Query psy15946
Match_columns 251
No_of_seqs 288 out of 2028
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 17:06:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03031 GRX_GRX_like Glutaredo 100.0 3.6E-51 7.8E-56 329.5 14.9 145 103-248 1-147 (147)
2 KOG2824|consensus 100.0 2.8E-49 6E-54 339.8 12.1 149 100-251 129-279 (281)
3 cd03030 GRX_SH3BGR Glutaredoxi 99.9 1E-23 2.2E-28 157.3 8.7 88 104-191 2-91 (92)
4 PTZ00062 glutaredoxin; Provisi 99.9 7.2E-22 1.6E-26 167.5 14.3 147 25-192 20-200 (204)
5 PRK10824 glutaredoxin-4; Provi 99.9 5.7E-22 1.2E-26 153.4 8.7 93 99-194 12-104 (115)
6 TIGR00365 monothiol glutaredox 99.9 2.3E-21 4.9E-26 146.3 10.4 89 99-190 9-97 (97)
7 TIGR02189 GlrX-like_plant Glut 99.9 3.2E-21 6.9E-26 146.0 9.3 88 99-194 5-95 (99)
8 PHA03050 glutaredoxin; Provisi 99.8 8.5E-21 1.8E-25 145.8 9.5 89 99-195 10-104 (108)
9 cd03031 GRX_GRX_like Glutaredo 99.8 3.9E-21 8.6E-26 155.0 6.1 75 25-99 1-77 (147)
10 cd03028 GRX_PICOT_like Glutare 99.8 6.3E-20 1.4E-24 136.5 9.6 86 99-187 5-90 (90)
11 TIGR02181 GRX_bact Glutaredoxi 99.8 2.4E-19 5.1E-24 129.6 9.4 79 104-190 1-79 (79)
12 PRK10638 glutaredoxin 3; Provi 99.8 2.9E-19 6.2E-24 130.7 9.9 82 102-191 2-83 (83)
13 KOG1752|consensus 99.8 2E-18 4.4E-23 131.1 9.0 88 99-194 11-101 (104)
14 COG0278 Glutaredoxin-related p 99.8 2.3E-18 4.9E-23 127.5 8.4 93 98-193 11-104 (105)
15 cd03027 GRX_DEP Glutaredoxin ( 99.7 7.4E-18 1.6E-22 120.2 8.5 73 102-182 1-73 (73)
16 cd03418 GRX_GRXb_1_3_like Glut 99.7 1.1E-17 2.5E-22 119.2 9.3 74 103-184 1-75 (75)
17 KOG2824|consensus 99.7 4.9E-18 1.1E-22 146.9 7.3 150 22-218 129-281 (281)
18 COG0695 GrxC Glutaredoxin and 99.7 7.2E-17 1.6E-21 117.5 7.9 76 103-186 2-79 (80)
19 TIGR02180 GRX_euk Glutaredoxin 99.7 1.5E-16 3.2E-21 115.5 9.3 79 104-190 1-84 (84)
20 cd03419 GRX_GRXh_1_2_like Glut 99.7 3.9E-16 8.4E-21 113.0 9.2 79 103-189 1-82 (82)
21 cd03029 GRX_hybridPRX5 Glutare 99.6 8.3E-16 1.8E-20 109.2 8.3 70 103-181 2-71 (72)
22 TIGR02183 GRXA Glutaredoxin, G 99.6 2E-15 4.4E-20 111.2 9.4 75 104-184 2-81 (86)
23 TIGR02190 GlrX-dom Glutaredoxi 99.6 2.1E-15 4.6E-20 109.2 8.8 73 99-180 5-77 (79)
24 PRK11200 grxA glutaredoxin 1; 99.6 3.5E-15 7.5E-20 109.5 9.3 75 103-183 2-81 (85)
25 PF04908 SH3BGR: SH3-binding, 99.6 1.3E-15 2.8E-20 114.7 7.1 88 104-191 3-97 (99)
26 TIGR00365 monothiol glutaredox 99.6 1.6E-15 3.4E-20 114.4 7.3 76 21-99 9-84 (97)
27 TIGR02189 GlrX-like_plant Glut 99.6 1.2E-15 2.6E-20 115.4 6.5 71 21-99 5-78 (99)
28 cd02066 GRX_family Glutaredoxi 99.6 5.4E-15 1.2E-19 103.1 8.7 72 103-182 1-72 (72)
29 PHA03050 glutaredoxin; Provisi 99.6 2.2E-15 4.7E-20 115.8 7.1 71 22-100 11-87 (108)
30 PRK10824 glutaredoxin-4; Provi 99.6 2.3E-15 5E-20 116.5 7.2 76 21-99 12-87 (115)
31 KOG0911|consensus 99.6 3.9E-15 8.4E-20 125.7 9.0 90 100-192 137-226 (227)
32 cd03030 GRX_SH3BGR Glutaredoxi 99.6 1.5E-15 3.3E-20 113.2 5.6 74 26-99 2-77 (92)
33 cd03027 GRX_DEP Glutaredoxin ( 99.6 3.6E-15 7.8E-20 106.2 7.1 67 25-99 2-68 (73)
34 TIGR02190 GlrX-dom Glutaredoxi 99.6 4.9E-15 1.1E-19 107.3 7.1 72 19-99 3-74 (79)
35 cd03028 GRX_PICOT_like Glutare 99.6 5.8E-15 1.3E-19 109.7 7.1 75 22-99 6-80 (90)
36 PRK10638 glutaredoxin 3; Provi 99.6 7.2E-15 1.6E-19 107.3 7.1 69 23-99 1-69 (83)
37 cd03418 GRX_GRXb_1_3_like Glut 99.5 1.5E-14 3.2E-19 103.0 7.0 68 25-99 1-68 (75)
38 COG0695 GrxC Glutaredoxin and 99.5 1.2E-14 2.6E-19 105.8 6.4 67 25-98 2-69 (80)
39 TIGR02181 GRX_bact Glutaredoxi 99.5 1.3E-14 2.9E-19 104.7 6.5 66 26-99 1-66 (79)
40 PF00462 Glutaredoxin: Glutare 99.5 2.4E-14 5.2E-19 98.0 7.4 60 104-171 1-60 (60)
41 PF00462 Glutaredoxin: Glutare 99.5 2E-14 4.4E-19 98.4 6.6 60 26-93 1-60 (60)
42 cd03029 GRX_hybridPRX5 Glutare 99.5 2.6E-14 5.5E-19 101.5 6.5 66 25-99 2-67 (72)
43 PRK11200 grxA glutaredoxin 1; 99.5 6.4E-14 1.4E-18 102.7 7.1 69 25-99 2-75 (85)
44 PRK10329 glutaredoxin-like pro 99.5 4.7E-14 1E-18 102.9 6.2 71 25-104 2-72 (81)
45 PRK12759 bifunctional gluaredo 99.5 1E-13 2.2E-18 129.6 9.2 86 101-194 1-92 (410)
46 TIGR02183 GRXA Glutaredoxin, G 99.5 1.4E-13 3E-18 101.4 6.9 68 26-99 2-74 (86)
47 TIGR02194 GlrX_NrdH Glutaredox 99.5 1.2E-13 2.6E-18 98.1 5.8 69 26-103 1-70 (72)
48 cd02066 GRX_family Glutaredoxi 99.4 4.6E-13 1E-17 93.2 6.6 67 25-99 1-67 (72)
49 PTZ00062 glutaredoxin; Provisi 99.4 8.4E-13 1.8E-17 112.1 7.2 76 21-99 110-185 (204)
50 PRK12759 bifunctional gluaredo 99.4 2.2E-12 4.7E-17 120.6 8.9 117 23-145 1-132 (410)
51 TIGR02194 GlrX_NrdH Glutaredox 99.3 3E-12 6.6E-17 90.9 6.7 64 104-176 1-65 (72)
52 KOG1752|consensus 99.3 3.6E-12 7.7E-17 96.9 6.6 71 21-99 11-84 (104)
53 cd03419 GRX_GRXh_1_2_like Glut 99.3 5E-12 1.1E-16 91.3 6.7 67 25-99 1-70 (82)
54 PRK10329 glutaredoxin-like pro 99.3 6.5E-12 1.4E-16 91.5 7.1 65 103-176 2-66 (81)
55 TIGR02180 GRX_euk Glutaredoxin 99.3 1.3E-11 2.7E-16 89.4 6.4 66 26-99 1-71 (84)
56 TIGR02196 GlrX_YruB Glutaredox 99.2 3.3E-11 7.1E-16 84.3 6.2 68 25-100 1-68 (74)
57 cd02976 NrdH NrdH-redoxin (Nrd 99.1 4.5E-10 9.8E-15 78.3 6.6 68 25-100 1-68 (73)
58 TIGR02196 GlrX_YruB Glutaredox 99.0 1.5E-09 3.2E-14 75.8 8.4 66 103-176 1-66 (74)
59 TIGR02200 GlrX_actino Glutared 99.0 2.1E-09 4.5E-14 76.2 6.8 64 25-95 1-65 (77)
60 cd02976 NrdH NrdH-redoxin (Nrd 98.9 3.7E-09 8E-14 73.7 7.6 66 103-176 1-66 (73)
61 COG0278 Glutaredoxin-related p 98.9 2.6E-09 5.7E-14 79.5 6.2 75 21-98 12-87 (105)
62 PF04908 SH3BGR: SH3-binding, 98.9 1.7E-09 3.7E-14 81.5 4.4 75 25-99 2-83 (99)
63 TIGR02200 GlrX_actino Glutared 98.8 2.2E-08 4.9E-13 70.8 6.9 64 103-174 1-66 (77)
64 cd02973 TRX_GRX_like Thioredox 98.7 2.6E-08 5.6E-13 69.1 5.4 57 25-93 2-63 (67)
65 KOG0911|consensus 98.6 1.1E-07 2.3E-12 80.8 7.2 74 22-98 137-210 (227)
66 cd02973 TRX_GRX_like Thioredox 98.6 1.5E-07 3.3E-12 65.2 6.0 58 103-172 2-64 (67)
67 cd03036 ArsC_like Arsenate Red 98.6 1.3E-07 2.9E-12 72.8 6.1 46 26-77 1-46 (111)
68 KOG4023|consensus 98.6 1.2E-07 2.7E-12 70.2 5.3 94 103-196 3-102 (108)
69 PRK01655 spxA transcriptional 98.5 3.4E-07 7.3E-12 72.6 8.0 45 26-76 2-46 (131)
70 TIGR02187 GlrX_arch Glutaredox 98.5 1.2E-06 2.5E-11 75.0 10.9 125 23-169 20-195 (215)
71 cd03041 GST_N_2GST_N GST_N fam 98.4 3.1E-06 6.6E-11 60.5 8.5 71 104-182 2-74 (77)
72 cd03041 GST_N_2GST_N GST_N fam 98.4 1.3E-06 2.8E-11 62.5 6.4 56 26-89 2-57 (77)
73 PRK12559 transcriptional regul 98.4 1.5E-06 3.2E-11 69.0 7.2 45 26-76 2-46 (131)
74 cd02977 ArsC_family Arsenate R 98.3 4.3E-07 9.3E-12 69.0 3.9 46 26-77 1-46 (105)
75 cd03035 ArsC_Yffb Arsenate Red 98.3 1.1E-06 2.5E-11 67.0 5.0 45 26-76 1-45 (105)
76 cd03032 ArsC_Spx Arsenate Redu 98.3 4.5E-06 9.7E-11 64.6 8.3 45 26-76 2-46 (115)
77 PRK13344 spxA transcriptional 98.3 2.8E-06 6.1E-11 67.5 6.9 45 26-76 2-46 (132)
78 cd03040 GST_N_mPGES2 GST_N fam 98.2 1E-05 2.2E-10 57.5 7.9 68 103-181 1-72 (77)
79 cd03037 GST_N_GRX2 GST_N famil 98.2 1.2E-05 2.5E-10 56.3 7.8 67 105-181 2-69 (71)
80 cd03040 GST_N_mPGES2 GST_N fam 98.2 6E-06 1.3E-10 58.7 6.3 54 25-89 1-54 (77)
81 cd00570 GST_N_family Glutathio 98.1 7.1E-06 1.5E-10 55.7 6.0 68 105-180 2-69 (71)
82 TIGR01617 arsC_related transcr 98.1 4E-06 8.7E-11 65.0 5.2 45 26-76 1-45 (117)
83 cd00570 GST_N_family Glutathio 98.1 3.9E-06 8.4E-11 57.0 3.8 61 27-95 2-62 (71)
84 COG1393 ArsC Arsenate reductas 98.1 2.5E-05 5.4E-10 60.8 8.2 102 25-173 2-106 (117)
85 cd03036 ArsC_like Arsenate Red 98.0 7.5E-06 1.6E-10 63.0 3.9 46 104-155 1-46 (111)
86 PF05768 DUF836: Glutaredoxin- 98.0 2.4E-05 5.1E-10 56.7 6.1 53 25-90 1-57 (81)
87 cd03060 GST_N_Omega_like GST_N 97.9 2.5E-05 5.3E-10 54.7 5.4 57 27-92 2-59 (71)
88 cd03033 ArsC_15kD Arsenate Red 97.9 1.5E-05 3.3E-10 61.6 4.5 45 26-76 2-46 (113)
89 cd02977 ArsC_family Arsenate R 97.9 1.1E-05 2.3E-10 61.2 3.6 46 104-155 1-46 (105)
90 cd03037 GST_N_GRX2 GST_N famil 97.9 2.9E-05 6.2E-10 54.3 5.4 59 27-95 2-61 (71)
91 TIGR01616 nitro_assoc nitrogen 97.9 4.5E-05 9.8E-10 60.1 7.1 46 25-76 2-47 (126)
92 TIGR00411 redox_disulf_1 small 97.9 3.1E-05 6.8E-10 55.2 5.6 55 25-91 2-62 (82)
93 cd03055 GST_N_Omega GST_N fami 97.9 5E-05 1.1E-09 55.8 6.7 72 100-180 15-87 (89)
94 cd03059 GST_N_SspA GST_N famil 97.8 8.5E-05 1.8E-09 51.8 7.1 69 104-181 1-69 (73)
95 cd03055 GST_N_Omega GST_N fami 97.8 5.7E-05 1.2E-09 55.5 6.4 61 23-92 16-77 (89)
96 cd03026 AhpF_NTD_C TRX-GRX-lik 97.8 4.2E-05 9E-10 56.6 5.2 59 23-93 13-76 (89)
97 cd03034 ArsC_ArsC Arsenate Red 97.8 4.6E-05 1E-09 58.7 5.7 45 26-76 1-45 (112)
98 TIGR00412 redox_disulf_2 small 97.8 5.7E-05 1.2E-09 54.0 5.8 55 25-93 2-60 (76)
99 cd03059 GST_N_SspA GST_N famil 97.8 3.8E-05 8.3E-10 53.6 4.7 56 26-90 1-56 (73)
100 PRK01655 spxA transcriptional 97.8 3.9E-05 8.4E-10 60.8 5.2 46 104-155 2-47 (131)
101 cd03060 GST_N_Omega_like GST_N 97.8 0.00011 2.4E-09 51.3 6.8 66 105-179 2-68 (71)
102 COG4545 Glutaredoxin-related p 97.7 8.7E-05 1.9E-09 52.5 5.5 60 25-90 3-72 (85)
103 cd03045 GST_N_Delta_Epsilon GS 97.7 7E-05 1.5E-09 52.5 4.7 58 26-91 1-60 (74)
104 cd03051 GST_N_GTT2_like GST_N 97.7 5.3E-05 1.1E-09 52.8 3.9 55 27-89 2-58 (74)
105 PRK10026 arsenate reductase; P 97.7 7.2E-05 1.6E-09 60.0 5.0 48 23-76 1-48 (141)
106 TIGR01617 arsC_related transcr 97.6 0.0001 2.2E-09 57.2 5.2 46 104-155 1-46 (117)
107 PF05768 DUF836: Glutaredoxin- 97.6 0.00042 9.1E-09 50.1 8.1 53 103-168 1-57 (81)
108 cd03051 GST_N_GTT2_like GST_N 97.6 0.00021 4.6E-09 49.6 6.1 67 105-179 2-71 (74)
109 cd03032 ArsC_Spx Arsenate Redu 97.6 0.00012 2.5E-09 56.7 5.0 46 104-155 2-47 (115)
110 PLN03165 chaperone protein dna 97.6 6.6E-05 1.4E-09 57.7 3.5 56 195-251 37-92 (111)
111 cd03056 GST_N_4 GST_N family, 97.6 0.00014 3E-09 50.6 5.0 59 26-92 1-61 (73)
112 PF13417 GST_N_3: Glutathione 97.6 0.00023 5.1E-09 50.3 5.9 68 106-182 1-68 (75)
113 cd03045 GST_N_Delta_Epsilon GS 97.5 0.0004 8.7E-09 48.5 6.9 67 105-179 2-70 (74)
114 PHA02125 thioredoxin-like prot 97.5 0.00017 3.8E-09 51.2 5.0 52 26-90 2-53 (75)
115 TIGR00411 redox_disulf_1 small 97.5 0.00048 1E-08 49.0 6.9 55 103-169 2-62 (82)
116 PRK12559 transcriptional regul 97.5 0.00014 3E-09 57.7 4.4 46 104-155 2-47 (131)
117 PRK13344 spxA transcriptional 97.5 0.00013 2.9E-09 57.9 4.3 45 104-154 2-46 (132)
118 cd03035 ArsC_Yffb Arsenate Red 97.5 0.00014 3E-09 55.4 3.9 46 104-155 1-46 (105)
119 cd03056 GST_N_4 GST_N family, 97.4 0.00075 1.6E-08 46.8 7.0 67 105-179 2-70 (73)
120 PRK10853 putative reductase; P 97.4 0.00022 4.8E-09 55.5 4.5 45 26-76 2-46 (118)
121 TIGR00014 arsC arsenate reduct 97.4 0.00023 5.1E-09 55.0 4.2 45 26-76 1-45 (114)
122 PF13417 GST_N_3: Glutathione 97.4 0.00026 5.5E-09 50.1 4.0 57 28-93 1-57 (75)
123 cd03033 ArsC_15kD Arsenate Red 97.4 0.00022 4.8E-09 55.1 3.9 46 104-155 2-47 (113)
124 TIGR03143 AhpF_homolog putativ 97.3 0.0023 5E-08 62.3 11.8 122 25-170 369-539 (555)
125 KOG3029|consensus 97.3 0.00042 9.2E-09 61.0 5.3 103 25-141 90-205 (370)
126 PHA02125 thioredoxin-like prot 97.2 0.00098 2.1E-08 47.3 6.0 53 104-169 2-54 (75)
127 cd03026 AhpF_NTD_C TRX-GRX-lik 97.2 0.00073 1.6E-08 49.8 5.0 58 103-172 15-77 (89)
128 TIGR00412 redox_disulf_2 small 97.2 0.0016 3.4E-08 46.5 6.3 54 104-171 3-60 (76)
129 PF13192 Thioredoxin_3: Thiore 97.1 0.0012 2.7E-08 46.9 5.3 54 25-92 2-59 (76)
130 KOG4023|consensus 97.1 0.0008 1.7E-08 50.2 4.2 74 25-98 3-82 (108)
131 PF13192 Thioredoxin_3: Thiore 97.1 0.0036 7.8E-08 44.5 7.4 49 117-172 9-63 (76)
132 cd02975 PfPDO_like_N Pyrococcu 97.1 0.001 2.3E-08 51.1 4.9 55 23-89 22-82 (113)
133 cd03061 GST_N_CLIC GST_N famil 97.0 0.0029 6.3E-08 47.0 6.5 68 23-93 3-72 (91)
134 cd03054 GST_N_Metaxin GST_N fa 96.9 0.0035 7.7E-08 43.7 6.4 59 114-182 12-70 (72)
135 KOG3029|consensus 96.9 0.0027 5.8E-08 56.1 6.4 82 103-195 90-177 (370)
136 cd01659 TRX_superfamily Thiore 96.8 0.0027 5.9E-08 40.9 4.9 56 26-90 1-61 (69)
137 cd03061 GST_N_CLIC GST_N famil 96.8 0.0059 1.3E-07 45.3 7.0 64 116-182 20-83 (91)
138 cd03052 GST_N_GDAP1 GST_N fami 96.8 0.0055 1.2E-07 43.2 6.6 69 104-180 1-71 (73)
139 cd03058 GST_N_Tau GST_N family 96.8 0.0076 1.7E-07 42.1 7.3 68 105-180 2-69 (74)
140 COG4545 Glutaredoxin-related p 96.8 0.0023 5E-08 45.4 4.4 68 104-178 4-82 (85)
141 cd03053 GST_N_Phi GST_N family 96.8 0.0071 1.5E-07 42.4 7.0 70 104-181 2-73 (76)
142 COG1393 ArsC Arsenate reductas 96.8 0.0016 3.5E-08 50.6 3.9 46 103-154 2-47 (117)
143 cd03058 GST_N_Tau GST_N family 96.8 0.0032 7E-08 44.1 5.2 57 26-90 1-57 (74)
144 cd02953 DsbDgamma DsbD gamma f 96.8 0.0035 7.6E-08 46.8 5.7 59 22-88 11-78 (104)
145 TIGR02187 GlrX_arch Glutaredox 96.7 0.0037 8E-08 53.4 6.3 57 23-91 134-195 (215)
146 PRK10026 arsenate reductase; P 96.7 0.0019 4E-08 51.9 4.0 48 102-155 2-49 (141)
147 cd03054 GST_N_Metaxin GST_N fa 96.7 0.0027 5.8E-08 44.3 4.1 52 34-95 10-61 (72)
148 cd03042 GST_N_Zeta GST_N famil 96.7 0.0073 1.6E-07 41.8 6.3 67 105-179 2-70 (73)
149 TIGR03140 AhpF alkyl hydropero 96.6 0.007 1.5E-07 58.4 8.1 60 101-172 118-182 (515)
150 cd03053 GST_N_Phi GST_N family 96.6 0.0047 1E-07 43.3 5.2 57 26-90 2-60 (76)
151 PRK15317 alkyl hydroperoxide r 96.6 0.0054 1.2E-07 59.2 7.3 60 101-172 117-181 (517)
152 TIGR00014 arsC arsenate reduct 96.6 0.0025 5.4E-08 49.2 4.0 46 104-155 1-46 (114)
153 cd03052 GST_N_GDAP1 GST_N fami 96.6 0.0038 8.3E-08 44.0 4.6 58 26-91 1-60 (73)
154 cd03076 GST_N_Pi GST_N family, 96.6 0.012 2.6E-07 41.2 7.2 68 104-180 2-69 (73)
155 cd02949 TRX_NTR TRX domain, no 96.6 0.0059 1.3E-07 45.1 5.8 55 22-88 13-73 (97)
156 cd02975 PfPDO_like_N Pyrococcu 96.6 0.0097 2.1E-07 45.6 7.1 50 105-166 27-81 (113)
157 cd03034 ArsC_ArsC Arsenate Red 96.6 0.0028 6E-08 48.7 4.0 45 104-154 1-45 (112)
158 PRK10853 putative reductase; P 96.5 0.003 6.4E-08 49.2 3.9 46 104-155 2-47 (118)
159 PF03960 ArsC: ArsC family; I 96.5 0.0039 8.5E-08 47.6 4.5 42 29-76 1-42 (110)
160 TIGR01616 nitro_assoc nitrogen 96.5 0.0033 7.2E-08 49.5 4.1 46 103-154 2-47 (126)
161 TIGR01295 PedC_BrcD bacterioci 96.4 0.012 2.6E-07 45.9 6.7 64 24-93 25-103 (122)
162 cd03039 GST_N_Sigma_like GST_N 96.4 0.013 2.8E-07 40.7 6.3 67 105-179 2-68 (72)
163 cd03039 GST_N_Sigma_like GST_N 96.4 0.0062 1.3E-07 42.4 4.3 58 27-92 2-59 (72)
164 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.4 0.0054 1.2E-07 42.6 4.0 50 202-251 1-62 (66)
165 cd03042 GST_N_Zeta GST_N famil 96.3 0.0067 1.5E-07 41.9 4.5 58 27-92 2-61 (73)
166 cd03048 GST_N_Ure2p_like GST_N 96.3 0.02 4.2E-07 40.7 7.0 68 104-180 2-74 (81)
167 cd03049 GST_N_3 GST_N family, 96.3 0.015 3.2E-07 40.5 6.0 66 105-179 2-70 (73)
168 TIGR02182 GRXB Glutaredoxin, G 96.3 0.017 3.8E-07 48.9 7.4 67 106-182 2-69 (209)
169 cd03048 GST_N_Ure2p_like GST_N 96.2 0.011 2.3E-07 42.1 5.1 55 26-89 2-58 (81)
170 cd02947 TRX_family TRX family; 96.2 0.015 3.3E-07 41.0 5.7 54 23-88 11-69 (93)
171 PRK10387 glutaredoxin 2; Provi 96.1 0.022 4.9E-07 47.7 7.4 70 104-183 1-71 (210)
172 cd03076 GST_N_Pi GST_N family, 96.1 0.015 3.2E-07 40.8 5.3 58 26-92 2-59 (73)
173 cd03049 GST_N_3 GST_N family, 96.1 0.011 2.3E-07 41.2 4.6 53 27-88 2-56 (73)
174 PRK09481 sspA stringent starva 96.1 0.015 3.3E-07 49.2 6.1 59 25-92 10-68 (211)
175 cd01659 TRX_superfamily Thiore 95.8 0.034 7.3E-07 35.5 5.5 56 104-168 1-61 (69)
176 PRK10877 protein disulfide iso 95.6 0.16 3.5E-06 44.0 10.8 33 22-60 107-142 (232)
177 PRK10387 glutaredoxin 2; Provi 95.6 0.023 4.9E-07 47.6 5.3 59 26-94 1-60 (210)
178 PHA02278 thioredoxin-like prot 95.6 0.035 7.5E-07 42.0 5.8 59 22-88 14-78 (103)
179 cd02954 DIM1 Dim1 family; Dim1 95.6 0.034 7.4E-07 43.0 5.6 58 24-93 16-81 (114)
180 TIGR02182 GRXB Glutaredoxin, G 95.5 0.022 4.9E-07 48.2 5.0 59 27-95 1-60 (209)
181 TIGR03140 AhpF alkyl hydropero 95.5 0.024 5.1E-07 54.7 5.8 59 23-93 118-181 (515)
182 cd03050 GST_N_Theta GST_N fami 95.5 0.029 6.2E-07 39.3 4.8 57 26-90 1-59 (76)
183 cd03038 GST_N_etherase_LigE GS 95.5 0.04 8.6E-07 39.5 5.5 66 114-182 12-80 (84)
184 cd03080 GST_N_Metaxin_like GST 95.5 0.03 6.5E-07 39.3 4.8 58 26-93 2-60 (75)
185 PF13409 GST_N_2: Glutathione 95.5 0.024 5.3E-07 39.4 4.1 63 118-182 2-68 (70)
186 cd03038 GST_N_etherase_LigE GS 95.4 0.021 4.6E-07 41.0 3.8 60 27-89 2-64 (84)
187 cd03044 GST_N_EF1Bgamma GST_N 95.4 0.031 6.8E-07 39.2 4.6 55 27-89 2-57 (75)
188 TIGR03143 AhpF_homolog putativ 95.4 0.027 5.9E-07 54.9 5.7 57 24-92 478-539 (555)
189 PF03960 ArsC: ArsC family; I 95.4 0.027 5.9E-07 42.9 4.4 38 117-154 5-42 (110)
190 PRK14300 chaperone protein Dna 95.3 0.013 2.9E-07 54.3 3.1 51 199-251 145-204 (372)
191 cd02953 DsbDgamma DsbD gamma f 95.3 0.05 1.1E-06 40.4 5.6 55 104-166 15-78 (104)
192 COG0484 DnaJ DnaJ-class molecu 95.3 0.014 3E-07 53.9 3.0 54 198-251 141-203 (371)
193 cd03023 DsbA_Com1_like DsbA fa 95.3 0.12 2.6E-06 40.5 8.1 60 122-181 86-150 (154)
194 cd03080 GST_N_Metaxin_like GST 95.2 0.081 1.8E-06 37.1 6.3 55 117-181 16-70 (75)
195 PRK15317 alkyl hydroperoxide r 95.2 0.032 7E-07 53.8 5.4 59 23-93 117-180 (517)
196 cd03020 DsbA_DsbC_DsbG DsbA fa 95.2 0.28 6E-06 41.1 10.5 35 22-62 77-113 (197)
197 cd02947 TRX_family TRX family; 95.1 0.073 1.6E-06 37.3 5.8 54 104-169 14-74 (93)
198 cd02985 TRX_CDSP32 TRX family, 95.1 0.073 1.6E-06 39.8 6.1 57 23-88 16-77 (103)
199 cd03050 GST_N_Theta GST_N fami 95.1 0.12 2.6E-06 36.1 6.8 68 105-180 2-71 (76)
200 TIGR00862 O-ClC intracellular 95.0 0.063 1.4E-06 46.8 6.3 67 25-94 2-70 (236)
201 cd03044 GST_N_EF1Bgamma GST_N 95.0 0.1 2.2E-06 36.5 6.3 67 106-180 3-71 (75)
202 cd03046 GST_N_GTT1_like GST_N 95.0 0.11 2.3E-06 36.1 6.4 61 119-181 9-71 (76)
203 cd03047 GST_N_2 GST_N family, 95.0 0.054 1.2E-06 37.6 4.8 57 27-91 2-60 (73)
204 PRK10767 chaperone protein Dna 95.0 0.02 4.4E-07 53.0 3.3 51 199-251 142-201 (371)
205 PF00085 Thioredoxin: Thioredo 94.9 0.12 2.5E-06 37.7 6.7 54 23-88 18-77 (103)
206 cd03043 GST_N_1 GST_N family, 94.9 0.13 2.7E-06 36.0 6.5 64 114-179 6-70 (73)
207 PRK15113 glutathione S-transfe 94.9 0.058 1.3E-06 45.7 5.7 62 24-92 4-68 (214)
208 cd03043 GST_N_1 GST_N family, 94.9 0.049 1.1E-06 38.2 4.3 56 34-91 4-60 (73)
209 cd02989 Phd_like_TxnDC9 Phosdu 94.8 0.096 2.1E-06 40.1 6.1 58 23-92 23-87 (113)
210 TIGR01295 PedC_BrcD bacterioci 94.7 0.14 3E-06 39.8 6.9 63 104-172 27-104 (122)
211 PF13098 Thioredoxin_2: Thiore 94.7 0.085 1.8E-06 39.5 5.5 60 22-89 5-89 (112)
212 TIGR00862 O-ClC intracellular 94.6 0.16 3.4E-06 44.3 7.7 64 116-182 17-80 (236)
213 cd03057 GST_N_Beta GST_N famil 94.6 0.16 3.4E-06 35.5 6.4 59 120-180 10-71 (77)
214 PHA02278 thioredoxin-like prot 94.6 0.12 2.6E-06 39.0 6.1 60 104-171 18-85 (103)
215 PRK09481 sspA stringent starva 94.6 0.13 2.9E-06 43.3 7.0 68 103-179 10-77 (211)
216 COG3118 Thioredoxin domain-con 94.5 0.071 1.5E-06 47.7 5.3 63 23-97 44-114 (304)
217 cd03047 GST_N_2 GST_N family, 94.5 0.21 4.6E-06 34.6 6.8 67 105-179 2-70 (73)
218 cd02949 TRX_NTR TRX domain, no 94.5 0.12 2.6E-06 38.0 5.8 56 104-171 17-80 (97)
219 PRK14285 chaperone protein Dna 94.5 0.035 7.5E-07 51.4 3.4 51 199-251 146-205 (365)
220 cd02956 ybbN ybbN protein fami 94.4 0.095 2.1E-06 38.1 5.0 53 24-88 14-72 (96)
221 PTZ00051 thioredoxin; Provisio 94.4 0.11 2.4E-06 37.9 5.3 53 24-88 20-77 (98)
222 cd02957 Phd_like Phosducin (Ph 94.3 0.11 2.3E-06 39.5 5.3 57 24-93 26-89 (113)
223 PRK14298 chaperone protein Dna 94.2 0.048 1E-06 50.8 3.6 53 199-251 141-204 (377)
224 TIGR01068 thioredoxin thioredo 94.1 0.13 2.9E-06 37.1 5.3 53 24-88 16-74 (101)
225 cd03057 GST_N_Beta GST_N famil 94.0 0.11 2.3E-06 36.5 4.5 54 27-89 2-57 (77)
226 cd02951 SoxW SoxW family; SoxW 94.0 0.11 2.3E-06 40.0 4.9 58 23-88 15-90 (125)
227 cd03003 PDI_a_ERdj5_N PDIa fam 94.0 0.15 3.4E-06 37.5 5.6 54 23-88 19-78 (101)
228 PRK14284 chaperone protein Dna 94.0 0.05 1.1E-06 50.9 3.4 51 199-251 158-217 (391)
229 cd02984 TRX_PICOT TRX domain, 93.9 0.16 3.4E-06 36.9 5.4 54 23-88 15-74 (97)
230 cd02996 PDI_a_ERp44 PDIa famil 93.9 0.17 3.7E-06 37.9 5.7 54 23-88 19-84 (108)
231 cd02994 PDI_a_TMX PDIa family, 93.8 0.18 4E-06 37.0 5.6 53 24-88 18-77 (101)
232 cd02963 TRX_DnaJ TRX domain, D 93.8 0.21 4.6E-06 37.8 6.1 54 23-88 25-85 (111)
233 PF00684 DnaJ_CXXCXGXG: DnaJ c 93.8 0.079 1.7E-06 36.7 3.3 39 197-244 13-66 (66)
234 cd03004 PDI_a_ERdj5_C PDIa fam 93.8 0.19 4E-06 37.2 5.6 53 24-88 21-79 (104)
235 PRK14282 chaperone protein Dna 93.8 0.062 1.3E-06 49.8 3.6 53 199-251 152-215 (369)
236 cd02961 PDI_a_family Protein D 93.7 0.17 3.7E-06 36.2 5.3 53 24-88 17-77 (101)
237 cd02959 ERp19 Endoplasmic reti 93.6 0.13 2.9E-06 39.6 4.7 58 22-88 19-82 (117)
238 PRK14287 chaperone protein Dna 93.6 0.062 1.4E-06 49.9 3.4 53 199-251 138-201 (371)
239 TIGR01126 pdi_dom protein disu 93.6 0.18 4E-06 36.6 5.3 55 22-88 13-75 (102)
240 PRK14294 chaperone protein Dna 93.6 0.061 1.3E-06 49.8 3.2 51 199-251 144-203 (366)
241 PRK14289 chaperone protein Dna 93.6 0.064 1.4E-06 50.0 3.3 53 199-251 154-217 (386)
242 PRK14301 chaperone protein Dna 93.5 0.057 1.2E-06 50.1 3.0 51 199-251 144-203 (373)
243 PRK14286 chaperone protein Dna 93.4 0.063 1.4E-06 49.9 3.0 51 199-251 150-209 (372)
244 PRK14288 chaperone protein Dna 93.3 0.077 1.7E-06 49.2 3.4 50 200-251 141-198 (369)
245 PRK14290 chaperone protein Dna 93.2 0.083 1.8E-06 48.9 3.4 53 199-251 149-211 (365)
246 cd03046 GST_N_GTT1_like GST_N 93.1 0.16 3.4E-06 35.2 4.1 56 27-91 2-59 (76)
247 PRK14293 chaperone protein Dna 93.1 0.083 1.8E-06 49.1 3.3 53 199-251 143-206 (374)
248 PRK13728 conjugal transfer pro 93.0 0.34 7.4E-06 40.5 6.6 36 24-65 71-110 (181)
249 cd03001 PDI_a_P5 PDIa family, 93.0 0.29 6.3E-06 35.8 5.6 52 25-88 21-78 (103)
250 cd02954 DIM1 Dim1 family; Dim1 93.0 0.33 7.1E-06 37.5 6.0 57 104-172 18-82 (114)
251 cd02989 Phd_like_TxnDC9 Phosdu 93.0 0.36 7.9E-06 36.8 6.2 57 104-172 26-89 (113)
252 KOG0406|consensus 93.0 0.27 5.9E-06 42.6 6.0 63 24-94 8-70 (231)
253 cd02962 TMX2 TMX2 family; comp 93.0 0.21 4.5E-06 40.5 5.1 63 25-93 50-121 (152)
254 PRK14283 chaperone protein Dna 92.9 0.094 2E-06 48.8 3.4 53 199-251 146-209 (378)
255 cd02999 PDI_a_ERp44_like PDIa 92.9 0.35 7.7E-06 36.0 6.0 54 23-88 19-78 (100)
256 PF06764 DUF1223: Protein of u 92.9 0.17 3.6E-06 43.1 4.6 66 26-97 2-86 (202)
257 PRK10996 thioredoxin 2; Provis 92.9 0.36 7.8E-06 38.2 6.3 54 23-88 53-112 (139)
