~i~~i~~~~~~~-~~VlVHC~----------------~G~gRS~t~~~ayLm~~~~~-~----~~~A~~~vr~------ 154 (211)
.+++.|.+..++| .=+-|||. .=+||-|++.++|++....- + +++.++..+.
T Consensus 141 ~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlS 220 (423)
T TIGR00190 141 DMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLS 220 (423)
T ss_pred HHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeee
Confidence 4455556555665 56999995 22689999999999886643 2 3334444443
Q ss_pred ----hCCCCCCC---HHHHHHHHHH
Q psy15942 155 ----KRKQIRIT---KTEKAQIDQC 172 (211)
Q Consensus 155 ----~Rp~~~~~---~~q~~~L~~~ 172 (211)
.||+.... ..|+..|...
T Consensus 221 LGDglRPG~i~DA~D~aQi~El~~l 245 (423)
T TIGR00190 221 LGDGLRPGCIADATDRAQISELITL 245 (423)
T ss_pred ccCCcCCCccccCCcHHHHHHHHHH
Confidence 48875544 4455544444
No 168
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=21.94 E-value=1.6e+02 Score=25.11 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCC
Q psy15942 99 YAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144 (211)
Q Consensus 99 ~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~ 144 (211)
+.+.++++.+.+.+.+|++|++-=.+|-||-+..-++-+.-..+++
T Consensus 42 ~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~ 87 (296)
T PRK12570 42 PQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVS 87 (296)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCC
Confidence 4566777777778888888777633333333333333333333443
No 169
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=21.93 E-value=87 Score=18.00 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHhCC
Q psy15942 129 SATLTACYLIKNYN 142 (211)
Q Consensus 129 S~t~~~ayLm~~~~ 142 (211)
.|.|++||+-++.|
T Consensus 19 ~GlfvaAylQYrRg 32 (37)
T CHL00008 19 AGLFVTAYLQYRRG 32 (37)
T ss_pred HHHHHHHHHHHhhc
Confidence 47889999887765
No 170
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=21.93 E-value=87 Score=17.99 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhCC
Q psy15942 129 SATLTACYLIKNYN 142 (211)
Q Consensus 129 S~t~~~ayLm~~~~ 142 (211)
+|.|++||+-++.|
T Consensus 19 ~GlfvaAylQYrRg 32 (37)
T PRK00665 19 AGLFVAAWNQYKRG 32 (37)
T ss_pred HHHHHHHHHHHhcc
Confidence 57888999887664
No 171
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=21.80 E-value=1.2e+02 Score=21.69 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCChh
Q psy15942 159 IRITKTEKAQIDQCYNIYGSADGSTRAPFRSFPLSK 194 (211)
Q Consensus 159 ~~~~~~q~~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 194 (211)
+.|-.+|++.|+.+-+-+...-+++.++++++|.-+
T Consensus 33 v~pi~Eqi~kLe~~vddl~~sldPstp~lnS~PgRe 68 (108)
T COG4062 33 VDPIEEQIKKLETLVDDLENSLDPSTPPLNSFPGRE 68 (108)
T ss_pred ccHHHHHHHHHHHHHHHHHhccCCCCCCcccCCCcc
Confidence 456678899999998889888899999999999644
No 172
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=21.68 E-value=4.7e+02 Score=22.28 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCC-c-------hHHHHHHHHHHhC--------CCCHHHHHHHHHHhCC
Q psy15942 103 KGLEFIQKVAQSGGVTYIHCKAGRS-R-------SATLTACYLIKNY--------NMNPDDAVKYITYKRK 157 (211)
Q Consensus 103 ~~i~~i~~~~~~~~~VlVHC~~G~g-R-------S~t~~~ayLm~~~--------~~~~~~A~~~vr~~Rp 157 (211)
.+.+.+..+.+.|.+|+|||...-- . ..+..++.+.... .++-.++++.++..|.
T Consensus 114 ~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~ 184 (335)
T cd01294 114 KIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNE 184 (335)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCCC
Confidence 3444445555668999999976421 1 0112234444432 5788899999988773
No 173
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=21.58 E-value=1.3e+02 Score=24.98 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHH---HHHHHhCCC
Q psy15942 99 YAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTA---CYLIKNYNM 143 (211)
Q Consensus 99 ~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~---ayLm~~~~~ 143 (211)
+.+.++++.+-+.+.+|++|++- |.|-||.+++ ..+.-..|.
