RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15942
(211 letters)
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 72.7 bits (179), Expect = 1e-16
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 85 HLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144
+ ++ S Y + + +EFI Q GG +HC+AG SRSATL YL+K N++
Sbjct: 42 GIPVEDNHETNISKY-LPEAVEFIDDAIQKGGKVLVHCQAGISRSATLIIAYLMKTRNLS 100
Query: 145 PDDAVKYITYKRKQIR 160
++A ++ +R I
Sbjct: 101 LNEAYSFVKERRPIIS 116
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 71.2 bits (175), Expect = 5e-16
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 85 HLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144
+ +D S Y + +EFI+ GG +HC+AG SRSATL YL+K NM+
Sbjct: 49 GVPIDDNTETKISPY-FPEAVEFIEDAESKGGKVLVHCQAGVSRSATLIIAYLMKTRNMS 107
Query: 145 PDDAVKYITYKRKQIR 160
+DA ++ +R I
Sbjct: 108 LNDAYDFVKDRRPIIS 123
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 65.7 bits (161), Expect = 5e-14
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 106 EFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIR 160
+FI + GG +HC AG SRSATL YL+K ++ +A +++ +R I
Sbjct: 72 DFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIIS 126
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 55.2 bits (133), Expect = 1e-09
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 82 GVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY 141
G+ L L ++ P L ++K ++FI++ G +HC+ G RS T+ A YL+
Sbjct: 72 GIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYG 131
Query: 142 N-MNPDDAVKYITYKRK 157
D+A+ +R
Sbjct: 132 GLSLADEAIAVKRRRRP 148
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 43.9 bits (104), Expect = 1e-05
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 120 IHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRK------QIRITKTEKAQ 168
+HC AG R+ L A L++ M P DAV ++ KRK Q++ K K +
Sbjct: 103 VHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAINQTQLQFLKKYKPR 157
>gnl|CDD|240399 PTZ00393, PTZ00393, protein tyrosine phosphatase; Provisional.
Length = 241
Score = 42.2 bits (99), Expect = 7e-05
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 94 EAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYIT 153
+AP++ + L + V ++ +HC AG R+ L + LI+ + M+P DA+ +I
Sbjct: 149 DAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIR 207
Query: 154 YKRK 157
+RK
Sbjct: 208 DRRK 211
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 36.2 bits (84), Expect = 0.002
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 105 LEFIQKV------AQSGGVTYIHCKAGRSRSATLTACYLI------KNYNMNPDDAVKYI 152
LE ++ V ++S G +HC AG R+ T A ++ + ++ D VK +
Sbjct: 23 LELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDIFDTVKEL 82
Query: 153 TYKRKQIRITKTEKAQIDQCYNI 175
R Q + Q Y
Sbjct: 83 ---RSQRPGMVQTEEQYLFLYRA 102
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 36.2 bits (84), Expect = 0.002
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 105 LEFIQKV------AQSGGVTYIHCKAGRSRSATLTACYLI------KNYNMNPDDAVKYI 152
LE ++ V ++S G +HC AG R+ T A ++ + ++ D VK +
Sbjct: 23 LELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDIFDTVKEL 82
Query: 153 TYKRKQIRITKTEKAQIDQCYNI 175
R Q + Q Y
Sbjct: 83 ---RSQRPGMVQTEEQYLFLYRA 102
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 36.1 bits (84), Expect = 0.009
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 95 APSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLI-KNYNMNPDDAVKYIT 153
P+L + + + +I + ++ +HC GR RS + A YL+ K+ ++ ++ ++ I
Sbjct: 155 VPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIK 214
Query: 154 YKRKQIRITK 163
RK R+ K
Sbjct: 215 QIRKTARLNK 224
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 32.3 bits (74), Expect = 0.13
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 105 LEFIQKVAQSGGVTY-----IHCKAGRSRSATL----TACYLIKNYN-MNPDDAVKYITY 154
L+ I+KV +S +HC AG R+ T ++ ++ VK +
Sbjct: 153 LDLIRKVRKSQADPRSGPIVVHCSAGVGRTGTFIAIDILLQQLEAEGEVDVFQIVKEL-- 210
Query: 155 KRKQ 158
R Q
Sbjct: 211 -RSQ 213
>gnl|CDD|225633 COG3091, SprT, Zn-dependent metalloprotease, SprT family [General
function prediction only].