258 PF07315 DUF1462: Protein of u 92.8 0.56 1.2E-05 34.5 6.6 51 130-180 35-88 (93)
259 cd02952 TRP14_like Human TRX-r 92.8 0.18 3.9E-06 39.2 4.3 57 24-88 23-96 (119)
260 PRK14279 chaperone protein Dna 92.7 0.091 2E-06 49.1 3.0 51 199-251 173-232 (392)
261 cd02948 TRX_NDPK TRX domain, T 92.7 0.34 7.3E-06 36.0 5.6 53 23-88 18-77 (102)
262 PRK14297 chaperone protein Dna 92.7 0.1 2.3E-06 48.5 3.4 53 199-251 148-211 (380)
263 PRK14295 chaperone protein Dna 92.7 0.088 1.9E-06 49.2 2.9 51 199-251 166-225 (389)
264 TIGR02349 DnaJ_bact chaperone 92.7 0.11 2.3E-06 47.9 3.4 53 199-251 143-206 (354)
265 PRK14280 chaperone protein Dna 92.7 0.11 2.3E-06 48.4 3.4 53 199-251 143-206 (376)
266 PRK09381 trxA thioredoxin; Pro 92.7 0.41 9E-06 35.7 6.1 55 22-88 21-81 (109)
267 KOG0910|consensus 92.6 0.21 4.5E-06 40.4 4.5 60 22-93 61-128 (150)
268 PF13719 zinc_ribbon_5: zinc-r 92.6 0.093 2E-06 32.2 1.9 32 210-242 2-33 (37)
269 PRK14291 chaperone protein Dna 92.5 0.1 2.2E-06 48.6 3.1 51 199-251 156-214 (382)
270 PRK14278 chaperone protein Dna 92.5 0.13 2.7E-06 48.0 3.6 53 199-251 139-202 (378)
271 PRK14296 chaperone protein Dna 92.4 0.12 2.5E-06 48.1 3.3 53 199-251 149-212 (372)
272 cd03065 PDI_b_Calsequestrin_N 92.4 0.39 8.5E-06 37.4 5.7 55 23-88 27-93 (120)
273 PRK14276 chaperone protein Dna 92.4 0.12 2.7E-06 48.0 3.4 53 199-251 146-209 (380)
274 cd02998 PDI_a_ERp38 PDIa famil 92.3 0.37 8.1E-06 35.1 5.4 53 24-88 20-81 (105)
275 PRK14296 chaperone protein Dna 92.2 0.14 3E-06 47.6 3.4 38 199-246 166-218 (372)
276 cd02957 Phd_like Phosducin (Ph 92.2 0.48 1E-05 35.9 5.9 57 104-173 28-91 (113)
277 PF13409 GST_N_2: Glutathione 92.1 0.11 2.3E-06 36.1 2.0 50 40-91 2-55 (70)
278 cd03005 PDI_a_ERp46 PDIa famil 92.0 0.31 6.7E-06 35.5 4.6 53 24-88 18-79 (102)
279 cd02993 PDI_a_APS_reductase PD 92.0 0.48 1E-05 35.6 5.7 57 22-88 21-84 (109)
280 PRK14292 chaperone protein Dna 92.0 0.15 3.2E-06 47.3 3.4 53 199-251 139-203 (371)
281 PRK14285 chaperone protein Dna 91.9 0.16 3.5E-06 47.0 3.5 39 199-247 163-212 (365)
282 KOG0406|consensus 91.9 0.63 1.4E-05 40.4 6.9 74 102-183 8-81 (231)
283 PLN02817 glutathione dehydroge 91.8 0.59 1.3E-05 41.3 6.8 62 117-181 72-133 (265)
284 PRK14282 chaperone protein Dna 91.7 0.19 4.2E-06 46.5 3.9 39 199-247 169-222 (369)
285 PRK14284 chaperone protein Dna 91.7 0.17 3.6E-06 47.4 3.4 39 198-246 174-223 (391)
286 PRK14279 chaperone protein Dna 91.6 0.17 3.7E-06 47.3 3.5 39 199-247 190-239 (392)
287 cd03002 PDI_a_MPD1_like PDI fa 91.6 0.46 1E-05 35.2 5.2 55 24-88 20-80 (109)
288 cd02987 Phd_like_Phd Phosducin 91.6 0.39 8.4E-06 39.8 5.2 57 24-93 85-148 (175)
289 KOG2813|consensus 91.6 0.17 3.6E-06 45.7 3.1 22 199-220 187-208 (406)
290 PRK14280 chaperone protein Dna 91.6 0.19 4.1E-06 46.8 3.6 38 199-246 160-212 (376)
291 cd02950 TxlA TRX-like protein 91.6 0.42 9.2E-06 38.0 5.2 56 23-88 21-82 (142)
292 PRK14277 chaperone protein Dna 91.5 0.17 3.7E-06 47.2 3.3 53 199-251 155-218 (386)
293 PRK14276 chaperone protein Dna 91.4 0.19 4.1E-06 46.8 3.5 38 199-246 163-215 (380)
294 PRK15113 glutathione S-transfe 91.4 0.76 1.6E-05 38.8 7.0 71 103-179 5-77 (214)
295 PLN02378 glutathione S-transfe 91.4 0.78 1.7E-05 38.8 7.0 63 116-181 18-80 (213)
296 PRK14300 chaperone protein Dna 91.3 0.2 4.3E-06 46.5 3.5 38 199-246 162-210 (372)
297 PF01323 DSBA: DSBA-like thior 91.3 0.46 9.9E-06 39.0 5.4 61 121-181 123-189 (193)
298 cd02997 PDI_a_PDIR PDIa family 91.2 0.19 4E-06 36.8 2.6 56 23-88 18-81 (104)
299 PRK14298 chaperone protein Dna 91.1 0.22 4.8E-06 46.3 3.6 38 199-246 158-210 (377)
300 cd02955 SSP411 TRX domain, SSP 91.1 1 2.3E-05 35.1 6.9 58 23-88 16-86 (124)
301 PTZ00037 DnaJ_C chaperone prot 91.1 0.19 4.1E-06 47.5 3.2 53 199-251 150-214 (421)
302 PRK14281 chaperone protein Dna 91.1 0.2 4.4E-06 46.9 3.4 53 199-251 163-225 (397)
303 KOG0712|consensus 91.1 0.26 5.5E-06 45.1 3.8 53 199-251 127-192 (337)
304 PRK14278 chaperone protein Dna 91.0 0.22 4.7E-06 46.4 3.5 38 199-246 156-208 (378)
305 PRK14286 chaperone protein Dna 91.0 0.23 5E-06 46.1 3.6 39 199-247 167-216 (372)
306 cd02986 DLP Dim1 family, Dim1- 91.0 0.24 5.2E-06 38.3 3.1 58 24-93 16-81 (114)
307 cd02965 HyaE HyaE family; HyaE 91.0 0.77 1.7E-05 35.3 5.9 63 21-93 26-96 (111)
308 PRK14301 chaperone protein Dna 91.0 0.23 4.9E-06 46.2 3.5 38 199-246 161-209 (373)
309 TIGR01262 maiA maleylacetoacet 90.9 0.63 1.4E-05 38.8 5.9 62 117-180 7-71 (210)
310 cd02985 TRX_CDSP32 TRX family, 90.9 1.2 2.6E-05 33.1 6.8 59 104-171 19-84 (103)
311 cd03006 PDI_a_EFP1_N PDIa fami 90.9 0.58 1.3E-05 35.9 5.2 56 22-88 29-90 (113)
312 PLN02473 glutathione S-transfe 90.8 0.46 9.9E-06 39.9 5.0 61 25-93 2-64 (214)
313 KOG0907|consensus 90.7 0.46 1E-05 36.1 4.4 50 26-87 25-79 (106)
314 PRK14277 chaperone protein Dna 90.7 0.27 6E-06 45.8 3.8 38 199-246 172-224 (386)
315 cd03000 PDI_a_TMX3 PDIa family 90.6 0.53 1.2E-05 34.9 4.7 54 23-88 16-78 (104)
316 PRK14289 chaperone protein Dna 90.6 0.26 5.7E-06 45.9 3.6 39 198-246 170-223 (386)
317 PRK10767 chaperone protein Dna 90.5 0.29 6.3E-06 45.4 3.8 38 199-246 159-207 (371)
318 PTZ00051 thioredoxin; Provisio 90.4 0.71 1.5E-05 33.5 5.2 56 104-171 22-84 (98)
319 TIGR01068 thioredoxin thioredo 90.4 1.2 2.5E-05 32.0 6.3 55 104-170 18-80 (101)
320 PRK14297 chaperone protein Dna 90.4 0.28 6.2E-06 45.6 3.6 38 199-246 165-217 (380)
321 PLN02817 glutathione dehydroge 90.4 0.42 9.2E-06 42.3 4.6 52 39-93 72-123 (265)
322 PF14595 Thioredoxin_9: Thiore 90.4 0.11 2.3E-06 41.0 0.7 58 24-90 43-105 (129)
323 cd03077 GST_N_Alpha GST_N fami 90.3 0.79 1.7E-05 32.4 5.2 59 26-91 2-60 (79)
324 PLN02378 glutathione S-transfe 90.3 0.45 9.8E-06 40.2 4.5 53 38-93 18-70 (213)
325 cd03079 GST_N_Metaxin2 GST_N f 90.2 0.88 1.9E-05 32.3 5.2 56 117-181 16-71 (74)
326 cd03077 GST_N_Alpha GST_N fami 90.2 2 4.2E-05 30.4 7.1 70 104-180 2-71 (79)
327 cd03019 DsbA_DsbA DsbA family, 90.1 0.59 1.3E-05 37.7 5.0 52 122-173 100-156 (178)
328 PRK14295 chaperone protein Dna 90.1 0.29 6.4E-06 45.7 3.5 38 199-246 183-231 (389)
329 PRK14294 chaperone protein Dna 90.0 0.32 7E-06 45.0 3.6 38 199-246 161-209 (366)
330 PTZ00037 DnaJ_C chaperone prot 89.7 0.34 7.3E-06 45.8 3.6 41 199-247 166-221 (421)
331 TIGR02738 TrbB type-F conjugat 89.7 1.5 3.2E-05 35.6 6.9 38 21-64 49-90 (153)
332 PRK13972 GSH-dependent disulfi 89.6 0.57 1.2E-05 39.5 4.6 54 26-88 2-57 (215)
333 PLN02473 glutathione S-transfe 89.5 1.3 2.7E-05 37.2 6.7 69 104-180 3-73 (214)
334 TIGR01262 maiA maleylacetoacet 89.5 0.35 7.6E-06 40.3 3.2 58 28-93 2-62 (210)
335 TIGR02642 phage_xxxx uncharact 89.5 0.25 5.4E-06 41.5 2.2 24 199-222 99-127 (186)
336 cd02992 PDI_a_QSOX PDIa family 89.4 0.67 1.5E-05 35.3 4.5 56 23-88 20-84 (114)
337 PRK14288 chaperone protein Dna 89.3 0.29 6.3E-06 45.4 2.8 39 198-246 155-204 (369)
338 TIGR02349 DnaJ_bact chaperone 89.1 0.44 9.6E-06 43.8 3.8 39 199-247 160-213 (354)
339 PRK09381 trxA thioredoxin; Pro 89.0 1.2 2.6E-05 33.1 5.5 56 104-171 25-88 (109)
340 COG0484 DnaJ DnaJ-class molecu 88.8 0.49 1.1E-05 43.8 3.8 40 198-247 158-210 (371)
341 cd02984 TRX_PICOT TRX domain, 88.6 1.3 2.8E-05 31.9 5.4 56 104-171 18-81 (97)
342 PRK14290 chaperone protein Dna 88.5 0.35 7.7E-06 44.7 2.8 38 199-246 165-217 (365)
343 PRK14287 chaperone protein Dna 88.4 0.45 9.9E-06 44.2 3.4 38 199-246 155-207 (371)
344 PRK14281 chaperone protein Dna 88.4 0.36 7.8E-06 45.2 2.7 38 199-246 179-231 (397)
345 PF00085 Thioredoxin: Thioredo 88.2 0.85 1.8E-05 33.0 4.2 56 104-171 21-84 (103)
346 PRK11752 putative S-transferas 88.1 1.3 2.7E-05 39.0 5.9 59 23-90 42-108 (264)
347 cd02951 SoxW SoxW family; SoxW 88.0 0.93 2E-05 34.7 4.5 57 104-168 18-93 (125)
348 PTZ00443 Thioredoxin domain-co 87.9 1.5 3.2E-05 37.9 6.0 54 23-88 53-112 (224)
349 cd02962 TMX2 TMX2 family; comp 87.8 1.4 3E-05 35.7 5.5 63 104-172 51-122 (152)
350 cd02996 PDI_a_ERp44 PDIa famil 87.7 1.6 3.5E-05 32.4 5.5 54 104-169 22-89 (108)
351 PRK10996 thioredoxin 2; Provis 87.6 2.6 5.7E-05 33.2 6.9 56 104-171 56-119 (139)
352 cd02956 ybbN ybbN protein fami 87.4 1.4 3.1E-05 31.7 5.0 56 104-171 16-79 (96)
353 PRK14293 chaperone protein Dna 87.4 0.61 1.3E-05 43.3 3.6 38 199-246 160-212 (374)
354 cd02994 PDI_a_TMX PDIa family, 87.3 1.8 3.8E-05 31.6 5.4 51 104-166 20-77 (101)
355 PF13098 Thioredoxin_2: Thiore 87.2 1.7 3.8E-05 32.2 5.5 60 102-169 7-94 (112)
356 PF14205 Cys_rich_KTR: Cystein 87.2 0.62 1.4E-05 31.0 2.5 39 208-246 2-40 (55)
357 PRK14283 chaperone protein Dna 87.1 0.65 1.4E-05 43.2 3.6 38 199-246 163-215 (378)
358 PF13717 zinc_ribbon_4: zinc-r 87.1 0.46 1E-05 28.9 1.8 31 211-242 3-33 (36)
359 PF02798 GST_N: Glutathione S- 87.1 1.7 3.8E-05 30.4 5.1 59 25-93 2-64 (76)
360 cd02965 HyaE HyaE family; HyaE 87.1 2 4.3E-05 33.0 5.7 62 101-172 28-97 (111)
361 COG3019 Predicted metal-bindin 87.0 4.9 0.00011 32.2 7.9 75 101-185 25-104 (149)
362 COG0625 Gst Glutathione S-tran 87.0 0.98 2.1E-05 37.8 4.4 57 27-91 2-59 (211)
363 cd02959 ERp19 Endoplasmic reti 86.9 0.93 2E-05 34.8 3.8 55 104-167 23-84 (117)
364 COG0178 UvrA Excinuclease ATPa 86.7 0.76 1.6E-05 46.6 4.0 53 169-222 696-765 (935)
365 cd02948 TRX_NDPK TRX domain, T 86.5 3.9 8.4E-05 30.2 7.0 54 104-170 21-83 (102)
366 cd02961 PDI_a_family Protein D 86.3 2.3 5E-05 30.1 5.6 51 103-165 18-76 (101)
367 PRK14291 chaperone protein Dna 86.3 0.78 1.7E-05 42.8 3.7 37 199-246 173-220 (382)
368 PF11331 DUF3133: Protein of u 86.2 0.4 8.8E-06 30.9 1.2 38 206-243 2-40 (46)
369 PF06953 ArsD: Arsenical resis 86.0 3.8 8.2E-05 32.1 6.8 54 123-179 31-93 (123)
370 KOG1422|consensus 85.8 2.1 4.5E-05 36.6 5.6 67 25-96 3-74 (221)
371 PLN00410 U5 snRNP protein, DIM 85.6 1.1 2.4E-05 35.9 3.8 43 24-72 25-73 (142)
372 cd02982 PDI_b'_family Protein 85.6 2.1 4.5E-05 31.2 5.1 57 23-89 13-75 (103)
373 TIGR02740 TraF-like TraF-like 85.5 1.9 4.1E-05 38.3 5.5 58 23-88 167-235 (271)
374 COG2999 GrxB Glutaredoxin 2 [P 85.4 0.83 1.8E-05 38.1 3.0 56 28-93 3-59 (215)
375 PF10865 DUF2703: Domain of un 85.2 4.7 0.0001 31.4 7.0 50 115-171 12-72 (120)
376 PLN02395 glutathione S-transfe 85.2 3.2 7E-05 34.6 6.7 70 104-182 3-74 (215)
377 PRK14292 chaperone protein Dna 85.1 0.75 1.6E-05 42.7 2.9 38 199-246 157-209 (371)
378 cd02964 TryX_like_family Trypa 84.9 3.6 7.8E-05 31.8 6.4 37 25-67 20-65 (132)
379 PF13901 DUF4206: Domain of un 84.8 0.2 4.4E-06 42.5 -0.9 76 161-242 103-180 (202)
380 PF14354 Lar_restr_allev: Rest 84.8 0.78 1.7E-05 30.9 2.2 32 210-242 3-37 (61)
381 cd03075 GST_N_Mu GST_N family, 84.8 5.9 0.00013 28.1 7.0 62 118-180 9-77 (82)
382 PRK00293 dipZ thiol:disulfide 84.7 2.3 4.9E-05 41.9 6.2 57 24-88 476-540 (571)
383 PLN03165 chaperone protein dna 84.7 0.63 1.4E-05 35.8 1.9 24 199-222 75-98 (111)
384 cd02995 PDI_a_PDI_a'_C PDIa fa 84.7 0.91 2E-05 33.0 2.7 53 23-88 19-79 (104)
385 TIGR01126 pdi_dom protein disu 84.6 1.7 3.7E-05 31.3 4.2 51 103-165 16-74 (102)
386 cd03009 TryX_like_TryX_NRX Try 84.5 3.6 7.8E-05 31.6 6.2 22 24-51 20-41 (131)
387 PF07315 DUF1462: Protein of u 84.4 3.2 7E-05 30.6 5.3 64 27-95 1-80 (93)
388 PLN02395 glutathione S-transfe 84.2 2 4.3E-05 35.9 5.0 59 25-92 2-62 (215)
389 cd03004 PDI_a_ERdj5_C PDIa fam 84.0 2.5 5.5E-05 30.9 4.9 53 104-168 23-83 (104)
390 cd03008 TryX_like_RdCVF Trypar 83.9 3 6.6E-05 33.5 5.6 47 24-76 27-87 (146)
391 cd03001 PDI_a_P5 PDIa family, 83.7 2.7 5.8E-05 30.5 4.9 50 104-165 22-77 (103)
392 PF11009 DUF2847: Protein of u 83.4 5.5 0.00012 30.3 6.5 60 23-88 19-84 (105)
393 TIGR02642 phage_xxxx uncharact 83.4 0.8 1.7E-05 38.4 2.1 31 209-247 98-128 (186)
394 PRK10357 putative glutathione 83.2 1.7 3.6E-05 36.0 4.0 56 27-91 2-58 (202)
395 cd02963 TRX_DnaJ TRX domain, D 83.0 3.2 6.9E-05 31.2 5.2 56 104-171 28-92 (111)
396 cd03078 GST_N_Metaxin1_like GS 82.9 2.3 5E-05 29.8 4.1 54 34-97 10-63 (73)
397 PLN00410 U5 snRNP protein, DIM 82.9 3.9 8.5E-05 32.8 5.9 41 104-150 27-73 (142)
398 cd02987 Phd_like_Phd Phosducin 82.9 3 6.5E-05 34.5 5.4 56 104-172 87-149 (175)
399 cd02998 PDI_a_ERp38 PDIa famil 82.8 2.4 5.1E-05 30.7 4.3 51 104-166 22-81 (105)
400 PTZ00057 glutathione s-transfe 82.8 9.1 0.0002 31.9 8.4 71 103-179 4-77 (205)
401 PRK13972 GSH-dependent disulfi 82.8 5.2 0.00011 33.5 7.0 67 104-179 2-77 (215)
402 KOG0910|consensus 82.4 0.67 1.5E-05 37.5 1.2 56 104-171 65-128 (150)
403 cd03002 PDI_a_MPD1_like PDI fa 82.4 2.6 5.6E-05 31.0 4.4 54 103-166 21-80 (109)
404 cd03005 PDI_a_ERp46 PDIa famil 82.4 3 6.5E-05 30.1 4.7 54 104-169 20-84 (102)
405 COG0625 Gst Glutathione S-tran 82.3 4 8.7E-05 34.1 6.1 68 105-180 2-71 (211)
406 PRK14873 primosome assembly pr 82.2 2.2 4.7E-05 42.8 5.0 46 198-251 382-428 (665)
407 PF13899 Thioredoxin_7: Thiore 81.9 3.2 7E-05 29.3 4.6 24 22-51 17-40 (82)
408 PRK11657 dsbG disulfide isomer 81.7 6.9 0.00015 34.3 7.5 34 22-61 117-154 (251)
409 KOG1422|consensus 81.7 4.4 9.6E-05 34.6 5.9 62 117-183 20-83 (221)
410 COG5494 Predicted thioredoxin/ 81.5 3.5 7.5E-05 35.3 5.2 57 25-93 12-70 (265)
411 cd02988 Phd_like_VIAF Phosduci 81.4 2.6 5.6E-05 35.5 4.5 53 25-92 105-164 (192)
412 cd03003 PDI_a_ERdj5_N PDIa fam 81.4 2.5 5.4E-05 30.9 4.0 54 104-169 22-83 (101)
413 cd02972 DsbA_family DsbA famil 81.3 3.4 7.4E-05 29.0 4.6 31 26-62 1-37 (98)
414 PRK15412 thiol:disulfide inter 81.1 6.9 0.00015 32.3 7.0 47 24-76 70-119 (185)
415 cd02950 TxlA TRX-like protein 80.8 3.4 7.4E-05 32.8 4.8 58 104-171 24-90 (142)
416 PTZ00057 glutathione s-transfe 80.6 5.9 0.00013 33.0 6.5 63 25-93 4-69 (205)
417 cd03010 TlpA_like_DsbE TlpA-li 80.1 8.5 0.00019 29.2 6.8 47 24-76 27-77 (127)
418 cd02972 DsbA_family DsbA famil 80.0 5.1 0.00011 28.0 5.2 31 104-140 1-37 (98)
419 PF13728 TraF: F plasmid trans 79.6 5.8 0.00013 33.9 6.2 60 22-89 120-190 (215)
420 TIGR00595 priA primosomal prot 79.6 2.9 6.3E-05 40.4 4.8 46 198-251 212-259 (505)
421 TIGR00424 APS_reduc 5'-adenyly 79.4 4.4 9.4E-05 38.9 5.8 56 23-88 372-434 (463)
422 PF06953 ArsD: Arsenical resis 79.3 1.5 3.2E-05 34.4 2.2 71 23-93 1-83 (123)
423 PF02798 GST_N: Glutathione S- 79.3 15 0.00033 25.5 7.3 58 120-179 11-72 (76)
424 cd02993 PDI_a_APS_reductase PD 78.9 3.5 7.7E-05 30.8 4.2 52 104-165 25-83 (109)
425 PRK10357 putative glutathione 78.8 5.7 0.00012 32.8 5.8 66 105-179 2-68 (202)
426 PF13905 Thioredoxin_8: Thiore 78.7 4.1 9E-05 29.2 4.4 22 25-52 4-25 (95)
427 PF11287 DUF3088: Protein of u 78.4 5.4 0.00012 30.6 4.9 53 37-92 21-78 (112)
428 cd03078 GST_N_Metaxin1_like GS 78.2 9.4 0.0002 26.6 5.9 56 117-182 15-70 (73)
429 COG4837 Uncharacterized protei 78.1 6.9 0.00015 29.1 5.2 48 132-179 44-94 (106)
430 cd02999 PDI_a_ERp44_like PDIa 78.1 6.8 0.00015 28.9 5.4 50 104-165 22-77 (100)
431 cd02952 TRP14_like Human TRX-r 77.7 5.8 0.00013 30.8 5.1 47 118-166 40-96 (119)
432 TIGR02098 MJ0042_CXXC MJ0042 f 77.6 1.9 4.1E-05 26.1 1.9 32 211-243 3-34 (38)
433 KOG2813|consensus 77.0 1.8 3.9E-05 39.2 2.3 51 199-251 198-262 (406)
434 cd02986 DLP Dim1 family, Dim1- 76.8 3.4 7.3E-05 31.9 3.5 56 104-171 18-81 (114)
435 PF11009 DUF2847: Protein of u 76.8 12 0.00025 28.5 6.4 65 101-171 19-91 (105)
436 PTZ00443 Thioredoxin domain-co 76.7 9.4 0.0002 33.0 6.6 56 104-171 56-119 (224)
437 cd03022 DsbA_HCCA_Iso DsbA fam 76.5 4 8.6E-05 33.3 4.2 60 122-181 124-188 (192)
438 COG4837 Uncharacterized protei 76.4 10 0.00022 28.2 5.7 68 23-95 4-87 (106)
439 PF14595 Thioredoxin_9: Thiore 75.9 1 2.2E-05 35.5 0.3 56 102-166 43-103 (129)
440 PRK05580 primosome assembly pr 75.9 3.7 8.1E-05 41.2 4.5 46 198-251 380-427 (679)
441 TIGR00630 uvra excinuclease AB 75.8 2.4 5.3E-05 44.0 3.2 62 161-222 682-771 (924)
442 cd03065 PDI_b_Calsequestrin_N 75.7 12 0.00025 29.1 6.3 42 124-171 57-100 (120)
443 COG5429 Uncharacterized secret 75.6 4.9 0.00011 35.0 4.5 68 23-96 42-128 (261)
444 PRK10542 glutathionine S-trans 75.5 7.9 0.00017 31.8 5.8 59 120-180 10-72 (201)
445 TIGR03655 anti_R_Lar restricti 75.4 2.9 6.2E-05 27.5 2.4 34 210-244 1-36 (53)
446 cd02997 PDI_a_PDIR PDIa family 75.1 2.3 4.9E-05 30.9 2.1 52 104-165 21-80 (104)
447 PLN02309 5'-adenylylsulfate re 75.0 6 0.00013 37.9 5.4 56 22-88 365-428 (457)
448 PRK10542 glutathionine S-trans 74.7 4.1 8.9E-05 33.5 3.8 54 27-89 2-58 (201)
449 PF09297 zf-NADH-PPase: NADH p 74.6 2.2 4.7E-05 25.0 1.5 25 212-242 5-29 (32)
450 PTZ00102 disulphide isomerase; 74.0 6.3 0.00014 37.2 5.4 54 22-87 49-111 (477)
451 cd02967 mauD Methylamine utili 73.6 16 0.00034 26.9 6.5 24 23-52 22-45 (114)
452 KOG4244|consensus 73.6 4.3 9.4E-05 35.9 3.7 52 118-179 61-112 (281)
453 cd02992 PDI_a_QSOX PDIa family 73.5 6.5 0.00014 29.8 4.4 53 104-166 23-84 (114)
454 cd03006 PDI_a_EFP1_N PDIa fami 73.5 8.4 0.00018 29.4 5.0 56 103-169 32-95 (113)
455 TIGR02661 MauD methylamine deh 73.4 16 0.00035 30.3 7.1 45 24-75 76-124 (189)
456 KOG0867|consensus 73.4 3.7 8.1E-05 35.2 3.3 73 25-110 2-76 (226)
457 cd02966 TlpA_like_family TlpA- 73.3 13 0.00028 26.5 5.9 48 23-76 20-75 (116)
458 TIGR00385 dsbE periplasmic pro 73.3 13 0.00029 30.1 6.5 38 24-67 65-105 (173)
459 PRK13728 conjugal transfer pro 73.2 10 0.00023 31.6 5.8 57 104-166 73-142 (181)
460 PHA03075 glutaredoxin-like pro 72.6 5 0.00011 31.1 3.4 33 24-62 3-35 (123)
461 cd03009 TryX_like_TryX_NRX Try 72.5 13 0.00029 28.3 6.0 20 104-129 22-41 (131)
462 cd02955 SSP411 TRX domain, SSP 72.5 7.9 0.00017 30.2 4.7 58 106-171 21-94 (124)
463 PF13728 TraF: F plasmid trans 72.2 9.9 0.00021 32.5 5.6 57 102-166 122-189 (215)
464 TIGR01130 ER_PDI_fam protein d 71.4 8.2 0.00018 35.9 5.4 52 24-87 20-80 (462)
465 PF15616 TerY-C: TerY-C metal 70.7 4.1 8.9E-05 32.3 2.7 39 200-246 78-117 (131)
466 KOG0907|consensus 70.7 7.5 0.00016 29.4 4.1 54 104-169 25-85 (106)
467 PF06110 DUF953: Eukaryotic pr 70.6 5.8 0.00013 30.8 3.5 51 35-87 33-94 (119)
468 cd03075 GST_N_Mu GST_N family, 69.1 15 0.00032 26.0 5.2 51 41-91 10-66 (82)
469 cd03011 TlpA_like_ScsD_MtbDsbE 68.9 6.7 0.00015 29.4 3.6 25 23-53 21-45 (123)
470 KOG4244|consensus 68.8 5 0.00011 35.5 3.0 67 22-98 42-109 (281)
471 cd03000 PDI_a_TMX3 PDIa family 68.2 2.8 6.1E-05 30.9 1.3 53 104-168 19-81 (104)
472 cd02995 PDI_a_PDI_a'_C PDIa fa 68.1 11 0.00023 27.1 4.4 51 103-166 21-79 (104)
473 KOG1695|consensus 67.7 16 0.00035 31.1 5.9 59 118-179 12-70 (206)
474 COG3634 AhpF Alkyl hydroperoxi 66.8 11 0.00024 35.1 4.9 54 117-173 127-182 (520)
475 TIGR02740 TraF-like TraF-like 66.8 14 0.0003 32.8 5.6 56 103-166 169-235 (271)
476 COG3019 Predicted metal-bindin 66.8 9.4 0.0002 30.6 3.9 68 22-99 24-93 (149)
477 cd02964 TryX_like_family Trypa 66.4 27 0.00057 26.8 6.6 19 105-129 22-40 (132)
478 COG2143 Thioredoxin-related pr 66.3 10 0.00022 31.1 4.1 57 25-89 45-122 (182)
479 cd03079 GST_N_Metaxin2 GST_N f 66.2 6 0.00013 28.0 2.5 47 40-95 17-63 (74)
480 cd00079 HELICc Helicase superf 66.1 39 0.00084 25.0 7.4 78 23-110 28-106 (131)
481 PRK11752 putative S-transferas 65.7 24 0.00053 30.8 6.9 71 100-179 41-123 (264)
482 KOG0335|consensus 65.5 53 0.0012 31.7 9.4 129 24-192 338-469 (482)
483 COG5494 Predicted thioredoxin/ 65.3 8.5 0.00019 33.0 3.7 68 103-182 12-85 (265)
484 PHA00626 hypothetical protein 64.5 6 0.00013 26.5 2.1 18 201-218 2-19 (59)
485 smart00834 CxxC_CXXC_SSSS Puta 64.2 4.6 9.9E-05 24.5 1.5 28 212-242 7-34 (41)
486 PF13462 Thioredoxin_4: Thiore 62.8 12 0.00025 29.4 4.0 40 22-67 12-59 (162)
487 PRK00293 dipZ thiol:disulfide 62.5 18 0.0004 35.5 6.0 53 105-165 479-539 (571)
488 COG1107 Archaea-specific RecJ- 62.5 5.4 0.00012 39.1 2.2 47 199-245 53-106 (715)
489 PRK02935 hypothetical protein; 62.1 5.2 0.00011 30.4 1.6 25 211-243 71-95 (110)
490 PRK00635 excinuclease ABC subu 62.0 7.5 0.00016 43.2 3.5 52 170-222 1574-1642(1809)
491 PF08792 A2L_zn_ribbon: A2L zi 62.0 5.1 0.00011 23.9 1.3 25 211-241 4-28 (33)
492 smart00440 ZnF_C2C2 C2C2 Zinc 61.9 8.5 0.00018 23.8 2.3 31 212-242 2-36 (40)
493 PF01096 TFIIS_C: Transcriptio 61.7 6.6 0.00014 24.2 1.8 32 211-242 1-36 (39)
494 PRK14714 DNA polymerase II lar 61.1 7 0.00015 41.6 2.9 23 199-221 667-690 (1337)
495 KOG2324|consensus 61.0 6.2 0.00013 36.6 2.2 37 206-247 223-260 (457)
496 cd02988 Phd_like_VIAF Phosduci 61.0 16 0.00034 30.7 4.6 54 104-172 106-166 (192)
497 PF05180 zf-DNL: DNL zinc fing 60.8 2.6 5.7E-05 29.3 -0.1 35 212-246 6-41 (66)
498 COG2260 Predicted Zn-ribbon RN 60.6 6.1 0.00013 26.7 1.6 32 200-231 6-38 (59)
499 PTZ00102 disulphide isomerase; 59.9 14 0.00031 34.8 4.7 55 22-88 375-437 (477)
500 PF08534 Redoxin: Redoxin; In 59.5 29 0.00064 26.8 5.7 45 23-73 29-81 (146)
No 1
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=3.6e-51 Score=329.53 Aligned_cols=145 Identities=41% Similarity=0.805 Sum_probs=136.7
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCC--CCCCCceEEECCeeeCChHHHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~--~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
+|+||||||++||+|||+|.++|++|++++|+|+++||++|+++++||+++++. .+.++|||||+|+||||+|+|++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999872 358999999999999999999999
Q ss_pred HHcCChhhhhccCCCCCCCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCccccccc
Q psy15946 181 NESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKC 248 (251)
Q Consensus 181 ~e~G~L~~~L~~~~~~~~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~C 248 (251)
|++|+|+++|++++...+...|++|||.|||||+.||||+|++.++.+ .++.++||++|||||||||
T Consensus 81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~-~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENAT-AAGGFLRCPECNENGLVRC 147 (147)
T ss_pred HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCc-ccccEEECCCCCccccccC
Confidence 999999999999988888889999999999999999999999877654 4577999999999999999
No 2
>KOG2824|consensus
Probab=100.00 E-value=2.8e-49 Score=339.84 Aligned_cols=149 Identities=39% Similarity=0.769 Sum_probs=139.7
Q ss_pred cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCC--CCCCCceEEECCeeeCChHHH
Q psy15946 100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGDADAI 177 (251)
Q Consensus 100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~--~~~~vP~vfi~g~~iGG~d~l 177 (251)