T Consensus 33 ~~I~~av~~~~~~l~~ggrl~~~---GaGtSg~la~~da~e~~~tfg~ 77 (257)
T cd05007 33 PQIARAVDAAAERLRAGGRLIYV---GAGTSGRLGVLDASELPPTFGT 77 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---cCcHHHHHHHHHHHhccccccC
Confidence 45677777777888888887665 5666666664 333334455
No 174
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=21.46 E-value=1.4e+02 Score=28.82 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=31.9
Q ss_pred cCCeEEEEcCCCCCchHHHH--HHHHHHhCCCCHH---------HHHHHHHHh
Q psy15942 114 SGGVTYIHCKAGRSRSATLT--ACYLIKNYNMNPD---------DAVKYITYK 155 (211)
Q Consensus 114 ~~~~VlVHC~~G~gRS~t~~--~ayLm~~~~~~~~---------~A~~~vr~~ 155 (211)
..|+++|--.+|-|.|-+++ ++||+...|+++. .|.+.++.+
T Consensus 21 ~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~R 73 (721)
T PRK11773 21 PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHR 73 (721)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHH
Confidence 36899999999999998888 6888876676663 455555554
No 175
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=20.90 E-value=2.2e+02 Score=25.70 Aligned_cols=113 Identities=15% Similarity=0.096 Sum_probs=54.8
Q ss_pred hhcCceEEEEeeccc-ccc-----cccCCceEEEEEcCC-----CCCCcHHHHHHHHHHHHHHHHcC-CeEEEEcC----
Q psy15942 60 AEFNLCIARDILCMR-KAE-----WEGRGVAHLQLDTIE-----FEAPSLYAIEKGLEFIQKVAQSG-GVTYIHCK---- 123 (211)
Q Consensus 60 ~~~~i~~i~~~~~~~-~~~-----~~~~~i~~~~~p~~D-----~~~~~~~~l~~~i~~i~~~~~~~-~~VlVHC~---- 123 (211)
.+++-+.+.+.-..- -.. .....+-.-.+|+.+ ......-..+.+++.|.+..++| .=+.|||.
T Consensus 86 ~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~~ 165 (420)
T PF01964_consen 86 EKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITRE 165 (420)
T ss_dssp HHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--GG
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhHH
Confidence 456767776653321 111 123345555666533 11122223456667777776766 57999995
Q ss_pred ------------CCCCchHHHHHHHHHHhCCC-----CHHHHHHHHHH----------hCCCCCCC---HHHHHHHHHH
Q psy15942 124 ------------AGRSRSATLTACYLIKNYNM-----NPDDAVKYITY----------KRKQIRIT---KTEKAQIDQC 172 (211)
Q Consensus 124 ------------~G~gRS~t~~~ayLm~~~~~-----~~~~A~~~vr~----------~Rp~~~~~---~~q~~~L~~~ 172 (211)
.=+||.|++.++|++....- .+++.++..|. .||+.... ..|+..|...
T Consensus 166 ~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL~~l 244 (420)
T PF01964_consen 166 TLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQELIIL 244 (420)
T ss_dssp GGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHHHHH
T ss_pred HHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHHHHH
Confidence 23699999999999987644 33444555543 47875443 4555555544
No 176
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.80 E-value=3.5e+02 Score=24.24 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHcCCeEEEEcCCCCCch-H-HHHHHHHHHhCCCCHHHHHHHHHHh
Q psy15942 108 IQKVAQSGGVTYIHCKAGRSRS-A-TLTACYLIKNYNMNPDDAVKYITYK 155 (211)
Q Consensus 108 i~~~~~~~~~VlVHC~~G~gRS-~-t~~~ayLm~~~~~~~~~A~~~vr~~ 155 (211)
+..+++.|-+|.+.+-.|.+.+ + ....+.++.+.++++.||++.+-..
T Consensus 299 ~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~~gmtp~EaL~a~T~n 348 (406)
T COG1228 299 ARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVRLGMTPEEALKAATIN 348 (406)
T ss_pred HHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5666678999999999999984 2 2233445555689999999877543
No 177
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=20.74 E-value=6.9e+02 Score=23.23 Aligned_cols=95 Identities=6% Similarity=0.018 Sum_probs=52.9
Q ss_pred cCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhC----------------C
Q psy15942 80 GRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY----------------N 142 (211)
Q Consensus 80 ~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~----------------~ 142 (211)
+.|.+ .+-+.| -+.-....+.+.+..+.+....+-+|-+||+.-.|-+.+-..+.+ ... +
T Consensus 166 ~~Gad--~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAi-eAGad~vDtai~Glg~~aGn 242 (499)
T PRK12330 166 DMGAD--SICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAI-EAGVDVVDTAISSMSLGPGH 242 (499)
T ss_pred HcCCC--EEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHH-HcCCCEEEeecccccccccc
Confidence 45554 556667 555566677777777776553357899999976664443322211 100 2
Q ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q psy15942 143 MNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYG 177 (211)
Q Consensus 143 ~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~ 177 (211)
.+.++.+..++..--....+...+..+.+|.+.++
T Consensus 243 ~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr 277 (499)
T PRK12330 243 NPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVR 277 (499)
T ss_pred hhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 35566666676542223455555555555544444
No 178
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=20.67 E-value=1.6e+02 Score=17.12 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q psy15942 130 ATLTACYLIKNYNMNPDDAVKYITY 154 (211)
Q Consensus 130 ~t~~~ayLm~~~~~~~~~A~~~vr~ 154 (211)
...+..| +...+|+++.|+...=.