Length = 156
Score = 31.5 bits (72), Expect = 0.14
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 73 MRKAEWEGR----GVAHLQLDTIEFEAPSLYAIEKGLEFIQKV 111
KA + R G A+L I P L E G +FI++V
Sbjct: 24 RPKASYNQRGRTAGGAYLLKSEIRLN-PKLL-EENGEDFIEQV 64
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 31.7 bits (72), Expect = 0.25
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 79 EGRGVAHLQLDT-IEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYL 137
+ + H Q ++F P + ++ + + + G +HC AG R+ T A +
Sbjct: 181 PPKKIHHFQYINWVDFNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDI 240
Query: 138 IK-----------NYNMNPDDAVKYITYKRKQIRITKTEKAQIDQCYNI 175
+ + D + + R Q K Q Y+
Sbjct: 241 LLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYDA 289
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 31.5 bits (72), Expect = 0.27
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 105 LEFIQKVAQSGGV----TYIHCKAGRSRSATL-TACYLI----KNYNMNPDDAVKYITYK 155
L+ I+ V +S +HC AG R+ T L+ ++ + VK +
Sbjct: 180 LDLIRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKEL--- 236
Query: 156 RKQ 158
R Q
Sbjct: 237 RSQ 239
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 30.1 bits (68), Expect = 0.65
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 119 YIHCKAGRSRSATLTACYLI 138
IHC AG+ R+ + A Y
Sbjct: 140 LIHCTAGKDRTGLVAALYRK 159
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 29.5 bits (67), Expect = 0.94
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 105 LEFIQKVAQSGGVTY-----IHCKAGRSRSATL----TACYLIKNYN-MNPDDAVKYITY 154
L+ ++KV +S +HC AG R+ T ++ ++ VK +
Sbjct: 151 LDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKEL-- 208
Query: 155 KRKQ 158
R Q
Sbjct: 209 -RSQ 211
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 30.0 bits (67), Expect = 0.95
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 79 EGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLI 138
+G + + I E P L ++ I +A G+ +I G +S L A +I
Sbjct: 98 DGHDAIQITIRAIPAEPPKLSKLDLPAAIIDAIAPQEGIVFITGATGSGKSTLLAA--II 155
Query: 139 KNYNMNPDDAVKYITYK 155
+ PD K +TY+
Sbjct: 156 RELAEAPDSHRKILTYE 172
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 27.9 bits (63), Expect = 3.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 111 VAQSGGVTYIHCKAGRSR 128
+A+S G IH GR+R
Sbjct: 44 IARSLGAKVIHSPKGRAR 61
>gnl|CDD|132073 TIGR03028, EpsE, polysaccharide export protein EpsE. Sequences in
this family of proteins are members of a polysaccharide
export protein family (pfam02563) which includes the wza
protein from E.coli. This family of proteins are
homologous to the EpsE protein of the methanolan
biosynthesis operon of Methylobacillus species strain
12S. The distribution of this protein appears to be
restricted to a subset of exopolysaccharide operons
containing a syntenic grouping of genes including a
variant of the EpsH exosortase protein. Exosortase has
been proposed to be involved in the targetting and
processing of proteins containing the PEP-CTERM domain
to the exopolysaccharide layer.
Length = 239
Score = 27.8 bits (62), Expect = 4.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 92 EFEAPSLYAIEKGLEFIQKVAQSGGVT 118
E + P Y +E+ + +Q +AQ GG+T
Sbjct: 170 EVQRPGAYRLERNMTVMQALAQGGGLT 196
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 26.7 bits (59), Expect = 6.8
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 84 AHLQL---DTIE----FEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACY 136
HL L D E + AP + ++F + + + IHC AG SRS TA
Sbjct: 56 RHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLL-IHCYAGISRS---TAAA 111
Query: 137 LIKNYNMNPD 146
LI + PD
Sbjct: 112 LIAALALAPD 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.132 0.393
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,291,346
Number of extensions: 918951
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 27
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)