..++||||+||||+||+|+++|..|++||++++|.|+|+||+||.++++||++++|. ...++|+|||+|+||||+++|
T Consensus 129 ge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV 208 (281)
T KOG2824|consen 129 GEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEV 208 (281)
T ss_pred CCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHh
Confidence 355899999999999999999999999999999999999999999999999999984 478999999999999999999
Q ss_pred HHHHHcCChhhhhccCCCCCCCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCcccccccCCC
Q psy15946 178 ERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251 (251)
Q Consensus 178 ~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~C~~C 251 (251)
.+|||.|+|.++|++++ ......|.+|||.||+||+.||||+|++.. +.+++.++||++||||||||||.|
T Consensus 209 ~~LnE~GkL~~lL~~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~--~~~~~~~~rC~~CNENGLvrCp~C 279 (281)
T KOG2824|consen 209 VRLNEEGKLGKLLKGIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEE--EEDDGGVLRCLECNENGLVRCPVC 279 (281)
T ss_pred hhhhhcchHHHHHhcCC-CCCCCcCCCcCCcceEecCCCCCceeeeee--ccCCCcEEECcccCCCCceeCCcc
Confidence 99999999999999999 556689999999999999999999999643 456788999999999999999999
No 3
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.90 E-value=1e-23 Score=157.26 Aligned_cols=88 Identities=25% Similarity=0.321 Sum_probs=84.3
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCC--CCCCCceEEECCeeeCChHHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~--~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
|+||+||++++|++..+|+++++||++++|+|+++||++|++.+++|+++++. +..++|||||+++||||+|++.+|+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999863 4689999999999999999999999
Q ss_pred HcCChhhhhc
Q psy15946 182 ESGELRRILK 191 (251)
Q Consensus 182 e~G~L~~~L~ 191 (251)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999985
No 4
>PTZ00062 glutaredoxin; Provisional
Probab=99.88 E-value=7.2e-22 Score=167.47 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=114.7
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCc---cceeeccCCHHHHHHHHHHhCCCCCCCCcee--eeccccc---cc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK---FDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHIG---TW 96 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~---~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~g---G~ 96 (251)
.|..|+++| |++|+.+..+|..+.-. +..+.|+.+ + +...+|.+. -+|+.++ |.
T Consensus 20 ~vl~f~a~w------~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~--~V~~vPtfv~~~~g~~i~r~~G~ 81 (204)
T PTZ00062 20 LVLYVKSSK------EPEYEQLMDVCNALVEDFPSLEFYVVNLA----------D--ANNEYGVFEFYQNSQLINSLEGC 81 (204)
T ss_pred EEEEEeCCC------CcchHHHHHHHHHHHHHCCCcEEEEEccc----------c--CcccceEEEEEECCEEEeeeeCC
Confidence 445555776 99999999999886432 233334433 3 566789663 3444432 22
Q ss_pred c--------------------------cccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHH
Q psy15946 97 Q--------------------------EKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEF 150 (251)
Q Consensus 97 ~--------------------------~~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el 150 (251)
+ ....++|+||+++. --.+.|++|.+++++|++++|+|.++||..+++.+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~-~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l 160 (204)
T PTZ00062 82 NTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGS-KTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREEL 160 (204)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccC-CCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHH
Confidence 1 23477999999952 11135999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCceEEECCeeeCChHHHHHHHHcCChhhhhcc
Q psy15946 151 KERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKP 192 (251)
Q Consensus 151 ~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e~G~L~~~L~~ 192 (251)
++++| ++++|||||||++|||+|+|++|+++|+|+++|..
T Consensus 161 ~~~sg--~~TvPqVfI~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 161 KVYSN--WPTYPQLYVNGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred HHHhC--CCCCCeEEECCEEEcChHHHHHHHHcCChhhhhhh
Confidence 99997 89999999999999999999999999999999865
No 5
>PRK10824 glutaredoxin-4; Provisional
Probab=99.87 E-value=5.7e-22 Score=153.40 Aligned_cols=93 Identities=18% Similarity=0.288 Sum_probs=84.0
Q ss_pred ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946 99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE 178 (251)
Q Consensus 99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~ 178 (251)
+..++|+||+++. --.+.||+|.+++++|++++++|.++|+..+++.+++|++++| ++|+|||||||++|||+|+|.
T Consensus 12 I~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg--~~TVPQIFI~G~~IGG~ddl~ 88 (115)
T PRK10824 12 IAENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYAN--WPTFPQLWVDGELVGGCDIVI 88 (115)
T ss_pred HhcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhC--CCCCCeEEECCEEEcChHHHH
Confidence 4578899999861 1223599999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHcCChhhhhccCC
Q psy15946 179 RLNESGELRRILKPYK 194 (251)
Q Consensus 179 ~l~e~G~L~~~L~~~~ 194 (251)
+|+++|+|.++|+.+.
T Consensus 89 ~l~~~G~L~~lL~~~~ 104 (115)
T PRK10824 89 EMYQRGELQQLIKETA 104 (115)
T ss_pred HHHHCCCHHHHHHHHH
Confidence 9999999999997654
No 6
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.86 E-value=2.3e-21 Score=146.28 Aligned_cols=89 Identities=27% Similarity=0.372 Sum_probs=80.8
Q ss_pred ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946 99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE 178 (251)
Q Consensus 99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~ 178 (251)
...++|+||+++. .-++.||+|.+++++|++++|+|+++||..+++.+++|.+++| +.++|+|||||++|||+|+|.
T Consensus 9 i~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg--~~tvP~vfi~g~~iGG~ddl~ 85 (97)
T TIGR00365 9 IKENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN--WPTIPQLYVKGEFVGGCDIIM 85 (97)
T ss_pred hccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC--CCCCCEEEECCEEEeChHHHH
Confidence 3567899998853 3334699999999999999999999999999999999999997 789999999999999999999
Q ss_pred HHHHcCChhhhh
Q psy15946 179 RLNESGELRRIL 190 (251)
Q Consensus 179 ~l~e~G~L~~~L 190 (251)
+|+++|+|.++|
T Consensus 86 ~l~~~g~L~~~l 97 (97)
T TIGR00365 86 EMYQSGELQTLL 97 (97)
T ss_pred HHHHCcChHHhC
Confidence 999999999876
No 7
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.85 E-value=3.2e-21 Score=145.99 Aligned_cols=88 Identities=23% Similarity=0.275 Sum_probs=79.4
Q ss_pred ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH---HHHHHHHHhCCCCCCCceEEECCeeeCChH
Q psy15946 99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE---TQQEFKERLGTDVINVPQIFVEGVHIGDAD 175 (251)
Q Consensus 99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~---~~~el~~~~g~~~~~vP~vfi~g~~iGG~d 175 (251)
+..++|+||++++ ||+|.+++++|++++++|+++||+.+++ .++++.+++| +.++|+|||+|++|||+|
T Consensus 5 i~~~~Vvvysk~~------Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg--~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 5 VSEKAVVIFSRSS------CCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC--SPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hccCCEEEEECCC------CHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcC--CCCcCeEEECCEEEcCHH
Confidence 4568899999995 9999999999999999999999988755 5567777776 899999999999999999
Q ss_pred HHHHHHHcCChhhhhccCC
Q psy15946 176 AIERLNESGELRRILKPYK 194 (251)
Q Consensus 176 ~l~~l~e~G~L~~~L~~~~ 194 (251)
++.+|+++|+|+++|+.+.
T Consensus 77 dl~~l~~~G~L~~~l~~~~ 95 (99)
T TIGR02189 77 NVMALHISGSLVPMLKQAG 95 (99)
T ss_pred HHHHHHHcCCHHHHHHHhC
Confidence 9999999999999997753
No 8
>PHA03050 glutaredoxin; Provisional
Probab=99.84 E-value=8.5e-21 Score=145.77 Aligned_cols=89 Identities=19% Similarity=0.289 Sum_probs=81.8
Q ss_pred ccchheeeeeeecccccCCCcchHHHHHHHHhcCC---ceeEEEcCC---CHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946 99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV---KFDDKDVFM---SRETQQEFKERLGTDVINVPQIFVEGVHIG 172 (251)
Q Consensus 99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v---~~~e~dv~~---~~~~~~el~~~~g~~~~~vP~vfi~g~~iG 172 (251)
...++|+||++++ ||+|.+++++|+++++ .|+++|++. +.+.+++|.+++| +.+||+|||+|++||
T Consensus 10 i~~~~V~vys~~~------CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG--~~tVP~IfI~g~~iG 81 (108)
T PHA03050 10 LANNKVTIFVKFT------CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG--GRTVPRIFFGKTSIG 81 (108)
T ss_pred hccCCEEEEECCC------ChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcC--CCCcCEEEECCEEEe
Confidence 3567899999995 9999999999999999 799999986 6789999999998 789999999999999
Q ss_pred ChHHHHHHHHcCChhhhhccCCC
Q psy15946 173 DADAIERLNESGELRRILKPYKS 195 (251)
Q Consensus 173 G~d~l~~l~e~G~L~~~L~~~~~ 195 (251)
|+|++++|+++|+|.++|+.++.
T Consensus 82 G~ddl~~l~~~g~L~~~l~~~~~ 104 (108)
T PHA03050 82 GYSDLLEIDNMDALGDILSSIGV 104 (108)
T ss_pred ChHHHHHHHHcCCHHHHHHHccc
Confidence 99999999999999999988643
No 9
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.83 E-value=3.9e-21 Score=154.98 Aligned_cols=75 Identities=36% Similarity=0.706 Sum_probs=69.7
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCC--CCCCCCceeeecccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~--g~~~vP~i~i~g~~~gG~~~~ 99 (251)
+|+|||||++|+|+|||+|.+||++|++++|+|+|+||+.++++++||++++|. ++.++|+|||+|++++|+++.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 589999999999999999999999999999999999999999999999999863 358999999999999997744
No 10
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.82 E-value=6.3e-20 Score=136.45 Aligned_cols=86 Identities=28% Similarity=0.395 Sum_probs=77.3
Q ss_pred ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946 99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE 178 (251)
Q Consensus 99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~ 178 (251)
...++|+||+++. .-...|++|.+++++|++++++|+++|+..+++.+++|.+++| ..++|+|||+|++|||+++++
T Consensus 5 i~~~~vvvf~k~~-~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g--~~tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 5 IKENPVVLFMKGT-PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN--WPTFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred hccCCEEEEEcCC-CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhC--CCCCCEEEECCEEEeCHHHHH
Confidence 4567899998851 1123599999999999999999999999999999999999997 789999999999999999999
Q ss_pred HHHHcCChh
Q psy15946 179 RLNESGELR 187 (251)
Q Consensus 179 ~l~e~G~L~ 187 (251)
+||++|+|+
T Consensus 82 ~l~~~g~L~ 90 (90)
T cd03028 82 EMHESGELQ 90 (90)
T ss_pred HHHHcCCcC
Confidence 999999984
No 11
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.80 E-value=2.4e-19 Score=129.63 Aligned_cols=79 Identities=29% Similarity=0.518 Sum_probs=75.4
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHHc
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNES 183 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e~ 183 (251)
|+||+++ +||+|.+++++|++++++|+++|++.+++.++++.+++| ..++|+|||+|++|||++++.+|+++
T Consensus 1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g--~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSG--RRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhC--CCCcCEEEECCEEEcChHHHHHHHHc
Confidence 6899999 499999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred CChhhhh
Q psy15946 184 GELRRIL 190 (251)
Q Consensus 184 G~L~~~L 190 (251)
|+|+.+|
T Consensus 73 g~l~~~l 79 (79)
T TIGR02181 73 GKLDPLL 79 (79)
T ss_pred CChhhhC
Confidence 9999876
No 12
>PRK10638 glutaredoxin 3; Provisional
Probab=99.80 E-value=2.9e-19 Score=130.75 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=77.6
Q ss_pred hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
.+|+||+++. |++|.+++.+|+.++++|+++||+.+++.++++.+++| ..++|+||++|++|||++++.+|+
T Consensus 2 ~~v~ly~~~~------Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g--~~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 2 ANVEIYTKAT------CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSG--RTTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred CcEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC--CCCcCEEEECCEEEeCHHHHHHHH
Confidence 4799999994 99999999999999999999999999989999999987 789999999999999999999999
Q ss_pred HcCChhhhhc
Q psy15946 182 ESGELRRILK 191 (251)
Q Consensus 182 e~G~L~~~L~ 191 (251)
++|+|.++|+
T Consensus 74 ~~g~l~~~~~ 83 (83)
T PRK10638 74 ARGGLDPLLK 83 (83)
T ss_pred HcCCHHHHhC
Confidence 9999999874
No 13
>KOG1752|consensus
Probab=99.76 E-value=2e-18 Score=131.12 Aligned_cols=88 Identities=27% Similarity=0.399 Sum_probs=78.2
Q ss_pred ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChH
Q psy15946 99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDAD 175 (251)
Q Consensus 99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d 175 (251)
...++||||++++ |++|.+++.+|.+.++.+..++++.+ .+++++|.+++| ++++|+|||+|++|||++
T Consensus 11 i~~~~VVifSKs~------C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg--~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 11 ISENPVVIFSKSS------CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTG--QRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred hhcCCEEEEECCc------CchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcC--CCCCCEEEECCEEEcCHH
Confidence 4578899999995 99999999999999998777776543 478888888887 889999999999999999
Q ss_pred HHHHHHHcCChhhhhccCC
Q psy15946 176 AIERLNESGELRRILKPYK 194 (251)
Q Consensus 176 ~l~~l~e~G~L~~~L~~~~ 194 (251)
+|++||.+|+|.++|+.+.
T Consensus 83 dl~~lh~~G~L~~~l~~~~ 101 (104)
T KOG1752|consen 83 DLMALHKSGELVPLLKEAG 101 (104)
T ss_pred HHHHHHHcCCHHHHHHHhh
Confidence 9999999999999998754
No 14
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.3e-18 Score=127.48 Aligned_cols=93 Identities=26% Similarity=0.352 Sum_probs=83.4
Q ss_pred cccchheeeeeeecccccCCCcchHHHHHHHHhcC-CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946 98 EKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA 176 (251)
Q Consensus 98 ~~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~-v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~ 176 (251)
+.+.++|++|.+.. --.+.|.+..++..+|..+| ++|..+||..|++.|+.|++.++ |+|+||+||+|++|||.|.
T Consensus 11 ~i~~n~VvLFMKGt-p~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~--WPT~PQLyi~GEfvGG~DI 87 (105)
T COG0278 11 QIKENPVVLFMKGT-PEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSN--WPTFPQLYVNGEFVGGCDI 87 (105)
T ss_pred HhhcCceEEEecCC-CCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcC--CCCCceeeECCEEeccHHH
Confidence 34678899999874 23356777889999999999 89999999999999999999996 9999999999999999999
Q ss_pred HHHHHHcCChhhhhccC
Q psy15946 177 IERLNESGELRRILKPY 193 (251)
Q Consensus 177 l~~l~e~G~L~~~L~~~ 193 (251)
+.+|+++|+|+++|+..
T Consensus 88 v~Em~q~GELq~~l~~~ 104 (105)
T COG0278 88 VREMYQSGELQTLLKEA 104 (105)
T ss_pred HHHHHHcchHHHHHHhc
Confidence 99999999999999763
No 15
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.74 E-value=7.4e-18 Score=120.16 Aligned_cols=73 Identities=27% Similarity=0.481 Sum_probs=68.8
Q ss_pred hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
++|+||+++. |++|.+++++|++++|+|+++|+..+++.+++|.+++| ..++|+|||||++|||+++|.+|+
T Consensus 1 ~~v~ly~~~~------C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g--~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRLG------CEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTG--SSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecCC------ChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC--CCCcCEEEECCEEEeCHHHHHhhc
Confidence 4689999994 99999999999999999999999999999999999997 689999999999999999999987
Q ss_pred H
Q psy15946 182 E 182 (251)
Q Consensus 182 e 182 (251)
+
T Consensus 73 ~ 73 (73)
T cd03027 73 E 73 (73)
T ss_pred C
Confidence 4
No 16
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.74 E-value=1.1e-17 Score=119.23 Aligned_cols=74 Identities=31% Similarity=0.533 Sum_probs=69.4
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCC-CCceEEECCeeeCChHHHHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVI-NVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~-~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
+|+||+++. |++|.+++++|++++++|+++|++.+++.++++.+..| .. ++|+|||+|++|||++++.+|+
T Consensus 1 ~i~ly~~~~------Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~--~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPN------CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG--GRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCC------ChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC--CCCccCEEEECCEEEeChHHHHHHH
Confidence 489999994 99999999999999999999999999999999999887 45 9999999999999999999999
Q ss_pred HcC
Q psy15946 182 ESG 184 (251)
Q Consensus 182 e~G 184 (251)
++|
T Consensus 73 ~~g 75 (75)
T cd03418 73 RKG 75 (75)
T ss_pred hCc
Confidence 987
No 17
>KOG2824|consensus
Probab=99.73 E-value=4.9e-18 Score=146.85 Aligned_cols=150 Identities=27% Similarity=0.445 Sum_probs=109.8
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCC--CCCCCCceeeecccccccccc
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~--g~~~vP~i~i~g~~~gG~~~~ 99 (251)
.++.||||+|+.+|+|+|+.+|..|+++|++++|.|+|+||+.|.++++||++++|. ...++|++||+|+++||.++.
T Consensus 129 ge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV 208 (281)
T KOG2824|consen 129 GEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEV 208 (281)
T ss_pred CCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHh
Confidence 466999999999999999999999999999999999999999999999999999985 467889999999999996633
Q ss_pred cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE-ECCeeeCChHHHH
Q psy15946 100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGDADAIE 178 (251)
Q Consensus 100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG~d~l~ 178 (251)
. .|...| +|.++++ .+|+.= --.+-.||+..|.
T Consensus 209 ~--------------------------~LnE~G----------------kL~~lL~----~~p~~~~~~C~~CGg~rFlp 242 (281)
T KOG2824|consen 209 V--------------------------RLNEEG----------------KLGKLLK----GIPCEGGGVCESCGGARFLP 242 (281)
T ss_pred h--------------------------hhhhcc----------------hHHHHHh----cCCCCCCCcCCCcCCcceEe
Confidence 2 122222 2334433 223110 0113455555555
Q ss_pred HHHHcCChhhhhccCCCCCCCccccccCCcceeeCCCCCC
Q psy15946 179 RLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNG 218 (251)
Q Consensus 179 ~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~~~~~C~~C~g 218 (251)
--...|.-+ +.++.........|..|+.+|++.|+.|..
T Consensus 243 C~~C~GS~k-v~~~~~~~~~~~rC~~CNENGLvrCp~Cs~ 281 (281)
T KOG2824|consen 243 CSNCHGSCK-VHEEEEDDGGVLRCLECNENGLVRCPVCSN 281 (281)
T ss_pred cCCCCCcee-eeeeccCCCcEEECcccCCCCceeCCccCC
Confidence 555555432 333333445567999999999999999963
No 18
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=7.2e-17 Score=117.47 Aligned_cols=76 Identities=29% Similarity=0.562 Sum_probs=67.8
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
.|+||+++ +||+|.+++++|++.|++|+++|+.+++ +.++.+++..| ..++|+|||||++|||.+++.++
T Consensus 2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g--~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKG--QRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCC--CCCcCEEEECCEEEeCcccHHHH
Confidence 58999999 4999999999999999999999998887 55555666555 89999999999999999999999
Q ss_pred HHcCCh
Q psy15946 181 NESGEL 186 (251)
Q Consensus 181 ~e~G~L 186 (251)
+..|.|
T Consensus 74 ~~~~~l 79 (80)
T COG0695 74 EAKGKL 79 (80)
T ss_pred HhhccC
Confidence 998876
No 19
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.69 E-value=1.5e-16 Score=115.51 Aligned_cols=79 Identities=32% Similarity=0.494 Sum_probs=70.8
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCc--eeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVK--FDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE 178 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~--~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~ 178 (251)
|++|++++ ||+|.+++.+|++++++ |..++++.+ .+.++++.+.+| ..++|+|||+|++|||++++.
T Consensus 1 V~~f~~~~------Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g--~~~vP~v~i~g~~igg~~~~~ 72 (84)
T TIGR02180 1 VVVFSKSY------CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITG--QRTVPNIFINGKFIGGCSDLL 72 (84)
T ss_pred CEEEECCC------ChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhC--CCCCCeEEECCEEEcCHHHHH
Confidence 68999996 99999999999999998 888888653 556777888886 789999999999999999999
Q ss_pred HHHHcCChhhhh
Q psy15946 179 RLNESGELRRIL 190 (251)
Q Consensus 179 ~l~e~G~L~~~L 190 (251)
+|+++|+|..+|
T Consensus 73 ~~~~~g~l~~~~ 84 (84)
T TIGR02180 73 ALYKSGKLAELL 84 (84)
T ss_pred HHHHcCChhhhC
Confidence 999999999876
No 20
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.67 E-value=3.9e-16 Score=112.97 Aligned_cols=79 Identities=28% Similarity=0.454 Sum_probs=71.0
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
+|++|++.+ ||+|.+++++|++++++|.+++++.+ .+.++++++.+| ..++|+||++|++|||++++.+
T Consensus 1 ~v~~y~~~~------Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g--~~~~P~v~~~g~~igg~~~~~~ 72 (82)
T cd03419 1 PVVVFSKSY------CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTG--QRTVPNVFIGGKFIGGCDDLMA 72 (82)
T ss_pred CEEEEEcCC------CHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhC--CCCCCeEEECCEEEcCHHHHHH
Confidence 489999985 99999999999999999998887654 556788999887 8899999999999999999999
Q ss_pred HHHcCChhhh
Q psy15946 180 LNESGELRRI 189 (251)
Q Consensus 180 l~e~G~L~~~ 189 (251)
|.++|+|+++
T Consensus 73 ~~~~g~l~~~ 82 (82)
T cd03419 73 LHKSGKLVKL 82 (82)
T ss_pred HHHcCCccCC
Confidence 9999999764
No 21
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.64 E-value=8.3e-16 Score=109.17 Aligned_cols=70 Identities=20% Similarity=0.449 Sum_probs=63.2
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
+|+||+++. ||+|.+++++|++++++|+++|++.+. ..++++.++| ..++|+|||||++|||+++|.++.