T Consensus 15 ~~~A~~~-L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 15 EDVAIQY-LEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHH-HHHTTT-HHHHHHHHHH
T ss_pred HHHHHHH-HHHcCCCHHHHHHHHHh
Confidence 3444444 44579999999876543
No 179
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=20.58 E-value=85 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCCchHHHHHHHHHHhCCC
Q psy15942 116 GVTYIHCKAGRSRSATLTACYLIKNYNM 143 (211)
Q Consensus 116 ~~VlVHC~~G~gRS~t~~~ayLm~~~~~ 143 (211)
.+|+|||..| .||.. ++.+|. ..|+
T Consensus 333 ~~Ivv~C~sG-~RS~~-Aa~~L~-~~G~ 357 (370)
T PRK05600 333 DNVVVYCASG-IRSAD-FIEKYS-HLGH 357 (370)
T ss_pred CcEEEECCCC-hhHHH-HHHHHH-HcCC
Confidence 4899999999 57754 444443 3565
No 180
>KOG1351|consensus
Probab=20.56 E-value=5e+02 Score=22.69 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=58.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy15942 93 FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRITKTEKAQIDQC 172 (211)
Q Consensus 93 ~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~~~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~ 172 (211)
...|....+...-++++.++.+|-.--=|. .=|--+-|+|.+ |-+. +|++.|-.--.-.....-.+++|.+|
T Consensus 365 ~iyppinvlpslsrlmksaigegmtr~dh~----dvsnqlya~yai---gkdv-qamkavvgeeals~ed~l~lefl~kf 436 (489)
T KOG1351|consen 365 QIYPPINVLPSLSRLMKSAIGEGMTRKDHS----DVSNQLYACYAI---GKDV-QAMKAVVGEEALSSEDLLYLEFLDKF 436 (489)
T ss_pred cCCCCcccchhHHHHHHHHhcCCcccccch----hhHHHHHHHHHh---cchH-HHHHHHhcccccChhhhHHHHHHHHH
Confidence 344555567777778888887753222221 123455566655 3332 34444433333345566788999999
Q ss_pred HHHhcCCCCCCCCCCCCCCChhhhhhc
Q psy15942 173 YNIYGSADGSTRAPFRSFPLSKWQLER 199 (211)
Q Consensus 173 ~~~l~~~~~~~~~~~~~~~~~~~~~~r 199 (211)
|+.............-+.-...|+++|
T Consensus 437 ek~fi~qg~yenrtvfesldi~w~llr 463 (489)
T KOG1351|consen 437 EKNFISQGAYENRTVFESLDIAWQLLR 463 (489)
T ss_pred HHHHHhcCCccchhHHHHHHHHHHHHH
Confidence 999888777666665555444577766
No 181
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.06 E-value=7.6e+02 Score=23.46 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=55.7
Q ss_pred cCCceEEEEEcCC-CCCCcHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHHHHHHHhC----------------C
Q psy15942 80 GRGVAHLQLDTIE-FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY----------------N 142 (211)
Q Consensus 80 ~~~i~~~~~p~~D-~~~~~~~~l~~~i~~i~~~~~~~~~VlVHC~~G~gRS~t~~~ayLm~~~----------------~ 142 (211)
+.|.+ .+-+.| .+.-....+.+.+..+.+.. +.+|-+||+.-.|=+.+-..+.+ ... +
T Consensus 166 ~~Gad--~i~i~Dt~G~l~P~~~~~lv~~lk~~~--~~pi~~H~Hnt~GlA~An~laAi-eAGa~~vD~ai~glG~~~Gn 240 (593)
T PRK14040 166 DMGVD--SLCIKDMAGLLKPYAAYELVSRIKKRV--DVPLHLHCHATTGLSTATLLKAI-EAGIDGVDTAISSMSMTYGH 240 (593)
T ss_pred HcCCC--EEEECCCCCCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCchHHHHHHHHH-HcCCCEEEeccccccccccc
Confidence 44544 556667 55566677777777777655 47899999876654433222211 100 2
Q ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy15942 143 MNPDDAVKYITYKRKQIRITKTEKAQIDQCYNIYGSAD 180 (211)
Q Consensus 143 ~~~~~A~~~vr~~Rp~~~~~~~q~~~L~~~~~~l~~~~ 180 (211)
.+.++.+..++..--....+...+..+.+|...++...
T Consensus 241 ~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~~~Y 278 (593)
T PRK14040 241 SATETLVATLEGTERDTGLDILKLEEIAAYFREVRKKY 278 (593)
T ss_pred hhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 46666677776532223456666666777666555433
Done!