T Consensus 2 ~v~lys~~~------Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g--~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPG------CPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTG--AMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCC------CHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhC--CCCcCeEEECCEEEeCHHHHHHHh
Confidence 689999994 999999999999999999999998887 4567777776 789999999999999999998874
No 22
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.63 E-value=2e-15 Score=111.19 Aligned_cols=75 Identities=24% Similarity=0.480 Sum_probs=65.7
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcC-----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE 178 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~-----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~ 178 (251)
|+||++++ ||+|.+++++|++++ +.|+++|+..+...++++.+++|....++|+|||||++|||+++|.
T Consensus 2 V~vys~~~------Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~ 75 (86)
T TIGR02183 2 VVIFGRPG------CPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFE 75 (86)
T ss_pred EEEEeCCC------CccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHH
Confidence 78999995 999999999999984 6799999987776778899888722379999999999999999999
Q ss_pred HHHHcC
Q psy15946 179 RLNESG 184 (251)
Q Consensus 179 ~l~e~G 184 (251)
++++++
T Consensus 76 ~~~~~~ 81 (86)
T TIGR02183 76 QLVKEN 81 (86)
T ss_pred HHHHhc
Confidence 998775
No 23
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.62 E-value=2.1e-15 Score=109.23 Aligned_cols=73 Identities=22% Similarity=0.424 Sum_probs=65.0
Q ss_pred ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946 99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE 178 (251)
Q Consensus 99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~ 178 (251)
.+.++|+||++++ |++|.++|++|+++||+|+++|++.+.+. +++.+.+| ..++|+|||||++|||+++|.
T Consensus 5 ~~~~~V~ly~~~~------Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g--~~~vP~i~i~g~~igG~~~l~ 75 (79)
T TIGR02190 5 RKPESVVVFTKPG------CPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTG--ATTVPQVFIGGKLIGGSDELE 75 (79)
T ss_pred CCCCCEEEEECCC------CHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHC--CCCcCeEEECCEEEcCHHHHH
Confidence 4567899999995 99999999999999999999999887554 56777776 899999999999999999988
Q ss_pred HH
Q psy15946 179 RL 180 (251)
Q Consensus 179 ~l 180 (251)
++
T Consensus 76 ~~ 77 (79)
T TIGR02190 76 AY 77 (79)
T ss_pred HH
Confidence 75
No 24
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.61 E-value=3.5e-15 Score=109.45 Aligned_cols=75 Identities=21% Similarity=0.423 Sum_probs=67.6
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHh-----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAI 177 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~-----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l 177 (251)
+|+||++++ |++|.+++++|++ .+++|+++|+..+....++|.++.+.+..++|+|||||++|||+++|
T Consensus 2 ~v~iy~~~~------C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~ 75 (85)
T PRK11200 2 FVVIFGRPG------CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF 75 (85)
T ss_pred EEEEEeCCC------ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence 589999995 9999999999999 89999999999888778899998873337999999999999999999
Q ss_pred HHHHHc
Q psy15946 178 ERLNES 183 (251)
Q Consensus 178 ~~l~e~ 183 (251)
.++++.
T Consensus 76 ~~~~~~ 81 (85)
T PRK11200 76 EAYVKE 81 (85)
T ss_pred HHHHHH
Confidence 998765
No 25
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.61 E-value=1.3e-15 Score=114.70 Aligned_cols=88 Identities=32% Similarity=0.455 Sum_probs=73.3
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC-------CCCCCCceEEECCeeeCChHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG-------TDVINVPQIFVEGVHIGDADA 176 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g-------~~~~~vP~vfi~g~~iGG~d~ 176 (251)
|.||+||..+.++.-.+++++..||+.++|+|+++||+++++.++.+++..| .+...+||||++++|+|++|+
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~ 82 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED 82 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence 7899999999999999999999999999999999999999999999999983 234566899999999999999
Q ss_pred HHHHHHcCChhhhhc
Q psy15946 177 IERLNESGELRRILK 191 (251)
Q Consensus 177 l~~l~e~G~L~~~L~ 191 (251)
+.+++|.|+|.+.|+
T Consensus 83 f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 83 FEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHCTT-HHHHHT
T ss_pred HHHHHhhCHHHHHhC
Confidence 999999999999885
No 26
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.61 E-value=1.6e-15 Score=114.35 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=65.2
Q ss_pred cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
.+.++|+||+++. -.+.+||+|.+|+++|++++++|+++||..+++.++++++++ |+.++|+|||+|+++||+++.
T Consensus 9 i~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~t--g~~tvP~vfi~g~~iGG~ddl 84 (97)
T TIGR00365 9 IKENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYS--NWPTIPQLYVKGEFVGGCDII 84 (97)
T ss_pred hccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh--CCCCCCEEEECCEEEeChHHH
Confidence 3578999998820 111139999999999999999999999999999999999987 578999999999999998754
No 27
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.61 E-value=1.2e-15 Score=115.42 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=61.8
Q ss_pred cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHH---HHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRET---QQEFKERLGTDVINVPQIFVEGVHIGTWQ 97 (251)
Q Consensus 21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~---~~el~~~~g~g~~~vP~i~i~g~~~gG~~ 97 (251)
.+.++|+|||++| ||+|.+||++|++++++|+++||+.+++. ++++.+++ |+.++|+|||+|+++||++
T Consensus 5 i~~~~Vvvysk~~------Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~t--g~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 5 VSEKAVVIFSRSS------CCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLG--CSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hccCCEEEEECCC------CHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhc--CCCCcCeEEECCEEEcCHH
Confidence 4568999999997 99999999999999999999999988764 34566555 6899999999999999998
Q ss_pred cc
Q psy15946 98 EK 99 (251)
Q Consensus 98 ~~ 99 (251)
+.
T Consensus 77 dl 78 (99)
T TIGR02189 77 NV 78 (99)
T ss_pred HH
Confidence 64
No 28
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.60 E-value=5.4e-15 Score=103.12 Aligned_cols=72 Identities=33% Similarity=0.608 Sum_probs=67.7
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e 182 (251)
+|++|++++ |++|.+++.+|++++++|.++|+..+++.+++|.+++| ..++|++|++|++|||++++++|++
T Consensus 1 ~v~ly~~~~------Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~--~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSKST------CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSG--WPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEECCC------CHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhC--CCCcCEEEECCEEEecHHHHHHhhC
Confidence 488999995 99999999999999999999999999999999999987 7899999999999999999999874
No 29
>PHA03050 glutaredoxin; Provisional
Probab=99.60 E-value=2.2e-15 Score=115.76 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=64.1
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCC---ccceeeccC---CHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV---KFDDKDVFM---SRETQQEFKERLGTDVINVPQIFVEGVHIGT 95 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v---~~~e~dv~~---d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG 95 (251)
+.++|+||+++| ||||.+||++|+++++ +|+++||+. +.++++++.+++ |..+||+|||+|+++||
T Consensus 11 ~~~~V~vys~~~------CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~t--G~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 11 ANNKVTIFVKFT------CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT--GGRTVPRIFFGKTSIGG 82 (108)
T ss_pred ccCCEEEEECCC------ChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHc--CCCCcCEEEECCEEEeC
Confidence 567999999997 9999999999999999 899999987 678899999987 57899999999999999
Q ss_pred ccccc
Q psy15946 96 WQEKE 100 (251)
Q Consensus 96 ~~~~~ 100 (251)
+++..
T Consensus 83 ~ddl~ 87 (108)
T PHA03050 83 YSDLL 87 (108)
T ss_pred hHHHH
Confidence 97553
No 30
>PRK10824 glutaredoxin-4; Provisional
Probab=99.60 E-value=2.3e-15 Score=116.54 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=65.9
Q ss_pred cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
.+.++|+||+++ .-...+||||.+|+++|.+++++|.++||..+++.+++|++++ |+.++|||||+|+++||+++.
T Consensus 12 I~~~~Vvvf~Kg-~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~s--g~~TVPQIFI~G~~IGG~ddl 87 (115)
T PRK10824 12 IAENPILLYMKG-SPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYA--NWPTFPQLWVDGELVGGCDIV 87 (115)
T ss_pred HhcCCEEEEECC-CCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHh--CCCCCCeEEECCEEEcChHHH
Confidence 467899999995 0000139999999999999999999999999999999999998 699999999999999998754
No 31
>KOG0911|consensus
Probab=99.59 E-value=3.9e-15 Score=125.73 Aligned_cols=90 Identities=27% Similarity=0.375 Sum_probs=81.7
Q ss_pred cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
..++|+||.+.. --.+.|.+.+++..+|+.++|+|..+||..|++.|+.|++.+. |+|+|||||+|+++||+|.+..
T Consensus 137 ~a~~v~lFmKG~-p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSd--WPTfPQlyI~GEFiGGlDIl~~ 213 (227)
T KOG0911|consen 137 KAKPVMLFMKGT-PEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSD--WPTFPQLYVKGEFIGGLDILKE 213 (227)
T ss_pred ccCeEEEEecCC-CCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcC--CCCccceeECCEeccCcHHHHH
Confidence 367899999985 3344577778999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHHcCChhhhhcc
Q psy15946 180 LNESGELRRILKP 192 (251)
Q Consensus 180 l~e~G~L~~~L~~ 192 (251)
|+++|+|...|+.
T Consensus 214 m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 214 MHEKGELVYTLKE 226 (227)
T ss_pred HhhcccHHHHhhc
Confidence 9999999999875
No 32
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.59 E-value=1.5e-15 Score=113.20 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=69.7
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCC--CCCCCCceeeecccccccccc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~--g~~~vP~i~i~g~~~gG~~~~ 99 (251)
|+||+||.+|+|.+-..|+.++.+|++++|+|+++||+.+++.+++|++.+|. +..++|||||+++++||+++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl 77 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAF 77 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHH
Confidence 89999999999999999999999999999999999999999999999999864 578999999999999998754
No 33
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.59 E-value=3.6e-15 Score=106.22 Aligned_cols=67 Identities=24% Similarity=0.399 Sum_probs=62.9
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
+|+||++++ ||+|.+|+++|++++|+|+++||..+++.++++.+++ +..++|++|++|+++||+++.
T Consensus 2 ~v~ly~~~~------C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~--g~~~vP~v~i~~~~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSRLG------CEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERT--GSSVVPQIFFNEKLVGGLTDL 68 (73)
T ss_pred EEEEEecCC------ChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh--CCCCcCEEEECCEEEeCHHHH
Confidence 699999997 9999999999999999999999999999999999998 468899999999999998864
No 34
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.58 E-value=4.9e-15 Score=107.32 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=62.6
Q ss_pred cccCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946 19 QEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE 98 (251)
Q Consensus 19 ~~~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~ 98 (251)
+..+.++|+||+++| ||+|.+||++|++++++|+++||+.+.+. +++.+++ |..++|+++++|++++|+++
T Consensus 3 ~~~~~~~V~ly~~~~------Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~--g~~~vP~i~i~g~~igG~~~ 73 (79)
T TIGR02190 3 QARKPESVVVFTKPG------CPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVT--GATTVPQVFIGGKLIGGSDE 73 (79)
T ss_pred CcCCCCCEEEEECCC------CHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHH--CCCCcCeEEECCEEEcCHHH
Confidence 345678999999997 99999999999999999999999988664 5677666 68999999999999999875
Q ss_pred c
Q psy15946 99 K 99 (251)
Q Consensus 99 ~ 99 (251)
.
T Consensus 74 l 74 (79)
T TIGR02190 74 L 74 (79)
T ss_pred H
Confidence 4
No 35
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.57 E-value=5.8e-15 Score=109.68 Aligned_cols=75 Identities=24% Similarity=0.289 Sum_probs=64.7
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
..++||||+++ .-...+||+|.+|+++|++++++|+++||..+++.++++.+.+ |..++|+|||+|++++|+++.
T Consensus 6 ~~~~vvvf~k~-~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~--g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 6 KENPVVLFMKG-TPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYS--NWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred ccCCEEEEEcC-CCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHh--CCCCCCEEEECCEEEeCHHHH
Confidence 56799999983 0011139999999999999999999999999999999999987 578999999999999998754
No 36
>PRK10638 glutaredoxin 3; Provisional
Probab=99.57 E-value=7.2e-15 Score=107.33 Aligned_cols=69 Identities=23% Similarity=0.431 Sum_probs=63.6
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
|++|+||++++ ||+|.+|+++|++++++|+++||+.+++.++++.++. |..++|+++++|++++|+++.
T Consensus 1 m~~v~ly~~~~------Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~--g~~~vP~i~~~g~~igG~~~~ 69 (83)
T PRK10638 1 MANVEIYTKAT------CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRS--GRTTVPQIFIDAQHIGGCDDL 69 (83)
T ss_pred CCcEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHh--CCCCcCEEEECCEEEeCHHHH
Confidence 55899999997 9999999999999999999999999998889999887 578999999999999998754
No 37
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.54 E-value=1.5e-14 Score=103.04 Aligned_cols=68 Identities=29% Similarity=0.503 Sum_probs=61.6
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
+|+||++++ ||+|.+|+++|++++++|+++||+.+++.++++.+..| ...++|+++++|+.++|+++.
T Consensus 1 ~i~ly~~~~------Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~-~~~~vP~v~i~g~~igg~~~~ 68 (75)
T cd03418 1 KVEIYTKPN------CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG-GRRTVPQIFIGDVHIGGCDDL 68 (75)
T ss_pred CEEEEeCCC------ChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC-CCCccCEEEECCEEEeChHHH
Confidence 489999997 99999999999999999999999999999999988875 333899999999999998754
No 38
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-14 Score=105.78 Aligned_cols=67 Identities=25% Similarity=0.462 Sum_probs=56.4
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH-HHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE-TQQEFKERLGTDVINVPQIFVEGVHIGTWQE 98 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~-~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~ 98 (251)
.|+|||+++ ||||.+||++|++++++|+++|++.++. .++++.+... |..++|+|||+|++++|.++
T Consensus 2 ~v~iyt~~~------CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~-g~~tvP~I~i~~~~igg~~d 69 (80)
T COG0695 2 NVTIYTKPG------CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGK-GQRTVPQIFIGGKHVGGCDD 69 (80)
T ss_pred CEEEEECCC------CchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhC-CCCCcCEEEECCEEEeCccc
Confidence 689999997 9999999999999999999999998883 3334444433 78999999999999998654
No 39
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.54 E-value=1.3e-14 Score=104.65 Aligned_cols=66 Identities=26% Similarity=0.448 Sum_probs=61.8
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
|+||++++ ||+|.+|+++|++++++|+++||+.+++.++++.+++ |..++|+|+|+|++++|+++.
T Consensus 1 v~ly~~~~------Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~--g~~~vP~i~i~g~~igg~~~~ 66 (79)
T TIGR02181 1 VTIYTKPY------CPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRS--GRRTVPQIFIGDVHVGGCDDL 66 (79)
T ss_pred CEEEecCC------ChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHh--CCCCcCEEEECCEEEcChHHH
Confidence 68999997 9999999999999999999999999999999999887 589999999999999998754
No 40
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.54 E-value=2.4e-14 Score=98.05 Aligned_cols=60 Identities=33% Similarity=0.597 Sum_probs=57.1
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i 171 (251)
|++|++. +|++|.+++++|++++++|+++||+.+++.+++|++++| ..++|+|||||++|
T Consensus 1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g--~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG--VRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS--SSSSSEEEETTEEE
T ss_pred cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC--CCccCEEEECCEEC
Confidence 6899998 599999999999999999999999999999999999997 89999999999986
No 41
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.53 E-value=2e-14 Score=98.42 Aligned_cols=60 Identities=32% Similarity=0.547 Sum_probs=56.8
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
|+||++++ ||+|.+++++|++++++|+++||+.+++.++++++.+ |..++|+++++|+++
T Consensus 1 V~vy~~~~------C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~--g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPG------CPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELS--GVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTT------SHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHH--SSSSSSEEEETTEEE
T ss_pred cEEEEcCC------CcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHc--CCCccCEEEECCEEC
Confidence 79999996 9999999999999999999999999999999999998 689999999999874
No 42
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.52 E-value=2.6e-14 Score=101.46 Aligned_cols=66 Identities=15% Similarity=0.357 Sum_probs=58.6
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
+|+|||+++ ||+|.+|+++|++++++|+++||+.+.+ .++++.+. |..++|++|++|++++|+++.
T Consensus 2 ~v~lys~~~------Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~--g~~~vP~ifi~g~~igg~~~l 67 (72)
T cd03029 2 SVSLFTKPG------CPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVT--GAMTVPQVFIDGELIGGSDDL 67 (72)
T ss_pred eEEEEECCC------CHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHh--CCCCcCeEEECCEEEeCHHHH
Confidence 699999997 9999999999999999999999998884 55676665 688999999999999997654
No 43
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.49 E-value=6.4e-14 Score=102.71 Aligned_cols=69 Identities=22% Similarity=0.430 Sum_probs=62.2
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHH-----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~-----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
+|+||+++| ||+|.+|+++|++ .+++|+++||..+....+++.++.|.+..++|+|||+|++++|+++.
T Consensus 2 ~v~iy~~~~------C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~ 75 (85)
T PRK11200 2 FVVIFGRPG------CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF 75 (85)
T ss_pred EEEEEeCCC------ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence 799999997 9999999999999 89999999999988778889888864457899999999999998754
No 44
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.49 E-value=4.7e-14 Score=102.86 Aligned_cols=71 Identities=11% Similarity=0.271 Sum_probs=64.2
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccccchhe
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKI 104 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~~~~V 104 (251)
+|+|||+++ ||+|.++|++|+++||+|+++||+.+++++++++. . |..++|++++++..+.||++.+..+.
T Consensus 2 ~v~lYt~~~------Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~--g~~~vPvv~i~~~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 2 RITIYTRND------CVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-Q--GFRQLPVVIAGDLSWSGFRPDMINRL 72 (81)
T ss_pred EEEEEeCCC------CHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c--CCCCcCEEEECCEEEecCCHHHHHHH
Confidence 699999997 99999999999999999999999999999888875 3 67899999999999999998765543
No 45
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.48 E-value=1e-13 Score=129.58 Aligned_cols=86 Identities=23% Similarity=0.293 Sum_probs=71.9
Q ss_pred chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC------CCCCCCceEEECCeeeCCh
Q psy15946 101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHIGDA 174 (251)
Q Consensus 101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g------~~~~~vP~vfi~g~~iGG~ 174 (251)
|.+|+|||+++ ||+|.++|++|+++||+|+++||+.+++..+.+.+..+ .+..++|||||||++|||+
T Consensus 1 m~~V~vys~~~------Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf 74 (410)
T PRK12759 1 MVEVRIYTKTN------CPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGY 74 (410)
T ss_pred CCcEEEEeCCC------CHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCc
Confidence 35799999995 99999999999999999999999988755443333211 1378999999999999999
Q ss_pred HHHHHHHHcCChhhhhccCC
Q psy15946 175 DAIERLNESGELRRILKPYK 194 (251)
Q Consensus 175 d~l~~l~e~G~L~~~L~~~~ 194 (251)
++++. .+|+|..+|++.+
T Consensus 75 ~~l~~--~~g~l~~~~~~~~ 92 (410)
T PRK12759 75 DNLMA--RAGEVIARVKGSS 92 (410)
T ss_pred hHHHH--HhCCHHHHhcCCc
Confidence 99988 8999999998854
No 46
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.46 E-value=1.4e-13 Score=101.41 Aligned_cols=68 Identities=24% Similarity=0.453 Sum_probs=58.7
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
|+||+++| ||+|.+|+++|+++ +++|+++|+..+...++++.+..|.+..++|+|||+|++++|+++.
T Consensus 2 V~vys~~~------Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl 74 (86)
T TIGR02183 2 VVIFGRPG------CPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDF 74 (86)
T ss_pred EEEEeCCC------CccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHH
Confidence 79999997 99999999999998 4679999999877667888888753347999999999999998754
No 47
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.45 E-value=1.2e-13 Score=98.11 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=60.9
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc-cccccccccchh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV-HIGTWQEKEAGK 103 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~-~~gG~~~~~~~~ 103 (251)
|+||++++ ||+|.+|+++|++++++|+++||..+++.++++++ + |..++|+++++|. .++||++....+
T Consensus 1 v~ly~~~~------Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~--g~~~vP~v~~~g~~~~~G~~~~~~~~ 70 (72)
T TIGR02194 1 ITVYSKNN------CVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-Q--GFRQVPVIVADGDLSWSGFRPDKLKA 70 (72)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c--CCcccCEEEECCCcEEeccCHHHHHh
Confidence 58999996 99999999999999999999999999999998885 3 5788999999775 899998776543
No 48
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.42 E-value=4.6e-13 Score=93.23 Aligned_cols=67 Identities=30% Similarity=0.572 Sum_probs=61.8
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
+|++|+++| ||+|.+++.+|++++++|+++|+..+++.++++.+++ +..++|+++++|+.++|++..
T Consensus 1 ~v~ly~~~~------Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~--~~~~~P~~~~~~~~igg~~~~ 67 (72)
T cd02066 1 KVVVFSKST------CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELS--GWPTVPQIFINGEFIGGYDDL 67 (72)
T ss_pred CEEEEECCC------CHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHh--CCCCcCEEEECCEEEecHHHH
Confidence 489999997 9999999999999999999999999999899999887 578999999999999998654
No 49
>PTZ00062 glutaredoxin; Provisional
Probab=99.38 E-value=8.4e-13 Score=112.12 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=65.4
Q ss_pred cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
.+.++|+||++.. -....||+|++++++|++++|+|.++||..+++.++++++++ |+.++|+|||+|+++||+++.
T Consensus 110 i~~~~Vvvf~Kg~-~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~s--g~~TvPqVfI~G~~IGG~d~l 185 (204)
T PTZ00062 110 IRNHKILLFMKGS-KTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYS--NWPTYPQLYVNGELIGGHDII 185 (204)
T ss_pred HhcCCEEEEEccC-CCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHh--CCCCCCeEEECCEEEcChHHH
Confidence 3678999999920 001139999999999999999999999999999999999987 689999999999999998754
No 50
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.36 E-value=2.2e-12 Score=120.61 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=82.6
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC------CCCCCCCceeeeccccccc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHIGTW 96 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g------~g~~~vP~i~i~g~~~gG~ 96 (251)
|.+|+|||++| ||+|.+||++|+++||+|+++||+.+++..+.+.+..+ +|..++|+|+|+|++++|+
T Consensus 1 m~~V~vys~~~------Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf 74 (410)
T PRK12759 1 MVEVRIYTKTN------CPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGY 74 (410)
T ss_pred CCcEEEEeCCC------CHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCc
Confidence 56899999997 99999999999999999999999988865443333211 2678999999999999999
Q ss_pred ccccc---------hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH
Q psy15946 97 QEKEA---------GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE 145 (251)
Q Consensus 97 ~~~~~---------~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~ 145 (251)
++... ..+-|+...+.-..-.++...+..+...+.-...+|+|++.|..
T Consensus 75 ~~l~~~~g~l~~~~~~~~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~ls~D~~ 132 (410)
T PRK12759 75 DNLMARAGEVIARVKGSSLTTFSKTYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVT 132 (410)
T ss_pred hHHHHHhCCHHHHhcCCcccccccccCCCccHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 76431 12333333332222346666666666666556678887766543
No 51
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.34 E-value=3e-12 Score=90.87 Aligned_cols=64 Identities=23% Similarity=0.372 Sum_probs=57.3
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe-eeCChHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV-HIGDADA 176 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~-~iGG~d~ 176 (251)
|+||+++ +|++|.+++++|++++++|+++|+..+++..+++++. | ..++|+||++|. ++||++.
T Consensus 1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g--~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-G--FRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-C--CcccCEEEECCCcEEeccCH
Confidence 5799999 5999999999999999999999999999999998864 6 679999999775 9999774
No 52
>KOG1752|consensus
Probab=99.32 E-value=3.6e-12 Score=96.94 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=58.2
Q ss_pred cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH---HHHHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLGTDVINVPQIFVEGVHIGTWQ 97 (251)
Q Consensus 21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~---~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~ 97 (251)
.+.++|||||+++ ||||..+|.+|.+.++.+..++++.++ +..+.+.+++ |..++|++||+|+++||.+
T Consensus 11 i~~~~VVifSKs~------C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~t--g~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 11 ISENPVVIFSKSS------CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLT--GQRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred hhcCCEEEEECCc------CchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhc--CCCCCCEEEECCEEEcCHH
Confidence 4678999999997 999999999999999988777776654 3344455444 6889999999999999977
Q ss_pred cc
Q psy15946 98 EK 99 (251)
Q Consensus 98 ~~ 99 (251)
+.
T Consensus 83 dl 84 (104)
T KOG1752|consen 83 DL 84 (104)
T ss_pred HH
Confidence 54
No 53
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.31 E-value=5e-12 Score=91.26 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=58.3
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC---HHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d---~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
+|++|+++| ||+|.+++++|++++++|++++++.+ .+.++++++++ |..++|++|++|++++|++..
T Consensus 1 ~v~~y~~~~------Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--g~~~~P~v~~~g~~igg~~~~ 70 (82)
T cd03419 1 PVVVFSKSY------CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELT--GQRTVPNVFIGGKFIGGCDDL 70 (82)
T ss_pred CEEEEEcCC------CHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHh--CCCCCCeEEECCEEEcCHHHH
Confidence 489999997 99999999999999999998888765 44567788877 688999999999999998753
No 54
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.31 E-value=6.5e-12 Score=91.52 Aligned_cols=65 Identities=14% Similarity=0.282 Sum_probs=59.3
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA 176 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~ 176 (251)
+|+||+++. |++|.++|++|+++||+|+++|++.+++..++++. .| ..++|+|++++..++|++.
T Consensus 2 ~v~lYt~~~------Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g--~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRND------CVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QG--FRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCC------CHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cC--CCCcCEEEECCEEEecCCH
Confidence 589999995 99999999999999999999999999999888876 35 7899999999999999873
No 55
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.26 E-value=1.3e-11 Score=89.36 Aligned_cols=66 Identities=29% Similarity=0.428 Sum_probs=56.1
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCc--cceeeccCC---HHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVK--FDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~--~~e~dv~~d---~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~ 99 (251)
|++|+++| ||+|.+++.+|++++++ |+.++|+.+ .+.++++.+.+ +..++|+++++|++++|+++.
T Consensus 1 V~~f~~~~------Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~--g~~~vP~v~i~g~~igg~~~~ 71 (84)
T TIGR02180 1 VVVFSKSY------CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEIT--GQRTVPNIFINGKFIGGCSDL 71 (84)
T ss_pred CEEEECCC------ChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHh--CCCCCCeEEECCEEEcCHHHH
Confidence 68999998 99999999999999998 888888764 34456677776 578999999999999997643
No 56
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.21 E-value=3.3e-11 Score=84.33 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=60.8
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKE 100 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~ 100 (251)
+|++|+++| |++|++++.+|++++++|.++|++.+++..+++.+.+ +..++|+++++|+.+.|+++..
T Consensus 1 ~i~lf~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~--~~~~vP~~~~~~~~~~g~~~~~ 68 (74)
T TIGR02196 1 KVKVYTTPW------CPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVL--GQRGVPVIVIGHKIIVGFDPEK 68 (74)
T ss_pred CEEEEcCCC------ChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHh--CCCcccEEEECCEEEeeCCHHH
Confidence 489999998 9999999999999999999999999998888888887 5788999999998888876543
No 57
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.06 E-value=4.5e-10 Score=78.34 Aligned_cols=68 Identities=19% Similarity=0.355 Sum_probs=60.6
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKE 100 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~ 100 (251)
.|++|+.+| |++|.+++.+|++++++|..+|++.+.+..+++.++. +..++|+++++|+.++|+++.+
T Consensus 1 ~v~l~~~~~------c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~--~~~~vP~i~~~~~~i~g~~~~~ 68 (73)
T cd02976 1 EVTVYTKPD------CPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLN--GYRSVPVVVIGDEHLSGFRPDK 68 (73)
T ss_pred CEEEEeCCC------ChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHc--CCcccCEEEECCEEEecCCHHH
Confidence 489999997 9999999999999999999999999888888888875 5688999999999998877543
No 58
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.03 E-value=1.5e-09 Score=75.77 Aligned_cols=66 Identities=27% Similarity=0.380 Sum_probs=59.7
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA 176 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~ 176 (251)
+|++|++++ |++|.+++.+|+..+++|.++|++.+++..+++.+..| ..++|.++++|+.++|++.
T Consensus 1 ~i~lf~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~--~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPW------CPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLG--QRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCC------ChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhC--CCcccEEEECCEEEeeCCH
Confidence 378999996 99999999999999999999999999888888988887 7899999999999988653
No 59
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.96 E-value=2.1e-09 Score=76.22 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=54.4
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee-cccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGT 95 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~-g~~~gG 95 (251)
+|+||+++| |++|++++.+|++++++|+.+|++.+++..+++.++.. +..++|+++++ |..+..
T Consensus 1 ~v~ly~~~~------C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~-~~~~vP~i~~~~g~~l~~ 65 (77)
T TIGR02200 1 TITVYGTTW------CGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNN-GNMTVPTVKFADGSFLTN 65 (77)
T ss_pred CEEEEECCC------ChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhC-CCceeCEEEECCCeEecC
Confidence 589999998 99999999999999999999999999888888887742 57889999764 455544
No 60
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.95 E-value=3.7e-09 Score=73.66 Aligned_cols=66 Identities=21% Similarity=0.361 Sum_probs=59.7
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA 176 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~ 176 (251)
.|++|++++ |++|.+++.+|+..+++|..+|++.+....+++.++.+ ..++|.|+++|+.++|++.
T Consensus 1 ~v~l~~~~~------c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~--~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPD------CPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNG--YRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCC------ChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcC--CcccCEEEECCEEEecCCH
Confidence 378999885 99999999999999999999999988888888988875 6899999999999999774
No 61
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.6e-09 Score=79.47 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=65.6
Q ss_pred cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcC-CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE 98 (251)
Q Consensus 21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~ 98 (251)
...+.|++|-+- +-..-.|.+..+|.++|...| ++|..+||..|++.|+.+++.+ +|.+.||++|+|+++||.|-
T Consensus 12 i~~n~VvLFMKG-tp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s--~WPT~PQLyi~GEfvGG~DI 87 (105)
T COG0278 12 IKENPVVLFMKG-TPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYS--NWPTFPQLYVNGEFVGGCDI 87 (105)
T ss_pred hhcCceEEEecC-CCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhc--CCCCCceeeECCEEeccHHH
Confidence 356788998764 233336999999999999999 8999999999999999999998 79999999999999999763
No 62
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.89 E-value=1.7e-09 Score=81.50 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=60.0
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC-------CCCCCCCceeeecccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG-------TDVINVPQIFVEGVHIGTWQ 97 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g-------~g~~~vP~i~i~g~~~gG~~ 97 (251)
.|.||+++.+|++..=..++++..+|+.++|+|+++||..+++.++.|++..| .+..-.|+||++++++|+|+
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 48899999999999999999999999999999999999999999999999874 23444589999999999987
Q ss_pred cc
Q psy15946 98 EK 99 (251)
Q Consensus 98 ~~ 99 (251)
+.
T Consensus 82 ~f 83 (99)
T PF04908_consen 82 DF 83 (99)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 63
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.78 E-value=2.2e-08 Score=70.84 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=55.3
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh-CCCCCCCceEEE-CCeeeCCh
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL-GTDVINVPQIFV-EGVHIGDA 174 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~-g~~~~~vP~vfi-~g~~iGG~ 174 (251)
+|+||++++ |++|.+++.+|+.++++|+.+|++.++...+++.++. + ..++|.+++ +|+.+...
T Consensus 1 ~v~ly~~~~------C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~--~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGTTW------CGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNG--NMTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEECCC------ChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCC--CceeCEEEECCCeEecCC
Confidence 478999996 9999999999999999999999999988888888886 4 789999976 56776643
No 64
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.71 E-value=2.6e-08 Score=69.11 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=47.5
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
+|++|+++| ||+|.+++.+|+++ +++|..+|++.+++ +.+.+ +..++|+++++|++.
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~--~i~~vPti~i~~~~~ 63 (67)
T cd02973 2 NIEVFVSPT------CPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEY--GVMSVPAIVINGKVE 63 (67)
T ss_pred EEEEEECCC------CCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHc--CCcccCEEEECCEEE
Confidence 689999998 99999999999975 68899999987765 44455 567899999998764
No 65
>KOG0911|consensus
Probab=98.61 E-value=1.1e-07 Score=80.84 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=65.4
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE 98 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~ 98 (251)
..+.|+||-+.. -..--|.+.+++..+|++++++|..+||..|.+.|+.+++.+ .|.+.||+||+|+++||.|-
T Consensus 137 ~a~~v~lFmKG~-p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fS--dWPTfPQlyI~GEFiGGlDI 210 (227)
T KOG0911|consen 137 KAKPVMLFMKGT-PEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFS--DWPTFPQLYVKGEFIGGLDI 210 (227)
T ss_pred ccCeEEEEecCC-CCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhc--CCCCccceeECCEeccCcHH
Confidence 457899998762 233369999999999999999999999999999999999998 79999999999999999773
No 66
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.58 E-value=1.5e-07 Score=65.16 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=48.2
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 172 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG 172 (251)
+|++|++++ |++|.+++.+|+.+ +++|..+|++.+++ +.+..| ..++|+++|+|++++
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~--i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPT------CPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYG--VMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCC------CCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcC--CcccCEEEECCEEEE
Confidence 478999996 99999999999876 68899999877654 555665 678999999999875
No 67
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.57 E-value=1.3e-07 Score=72.77 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=42.4
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 77 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g 77 (251)
|+||+.++ |++|++|+++|++++++|+++|+..++..++++.++++
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYPK------CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred CEEEECCC------CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence 58999996 99999999999999999999999999988888888763
No 68
>KOG4023|consensus
Probab=98.56 E-value=1.2e-07 Score=70.21 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=79.6
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC------CCCCCCceEEECCeeeCChHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHIGDADA 176 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g------~~~~~vP~vfi~g~~iGG~d~ 176 (251)
.|.+|++|..+....-..-.++..+|+.+.+.|+++|+.++.+.++++..... .+.+..||||-+.+|.|++|.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 47889999888777777788999999999999999999988877777665542 235688999999999999999
Q ss_pred HHHHHHcCChhhhhccCCCC
Q psy15946 177 IERLNESGELRRILKPYKSP 196 (251)
Q Consensus 177 l~~l~e~G~L~~~L~~~~~~ 196 (251)
..+..|++-|.+.|.-++..
T Consensus 83 F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 99999999999999887654
No 69
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.54 E-value=3.4e-07 Score=72.65 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=42.8
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.++ |++|++|+++|+++||+|+++|+..++..++++.+++
T Consensus 2 i~iY~~~~------C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTSPS------CTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred EEEEeCCC------ChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 89999996 9999999999999999999999999999999998886
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.50 E-value=1.2e-06 Score=75.04 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=81.8
Q ss_pred CCeEEEEee---cCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCceee--eccc
Q psy15946 23 AGKIVMYST---TMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH 92 (251)
Q Consensus 23 ~~~vvvyt~---~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i--~g~~ 92 (251)
.-.|++|++ +| |++|+.+..+|++.. +.+..++++.+.. .++.+.+ +..++|.+.+ +|+.
T Consensus 20 ~~~i~~f~~~~a~w------C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~--~~l~~~~--~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 20 PVEIVVFTDNDKEG------CQYCKETEQLLEELSEVSPKLKLEIYDFDTPED--KEEAEKY--GVERVPTTIILEEGKD 89 (215)
T ss_pred CeEEEEEcCCCCCC------CCchHHHHHHHHHHHhhCCCceEEEEecCCccc--HHHHHHc--CCCccCEEEEEeCCee
Confidence 447889988 88 999999999987753 3444566664322 3455555 5777899865 3333
Q ss_pred c----cccc-----------------------c---------ccchheeeeeeecccccCCCcchHHHHHHHHhc-----
Q psy15946 93 I----GTWQ-----------------------E---------KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH----- 131 (251)
Q Consensus 93 ~----gG~~-----------------------~---------~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~----- 131 (251)
+ .|.. + ...-.|++|+++| |++|..++.+|+..
T Consensus 90 ~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~------C~~C~~~~~~l~~l~~~~~ 163 (215)
T TIGR02187 90 GGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPT------CPYCPYAVLMAHKFALAND 163 (215)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCC------CCCcHHHHHHHHHHHHhcC
Confidence 2 1210 0 0122456688886 99999999988765
Q ss_pred CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe
Q psy15946 132 LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV 169 (251)
Q Consensus 132 ~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~ 169 (251)
.+.+..+|+..+++ +.+..+ ..++|.+++++.
T Consensus 164 ~i~~~~vD~~~~~~----~~~~~~--V~~vPtl~i~~~ 195 (215)
T TIGR02187 164 KILGEMIEANENPD----LAEKYG--VMSVPKIVINKG 195 (215)
T ss_pred ceEEEEEeCCCCHH----HHHHhC--CccCCEEEEecC
Confidence 35566677776654 444454 778999988753
No 71
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.37 E-value=3.1e-06 Score=60.53 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=57.5
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC--CeeeCChHHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE--GVHIGDADAIERLN 181 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~--g~~iGG~d~l~~l~ 181 (251)
+++|+.+ .|++|.+++.+|+.+|++|+.+++..+.....++....+ ..++|.+..+ |..+.+...+.+..
T Consensus 2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p--~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGG--KVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCC--CCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 5789988 499999999999999999999999877656777877764 6899999763 56777777766644
Q ss_pred H
Q psy15946 182 E 182 (251)
Q Consensus 182 e 182 (251)
+
T Consensus 74 ~ 74 (77)
T cd03041 74 F 74 (77)
T ss_pred H
Confidence 3
No 72
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.35 E-value=1.3e-06 Score=62.47 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=47.8
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~ 89 (251)
++||+.++ ||+|.+++.+|+.++++|+.+++..+....+++.+.. +...+|++..+
T Consensus 2 ~~Ly~~~~------sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~--p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEG------SPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKG--GKVQVPYLVDP 57 (77)
T ss_pred ceEecCCC------CchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhC--CCCcccEEEeC
Confidence 68999996 9999999999999999999999987765667887764 56789998653
No 73
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.35 E-value=1.5e-06 Score=68.99 Aligned_cols=45 Identities=27% Similarity=0.492 Sum_probs=42.6
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.++ |+.|++|+++|++++++|+++|+..++...+++.+++
T Consensus 2 i~iY~~~~------C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l 46 (131)
T PRK12559 2 VVLYTTAS------CASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL 46 (131)
T ss_pred EEEEeCCC------ChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence 89999996 9999999999999999999999999998888888886
No 74
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.35 E-value=4.3e-07 Score=69.00 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=42.6
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 77 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g 77 (251)
|+||++++ |++|++|+++|++++++|+++|+..++...++|.++++
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGNPN------CSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred CEEEECCC------CHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 58999996 99999999999999999999999998888889988874
No 75
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.29 E-value=1.1e-06 Score=66.99 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=42.0
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.++ |+.|++|+++|++++++|+++|+..++-..+++.+++
T Consensus 1 i~iy~~~~------C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l 45 (105)
T cd03035 1 ITLYGIKN------CDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWL 45 (105)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHH
Confidence 58999996 9999999999999999999999999998888888876
No 76
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.28 E-value=4.5e-06 Score=64.59 Aligned_cols=45 Identities=33% Similarity=0.612 Sum_probs=41.7
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.+. |++|++|+++|+++|++|+++|+..++...+++.+++
T Consensus 2 i~iY~~~~------C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~ 46 (115)
T cd03032 2 IKLYTSPS------CSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEIL 46 (115)
T ss_pred EEEEeCCC------CHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHH
Confidence 78999996 9999999999999999999999999988888888776
No 77
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.26 E-value=2.8e-06 Score=67.50 Aligned_cols=45 Identities=22% Similarity=0.382 Sum_probs=41.4
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.+. |+.|++|+++|++++|+|+++|+..++...+++.+++
T Consensus 2 i~iY~~~~------C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTISS------CTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeCCC------CHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 88999996 9999999999999999999999999888888887775
No 78
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.19 E-value=1e-05 Score=57.50 Aligned_cols=68 Identities=26% Similarity=0.354 Sum_probs=52.9
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC----CeeeCChHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE----GVHIGDADAIE 178 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~----g~~iGG~d~l~ 178 (251)
++.+|+.. .|++|.+++.+|+.+|++|++++++.. .+.++ +..+ ..++|.++++ |..+.+...+.
T Consensus 1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~~-~~~~--~~~vP~l~~~~~~~~~~l~eS~~I~ 69 (77)
T cd03040 1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKEI-KWSS--YKKVPILRVESGGDGQQLVDSSVII 69 (77)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCch--hHHHH-HHhC--CCccCEEEECCCCCccEEEcHHHHH
Confidence 47889988 499999999999999999999998542 34444 3443 6899999987 67787777766
Q ss_pred HHH
Q psy15946 179 RLN 181 (251)
Q Consensus 179 ~l~ 181 (251)
+..
T Consensus 70 ~yL 72 (77)
T cd03040 70 STL 72 (77)
T ss_pred HHH
Confidence 543
No 79
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.17 E-value=1.2e-05 Score=56.29 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=52.4
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERLN 181 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l~ 181 (251)
.+|+..+ |++|.+++.+|...|++|+++++...... . ..+..+ ..++|.++++ |..+++...+.+..
T Consensus 2 ~Ly~~~~------~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~--~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEH------CPFCVKARMIAGLKNIPVEQIILQNDDEA-T-PIRMIG--AKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCC------CcHhHHHHHHHHHcCCCeEEEECCCCchH-H-HHHhcC--CCccCEEEeCCCeEeehHHHHHHHH
Confidence 4788774 99999999999999999999988754322 2 234443 6789999997 88999988877654
No 80
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.17 E-value=6e-06 Score=58.66 Aligned_cols=54 Identities=28% Similarity=0.378 Sum_probs=44.0
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~ 89 (251)
+++||+.+. ||+|++++.+|+.++++|++++++. ....++. .. +...+|+++++
T Consensus 1 ~i~Ly~~~~------~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~--~~~~vP~l~~~ 54 (77)
T cd03040 1 KITLYQYKT------CPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WS--SYKKVPILRVE 54 (77)
T ss_pred CEEEEEcCC------CHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-Hh--CCCccCEEEEC
Confidence 588999996 9999999999999999999998853 3344553 33 56789999886
No 81
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.14 E-value=7.1e-06 Score=55.66 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=54.2
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
.+|+.. .|++|.+++.+|+..+++|+.+++..+.....++++..+ ..++|.++++|..+++...+.+.
T Consensus 2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNP--LGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCC--CCCCCEEEECCEEEEcHHHHHHH
Confidence 467777 499999999999999999999988755433335666664 78999999999999988776553
No 82
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.13 E-value=4e-06 Score=65.02 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=41.6
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.++ |++|++|+++|++++++|+++|+..++..++++.+++
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~ 45 (117)
T TIGR01617 1 IKVYGSPN------CTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDIL 45 (117)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence 57999996 9999999999999999999999999998888888776
No 83
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.08 E-value=3.9e-06 Score=56.99 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=48.8
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT 95 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG 95 (251)
++|+.++ ||+|.+++.+|+.++++|+.++++.+.....++++.. +..++|.+..+|..+..
T Consensus 2 ~ly~~~~------~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~~~~~~~e 62 (71)
T cd00570 2 KLYYFPG------SPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALN--PLGKVPVLEDGGLVLTE 62 (71)
T ss_pred EEEeCCC------CccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcC--CCCCCCEEEECCEEEEc
Confidence 6899996 9999999999999999999999876654333566655 57789999998765543
No 84
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.06 E-value=2.5e-05 Score=60.78 Aligned_cols=102 Identities=16% Similarity=0.276 Sum_probs=70.7
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccccchhe
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKI 104 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~~~~V 104 (251)
.|+||+.+ .|.-|++|+++|+++||+|+++|+..++-.++++.+++.
T Consensus 2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~--------------------------- 48 (117)
T COG1393 2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILS--------------------------- 48 (117)
T ss_pred eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHH---------------------------
Confidence 58999999 599999999999999999999999998888888887762
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC-CHHHHHHHHHHhCC-CCCCCceEEECC-eeeCC
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-SRETQQEFKERLGT-DVINVPQIFVEG-VHIGD 173 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~-~~~~~~el~~~~g~-~~~~vP~vfi~g-~~iGG 173 (251)
..... ++.++...+-.|.+.+++. +-...+.+..++.. .-..-|.|+-+| -.||=
T Consensus 49 ------------~~g~~--~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~~~~LikRPivv~~~~~~iG~ 106 (117)
T COG1393 49 ------------KLGDG--VEELINTRGTTYRELNLDKEDLSDEELIEALLENPSLIKRPIVVDNKKLRVGF 106 (117)
T ss_pred ------------HcCcc--HHHHHHhccchHHHcCCcccccChHHHHHHHHhChhhccCCeEEeCCceEecC
Confidence 01111 5667777777777776442 22222333333321 123448888777 56764
No 85
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.97 E-value=7.5e-06 Score=62.99 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=41.3
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|+||+++ .|++|.+++++|+++|++|+++|+..++..+++|.++.+
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence 5799999 599999999999999999999999988888888877765
No 86
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.96 E-value=2.4e-05 Score=56.71 Aligned_cols=53 Identities=23% Similarity=0.509 Sum_probs=42.8
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcC----CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g 90 (251)
+|++||+++ |+-|..|+++|+... +.++.+||+.+++ +.+..+ ..+|++.++|
T Consensus 1 ~l~l~~k~~------C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~---~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPG------CHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYG---YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SS------SHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSC---TSTSEEEETT
T ss_pred CEEEEcCCC------CChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhc---CCCCEEEEcC
Confidence 589999996 999999999999743 6689999998887 555653 4699999987
No 87
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.91 E-value=2.5e-05 Score=54.73 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=45.8
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee-ccc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVH 92 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~-g~~ 92 (251)
++|+.++ ||+|.+++.+|+.++++|+.++++.... .++++++. ...++|++..+ |..
T Consensus 2 ~ly~~~~------~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~n--p~~~vP~L~~~~g~~ 59 (71)
T cd03060 2 ILYSFRR------CPYAMRARMALLLAGITVELREVELKNK-PAEMLAAS--PKGTVPVLVLGNGTV 59 (71)
T ss_pred EEEecCC------CcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHC--CCCCCCEEEECCCcE
Confidence 6899997 9999999999999999999988876432 35677664 56789999885 544
No 88
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.91 E-value=1.5e-05 Score=61.63 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=42.0
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.+. |+.|++|+++|++++++|+++|+..++-..+++.+++
T Consensus 2 i~iy~~p~------C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l 46 (113)
T cd03033 2 IIFYEKPG------CANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF 46 (113)
T ss_pred EEEEECCC------CHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence 78999995 9999999999999999999999999988888888876
No 89
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.90 E-value=1.1e-05 Score=61.25 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=41.4
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|+||+++ +|++|.+++++|+++|++|+++|+..++...++|.++++
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 5789999 599999999999999999999999988877888888875
No 90
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.89 E-value=2.9e-05 Score=54.28 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=44.9
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee-cccccc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGT 95 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~-g~~~gG 95 (251)
++|+.++ ||+|.+++-+|..+|++|+.++++..... .. .+.. +..++|+++.+ |..+.+
T Consensus 2 ~Ly~~~~------~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~~-~~~~--~~~~vP~L~~~~~~~l~e 61 (71)
T cd03037 2 KLYIYEH------CPFCVKARMIAGLKNIPVEQIILQNDDEA-TP-IRMI--GAKQVPILEKDDGSFMAE 61 (71)
T ss_pred ceEecCC------CcHhHHHHHHHHHcCCCeEEEECCCCchH-HH-HHhc--CCCccCEEEeCCCeEeeh
Confidence 5899886 99999999999999999999988765432 22 3344 46689999886 555444
No 91
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.89 E-value=4.5e-05 Score=60.09 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=42.5
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
.|+||+.+. |.-|++|+++|+++|++|+++|+..++-..+++.+++
T Consensus 2 ~i~iY~~p~------Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l 47 (126)
T TIGR01616 2 TIIFYEKPG------CANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF 47 (126)
T ss_pred eEEEEeCCC------CHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence 588999995 9999999999999999999999999888888888876
No 92
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.88 E-value=3.1e-05 Score=55.19 Aligned_cols=55 Identities=18% Similarity=0.372 Sum_probs=42.6
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHH----cC--CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRT----HL--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV 91 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~--v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~ 91 (251)
+|++|+++| |++|..++..|++ ++ +.+..+|++.+++.. +.+ +..++|+++++|+
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~----~~~--~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPT------CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA----MEY--GIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCC------CcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH----HHc--CCccCCEEEECCE
Confidence 589999998 9999999999875 23 567788887776532 334 5677999999875
No 93
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=97.87 E-value=5e-05 Score=55.79 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=56.7
Q ss_pred cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHH
Q psy15946 100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIE 178 (251)
Q Consensus 100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~ 178 (251)
..+.+.+|+.. .|++|.+++.+|+..|++|+.++++... ..+++.+... ...+|.+.++ |..+.....+.
T Consensus 15 ~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np--~~~vPvL~~~~g~~l~eS~aI~ 85 (89)
T cd03055 15 VPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNP--QGKVPALEIDEGKVVYESLIIC 85 (89)
T ss_pred CCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCC--CCCcCEEEECCCCEEECHHHHH
Confidence 35678999988 5999999999999999999999886542 2345666654 6789999998 78887766665
Q ss_pred HH
Q psy15946 179 RL 180 (251)
Q Consensus 179 ~l 180 (251)
+.
T Consensus 86 ~y 87 (89)
T cd03055 86 EY 87 (89)
T ss_pred Hh
Confidence 54
No 94
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.83 E-value=8.5e-05 Score=51.82 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=53.1
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
+++|+.. +|++|.+++.+|+..|++|++++++... ...++++... ...+|.+..+|..+.+...+.+..
T Consensus 1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p--~~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNP--YGTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCC--CCCCCEEEECCEEEEcHHHHHHHH
Confidence 3678877 5999999999999999999998886542 2356666653 679999988888777766665543
No 95
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=97.83 E-value=5.7e-05 Score=55.48 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=48.2
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee-ccc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVH 92 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~-g~~ 92 (251)
...+++|+.+. ||+|.+++.+|+.++++|+.++++.... .+++.+.. ....+|++.++ |..
T Consensus 16 ~~~~~Ly~~~~------sp~~~kv~~~L~~~gl~~~~~~v~~~~~-~~~~~~~n--p~~~vPvL~~~~g~~ 77 (89)
T cd03055 16 PGIIRLYSMRF------CPYAQRARLVLAAKNIPHEVININLKDK-PDWFLEKN--PQGKVPALEIDEGKV 77 (89)
T ss_pred CCcEEEEeCCC------CchHHHHHHHHHHcCCCCeEEEeCCCCC-cHHHHhhC--CCCCcCEEEECCCCE
Confidence 45799999995 9999999999999999999998875432 24566654 46789999987 443
No 96
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.80 E-value=4.2e-05 Score=56.55 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=46.6
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
.-+|.+|+++| |++|..+++++++. ++.|..+|++..++. .+.+ +..++|.++++|+..
T Consensus 13 pv~i~~F~~~~------C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~----a~~~--~V~~vPt~vidG~~~ 76 (89)
T cd03026 13 PINFETYVSLS------CHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDE----VEER--GIMSVPAIFLNGELF 76 (89)
T ss_pred CEEEEEEECCC------CCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHH----HHHc--CCccCCEEEECCEEE
Confidence 34899999997 99999999998874 588899998877653 3344 567899999998654
No 97
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.80 E-value=4.6e-05 Score=58.70 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=40.0
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.+. |.-|++|+++|++++++|+++|+..++-..+++.+++
T Consensus 1 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 1 ITIYHNPR------CSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred CEEEECCC------CHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 57999995 9999999999999999999999988887777777665
No 98
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.80 E-value=5.7e-05 Score=53.97 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=41.4
Q ss_pred eEEEEeecCCCCCCCCchHHHH----HHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKV----KQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~----k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
.|.+|+ +| ||+|+.+ ++++++++++++.++|+. .+ +..+ . +..++|.++++|+.+
T Consensus 2 ~i~~~a-~~------C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-~~---~a~~-~--~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TG------CANCQMTEKNVKKAVEELGIDAEFEKVTD-MN---EILE-A--GVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CC------CcCHHHHHHHHHHHHHHcCCCeEEEEeCC-HH---HHHH-c--CCCcCCEEEECCEEE
Confidence 467777 87 9999999 667777888888888883 22 2333 3 678899999988544
No 99
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.79 E-value=3.8e-05 Score=53.63 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=43.8
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g 90 (251)
+++|+.++ ||+|.+++.+|+.+|++|++++++.... ..++++.. ...++|++..+|
T Consensus 1 ~~ly~~~~------~~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~--p~~~vP~l~~~~ 56 (73)
T cd03059 1 MTLYSGPD------DVYSHRVRIVLAEKGVSVEIIDVDPDNP-PEDLAELN--PYGTVPTLVDRD 56 (73)
T ss_pred CEEEECCC------ChhHHHHHHHHHHcCCccEEEEcCCCCC-CHHHHhhC--CCCCCCEEEECC
Confidence 37899996 9999999999999999999988875422 35666664 456899886654
No 100
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.79 E-value=3.9e-05 Score=60.83 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=41.7
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|+||+++ .|++|.+++++|+++||+|+++|+..++..+++|.++..
T Consensus 2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~ 47 (131)
T PRK01655 2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILR 47 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHH
Confidence 7899999 599999999999999999999999999888888877764
No 101
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.77 E-value=0.00011 Score=51.35 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=51.4
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIER 179 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~ 179 (251)
++|+..+ |++|.+++.+|+.+|++|+.++++... ..+++.+... ..++|.+..+ |..+.....+.+
T Consensus 2 ~ly~~~~------~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np--~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRR------CPYAMRARMALLLAGITVELREVELKN-KPAEMLAASP--KGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCC------CcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCC--CCCCCEEEECCCcEEecHHHHHH
Confidence 5788885 999999999999999999999886542 2356777654 7899999986 887766555443
No 102
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=8.7e-05 Score=52.53 Aligned_cols=60 Identities=15% Similarity=0.292 Sum_probs=47.7
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh----------CCCCCCCCceeeec
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL----------GTDVINVPQIFVEG 90 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~----------g~g~~~vP~i~i~g 90 (251)
+-++|.+.. ||+|..+++.|+++++.|+++||..+...++++..+- +.|+..+|.+.+++
T Consensus 3 kp~lfgsn~------Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d 72 (85)
T COG4545 3 KPKLFGSNL------CPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDD 72 (85)
T ss_pred Cceeecccc------CcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCC
Confidence 348888885 9999999999999999999999988877666655431 23667788887654
No 103
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.68 E-value=7e-05 Score=52.46 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=45.4
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGV 91 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~~~vP~i~i~g~ 91 (251)
+++|+.++ |++|.+++-+|+.+|++|+.++++. .....+++.+.. ....+|.+..+|.
T Consensus 1 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~--p~~~vP~l~~~~~ 60 (74)
T cd03045 1 IDLYYLPG------SPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLN--PQHTVPTLVDNGF 60 (74)
T ss_pred CEEEeCCC------CCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhC--cCCCCCEEEECCE
Confidence 36899996 9999999999999999999988764 333456777765 4567999977643
No 104
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.67 E-value=5.3e-05 Score=52.75 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=43.8
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeee
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~ 89 (251)
++|+.++ |++|.+++-+|+.++++|+.+.++... ...+++.+.. ...++|++.++
T Consensus 2 ~Ly~~~~------s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~--p~~~vP~l~~~ 58 (74)
T cd03051 2 KLYDSPT------APNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKN--PAGTVPVLELD 58 (74)
T ss_pred EEEeCCC------CcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhC--CCCCCCEEEeC
Confidence 7899996 999999999999999999988876432 2345677665 46789999874
No 105
>PRK10026 arsenate reductase; Provisional
Probab=97.67 E-value=7.2e-05 Score=60.05 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=43.7
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|.+|+||+.+. |.-|++|+++|++++++|+++|+..++-..+++..++
T Consensus 1 m~~i~iY~~p~------Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l 48 (141)
T PRK10026 1 MSNITIYHNPA------CGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI 48 (141)
T ss_pred CCEEEEEeCCC------CHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence 45799999995 9999999999999999999999999888888888876
No 106
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.63 E-value=0.0001 Score=57.16 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=41.2
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|.||+.+ +|++|.+++++|+++|++|+++|+..++..+++|.++..
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~ 46 (117)
T TIGR01617 1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS 46 (117)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence 5689888 699999999999999999999999998888888877764
No 107
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.62 E-value=0.00042 Score=50.09 Aligned_cols=53 Identities=23% Similarity=0.524 Sum_probs=43.2
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcC----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECC
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG 168 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g 168 (251)
+|++|++. .|+-|..++.+|+... +.++.+||..|++ +.+..+ ..+|.+.++|
T Consensus 1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~---~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYG---YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSC---TSTSEEEETT
T ss_pred CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhc---CCCCEEEEcC
Confidence 47899999 5999999999999654 5688999997766 666775 6899999999
No 108
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.60 E-value=0.00021 Score=49.63 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=50.1
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIER 179 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~ 179 (251)
.+|+.. .|++|.+++.+|...+++|+.++++.. .....++.+... ...+|.+.+ +|..+.....+.+
T Consensus 2 ~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 2 KLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNP--AGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred EEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCC--CCCCCEEEeCCCCEEecHHHHHH
Confidence 578877 499999999999999999998887643 233456777764 679999987 5566665555443
No 109
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.59 E-value=0.00012 Score=56.66 Aligned_cols=46 Identities=33% Similarity=0.622 Sum_probs=40.9
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|.||+.+ .|+.|.+++++|+++|++|+++|+..++..+++|.+.+.
T Consensus 2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 6799988 599999999999999999999999888777777777764
No 110
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.58 E-value=6.6e-05 Score=57.66 Aligned_cols=56 Identities=29% Similarity=0.600 Sum_probs=43.3
Q ss_pred CCCCCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCcccccccCCC
Q psy15946 195 SPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251 (251)
Q Consensus 195 ~~~~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~C~~C 251 (251)
+......|..|.|.|...|+.|+|+-.++.... .......+|+.|+-.|.+.|+.|
T Consensus 37 ~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~-g~~q~~~~C~~C~G~Gk~~C~~C 92 (111)
T PLN03165 37 KRENTQPCFPCSGTGAQVCRFCVGSGNVTVELG-GGEKEVSKCINCDGAGSLTCTTC 92 (111)
T ss_pred hhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC-CcEEEEEECCCCCCcceeeCCCC
Confidence 344678999999999999999999977652211 11224679999999999999988
No 111
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.58 E-value=0.00014 Score=50.61 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=45.8
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
+++|+.+. |++|.+++-+|+.++++|++++++.. ....+++.+.. ...++|.+..+|..
T Consensus 1 ~~Ly~~~~------~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--p~~~vP~l~~~~~~ 61 (73)
T cd03056 1 MKLYGFPL------SGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALN--PNGEVPVLELDGRV 61 (73)
T ss_pred CEEEeCCC------CccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhC--CCCCCCEEEECCEE
Confidence 36899996 99999999999999999999988642 23345666654 45679999876543
No 112
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.55 E-value=0.00023 Score=50.35 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=55.7
Q ss_pred eeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946 106 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182 (251)
Q Consensus 106 iyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e 182 (251)
+|+.. .|++|.+++-+|+.+|++|+.+++..... ..++.++.+ ..++|.+..+|..+.+...+.+..+
T Consensus 1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p--~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNP--KGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHST--TSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcc--cccceEEEECCEEEeCHHHHHHHHH
Confidence 46666 49999999999999999999999875533 677777765 7899999999999998887766543
No 113
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.54 E-value=0.0004 Score=48.54 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=52.3
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC--CHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~--~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
.+|+.. .|++|.+++.+|+..|++|+.++++. ......++.+... ...+|.+..+|..+-....+.+
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~l~es~aI~~ 70 (74)
T cd03045 2 DLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNP--QHTVPTLVDNGFVLWESHAILI 70 (74)
T ss_pred EEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCc--CCCCCEEEECCEEEEcHHHHHH
Confidence 578887 49999999999999999999988764 3334567777654 6789999888877766655554
No 114
>PHA02125 thioredoxin-like protein
Probab=97.53 E-value=0.00017 Score=51.18 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=37.8
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g 90 (251)
|++|+++| |++|+.++.+|++.. |..++|+.+.. .++.+.+ +..++|++. +|
T Consensus 2 iv~f~a~w------C~~Ck~~~~~l~~~~--~~~~~vd~~~~--~~l~~~~--~v~~~PT~~-~g 53 (75)
T PHA02125 2 IYLFGAEW------CANCKMVKPMLANVE--YTYVDVDTDEG--VELTAKH--HIRSLPTLV-NT 53 (75)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHh--heEEeeeCCCC--HHHHHHc--CCceeCeEE-CC
Confidence 89999998 999999999998654 44555554442 3455555 567899987 44
No 115
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.49 E-value=0.00048 Score=48.96 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=41.7
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHh----cC--CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRT----HL--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV 169 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~----~~--v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~ 169 (251)
.|++|++++ |++|..++.+|++ ++ +.+..+|+..+++ +.+..| ...+|.++++|+
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPT------CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAMEYG--IMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCC------CcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHHcC--CccCCEEEECCE
Confidence 478999986 9999999999864 33 5667788776654 334454 678999999997
No 116
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.49 E-value=0.00014 Score=57.68 Aligned_cols=46 Identities=26% Similarity=0.495 Sum_probs=40.8
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|+||+.+ .|+.|.+++++|+++|++|+++|+..++-..++|.+++.
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR 47 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence 7899999 599999999999999999999999888777777777753
No 117
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.49 E-value=0.00013 Score=57.88 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=39.3
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 154 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~ 154 (251)
|+||+.+ +|+.|.+++++|+++||+|+++|+..++-..++|.++.
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 6899988 59999999999999999999999988776666666665
No 118
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.45 E-value=0.00014 Score=55.43 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=40.2
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|+||+.+ +|+.|.+++++|+++|++|+++|+..++-..++|.+++.
T Consensus 1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 5789998 599999999999999999999999888777777777664
No 119
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.42 E-value=0.00075 Score=46.81 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=51.8
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
.+|+.. .|++|.+++.+|+..|++|++++++.. .....++.+... ..++|.+..+|..+.....+.+
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNP--NGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCC--CCCCCEEEECCEEEEcHHHHHH
Confidence 577777 499999999999999999999988643 234466666653 6789999999988877655544
No 120
>PRK10853 putative reductase; Provisional
Probab=97.41 E-value=0.00022 Score=55.54 Aligned_cols=45 Identities=9% Similarity=0.150 Sum_probs=41.4
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.+. |.-|++|+++|++++++|+.+|+..++-..+++.+++
T Consensus 2 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 2 VTLYGIKN------CDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred EEEEcCCC------CHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 78999995 9999999999999999999999998887788888776
No 121
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.36 E-value=0.00023 Score=54.96 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=40.8
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+||+.+. |+-|++|+++|++++++|+++|+..++-..+++.+++
T Consensus 1 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l 45 (114)
T TIGR00014 1 VTIYHNPR------CSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIF 45 (114)
T ss_pred CEEEECCC------CHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHH
Confidence 57999995 9999999999999999999999999887778887776
No 122
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.36 E-value=0.00026 Score=50.14 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=46.3
Q ss_pred EEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 28 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 28 vyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
+|+.++ ||+|++++-+|+.++++|+..++..... .+++.+.. ...++|++..+|..+
T Consensus 1 Ly~~~~------Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~--p~~~vPvL~~~g~~l 57 (75)
T PF13417_consen 1 LYGFPG------SPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLN--PKGKVPVLVDDGEVL 57 (75)
T ss_dssp EEEETT------SHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHS--TTSBSSEEEETTEEE
T ss_pred CCCcCC------ChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhc--ccccceEEEECCEEE
Confidence 688886 9999999999999999999999875543 56677765 577899998765544
No 123
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.35 E-value=0.00022 Score=55.08 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=40.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|+||+.+ .|+.|.+++++|+++|++|+++|+..++-..++|.+++.
T Consensus 2 i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 2 IIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred EEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 7899999 699999999999999999999999887766677766653
No 124
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.35 E-value=0.0023 Score=62.34 Aligned_cols=122 Identities=14% Similarity=0.208 Sum_probs=79.7
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee---ccc----
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE---GVH---- 92 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~---g~~---- 92 (251)
.+++|+.+ +|++|.+++++|++. .|.++++|...+.+..+ .+ +...+|.+.+- |..
T Consensus 369 ~l~~~~~~------~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~----~~--~v~~~P~~~i~~~~~~~~~i~ 436 (555)
T TIGR03143 369 TLLLFLDG------SNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESET----LP--KITKLPTVALLDDDGNYTGLK 436 (555)
T ss_pred EEEEEECC------CchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHh----hc--CCCcCCEEEEEeCCCcccceE
Confidence 45667776 499999999999873 36677777766655333 33 34467888763 221
Q ss_pred ----cccc-------------------cc---------ccchheeeeeeecccccCCCcchHHHHHHHH----hc-CCce
Q psy15946 93 ----IGTW-------------------QE---------KEAGKIVMYSTTMGIVRDTYHRCLKVKQILR----TH-LVKF 135 (251)
Q Consensus 93 ----~gG~-------------------~~---------~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~----~~-~v~~ 135 (251)
..|+ ++ ...-.|.+|.+. +|++|-++.+.++ .+ +|..
T Consensus 437 f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~ 510 (555)
T TIGR03143 437 FHGVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEA 510 (555)
T ss_pred EEecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceE
Confidence 0110 00 112246777777 5999998777553 33 6888
Q ss_pred eEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCee
Q psy15946 136 DDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH 170 (251)
Q Consensus 136 ~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~ 170 (251)
+.+|+...++ +.+..+ ...+|.+||||+.
T Consensus 511 ~~i~~~~~~~----~~~~~~--v~~vP~~~i~~~~ 539 (555)
T TIGR03143 511 EMIDVSHFPD----LKDEYG--IMSVPAIVVDDQQ 539 (555)
T ss_pred EEEECcccHH----HHHhCC--ceecCEEEECCEE
Confidence 8899876644 444444 7899999999963
No 125
>KOG3029|consensus
Probab=97.28 E-value=0.00042 Score=61.04 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=71.8
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccc-------
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQ------- 97 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~------- 97 (251)
++++|-.. |||+|-++|.+|+-++++|..++|+ |-.+++++ .+ ....||.+.++|+.+...+
T Consensus 90 ~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~S--sykKVPil~~~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 90 DLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WS--SYKKVPILLIRGEQMVDSSVIISLLA 158 (370)
T ss_pred eEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-cc--ccccccEEEeccceechhHHHHHHHH
Confidence 89999999 6999999999999999999987775 66667776 33 5788999999887543311
Q ss_pred ------cccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcC
Q psy15946 98 ------EKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVF 141 (251)
Q Consensus 98 ------~~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~ 141 (251)
..+.+.++-|.-.. .-+-++-+.+..++.++=+-+.|.|-.
T Consensus 159 TyLq~~~q~l~eiiq~yPa~---~~~ne~GK~v~~~~NKyflM~~e~d~~ 205 (370)
T KOG3029|consen 159 TYLQDKRQDLGEIIQMYPAT---SFFNEDGKEVNDILNKYFLMYREHDPG 205 (370)
T ss_pred HHhccCCCCHHHHHHhcccc---ccccccccchhhcchhheeeeeccCCC
Confidence 12233343333221 012345567777888877777777753
No 126
>PHA02125 thioredoxin-like protein
Probab=97.24 E-value=0.00098 Score=47.27 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=38.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV 169 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~ 169 (251)
|++|+++| |+.|..++.+|++..+ ...+|+.+. ..++.+..+ ...+|.+. +|+
T Consensus 2 iv~f~a~w------C~~Ck~~~~~l~~~~~--~~~~vd~~~--~~~l~~~~~--v~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEW------CANCKMVKPMLANVEY--TYVDVDTDE--GVELTAKHH--IRSLPTLV-NTS 54 (75)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHhh--eEEeeeCCC--CHHHHHHcC--CceeCeEE-CCE
Confidence 78899997 9999999999987544 444444332 235666665 77899876 665
No 127
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.19 E-value=0.00073 Score=49.85 Aligned_cols=58 Identities=26% Similarity=0.415 Sum_probs=44.6
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 172 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG 172 (251)
.|.+|++.+ |++|..++.++++. ++.+..+|++..++ +.+..| ...+|.++|||+.++
T Consensus 15 ~i~~F~~~~------C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~--V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLS------CHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERG--IMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCC------CCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcC--CccCCEEEECCEEEE
Confidence 477888874 99999988887665 67888889876643 444554 778999999998664
No 128
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.15 E-value=0.0016 Score=46.45 Aligned_cols=54 Identities=24% Similarity=0.317 Sum_probs=40.6
Q ss_pred eeeeeeecccccCCCcchHHH----HHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKV----KQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~----k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i 171 (251)
|.+|+ +| |+.|..+ ++++++++++++.++++... +..+ .| ..++|.+++||+.+
T Consensus 3 i~~~a-~~------C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~----~a~~-~~--v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TG------CANCQMTEKNVKKAVEELGIDAEFEKVTDMN----EILE-AG--VTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CC------CcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHH-cC--CCcCCEEEECCEEE
Confidence 56777 65 9999998 66888899988888887322 2222 34 78999999999754
No 129
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.09 E-value=0.0012 Score=46.92 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=37.0
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHH----HcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILR----THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~----~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
+|.+|+.+ |++|.++.++++ .+++.++.+|+ .+ .+++. .+ |..++|.++|||+.
T Consensus 2 ~I~v~~~~-------C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~---~~~~~-~y--gv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKVFSPG-------CPYCPELVQLLKEAAEELGIEVEIIDI-ED---FEEIE-KY--GVMSVPALVINGKV 59 (76)
T ss_dssp EEEEECSS-------CTTHHHHHHHHHHHHHHTTEEEEEEET-TT---HHHHH-HT--T-SSSSEEEETTEE
T ss_pred EEEEeCCC-------CCCcHHHHHHHHHHHHhcCCeEEEEEc-cC---HHHHH-Hc--CCCCCCEEEECCEE
Confidence 46665444 999998777555 56788877787 33 33443 34 68899999999863
No 130
>KOG4023|consensus
Probab=97.08 E-value=0.0008 Score=50.18 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=62.0
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC------CCCCCCCceeeeccccccccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHIGTWQE 98 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g------~g~~~vP~i~i~g~~~gG~~~ 98 (251)
.|.+|+++.+|++++=..=+.+..+|+.+.|.|+++||....+.+.++...+. .|....||||-++++-|+|+.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 58999999999998888888999999999999999999988887766654431 256678999999999999873
No 131
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.06 E-value=0.0036 Score=44.52 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=35.5
Q ss_pred CCcchHHHHH----HHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe--eeC
Q psy15946 117 TYHRCLKVKQ----ILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV--HIG 172 (251)
Q Consensus 117 tc~~C~~~k~----lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~--~iG 172 (251)
+|++|..+.+ ++..++++++.+|+. + .+++ ...| ..++|.++|||+ +.|
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~yg--v~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKYG--VMSVPALVINGKVVFVG 63 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHTT---SSSSEEEETTEEEEES
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHcC--CCCCCEEEECCEEEEEe
Confidence 4999996666 567788889888873 2 2334 4554 789999999998 455
No 132
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.05 E-value=0.001 Score=51.05 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=41.1
Q ss_pred CCeEEEE-eecCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946 23 AGKIVMY-STTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 23 ~~~vvvy-t~~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~ 89 (251)
...|+|| +++| |++|+.++.+|++.. +.|..+|++.+++ +.+.+ +..++|.+++-
T Consensus 22 ~~~vvv~f~a~w------C~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~----l~~~~--~v~~vPt~~i~ 82 (113)
T cd02975 22 PVDLVVFSSKEG------CQYCEVTKQLLEELSELSDKLKLEIYDFDEDKE----KAEKY--GVERVPTTIFL 82 (113)
T ss_pred CeEEEEEeCCCC------CCChHHHHHHHHHHHHhcCceEEEEEeCCcCHH----HHHHc--CCCcCCEEEEE
Confidence 3356666 6787 999999999998753 5778888887664 44555 57889999874
No 133
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=96.98 E-value=0.0029 Score=46.99 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=47.7
Q ss_pred CCeEEEEeecCCCC--CCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 23 AGKIVMYSTTMGIV--RDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 23 ~~~vvvyt~~~~~~--~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
.+.+.+|.+..++. ...||+|++++-.|+.++++|+.++|+....- +.+.++. -...+|++..+|..+
T Consensus 3 ~p~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p-~~~~~~n--P~g~vPvL~~~~~~i 72 (91)
T cd03061 3 EPEIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP-EDLKDLA--PGTQPPFLLYNGEVK 72 (91)
T ss_pred CCcEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCC-HHHHHhC--CCCCCCEEEECCEEe
Confidence 35677787765432 35899999999999999999988877643321 3466664 346799887655443
No 134
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=96.93 E-value=0.0035 Score=43.67 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=47.7
Q ss_pred ccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946 114 VRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182 (251)
Q Consensus 114 ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e 182 (251)
+...|++|.+++.+|+..|++|+.++++... .. ....+|.+.++|+.+.+...+.+..+
T Consensus 12 ~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~--p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 12 LPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RS--PTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cC--CCcccCEEEECCEEEcCHHHHHHHHh
Confidence 3346999999999999999999999987542 22 35689999999999999887766543
No 135
>KOG3029|consensus
Probab=96.87 E-value=0.0027 Score=56.09 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=60.1
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH-
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN- 181 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~- 181 (251)
++++|.-. |||+|.++|++|+-++++|..++|. +-.+++++=- +-..||.+.+.|+-.-+..-+..+.
T Consensus 90 ~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk~S---sykKVPil~~~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 90 DLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIKWS---SYKKVPILLIRGEQMVDSSVIISLLA 158 (370)
T ss_pred eEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhcccc---ccccccEEEeccceechhHHHHHHHH
Confidence 68899877 7999999999999999999988873 4455665432 2578999999887655555444433
Q ss_pred -----HcCChhhhhccCCC
Q psy15946 182 -----ESGELRRILKPYKS 195 (251)
Q Consensus 182 -----e~G~L~~~L~~~~~ 195 (251)
....|.++++..|.
T Consensus 159 TyLq~~~q~l~eiiq~yPa 177 (370)
T KOG3029|consen 159 TYLQDKRQDLGEIIQMYPA 177 (370)
T ss_pred HHhccCCCCHHHHHHhccc
Confidence 34467777777663
No 136
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.84 E-value=0.0027 Score=40.88 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=43.4
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHH-----HcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILR-----THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~-----~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g 90 (251)
+++|..+| |++|.+++..|. ..++.+..+|++...+..+... .. +...+|.+++.+
T Consensus 1 l~~~~~~~------c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPW------CPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELK-RY--GVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCC------ChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHH-hC--CCccccEEEEEe
Confidence 46777886 999999999999 5678999999988887555422 23 567799998765
No 137
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=96.81 E-value=0.0059 Score=45.32 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=50.8
Q ss_pred CCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946 116 DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182 (251)
Q Consensus 116 ~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e 182 (251)
..|++|++++-+|...|++|+..++++... -+.+.++. ....+|.+..+|..|...+.+.+..+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~n--P~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLA--PGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhC--CCCCCCEEEECCEEecCHHHHHHHHH
Confidence 469999999999999999999988865432 24466665 36789999999999988887777544
No 138
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.81 E-value=0.0055 Score=43.20 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=52.5
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
+++|... .++.|.+++-+|+.+|++|+.++++... ....++.++.. ...+|.+..+|..+.....+.+.
T Consensus 1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP--~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNP--TGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCc--CCCCCEEEECCEEEEcHHHHHHH
Confidence 3577777 4899999999999999999998875432 23456777764 78999999888887776665543
No 139
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=96.80 E-value=0.0076 Score=42.13 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=49.3
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
.+|+.. .+++|.+++-+|+..|++|+.++++.. ....++++... ....+|.+..+|..+.+...+.+.
T Consensus 2 ~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p-~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 2 KLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNP-VHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred EEEECC------CCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCC-CCCCCCEEEECCEEeehHHHHHHH
Confidence 567766 499999999999999999999887653 12234445432 126899998888877776666554
No 140
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0023 Score=45.40 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=46.6
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHH---------hCCCCCCCceEEEC-CeeeC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKER---------LGTDVINVPQIFVE-GVHIG 172 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~---------~g~~~~~vP~vfi~-g~~iG 172 (251)
-++|.+.+ ||+|..+++.|++.+|+|+++||..+- .+++.|+-+ -+.+...+|.+.++ |+.|=
T Consensus 4 p~lfgsn~------Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 4 PKLFGSNL------CPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred ceeecccc------CcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 36788885 999999999999999999999996553 333333322 11235678998765 44443
Q ss_pred ChHHHH
Q psy15946 173 DADAIE 178 (251)
Q Consensus 173 G~d~l~ 178 (251)
| ++|.
T Consensus 78 ~-~Dl~ 82 (85)
T COG4545 78 G-DDLS 82 (85)
T ss_pred e-chhh
Confidence 3 4443
No 141
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.79 E-value=0.0071 Score=42.36 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=53.2
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
+.+|+.. .+++|.+++-+|...|++|+.+.++... ...+++.+... ...+|.+..+|..+.....+.+..
T Consensus 2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P--~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNP--FGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCC--CCCCCEEEECCEEEEcHHHHHHHH
Confidence 4678777 4999999999999999999998776532 23355666653 788999988888887777666543
No 142
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0016 Score=50.59 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=39.6
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 154 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~ 154 (251)
.|.||+.+ .|.-|++++++|+++||+|+++|+..++-.+++|.++.
T Consensus 2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 47899988 69999999999999999999999987766666666665
No 143
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=96.78 E-value=0.0032 Score=44.05 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=41.6
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g 90 (251)
+.+|+.+. ||+|.+++-+|+.++++|+.++++... ...++++... ....+|.+..+|
T Consensus 1 ~~Ly~~~~------sp~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~~~p-~~~~vP~l~~~~ 57 (74)
T cd03058 1 VKLLGAWA------SPFVLRVRIALALKGVPYEYVEEDLGN-KSELLLASNP-VHKKIPVLLHNG 57 (74)
T ss_pred CEEEECCC------CchHHHHHHHHHHcCCCCEEEEeCccc-CCHHHHHhCC-CCCCCCEEEECC
Confidence 36888885 999999999999999999998776542 1244555431 136799997654
No 144
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.78 E-value=0.0035 Score=46.83 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=42.3
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHH------HH-c--CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQIL------RT-H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L------~~-~--~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
...-++.|+++| |++|++....+ .+ . ++.+..+|++.+.....++.+.+ +..++|.+++
T Consensus 11 ~k~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~--~i~~~Pti~~ 78 (104)
T cd02953 11 GKPVFVDFTADW------CVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRF--GVFGPPTYLF 78 (104)
T ss_pred CCeEEEEEEcch------hHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHc--CCCCCCEEEE
Confidence 345688899997 99999987543 11 1 56777788877665556777777 5778998865
No 145
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.75 E-value=0.0037 Score=53.39 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=43.0
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV 91 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~ 91 (251)
.-.|++|+++| |++|..++.+++.. .+.+..+|++.+++. .+.+ +..++|++++++.
T Consensus 134 pv~I~~F~a~~------C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~----~~~~--~V~~vPtl~i~~~ 195 (215)
T TIGR02187 134 PVRIEVFVTPT------CPYCPYAVLMAHKFALANDKILGEMIEANENPDL----AEKY--GVMSVPKIVINKG 195 (215)
T ss_pred CcEEEEEECCC------CCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHH----HHHh--CCccCCEEEEecC
Confidence 34677799998 99999999998874 356667787777663 3344 5778999999754
No 146
>PRK10026 arsenate reductase; Provisional
Probab=96.73 E-value=0.0019 Score=51.89 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=40.5
Q ss_pred hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
..|+||+.+ .|.-|.+++++|++++++|+++|+..++-..++|..++.
T Consensus 2 ~~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~ 49 (141)
T PRK10026 2 SNITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA 49 (141)
T ss_pred CEEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence 458899998 699999999999999999999999877666666666653
No 147
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=96.67 E-value=0.0027 Score=44.30 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=40.9
Q ss_pred CCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946 34 GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT 95 (251)
Q Consensus 34 ~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG 95 (251)
.++...||+|.+++.+|+.++++|+.++++... .. ....+|.+..+|..+.+
T Consensus 10 ~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~--p~g~vP~l~~~g~~l~e 61 (72)
T cd03054 10 FGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RS--PTGKLPFLELNGEKIAD 61 (72)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cC--CCcccCEEEECCEEEcC
Confidence 366678999999999999999999999887532 22 34579999988766544
No 148
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=96.67 E-value=0.0073 Score=41.77 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=49.6
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
.+|+.. .++.|.+++.+|+..|++|+.+.++... ....++.+... ...+|.+..+|..+.....+.+
T Consensus 2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNP--QGLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCC--CCCCCEEEECCEEEEcHHHHHH
Confidence 456555 3788999999999999999998776532 23456666653 7899999998888776655544
No 149
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.65 E-value=0.007 Score=58.37 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=41.9
Q ss_pred chheeeeeeecccccCCCcchHHHHHHHHhcCC-----ceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946 101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV-----KFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 172 (251)
Q Consensus 101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v-----~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG 172 (251)
.-.|.+|.+. +||+|-.+++.++...+ ..+.+|....++ +.+..+ ...||.+||||+.++
T Consensus 118 ~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~--v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 118 PLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALG--IQGVPAVFLNGEEFH 182 (515)
T ss_pred CeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcC--CcccCEEEECCcEEE
Confidence 3357888888 69999999998876654 344455544433 334444 679999999998654
No 150
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.64 E-value=0.0047 Score=43.31 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=43.7
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeec
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g 90 (251)
+++|+.+. |++|.+++-+|+.++++|+.+.++... ...+++.+.. ....+|.+..+|
T Consensus 2 ~~Ly~~~~------s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~--P~~~vP~l~~~g 60 (76)
T cd03053 2 LKLYGAAM------STCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARN--PFGQIPALEDGD 60 (76)
T ss_pred eEEEeCCC------ChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhC--CCCCCCEEEECC
Confidence 68999996 999999999999999999998776532 2234566654 467799987654
No 151
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.63 E-value=0.0054 Score=59.15 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=42.4
Q ss_pred chheeeeeeecccccCCCcchHHHHHHHHhcC-----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946 101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 172 (251)
Q Consensus 101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~-----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG 172 (251)
.-.|.+|.+. +||+|-.++..+++.- |..+.+|....++ +.+..+ ...||.+||||+.+.
T Consensus 117 ~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~~--v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 117 DFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEARN--IMAVPTVFLNGEEFG 181 (517)
T ss_pred CeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhcC--CcccCEEEECCcEEE
Confidence 3457888888 6999999998886654 4455566555444 444444 679999999997543
No 152
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.63 E-value=0.0025 Score=49.19 Aligned_cols=46 Identities=9% Similarity=0.180 Sum_probs=38.9
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|+||+.+ +|+-|.+++++|++++++|+++|+..++--.++|.+++.
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~ 46 (114)
T TIGR00014 1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA 46 (114)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence 5688888 699999999999999999999999877666666666653
No 153
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.63 E-value=0.0038 Score=44.02 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=44.6
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGV 91 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~ 91 (251)
+++|..+. |++|.+++-+|+.+|++|+.++++... ....++.++. ....+|.+..+|.
T Consensus 1 ~~ly~~~~------s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~in--P~g~vP~L~~~g~ 60 (73)
T cd03052 1 LVLYHWTQ------SFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLN--PTGEVPVLIHGDN 60 (73)
T ss_pred CEEecCCC------CccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhC--cCCCCCEEEECCE
Confidence 46888885 999999999999999999988775532 2235677765 4678999976554
No 154
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.62 E-value=0.012 Score=41.22 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=51.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
+++|.... ++.|.+++-+|...|++|+.+.++.+ ...+++.... ....+|.+..+|..+.+...+.+.
T Consensus 2 ~~Ly~~~~------~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~--p~~~vP~l~~~~~~l~es~aI~~y 69 (73)
T cd03076 2 YTLTYFPV------RGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKM--LFGQLPCFKDGDLTLVQSNAILRH 69 (73)
T ss_pred cEEEEeCC------cchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccC--CCCCCCEEEECCEEEEcHHHHHHH
Confidence 45676663 89999999999999999999988652 3334455543 367899999999888776666554
No 155
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.61 E-value=0.0059 Score=45.12 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=40.9
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHH------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
...-+++|+++| |+.|+.+...|++ ..+.+..+|++.+++. .+.+ +..++|.+++
T Consensus 13 ~~~vlv~f~a~~------C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~--~v~~vPt~~i 73 (97)
T cd02949 13 DRLILVLYTSPT------CGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAA--GIMGTPTVQF 73 (97)
T ss_pred CCeEEEEEECCC------ChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHC--CCeeccEEEE
Confidence 344678888897 9999999998877 3477888888877764 3344 4567898864
No 156
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.59 E-value=0.0097 Score=45.62 Aligned_cols=50 Identities=28% Similarity=0.317 Sum_probs=37.5
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcC-----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~-----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi 166 (251)
+.|+++| |++|..++.+|++.. +.+..+|++.++ ++.+..+ ..++|.+++
T Consensus 27 v~f~a~w------C~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~--v~~vPt~~i 81 (113)
T cd02975 27 VFSSKEG------CQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYG--VERVPTTIF 81 (113)
T ss_pred EEeCCCC------CCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcC--CCcCCEEEE
Confidence 3446676 999999999987654 567788887654 5666665 789999877
No 157
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.59 E-value=0.0028 Score=48.75 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=36.6
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 154 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~ 154 (251)
|+||+.+ +|.-|.+++++|++++++|+++|+..++-..++|.+++
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 5688888 69999999999999999999999976654455554444
No 158
>PRK10853 putative reductase; Provisional
Probab=96.54 E-value=0.003 Score=49.17 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=39.3
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g 155 (251)
|+||+.. .|.-|.+++++|+++|++|+++|+..++-..++|.+++.
T Consensus 2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~ 47 (118)
T PRK10853 2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID 47 (118)
T ss_pred EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence 6789988 699999999999999999999999877666666666653
No 159
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.53 E-value=0.0039 Score=47.58 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=30.0
Q ss_pred EeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946 29 YSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 29 yt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
|+.+ .|.-|++|+++|++++++|+++|+..++-..+++.+++
T Consensus 1 Y~~~------~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l 42 (110)
T PF03960_consen 1 YGNP------NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL 42 (110)
T ss_dssp EE-T------T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred CcCC------CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence 6667 49999999999999999999999999776666666654
No 160
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.53 E-value=0.0033 Score=49.50 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=37.9
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 154 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~ 154 (251)
.|+||... .|.-|.+++++|+++||+|+++|+..++-..++|.++.
T Consensus 2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l 47 (126)
T TIGR01616 2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF 47 (126)
T ss_pred eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence 36788888 69999999999999999999999977665555555554
No 161
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.42 E-value=0.012 Score=45.91 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=41.4
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccCCH-------HHHHHHHHHhC--CCCCCCCcee--e
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSR-------ETQQEFKERLG--TDVINVPQIF--V 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~d~-------~~~~el~~~~g--~g~~~vP~i~--i 88 (251)
.-|+.|+++| ||+|+.+.-.|++ ..+++..+|++.+. ....++.+..+ .+...+|.++ -
T Consensus 25 ~~iv~f~~~~------Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k 98 (122)
T TIGR01295 25 TATFFIGRKT------CPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHIT 98 (122)
T ss_pred cEEEEEECCC------ChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEe
Confidence 3578888897 9999996666554 55788899998654 12344444442 1345589885 4
Q ss_pred ecccc
Q psy15946 89 EGVHI 93 (251)
Q Consensus 89 ~g~~~ 93 (251)
+|+.+
T Consensus 99 ~Gk~v 103 (122)
T TIGR01295 99 DGKQV 103 (122)
T ss_pred CCeEE
Confidence 55544
No 162
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.42 E-value=0.013 Score=40.69 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=47.9
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
++|... .++.|.+++-+|+..|++|+.++++.......++.... ....+|.+..+|..+.....+.+
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~--p~~~vP~L~~~~~~l~es~aI~~ 68 (72)
T cd03039 2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL--PFGQLPVLEIDGKKLTQSNAILR 68 (72)
T ss_pred EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC--cCCCCCEEEECCEEEEecHHHHH
Confidence 456555 37899999999999999999998864322222344333 47899999988887776555544
No 163
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.36 E-value=0.0062 Score=42.37 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=42.0
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
++|.... ++.|.+++-+|+.+|++|+.++++.......++.+.. ....+|.+..+|..
T Consensus 2 ~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~--p~~~vP~L~~~~~~ 59 (72)
T cd03039 2 KLTYFNI------RGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL--PFGQLPVLEIDGKK 59 (72)
T ss_pred EEEEEcC------cchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC--cCCCCCEEEECCEE
Confidence 6787775 8999999999999999999988865332222344332 45778999776543
No 164
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.36 E-value=0.0054 Score=42.62 Aligned_cols=50 Identities=28% Similarity=0.659 Sum_probs=29.0
Q ss_pred ccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCcccccc----cCCC
Q psy15946 202 CQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLVK----CYAC 251 (251)
Q Consensus 202 C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~~----C~~C 251 (251)
|..|.|++. ..|+.|+|+-.++...+ +..-.....|+.|+-.|.+. |+.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C 62 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTC 62 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCC
Confidence 555666555 78888988877653322 11122467899998888774 6665
No 165
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=96.35 E-value=0.0067 Score=41.95 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=43.3
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
++|+... ++.|.+++.+|+.++++|+.+.++... ...+++.+.. ...++|++..+|..
T Consensus 2 ~L~~~~~------~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~--p~~~vP~l~~~~~~ 61 (73)
T cd03042 2 ILYSYFR------SSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALN--PQGLVPTLVIDGLV 61 (73)
T ss_pred EEecCCC------CcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhC--CCCCCCEEEECCEE
Confidence 5787775 999999999999999999998776432 2235666654 46789999776543
No 166
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.34 E-value=0.02 Score=40.74 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=50.5
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEEC---CeeeCChHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVE---GVHIGDADAIE 178 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~---g~~iGG~d~l~ 178 (251)
+.+|+.. . ++|.+++.+|+..|++|+.+.+... ....+++.+... ...+|.+..+ |..+.....+.
T Consensus 2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~g~~l~eS~aI~ 72 (81)
T cd03048 2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINP--NGRIPAIVDHNGTPLTVFESGAIL 72 (81)
T ss_pred eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCc--CCCCCEEEeCCCCceEEEcHHHHH
Confidence 4678765 4 9999999999999999988777642 334466776653 6789999887 67777666555
Q ss_pred HH
Q psy15946 179 RL 180 (251)
Q Consensus 179 ~l 180 (251)
+.
T Consensus 73 ~y 74 (81)
T cd03048 73 LY 74 (81)
T ss_pred HH
Confidence 54
No 167
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.29 E-value=0.015 Score=40.50 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=47.6
Q ss_pred eeeeeecccccCCCcchHHHHHHHHh--cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRT--HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIER 179 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~--~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~ 179 (251)
.+|+.. .+++|.+++.+|.. .+++|+.+.++.. ....++.+... ...+|.+.. +|..+.+...+.+
T Consensus 2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p--~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNP--LGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCC--CCCCCEEEECCCCEEECHHHHHh
Confidence 467666 49999999999999 8999999888642 22345555543 678999875 6777766555544
No 168
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.26 E-value=0.017 Score=48.89 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=50.6
Q ss_pred eeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE-ECCeeeCChHHHHHHHH
Q psy15946 106 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGDADAIERLNE 182 (251)
Q Consensus 106 iyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG~d~l~~l~e 182 (251)
+|+.. .||+|.+++-+|..+|++|+.+++..+.. .. ..+.. +..++|.+. .+|..+.+...+.+..+
T Consensus 2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~n--p~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMI--GAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhc--CCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 57766 49999999999999999999988855432 12 23443 367899997 78889998888777544
No 169
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.24 E-value=0.011 Score=42.14 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=42.5
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCCCCCCceeee
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~~~vP~i~i~ 89 (251)
+++|+.+ .++|.+++-+|+.++++|+.+.++. .....+++.+.. ....+|.+..+
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~--p~~~vP~l~~~ 58 (81)
T cd03048 2 ITLYTHG-------TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKIN--PNGRIPAIVDH 58 (81)
T ss_pred eEEEeCC-------CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhC--cCCCCCEEEeC
Confidence 6899987 5999999999999999998877763 233446677664 45679999765
No 170
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.19 E-value=0.015 Score=40.96 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=41.8
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHH-----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-+++|+++| |++|.++...|++ .++.|..+|++.+.+..+ .+ +...+|.+++
T Consensus 11 ~~~ll~~~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~--~v~~~P~~~~ 69 (93)
T cd02947 11 KPVVVDFWAPW------CGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAE----EY--GVRSIPTFLF 69 (93)
T ss_pred CcEEEEEECCC------ChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHH----hc--CcccccEEEE
Confidence 45688888887 9999999999988 678888888887666433 34 4566899875
No 171
>PRK10387 glutaredoxin 2; Provisional
Probab=96.14 E-value=0.022 Score=47.68 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=51.9
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE-EECCeeeCChHHHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI-FVEGVHIGDADAIERLNE 182 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v-fi~g~~iGG~d~l~~l~e 182 (251)
+.+|+.. .|++|.+++-+|+..|++|+.++++..... .. .+..+ ..++|.+ ..+|..+.+...+.+..+
T Consensus 1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p--~~~VPvL~~~~g~~l~eS~aI~~yL~ 70 (210)
T PRK10387 1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIG--QKQVPILQKDDGSYMPESLDIVHYID 70 (210)
T ss_pred CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcC--CcccceEEecCCeEecCHHHHHHHHH
Confidence 3578766 499999999999999999999988654322 22 23433 5799998 567888988887777554
Q ss_pred c
Q psy15946 183 S 183 (251)
Q Consensus 183 ~ 183 (251)
+
T Consensus 71 ~ 71 (210)
T PRK10387 71 E 71 (210)
T ss_pred H
Confidence 3
No 172
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.13 E-value=0.015 Score=40.80 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=43.1
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
+++|..+. ++.|.+++-+|+..+++|+.+.++.+ ...++++... ...++|.+..+|..
T Consensus 2 ~~Ly~~~~------~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~--p~~~vP~l~~~~~~ 59 (73)
T cd03076 2 YTLTYFPV------RGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKM--LFGQLPCFKDGDLT 59 (73)
T ss_pred cEEEEeCC------cchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccC--CCCCCCEEEECCEE
Confidence 47788775 99999999999999999999988752 2234455443 45679999776543
No 173
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.13 E-value=0.011 Score=41.18 Aligned_cols=53 Identities=8% Similarity=-0.066 Sum_probs=40.5
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHH--cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRT--HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~--~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
++|+.+. |++|.+++-+|+. ++++|+.+.++.. ....++.+.. ....+|.+..
T Consensus 2 ~Ly~~~~------s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~--p~~~vP~l~~ 56 (73)
T cd03049 2 KLLYSPT------SPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVN--PLGKIPALVL 56 (73)
T ss_pred EEecCCC------CcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhC--CCCCCCEEEE
Confidence 6888885 9999999999999 8899999888642 2224555554 4677999875
No 174
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.09 E-value=0.015 Score=49.17 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=47.0
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
.+++|+.+. |++|.+++-+|+.+|++|+.+.|+... ..++++++. -...||++..+|..
T Consensus 10 ~~~Ly~~~~------s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~~~~n--P~g~VPvL~~~g~~ 68 (211)
T PRK09481 10 VMTLFSGPT------DIYSHQVRIVLAEKGVSVEIEQVEKDN-LPQDLIDLN--PYQSVPTLVDRELT 68 (211)
T ss_pred eeEEeCCCC------ChhHHHHHHHHHHCCCCCEEEeCCccc-CCHHHHHhC--CCCCCCEEEECCEE
Confidence 589999986 999999999999999999998887532 235677664 45679999876644
No 175
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.75 E-value=0.034 Score=35.50 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=41.3
Q ss_pred eeeeeeecccccCCCcchHHHHHHHH-----hcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILR-----THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG 168 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~-----~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g 168 (251)
+++|..++ |++|.+++..|. ..++.+..+|+....+..+.+. .. ....+|.+++.+
T Consensus 1 l~~~~~~~------c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPW------CPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELK-RY--GVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCC------ChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHH-hC--CCccccEEEEEe
Confidence 35566664 999999999999 6678899999887776555422 22 367899988765
No 176
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.64 E-value=0.16 Score=44.02 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=24.9
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc---CCcccee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---LVKFDDK 60 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---~v~~~e~ 60 (251)
....|++||-+. ||||+++.+.|.+. +|.+..+
T Consensus 107 ~k~~I~vFtDp~------CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 107 EKHVITVFTDIT------CGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCEEEEEEECCC------ChHHHHHHHHHHHHhcCCeEEEEE
Confidence 345799999995 99999998888874 3544443
No 177
>PRK10387 glutaredoxin 2; Provisional
Probab=95.63 E-value=0.023 Score=47.63 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=42.6
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCcee-eeccccc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIG 94 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~g 94 (251)
+++|+.+. ||+|.+++-+|+.+|++|+.++++.... ... .+.. +..++|++. .+|..+.
T Consensus 1 ~~Ly~~~~------sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~-~~~~--p~~~VPvL~~~~g~~l~ 60 (210)
T PRK10387 1 MKLYIYDH------CPFCVKARMIFGLKNIPVELIVLANDDE-ATP-IRMI--GQKQVPILQKDDGSYMP 60 (210)
T ss_pred CEEEeCCC------CchHHHHHHHHHHcCCCeEEEEcCCCch-hhH-HHhc--CCcccceEEecCCeEec
Confidence 36898885 9999999999999999999988865432 222 2333 456899995 4554443
No 178
>PHA02278 thioredoxin-like protein
Probab=95.63 E-value=0.035 Score=42.02 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=40.5
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
...-|+-|+++| |++|+.+...|++. .+++..+|++.+.....++.+.+ +..++|++.+
T Consensus 14 ~~~vvV~F~A~W------CgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~--~I~~iPT~i~ 78 (103)
T PHA02278 14 KKDVIVMITQDN------CGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLF--DIMSTPVLIG 78 (103)
T ss_pred CCcEEEEEECCC------CHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHC--CCccccEEEE
Confidence 345677888887 99999998877653 24577778887632233455555 5677898853
No 179
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.56 E-value=0.034 Score=42.99 Aligned_cols=58 Identities=10% Similarity=0.251 Sum_probs=42.0
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----C-CccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----L-VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI 93 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~-v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~ 93 (251)
.-|+-|+++| |++|+.+...|++. + +.|..+|++.+++ +.+.+ +..++|++. -+|+.+
T Consensus 16 ~vVV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~--~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 16 VVVIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMY--ELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHc--CCCCCCEEEEEECCEEE
Confidence 3567799998 99999998888763 2 4677888888876 44555 466799884 455554
No 180
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=95.55 E-value=0.022 Score=48.20 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=42.6
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCcee-eecccccc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGT 95 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~gG 95 (251)
++|+... ||+|.+++-+|+.+|++|+.+++..+.. .. ..+.. ...++|++. .+|..+.+
T Consensus 1 ~Ly~~~~------sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~n--p~g~vP~l~~~~g~~l~e 60 (209)
T TIGR02182 1 KLYIYDH------CPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMI--GAKQVPILQKDDGRAMPE 60 (209)
T ss_pred CeecCCC------CChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhc--CCCCcceEEeeCCeEecc
Confidence 3688775 9999999999999999999988765432 12 23343 456799997 55555444
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.55 E-value=0.024 Score=54.74 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=43.1
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
.-.|.+|.++ +||||..|++.+.+.. |..+.+|....++ +.+.. +..+||.++++|+..
T Consensus 118 ~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~--~v~~VP~~~i~~~~~ 181 (515)
T TIGR03140 118 PLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEAL--GIQGVPAVFLNGEEF 181 (515)
T ss_pred CeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhc--CCcccCEEEECCcEE
Confidence 3479999999 5999999999988753 4445555554444 44444 567899999999764
No 182
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=95.53 E-value=0.029 Score=39.35 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=42.7
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeec
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g 90 (251)
+++|+.+. +++|++++-+|+..+++|+.+.++... ...+++.+.. ....+|.+..+|
T Consensus 1 ~~ly~~~~------s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~--p~~~vP~L~~~~ 59 (76)
T cd03050 1 LKLYYDLM------SQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKIN--PFGKVPAIVDGD 59 (76)
T ss_pred CEEeeCCC------ChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhC--cCCCCCEEEECC
Confidence 36888885 999999999999999999988776422 2234566654 467799997654
No 183
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=95.51 E-value=0.04 Score=39.52 Aligned_cols=66 Identities=24% Similarity=0.216 Sum_probs=47.8
Q ss_pred ccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHHHH
Q psy15946 114 VRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERLNE 182 (251)
Q Consensus 114 ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l~e 182 (251)
.+..+++|.+++.+|...+++|+.+.++... ....++ ... ....+|.+..+ |..+.+...+.+..+
T Consensus 12 ~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~--p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 12 VRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSG--GFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCC--CCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 3456899999999999999999988775432 222333 333 36789999888 888888777766543
No 184
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=95.51 E-value=0.03 Score=39.33 Aligned_cols=58 Identities=26% Similarity=0.273 Sum_probs=41.6
Q ss_pred EEEEeecC-CCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 26 IVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 26 vvvyt~~~-~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
+++|..+. .+.+..+|+|.+++.+|+..+++|+.++++.. +.. ....+|++..+|+.+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~--p~g~vPvl~~~g~~l 60 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRS--PKGKLPFIELNGEKI 60 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCC--CCCCCCEEEECCEEE
Confidence 46666652 23444689999999999999999998877631 232 456789998776543
No 185
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=95.47 E-value=0.024 Score=39.42 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=47.7
Q ss_pred CcchHHHHHHHHhcCCceeEEEcCC---CHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHHHH
Q psy15946 118 YHRCLKVKQILRTHLVKFDDKDVFM---SRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERLNE 182 (251)
Q Consensus 118 c~~C~~~k~lL~~~~v~~~e~dv~~---~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l~e 182 (251)
||++.+++-+|+.+|++|+..-+.. ......++.++.+ ..++|.+.. +|+.+.+...+.+..+
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p--~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNP--RGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHST--T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCc--CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 8999999999999999998776632 2222367788875 789999998 7899998887776544
No 186
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=95.43 E-value=0.021 Score=40.96 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=39.7
Q ss_pred EEEeecCC-CCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeee
Q psy15946 27 VMYSTTMG-IVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 27 vvyt~~~~-~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~ 89 (251)
++|+.+++ +.+..+++|.+++-+|..++++|+.+.++... ....++ +.. ....+|++..+
T Consensus 2 ~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~--p~~~vP~L~~~ 64 (84)
T cd03038 2 TLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSG--GFYTVPVIVDG 64 (84)
T ss_pred eeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCC--CCceeCeEEEC
Confidence 44544322 24567999999999999999999988765332 212233 222 45678999765
No 187
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.40 E-value=0.031 Score=39.20 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=42.8
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH-HHHHHHHHhCCCCCCCCceeee
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE-TQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~-~~~el~~~~g~g~~~vP~i~i~ 89 (251)
++|+.+. |++|.+++-+|+.++++|+.++++...+ ..++++++. ....+|++..+
T Consensus 2 ~Ly~~~~------~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~n--P~~~vP~L~~~ 57 (75)
T cd03044 2 TLYTYPG------NPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKF--PLGKVPAFEGA 57 (75)
T ss_pred eEecCCC------CccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhC--CCCCCCEEEcC
Confidence 4788775 9999999999999999999988876432 235566664 46789999874
No 188
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.39 E-value=0.027 Score=54.87 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=44.6
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHH----c-CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----H-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~-~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
-.|.+|.+++ ||+|.++.+.++. + +|..+.+|+...++. .+.. +..+||.++|||+.
T Consensus 478 ~~i~v~~~~~------C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~----~~~~--~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 478 VNIKIGVSLS------CTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDL----KDEY--GIMSVPAIVVDDQQ 539 (555)
T ss_pred eEEEEEECCC------CCCcHHHHHHHHHHHHhCCCceEEEEECcccHHH----HHhC--CceecCEEEECCEE
Confidence 3689998885 9999998887665 4 688888888887763 3334 57789999999854
No 189
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=95.36 E-value=0.027 Score=42.91 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=27.7
Q ss_pred CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946 117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 154 (251)
Q Consensus 117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~ 154 (251)
+|.-|.+++++|+++|++|+++|+..++--+++|.+++
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l 42 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL 42 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence 69999999999999999999999988766666665554
No 190
>PRK14300 chaperone protein DnaJ; Provisional
Probab=95.34 E-value=0.013 Score=54.31 Aligned_cols=51 Identities=25% Similarity=0.685 Sum_probs=37.3
Q ss_pred CccccccCCcc------eeeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|++ ...|+.|+|+-+++...++.. ....|+.|+-.|-+ +|+.|
T Consensus 145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~--~~~~C~~C~G~G~~~~~~C~~C 204 (372)
T PRK14300 145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFT--IEQACHKCQGNGQIIKNPCKKC 204 (372)
T ss_pred ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEE--EEEeCCCCCccceEeCCCCCCC
Confidence 56888999877 478999999977764433321 35689999988855 68777
No 191
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.28 E-value=0.05 Score=40.44 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=37.7
Q ss_pred eeeeeeecccccCCCcchHHHHHHH------Hh-c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQIL------RT-H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL------~~-~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi 166 (251)
++.|+++| |++|..+...+ .+ + ++.+..+|++.+.....++.+..+ ..++|.+++
T Consensus 15 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~--i~~~Pti~~ 78 (104)
T cd02953 15 FVDFTADW------CVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG--VFGPPTYLF 78 (104)
T ss_pred EEEEEcch------hHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC--CCCCCEEEE
Confidence 45677776 99999877443 11 1 566777888766555567777776 788998643
No 192
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.014 Score=53.89 Aligned_cols=54 Identities=24% Similarity=0.537 Sum_probs=40.7
Q ss_pred CCccccccCCc------ceeeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 198 ACTICQVCGGY------RLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 198 ~~~~C~~Cgg~------~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
....|..|.|+ .-..|+.|||+-.+....+...-.....|+.||-.|-+ +|+.|
T Consensus 141 ~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C 203 (371)
T COG0484 141 RSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKC 203 (371)
T ss_pred eeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCC
Confidence 46799999999 67899999999766433322111247899999999987 59888
No 193
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.26 E-value=0.12 Score=40.48 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCceeEEEc-CCCHHHHHHHHHHh----CCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 122 LKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL----GTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 122 ~~~k~lL~~~~v~~~e~dv-~~~~~~~~el~~~~----g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
..+..++.+.|++...++- ..+.+..+.+++-. ..+...+|.++|+|+.+-|++....|.
T Consensus 86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHHH
Confidence 3567778888886543321 12233333332221 123778999999999999887665553
No 194
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=95.22 E-value=0.081 Score=37.07 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=44.6
Q ss_pred CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
.+++|.+++.+|+..|++|+.++++.. ... ....+|.+..+|+.+.+...+.+..
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~--p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFGGLA--------KRS--PKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeecCcc--------cCC--CCCCCCEEEECCEEEcCHHHHHHHH
Confidence 479999999999999999998887541 232 3678999999999998888776644
No 195
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.20 E-value=0.032 Score=53.83 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=44.2
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
.-.|.+|.++ +||||..|.+.+.+. .|..+.+|....++ +.+.+ +..+||.++++|+.+
T Consensus 117 ~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~--~v~~VP~~~i~~~~~ 180 (517)
T PRK15317 117 DFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEAR--NIMAVPTVFLNGEEF 180 (517)
T ss_pred CeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhc--CCcccCEEEECCcEE
Confidence 4479999999 499999999998774 35566666666665 44444 567899999999754
No 196
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.19 E-value=0.28 Score=41.06 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHH--cCCccceeec
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT--HLVKFDDKDV 62 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~--~~v~~~e~dv 62 (251)
....|++|+-+. ||+|+++.+.|.. .++.+..+.+
T Consensus 77 ~~~~i~~f~D~~------Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 77 GKRVVYVFTDPD------CPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCEEEEEEECCC------CccHHHHHHHHhhccCceEEEEEEc
Confidence 456899999995 9999999999974 4555555544
No 197
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.11 E-value=0.073 Score=37.33 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=39.4
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh-----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCe
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV 169 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~-----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~ 169 (251)
+++|++++ |+.|..+...|++ .++.+..+|.+.+.+..+ ..+ ...+|.+++ +|+
T Consensus 14 ll~~~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~--v~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPW------CGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAE----EYG--VRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCC------ChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHH----hcC--cccccEEEEEECCE
Confidence 45566664 9999999999877 778888889887655433 333 567899765 676
No 198
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.11 E-value=0.073 Score=39.81 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=40.0
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-|+.|.++| |+.|+.....|++. .+.|..+|++.+++. .++.+.+ +...+|++++
T Consensus 16 k~vvv~F~a~w------C~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~--~V~~~Pt~~~ 77 (103)
T cd02985 16 RLVVLEFALKH------SGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRRE--KIIEVPHFLF 77 (103)
T ss_pred CEEEEEEECCC------CHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHc--CCCcCCEEEE
Confidence 34678888897 99999988887763 466777787766532 3455555 5677898754
No 199
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=95.08 E-value=0.12 Score=36.11 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=49.2
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
.+|... ..+.|.+++-+|+..|++|+.+.++.. +....++.+.. ....+|.+..+|..+-....+.+.
T Consensus 2 ~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~--p~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 2 KLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKIN--PFGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred EEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhC--cCCCCCEEEECCEEEEcHHHHHHH
Confidence 467766 488999999999999999998877542 22234566664 378999998888777665555443
No 200
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.05 E-value=0.063 Score=46.78 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=49.3
Q ss_pred eEEEEeecCCCCC--CCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946 25 KIVMYSTTMGIVR--DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 94 (251)
Q Consensus 25 ~vvvyt~~~~~~~--~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g 94 (251)
.|.+|.+.++..+ ..||+|++++-.|..+|++|+.+.|+.... -+++.++. ....+|++..+|..+.
T Consensus 2 ~~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~in--P~g~vPvL~~~g~~l~ 70 (236)
T TIGR00862 2 EIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLA--PGTHPPFLTYNTEVKT 70 (236)
T ss_pred ceEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHC--cCCCCCEEEECCEEee
Confidence 4677877754433 489999999999999999998888765432 35677664 3567999987665543
No 201
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.02 E-value=0.1 Score=36.49 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=48.8
Q ss_pred eeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHH
Q psy15946 106 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERL 180 (251)
Q Consensus 106 iyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l 180 (251)
+|+.. .++.+.+++-+|+..|++|+.++++... ....+++++. ....+|.+..+ |..+-....+.+.
T Consensus 3 Ly~~~------~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~n--P~~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 3 LYTYP------GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKF--PLGKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred EecCC------CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhC--CCCCCCEEEcCCCCEEeeHHHHHHH
Confidence 56555 4899999999999999999999887643 2235566665 47899999885 7667655544443
No 202
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=95.01 E-value=0.11 Score=36.11 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=45.5
Q ss_pred cchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 119 HRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 119 ~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
+.+.+++-+|+..|++|+.+.++.. .....++.+.. ....+|.+..+|..+.....+.+..
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~--p~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAIN--PLGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcC--CCCCCCEEEECCEEEEcHHHHHHHH
Confidence 4678999999999999998877643 22345566554 3779999999998888777666643
No 203
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=95.00 E-value=0.054 Score=37.64 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=42.9
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGV 91 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~ 91 (251)
++|..++ .+++.+++-+|+.++++|+.++++... ...+++.++. ....+|.+..+|.
T Consensus 2 ~l~~~~~------s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~n--P~~~vP~L~~~~~ 60 (73)
T cd03047 2 TIWGRRS------SINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMN--PNGRVPVLEDGDF 60 (73)
T ss_pred EEEecCC------CcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhC--CCCCCCEEEECCE
Confidence 5788885 899999999999999999988775422 2345666654 4567999976653
No 204
>PRK10767 chaperone protein DnaJ; Provisional
Probab=94.99 E-value=0.02 Score=53.03 Aligned_cols=51 Identities=27% Similarity=0.680 Sum_probs=35.1
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...++.. ...+|+.|+-.|.+ +|+.|
T Consensus 142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~--~~~~C~~C~G~G~~~~~~C~~C 201 (371)
T PRK10767 142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFT--VQQTCPTCHGRGKIIKDPCKKC 201 (371)
T ss_pred cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEE--EEEeCCCCCCceeECCCCCCCC
Confidence 567888888774 47888988876654333221 34688888888865 67776
No 205
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.94 E-value=0.12 Score=37.68 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=38.8
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-|+.|.++| |++|+.++..|.+. ++.|-.+|.+.+.+ +.+.+ +...+|.+++
T Consensus 18 ~~vvv~f~~~~------C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~ 77 (103)
T PF00085_consen 18 KPVVVYFYAPW------CPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKY--GVKSVPTIIF 77 (103)
T ss_dssp SEEEEEEESTT------SHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHT--TCSSSSEEEE
T ss_pred CCEEEEEeCCC------CCccccccceecccccccccccccchhhhhccch----hhhcc--CCCCCCEEEE
Confidence 45677788887 99999999888763 36666777776644 44455 4677899853
No 206
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.94 E-value=0.13 Score=36.02 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=48.2
Q ss_pred ccCCCcchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 114 VRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 114 ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
-+..++++.+++-+|+..|++|+.+.++... +...++.+.. ....+|.+..+|..+.....+.+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFS--PTGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhC--CCCcCCEEEECCEEEEcHHHHHH
Confidence 3456889999999999999999998776432 2335666665 47899999999887776665544
No 207
>PRK15113 glutathione S-transferase; Provisional
Probab=94.92 E-value=0.058 Score=45.65 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=46.5
Q ss_pred CeEEEEeec-CCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 24 GKIVMYSTT-MGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 24 ~~vvvyt~~-~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
+.+++|+.+ + .+++|.+++-+|+.+|++|+.+.++.. .....++.++. -...||++..+|..
T Consensus 4 ~~~~Ly~~~~~-----~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~VP~L~~~~~~ 68 (214)
T PRK15113 4 PAITLYSDAHF-----FSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYS--LTRRVPTLQHDDFE 68 (214)
T ss_pred CeEEEEeCCCC-----CCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcC--CCCCCCEEEECCEE
Confidence 468999975 2 399999999999999999998877643 22335677664 45679999877644
No 208
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.89 E-value=0.049 Score=38.16 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=42.1
Q ss_pred CCCCCCCchHHHHHHHHHHcCCccceeeccCCH-HHHHHHHHHhCCCCCCCCceeeecc
Q psy15946 34 GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGV 91 (251)
Q Consensus 34 ~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~-~~~~el~~~~g~g~~~vP~i~i~g~ 91 (251)
.+.++.++++.+++-+|+.++++|+.+.++... +...++++.. ....+|.+..+|.
T Consensus 4 ~~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~n--P~g~vP~L~~~g~ 60 (73)
T cd03043 4 IGNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFS--PTGKVPVLVDGGI 60 (73)
T ss_pred EcCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhC--CCCcCCEEEECCE
Confidence 466778999999999999999999988776533 2235566654 4677999977654
No 209
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=94.79 E-value=0.096 Score=40.08 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=41.3
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eeccc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVH 92 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~ 92 (251)
..-|+.|.++| |+.|+.+...|++. ++.|..+|++..++ +.+.+ +..++|.+. -+|+.
T Consensus 23 ~~vvV~f~a~~------c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~--~v~~vPt~l~fk~G~~ 87 (113)
T cd02989 23 ERVVCHFYHPE------FFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKL--NIKVLPTVILFKNGKT 87 (113)
T ss_pred CcEEEEEECCC------CccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHC--CCccCCEEEEEECCEE
Confidence 34667777787 99999999888762 47788888888776 44444 456788884 45543
No 210
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.74 E-value=0.14 Score=39.83 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=39.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHH----HhcCCceeEEEcCCCH-------HHHHHHHHHhC--CCCCCCceE--EECC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSR-------ETQQEFKERLG--TDVINVPQI--FVEG 168 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL----~~~~v~~~e~dv~~~~-------~~~~el~~~~g--~~~~~vP~v--fi~g 168 (251)
|+.|+.+| ||+|+.+.-+| ++.++++..+|++.+. +...++.+..+ .+...+|.+ |-+|
T Consensus 27 iv~f~~~~------Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G 100 (122)
T TIGR01295 27 TFFIGRKT------CPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG 100 (122)
T ss_pred EEEEECCC------ChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence 56677775 99999855544 5556788899997543 12234444433 123458985 5678
Q ss_pred eeeC
Q psy15946 169 VHIG 172 (251)
Q Consensus 169 ~~iG 172 (251)
+.++
T Consensus 101 k~v~ 104 (122)
T TIGR01295 101 KQVS 104 (122)
T ss_pred eEEE
Confidence 6543
No 211
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=94.69 E-value=0.085 Score=39.51 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=35.9
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc---------CCccceeeccCCHH----------------HHHHHHHHh
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRE----------------TQQEFKERL 76 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---------~v~~~e~dv~~d~~----------------~~~el~~~~ 76 (251)
..+.|++|+.+| ||+|+++.+.+... ++.+..+++..+.. ...++...+
T Consensus 5 ~k~~v~~F~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (112)
T PF13098_consen 5 GKPIVVVFTDPW------CPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY 78 (112)
T ss_dssp SSEEEEEEE-TT-------HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT
T ss_pred CCEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc
Confidence 455789999997 99999987776631 24455556654432 124455556
Q ss_pred CCCCCCCCceeee
Q psy15946 77 GTDVINVPQIFVE 89 (251)
Q Consensus 77 g~g~~~vP~i~i~ 89 (251)
+...+|.+++-
T Consensus 79 --~v~gtPt~~~~ 89 (112)
T PF13098_consen 79 --GVNGTPTIVFL 89 (112)
T ss_dssp --T--SSSEEEEC
T ss_pred --CCCccCEEEEE
Confidence 56778999753
No 212
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=94.63 E-value=0.16 Score=44.29 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946 116 DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182 (251)
Q Consensus 116 ~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e 182 (251)
..|++|.+++-+|...|++|+.+.++.... .+++.++. ....+|.+..+|..|.....+.+..+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~in--P~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLA--PGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHC--cCCCCCEEEECCEEeecHHHHHHHHH
Confidence 469999999999999999999988866532 35677765 36789999889999988888777655
No 213
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=94.62 E-value=0.16 Score=35.52 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=42.8
Q ss_pred chHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHH
Q psy15946 120 RCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERL 180 (251)
Q Consensus 120 ~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l 180 (251)
.+.+++.+|...|++|+.++++... ....++.+... ...+|.+..+ |..+.....+.+.
T Consensus 10 ~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np--~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 10 CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINP--KGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCC--CCCCCEEEECCCcEEEcHHHHHHH
Confidence 4778999999999999988775432 23466777654 7899999887 7766665555543
No 214
>PHA02278 thioredoxin-like protein
Probab=94.58 E-value=0.12 Score=39.00 Aligned_cols=60 Identities=12% Similarity=0.245 Sum_probs=40.8
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i 171 (251)
|+-|+++| |+.|+.+..+|++. .+++..+|++.++....++.+..+ ..++|.+ |-+|+.+
T Consensus 18 vV~F~A~W------CgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~--I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDN------CGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD--IMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCC------CHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC--CccccEEEEEECCEEE
Confidence 45567776 99999888777543 245777888765332445666665 7788984 5578754
No 215
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=94.56 E-value=0.13 Score=43.35 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=53.4
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
.+.+|+.. .|++|.+++-+|+..|++|+.+.++.. ....++.++. ....||.+..+|..+-....+.+
T Consensus 10 ~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~n--P~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 10 VMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLN--PYQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred eeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhC--CCCCCCEEEECCEEeeCHHHHHH
Confidence 47789877 499999999999999999999988653 2234666665 46799999999887776666655
No 216
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.071 Score=47.70 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=50.5
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCce--eeeccccc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG 94 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i--~i~g~~~g 94 (251)
.+-+|.|.+|| |+.|++....|++.- +..-.+|++.++. +...+ |..++|.+ |++|+.+.
T Consensus 44 ~PVlV~fWap~------~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~----vAaqf--giqsIPtV~af~dGqpVd 111 (304)
T COG3118 44 VPVLVDFWAPW------CGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM----VAAQF--GVQSIPTVYAFKDGQPVD 111 (304)
T ss_pred CCeEEEecCCC------CchHHHHHHHHHHHHHHhCCceEEEEecCCcchh----HHHHh--CcCcCCeEEEeeCCcCcc
Confidence 35688889998 999999999999852 4556777777777 56677 58889988 58999998
Q ss_pred ccc
Q psy15946 95 TWQ 97 (251)
Q Consensus 95 G~~ 97 (251)
||.
T Consensus 112 gF~ 114 (304)
T COG3118 112 GFQ 114 (304)
T ss_pred ccC
Confidence 876
No 217
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=94.50 E-value=0.21 Score=34.57 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=48.5
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
.+|... ..+.+.+++-+|+..|++|+.++++.. ....+++.+.. ....+|.+..+|..+.....+.+
T Consensus 2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~n--P~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMN--PNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhC--CCCCCCEEEECCEEEECHHHHHH
Confidence 466655 377889999999999999998877542 22345666665 36799999888877766555443
No 218
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=94.49 E-value=0.12 Score=38.03 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=38.9
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~~i 171 (251)
+++|.++| |+.|..+...|++ ..+.+..+|++.+++ +.+..+ ...+|.++ -+|+.+
T Consensus 17 lv~f~a~~------C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~----l~~~~~--v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPT------CGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE----IAEAAG--IMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCC--CeeccEEEEEECCeEE
Confidence 45666675 9999999888866 347788888877754 444554 67889854 366544
No 219
>PRK14285 chaperone protein DnaJ; Provisional
Probab=94.47 E-value=0.035 Score=51.44 Aligned_cols=51 Identities=29% Similarity=0.724 Sum_probs=32.8
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...++. .....|+.|+-.|-+ +|+.|
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C 205 (365)
T PRK14285 146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFF--RVTTTCPKCYGNGKIISNPCKSC 205 (365)
T ss_pred cccCCCCCCcccCCCCCCccCCCccCceeEEecCcee--EEeeecCCCCCcccccCCCCCCC
Confidence 467888888774 5688888887664322221 135678888777754 56666
No 220
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=94.38 E-value=0.095 Score=38.14 Aligned_cols=53 Identities=8% Similarity=0.145 Sum_probs=37.4
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
.-++.|.++| |+.|+.+...|++. .+.+..+|++.+++ +.+.+ +..++|.+++
T Consensus 14 ~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~--~i~~~Pt~~~ 72 (96)
T cd02956 14 PVVVDFWAPR------SPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQF--GVQALPTVYL 72 (96)
T ss_pred eEEEEEECCC------ChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHc--CCCCCCEEEE
Confidence 4678888887 99999998887753 24456667776655 44445 4677899864
No 221
>PTZ00051 thioredoxin; Provisional
Probab=94.35 E-value=0.11 Score=37.90 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=37.1
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
.-++.|..+| |+.|+++...|++. ++.|..+|++.... +.+.+ +...+|.+.+
T Consensus 20 ~vli~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~ 77 (98)
T PTZ00051 20 LVIVDFYAEW------CGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKE--NITSMPTFKV 77 (98)
T ss_pred eEEEEEECCC------CHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHC--CCceeeEEEE
Confidence 4577788887 99999998888763 46677777765544 44444 4567888754
No 222
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=94.31 E-value=0.11 Score=39.51 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=39.3
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI 93 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~ 93 (251)
.-|+.|.++| |+.|+.+...|++. ++.|..+|++.+ ++.+.+ +..++|.+. -+|+.+
T Consensus 26 ~vvv~F~a~~------c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~--~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 26 RVVVHFYEPG------FPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYL--DIKVLPTLLVYKNGELI 89 (113)
T ss_pred EEEEEEeCCC------CCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhc--CCCcCCEEEEEECCEEE
Confidence 4567788897 99999999888763 355666666544 455555 567789884 455543
No 223
>PRK14298 chaperone protein DnaJ; Provisional
Probab=94.15 E-value=0.048 Score=50.76 Aligned_cols=53 Identities=23% Similarity=0.580 Sum_probs=34.3
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...+. .--.....|+.|+-.|-+ +|+.|
T Consensus 141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 204 (377)
T PRK14298 141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVC 204 (377)
T ss_pred eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCC
Confidence 567888888775 678999988766432211 111135678888888743 57766
No 224
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=94.07 E-value=0.13 Score=37.12 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=38.3
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
.-++.|.++| |++|+.+...|++. .+.|..+|.+.+.+ +.+.+ +...+|.+++
T Consensus 16 ~vvi~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~P~~~~ 74 (101)
T TIGR01068 16 PVLVDFWAPW------CGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKY--GIRSIPTLLL 74 (101)
T ss_pred cEEEEEECCC------CHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHc--CCCcCCEEEE
Confidence 4677777886 99999998777652 36777778777665 34445 5677998865
No 225
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=94.03 E-value=0.11 Score=36.45 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=39.7
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeee
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~ 89 (251)
++|+.+. + .+.+++-+|+.++++|+.++++... ...+++.++. ....+|++..+
T Consensus 2 ~Ly~~~~------~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n--p~~~vP~l~~~ 57 (77)
T cd03057 2 KLYYSPG------A-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAIN--PKGQVPALVLD 57 (77)
T ss_pred EEEeCCC------C-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhC--CCCCCCEEEEC
Confidence 5787773 4 4789999999999999988776533 2245667665 46789999775
No 226
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.02 E-value=0.11 Score=40.04 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=37.3
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHH---------HcCCccceeeccCCHH---------HHHHHHHHhCCCCCCCC
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILR---------THLVKFDDKDVFMSRE---------TQQEFKERLGTDVINVP 84 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~---------~~~v~~~e~dv~~d~~---------~~~el~~~~g~g~~~vP 84 (251)
..-++.|+++| |++|++....+. +.++.+..+|++.+.. ...++...+ +...+|
T Consensus 15 k~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~--~v~~~P 86 (125)
T cd02951 15 KPLLLLFSQPG------CPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY--RVRFTP 86 (125)
T ss_pred CcEEEEEeCCC------CHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc--CCcccc
Confidence 45788899997 999999875442 1235556667665421 124555555 467789
Q ss_pred ceee
Q psy15946 85 QIFV 88 (251)
Q Consensus 85 ~i~i 88 (251)
.+++
T Consensus 87 t~~~ 90 (125)
T cd02951 87 TVIF 90 (125)
T ss_pred EEEE
Confidence 9754
No 227
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.01 E-value=0.15 Score=37.53 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=38.1
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-++.|.++| |+.|+++...+++. .+.+-.+|++.++. +.+.+ +...+|.+++
T Consensus 19 ~~~~v~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~ 78 (101)
T cd03003 19 EIWFVNFYSPR------CSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQ--GVNSYPSLYV 78 (101)
T ss_pred CeEEEEEECCC------ChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHc--CCCccCEEEE
Confidence 44678888997 99999998887663 24566778777655 33344 4567898854
No 228
>PRK14284 chaperone protein DnaJ; Provisional
Probab=93.96 E-value=0.05 Score=50.86 Aligned_cols=51 Identities=31% Similarity=0.696 Sum_probs=31.3
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...++. .....|+.|+-.|-+ +|+.|
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C 217 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFF--SMASTCPECGGEGRVITDPCSVC 217 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceE--EEEEECCCCCCCCcccCCcCCCC
Confidence 467777777664 4588888886654322221 134577777777754 46666
No 229
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=93.91 E-value=0.16 Score=36.90 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=37.0
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-++.|.++| |+.|+++...|++. .+.+..+|++..++ +.+.+ +...+|.+++
T Consensus 15 ~~v~v~f~~~~------C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~--~i~~~Pt~~~ 74 (97)
T cd02984 15 KLLVLHFWAPW------AEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKF--EITAVPTFVF 74 (97)
T ss_pred CEEEEEEECCC------CHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhc--CCccccEEEE
Confidence 44678888887 99999998888762 35566666665544 44445 4567897753
No 230
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=93.91 E-value=0.17 Score=37.86 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=38.4
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-++.|.++| |++|++....+++. .+.|-.+|.+.+++ +.+.+ +..++|.+++
T Consensus 19 ~~vlv~F~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~--~v~~~Ptl~~ 84 (108)
T cd02996 19 ELVLVNFYADW------CRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRY--RINKYPTLKL 84 (108)
T ss_pred CEEEEEEECCC------CHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhC--CCCcCCEEEE
Confidence 34678889998 99999998877532 25566677776654 55555 5678998853
No 231
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.81 E-value=0.18 Score=37.03 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=38.4
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
.-++.|.++| |++|+++...|++. ++.+..+|.+.+++ +.+.+ +..++|.+++
T Consensus 18 ~~lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~--~i~~~Pt~~~ 77 (101)
T cd02994 18 EWMIEFYAPW------CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRF--FVTALPTIYH 77 (101)
T ss_pred CEEEEEECCC------CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHc--CCcccCEEEE
Confidence 3688899998 99999988887653 35667777776665 33344 4677899976
No 232
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=93.79 E-value=0.21 Score=37.82 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=37.4
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHH-------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT-------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-+|.|.++| |+.|+.....+++ .++.+..+|++.++. +...+ +..++|.+++
T Consensus 25 ~~vlV~F~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~--~V~~~Pt~~i 85 (111)
T cd02963 25 KPYLIKITSDW------CFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKL--GAHSVPAIVG 85 (111)
T ss_pred CeEEEEEECCc------cHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHc--CCccCCEEEE
Confidence 45788899998 9999887766543 246667777776655 33444 5678998863
No 233
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=93.78 E-value=0.079 Score=36.71 Aligned_cols=39 Identities=26% Similarity=0.669 Sum_probs=27.0
Q ss_pred CCCccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccc
Q psy15946 197 DACTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVG 244 (251)
Q Consensus 197 ~~~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cneng 244 (251)
.....|..|+|.+.+ +|+.|+|+-+++ . ..+|+.|+-+|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~--------~~~C~~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E--------KDPCKTCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T--------SSB-SSSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C--------CCCCCCCCCcC
Confidence 456789999999876 799999998874 1 35899998664
No 234
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.77 E-value=0.19 Score=37.20 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=37.6
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
.-++.|.++| |+.|+.+...+++. .+.+..+|.+.+++ +.+.+ +...+|.+++
T Consensus 21 ~v~v~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~i~~~Pt~~~ 79 (104)
T cd03004 21 PWLVDFYAPW------CGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQA--NIRAYPTIRL 79 (104)
T ss_pred eEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHc--CCCcccEEEE
Confidence 5678888997 99999987777652 25667777776554 44444 5677898853
No 235
>PRK14282 chaperone protein DnaJ; Provisional
Probab=93.76 E-value=0.062 Score=49.83 Aligned_cols=53 Identities=25% Similarity=0.700 Sum_probs=33.0
Q ss_pred CccccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...+ +.--.....|+.|+-.|.+ +|+.|
T Consensus 152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 215 (369)
T PRK14282 152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHEC 215 (369)
T ss_pred cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCC
Confidence 467888888764 57888888876642211 1101125688888887754 56666
No 236
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=93.74 E-value=0.17 Score=36.20 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=36.2
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHH----c----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----H----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
.-+++|+++| |++|+++...+++ . .+.+..+|.+.+. ++.+.+ +...+|.+++
T Consensus 17 ~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~--~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPW------CGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEY--GVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCC------CHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhC--CCCCCCEEEE
Confidence 6788999997 9999999888765 2 2444555555433 345555 4677898853
No 237
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=93.65 E-value=0.13 Score=39.60 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=37.5
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHH------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..+-++.|+++| |++|+.....+.+ ....|..+|++.+.+...+..... ...+|.+++
T Consensus 19 ~kpVlV~F~a~W------C~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~---g~~vPt~~f 82 (117)
T cd02959 19 GKPLMLLIHKTW------CGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPD---GGYIPRILF 82 (117)
T ss_pred CCcEEEEEeCCc------CHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccC---CCccceEEE
Confidence 345677788998 9999999888776 234677788887654332211121 124888853
No 238
>PRK14287 chaperone protein DnaJ; Provisional
Probab=93.64 E-value=0.062 Score=49.87 Aligned_cols=53 Identities=28% Similarity=0.632 Sum_probs=35.0
Q ss_pred CccccccCCcc------eeeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+ ...|+.|+|+-.++...+ +.--.....|+.|+-.|.+ +|+.|
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 201 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATC 201 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCC
Confidence 56788888877 467999999976643221 1000124689999988865 57776
No 239
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.60 E-value=0.18 Score=36.60 Aligned_cols=55 Identities=13% Similarity=0.223 Sum_probs=37.7
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
....|++|+++| |+.|++....|++. .+.+..+|.+.+++ +.+.+ +...+|.+++
T Consensus 13 ~~~~~i~f~~~~------C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~--~i~~~P~~~~ 75 (102)
T TIGR01126 13 NKDVLVEFYAPW------CGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRF--GVSGFPTIKF 75 (102)
T ss_pred CCcEEEEEECCC------CHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhC--CCCcCCEEEE
Confidence 455799999998 99999877766552 25556666665544 44455 4677998854
No 240
>PRK14294 chaperone protein DnaJ; Provisional
Probab=93.59 E-value=0.061 Score=49.82 Aligned_cols=51 Identities=27% Similarity=0.687 Sum_probs=31.8
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...++. .....|+.|+-.|-+ +|+.|
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C 203 (366)
T PRK14294 144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFF--SIRTTCPRCRGMGKVIVSPCKTC 203 (366)
T ss_pred cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeE--EEEeeCCCCCCcCeecCcCCCCC
Confidence 457778877764 4688888886654322221 135677777777754 56665
No 241
>PRK14289 chaperone protein DnaJ; Provisional
Probab=93.55 E-value=0.064 Score=50.00 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=35.2
Q ss_pred CccccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...+ +.--.....|+.|+-.|-+ +|+.|
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 217 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKC 217 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCC
Confidence 567888888775 67999999976653221 0111135788888888854 67776
No 242
>PRK14301 chaperone protein DnaJ; Provisional
Probab=93.55 E-value=0.057 Score=50.15 Aligned_cols=51 Identities=31% Similarity=0.685 Sum_probs=30.5
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++....+. .....|+.|+-.|-+ +|+.|
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C 203 (373)
T PRK14301 144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFF--QIAVPCPVCRGEGRVITHPCPKC 203 (373)
T ss_pred cccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeE--EEEEeCCCCCceeeecCCCCCCC
Confidence 456777777764 4577777776654322221 125677777766643 56665
No 243
>PRK14286 chaperone protein DnaJ; Provisional
Probab=93.43 E-value=0.063 Score=49.88 Aligned_cols=51 Identities=31% Similarity=0.634 Sum_probs=31.2
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...++. .....|+.|+-.|.+ +|+.|
T Consensus 150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C 209 (372)
T PRK14286 150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFF--SVATTCPTCRGKGTVISNPCKTC 209 (372)
T ss_pred cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceE--EEEEeCCCCCceeeEecccCCCC
Confidence 467888888774 5688888886654322221 134577777776643 56665
No 244
>PRK14288 chaperone protein DnaJ; Provisional
Probab=93.29 E-value=0.077 Score=49.24 Aligned_cols=50 Identities=32% Similarity=0.753 Sum_probs=26.8
Q ss_pred ccccccCCcce-----eeCCCCCCCceeeecccccccccceeCCCCCcccc---cccCCC
Q psy15946 200 TICQVCGGYRL-----LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGL---VKCYAC 251 (251)
Q Consensus 200 ~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl---~~C~~C 251 (251)
..|..|.|.+. ..|+.|+|+-.+.....+. .....|+.|+-.|. .+|+.|
T Consensus 141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~--~~~~~C~~C~G~G~~~~~~C~~C 198 (369)
T PRK14288 141 SVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFM--SFAQTCGACQGKGKIIKTPCQAC 198 (369)
T ss_pred ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceE--EEEEecCCCCCCceEccccCccC
Confidence 46667766663 4577777765554332221 12346666666663 345554
No 245
>PRK14290 chaperone protein DnaJ; Provisional
Probab=93.15 E-value=0.083 Score=48.90 Aligned_cols=53 Identities=25% Similarity=0.620 Sum_probs=31.8
Q ss_pred CccccccCCcce-----eeCCCCCCCceeeeccc--ccccccceeCCCCCccc---ccccCCC
Q psy15946 199 CTICQVCGGYRL-----LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVG---LVKCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cneng---l~~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.+...-. +.......+|+.|+-.| ..+|+.|
T Consensus 149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C 211 (365)
T PRK14290 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRC 211 (365)
T ss_pred cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCC
Confidence 467888888775 56888888865432111 10001135788888777 3467766
No 246
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=93.15 E-value=0.16 Score=35.22 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=39.3
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGV 91 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~ 91 (251)
++|+.+ -+.+.+++-+|+..+++|+.+.++.. .....++.+.. ....+|.+..+|.
T Consensus 2 ~l~~~~-------~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~--p~~~vP~l~~~g~ 59 (76)
T cd03046 2 TLYHLP-------RSRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAIN--PLGKVPVLVDGDL 59 (76)
T ss_pred EEEeCC-------CCChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcC--CCCCCCEEEECCE
Confidence 567665 25688999999999999998877643 22235566554 4577999976543
No 247
>PRK14293 chaperone protein DnaJ; Provisional
Probab=93.11 E-value=0.083 Score=49.06 Aligned_cols=53 Identities=26% Similarity=0.610 Sum_probs=34.9
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...+. ..-....+|+.|+-.|-+ +|+.|
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 206 (374)
T PRK14293 143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDAC 206 (374)
T ss_pred cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCC
Confidence 567888888765 469999999766532211 100124688888888866 67766
No 248
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.03 E-value=0.34 Score=40.50 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=27.3
Q ss_pred CeEEEEeecCCCCCCCCchHHHH----HHHHHHcCCccceeeccCC
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKV----KQILRTHLVKFDDKDVFMS 65 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~----k~~L~~~~v~~~e~dv~~d 65 (251)
-+|++|..+| ||+|++. +++-+++++.+.-+.++.+
T Consensus 71 ~~lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 71 WKVVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred ceEEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 3599999998 9999997 5666667877766666543
No 249
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=93.01 E-value=0.29 Score=35.78 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=35.9
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
-++.|.++| |+.|++....|.+. .+.+..+|.+.+++ +.+.+ +...+|.+++
T Consensus 21 vlv~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~--~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPW------CGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQY--GVRGFPTIKV 78 (103)
T ss_pred EEEEEECCC------CHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHC--CCCccCEEEE
Confidence 577888887 99999998777652 35566677766554 44455 4677998854
No 250
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=92.99 E-value=0.33 Score=37.52 Aligned_cols=57 Identities=12% Similarity=0.300 Sum_probs=40.7
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG 172 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iG 172 (251)
|+-|+.+| |+.|..+..+|++.- +.|..+|++.+++ +.+..+ ...+|.+ |-+|+.++
T Consensus 18 VV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~--V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYE--LYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcC--CCCCCEEEEEECCEEEE
Confidence 45588887 999998888774432 4577888887754 555555 6789984 56787654
No 251
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=92.97 E-value=0.36 Score=36.82 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=39.8
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh-----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG 172 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~-----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iG 172 (251)
|+.|+++| |+.|..+...|++ .++++..+|++..++ +.+..+ ...+|.+ |-+|+.++
T Consensus 26 vV~f~a~~------c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~--v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPE------FFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLN--IKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCC------CccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCC--CccCCEEEEEECCEEEE
Confidence 45566665 9999988887755 247788888877654 445554 6788884 66887554
No 252
>KOG0406|consensus
Probab=92.96 E-value=0.27 Score=42.62 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=46.9
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 94 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g 94 (251)
+.|.||+.-. ||+-++++-.|+.++|+|+.++++... --+-+.+... -...+|++.-+|+.+.
T Consensus 8 ~~vrL~~~w~------sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np-~hkKVPvL~Hn~k~i~ 70 (231)
T KOG0406|consen 8 GTVKLLGMWF------SPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNP-VHKKVPVLEHNGKPIC 70 (231)
T ss_pred CeEEEEEeec------ChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhcc-ccccCCEEEECCceeh
Confidence 6899999985 999999999999999999888776542 1122333321 2356999999998854
No 253
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=92.96 E-value=0.21 Score=40.55 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=40.6
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI 93 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~ 93 (251)
-|+.|.++| |+.|+.+...|++. ++.+-.+|++.+++..+++.-....+...+|+++ -+|+.+
T Consensus 50 vvV~Fya~w------C~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 50 WLVEFFTTW------SPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence 488899998 99999998777642 3677888998888654443211000123478774 555543
No 254
>PRK14283 chaperone protein DnaJ; Provisional
Probab=92.94 E-value=0.094 Score=48.77 Aligned_cols=53 Identities=25% Similarity=0.662 Sum_probs=34.7
Q ss_pred CccccccCCcc------eeeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.| ...|+.|+|+..++..... .--....+|+.|+-.|.. +|..|
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 209 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNC 209 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCC
Confidence 46788888865 4579999999776532211 111124688888888865 67776
No 255
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=92.92 E-value=0.35 Score=35.98 Aligned_cols=54 Identities=9% Similarity=0.162 Sum_probs=36.7
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeecc-CCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVF-MSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~-~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-++.|.++| |++|+.....|++. ++.+-.+|.+ ..+ ++.+.+ +..++|++++
T Consensus 19 ~~vlV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~--~V~~~PT~~l 78 (100)
T cd02999 19 DYTAVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRY--GVVGFPTILL 78 (100)
T ss_pred CEEEEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhc--CCeecCEEEE
Confidence 44688899998 99999998887763 3445555554 333 344555 4677898864
No 256
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=92.92 E-value=0.17 Score=43.13 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=35.7
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcC-----------Ccc----ceeeccCCHHH--HH-HHHHHhCCCCCCCCcee
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHL-----------VKF----DDKDVFMSRET--QQ-EFKERLGTDVINVPQIF 87 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----------v~~----~e~dv~~d~~~--~~-el~~~~g~g~~~vP~i~ 87 (251)
|.|||..+ |+.|-.|-++|.++. |+| --.|-..++++ |+ .+.+.+|.+..-.|+++
T Consensus 2 VELFTSQG------CsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQG------CSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-TT-------TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCCC------CCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 78999997 999999999999842 222 12344445543 22 34445554556679999
Q ss_pred eeccc-ccccc
Q psy15946 88 VEGVH-IGTWQ 97 (251)
Q Consensus 88 i~g~~-~gG~~ 97 (251)
|||+. ..|.+
T Consensus 76 VnG~~~~~g~~ 86 (202)
T PF06764_consen 76 VNGREHRVGSD 86 (202)
T ss_dssp ETTTEEEETT-
T ss_pred ECCeeeeeccC
Confidence 99965 45544
No 257
>PRK10996 thioredoxin 2; Provisional
Probab=92.86 E-value=0.36 Score=38.23 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=38.0
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-++.|+++| |++|++....|.+. .+.+..+|++.+++ +.+.+ +...+|.+++
T Consensus 53 k~vvv~F~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~--~V~~~Ptlii 112 (139)
T PRK10996 53 LPVVIDFWAPW------CGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARF--RIRSIPTIMI 112 (139)
T ss_pred CeEEEEEECCC------CHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhc--CCCccCEEEE
Confidence 34688888887 99999987776652 35566677777665 34444 4677898865
No 258
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=92.85 E-value=0.56 Score=34.52 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=29.5
Q ss_pred hcCCceeEEEcCCCHH--HHHHHHHHhCCCCCCCceEEECCeeeC-ChHHHHHH
Q psy15946 130 THLVKFDDKDVFMSRE--TQQEFKERLGTDVINVPQIFVEGVHIG-DADAIERL 180 (251)
Q Consensus 130 ~~~v~~~e~dv~~~~~--~~~el~~~~g~~~~~vP~vfi~g~~iG-G~d~l~~l 180 (251)
+....|.++|+...++ ..+++.++.-...--.|.|.|+|+.|| |.-.|+..
T Consensus 35 ~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EGnp~LK~I 88 (93)
T PF07315_consen 35 DQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEGNPQLKDI 88 (93)
T ss_dssp TS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEESS--HHHH
T ss_pred CCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecCCccHHHH
Confidence 3445688999976543 344444443234677899999999998 54454443
No 259
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=92.82 E-value=0.18 Score=39.23 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=37.7
Q ss_pred CeEEEEee-------cCCCCCCCCchHHHHHHHHHH----c--CCccceeeccCCHHHH---HHHHHHhCCCCC-CCCce
Q psy15946 24 GKIVMYST-------TMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQ---QEFKERLGTDVI-NVPQI 86 (251)
Q Consensus 24 ~~vvvyt~-------~~~~~~~~C~~C~~~k~~L~~----~--~v~~~e~dv~~d~~~~---~el~~~~g~g~~-~vP~i 86 (251)
.-|+.|.+ +| |++|+.+.-.|++ . ++.|..+|++..+... .++.... +.. .+|.+
T Consensus 23 ~vvV~F~A~~~~~~~~W------C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~--~I~~~iPT~ 94 (119)
T cd02952 23 PIFILFYGDKDPDGQSW------CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP--KLTTGVPTL 94 (119)
T ss_pred eEEEEEEccCCCCCCCC------CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc--CcccCCCEE
Confidence 45777888 88 9999988766654 2 3678888887754222 3444433 344 78988
Q ss_pred ee
Q psy15946 87 FV 88 (251)
Q Consensus 87 ~i 88 (251)
++
T Consensus 95 ~~ 96 (119)
T cd02952 95 LR 96 (119)
T ss_pred EE
Confidence 64
No 260
>PRK14279 chaperone protein DnaJ; Provisional
Probab=92.74 E-value=0.091 Score=49.15 Aligned_cols=51 Identities=25% Similarity=0.550 Sum_probs=29.6
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|++. ..|+.|+|+-.++....+- .....|+.|+-.|.+ +|+.|
T Consensus 173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~--~~~~~C~~C~G~G~~i~~~C~~C 232 (392)
T PRK14279 173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAF--GFSEPCTDCRGTGSIIEDPCEEC 232 (392)
T ss_pred cccCCCCccccccCCCCCCCCCCCcceEEEEEEecce--EEEEecCCCCceeEEeCCcCCCC
Confidence 467777777775 4577777776554222111 134667777766643 45555
No 261
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=92.73 E-value=0.34 Score=36.02 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=35.3
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc----C---CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH----L---VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~---v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-|+.|.++| |++|+.....|+.. + +.+..+|++ +++ +.+.+ +...+|.+++
T Consensus 18 ~~vvv~F~a~w------C~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~--~v~~~Pt~~~ 77 (102)
T cd02948 18 GLTVVDVYQEW------CGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRY--RGKCEPTFLF 77 (102)
T ss_pred CeEEEEEECCc------CHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHc--CCCcCcEEEE
Confidence 44678888997 99999988887653 2 345566666 333 33444 5677897754
No 262
>PRK14297 chaperone protein DnaJ; Provisional
Probab=92.73 E-value=0.1 Score=48.51 Aligned_cols=53 Identities=23% Similarity=0.570 Sum_probs=33.3
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++...+. .--....+|+.|+-.|.+ +|+.|
T Consensus 148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 211 (380)
T PRK14297 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKC 211 (380)
T ss_pred eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCC
Confidence 567888888774 568888888765422111 000135688888877754 57666
No 263
>PRK14295 chaperone protein DnaJ; Provisional
Probab=92.72 E-value=0.088 Score=49.19 Aligned_cols=51 Identities=24% Similarity=0.604 Sum_probs=32.6
Q ss_pred CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++..... -....+|+.|+-.|.+ +|+.|
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~--~~~~~~C~~C~G~G~~~~~~C~~C 225 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGG--FSLSEPCPDCKGRGLIADDPCLVC 225 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecc--eEEEEecCCCcceeEEeccCCCCC
Confidence 467888887774 568888888665432211 0135678888877755 46666
No 264
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=92.72 E-value=0.11 Score=47.90 Aligned_cols=53 Identities=21% Similarity=0.506 Sum_probs=32.1
Q ss_pred CccccccCCcc------eeeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+ ...|+.|+|+-.++...+. .--....+|+.|+-.|.+ +|+.|
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 206 (354)
T TIGR02349 143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTC 206 (354)
T ss_pred CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCC
Confidence 46788888877 4568888888665422210 000124578888777754 47666
No 265
>PRK14280 chaperone protein DnaJ; Provisional
Probab=92.69 E-value=0.11 Score=48.40 Aligned_cols=53 Identities=26% Similarity=0.573 Sum_probs=31.7
Q ss_pred CccccccCCcc------eeeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+ ...|+.|+|+-.++...+. .--.....|+.|+-.|.+ +|+.|
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 206 (376)
T PRK14280 143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTC 206 (376)
T ss_pred eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCC
Confidence 46788888876 3568888888665432211 000124577777777753 46666
No 266
>PRK09381 trxA thioredoxin; Provisional
Probab=92.68 E-value=0.41 Score=35.66 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=38.9
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHH----c--CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~--~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
...-|+.|.++| |+.|+.+...|++ + .+.+..+|++.++.. .+.+ +..++|.+++
T Consensus 21 ~~~vvv~f~~~~------C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~--~v~~~Pt~~~ 81 (109)
T PRK09381 21 DGAILVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKY--GIRGIPTLLL 81 (109)
T ss_pred CCeEEEEEECCC------CHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhC--CCCcCCEEEE
Confidence 345778888887 9999999877764 2 256677788777653 3344 4677998865
No 267
>KOG0910|consensus
Probab=92.59 E-value=0.21 Score=40.38 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=44.6
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI 93 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~ 93 (251)
..+-+|-|.++| |..|+.+.-.|++. .+.+.-+|++.+++..++ + +..++|+++ -||+..
T Consensus 61 ~~PVlVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~----Y--~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 61 DVPVLVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAED----Y--EISAVPTVLVFKNGEKV 128 (150)
T ss_pred CCCEEEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhh----c--ceeeeeEEEEEECCEEe
Confidence 456789999998 99999999998874 256777888888885433 3 356688884 556543
No 268
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=92.58 E-value=0.093 Score=32.16 Aligned_cols=32 Identities=13% Similarity=0.481 Sum_probs=24.1
Q ss_pred eeeCCCCCCCceeeecccccccccceeCCCCCc
Q psy15946 210 LLPCSLCNGSKKSVHRNHFTTELVALKCMNCDE 242 (251)
Q Consensus 210 ~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cne 242 (251)
.+-||.|+..-++- ++......+.+||+.|.+
T Consensus 2 ~i~CP~C~~~f~v~-~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVP-DDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcC-HHHcccCCcEEECCCCCc
Confidence 36799999998873 333445677999999976
No 269
>PRK14291 chaperone protein DnaJ; Provisional
Probab=92.53 E-value=0.1 Score=48.58 Aligned_cols=51 Identities=29% Similarity=0.737 Sum_probs=35.0
Q ss_pred CccccccCCcc------eeeCCCCCCCceeeecccccccccceeCCCCCccccc--ccCCC
Q psy15946 199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV--KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~--~C~~C 251 (251)
...|..|.|.+ ...|+.|+|+-.++....+. .....|+.|+-.|.+ +|+.|
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~--~~~~~C~~C~G~G~~~~~C~~C 214 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFF--RISQTCPTCGGEGVLREPCSKC 214 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecceE--EEEecCCCCCCceEEccCCCCC
Confidence 56788888877 46799999997765433221 135688888888844 56666
No 270
>PRK14278 chaperone protein DnaJ; Provisional
Probab=92.49 E-value=0.13 Score=47.96 Aligned_cols=53 Identities=25% Similarity=0.657 Sum_probs=29.3
Q ss_pred CccccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.++.... +.--.....|+.|+-.|-+ +|+.|
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 202 (378)
T PRK14278 139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHEC 202 (378)
T ss_pred eccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCC
Confidence 456777777663 46777887765432111 0000124567777766643 46665
No 271
>PRK14296 chaperone protein DnaJ; Provisional
Probab=92.43 E-value=0.12 Score=48.10 Aligned_cols=53 Identities=26% Similarity=0.587 Sum_probs=32.0
Q ss_pred CccccccCCcce------eeCCCCCCCceeeeccccc--ccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFT--TELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~--~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|++. ..|+.|+|+-.++..-++. .-.....|+.|+-.|-+ +|+.|
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C 212 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNC 212 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCC
Confidence 467888888775 4688888886654221110 00123577777777754 46666
No 272
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=92.37 E-value=0.39 Score=37.37 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=38.2
Q ss_pred CCeEEEEeecCCCCCCCCch--HH----------HHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHR--CL----------KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~--C~----------~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
...|++|..+| +|+. |+ .+.++|+..++.+..+|++.+++. .+.+ +..++|++.+
T Consensus 27 ~~~vvv~f~a~-----wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~L----a~~~--~I~~iPTl~l 93 (120)
T cd03065 27 DVLCLLYHEPV-----ESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKV----AKKL--GLDEEDSIYV 93 (120)
T ss_pred CceEEEEECCC-----cCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHH----HHHc--CCccccEEEE
Confidence 33566666666 5876 97 345566667899999999988774 4445 4667898853
No 273
>PRK14276 chaperone protein DnaJ; Provisional
Probab=92.36 E-value=0.12 Score=48.03 Aligned_cols=53 Identities=23% Similarity=0.562 Sum_probs=31.4
Q ss_pred CccccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|+|. ..|+.|+|+-.++...+ +.--.....|+.|+-.|-+ +|+.|
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 209 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTC 209 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCC
Confidence 567888888774 56888888866542211 0000124577777777643 46665
No 274
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=92.31 E-value=0.37 Score=35.13 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=35.5
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccC-CHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFM-SRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~-d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
.-++.|+++| |+.|++....++.. .+.+..+|.+. ++. +.+.+ +...+|.+++
T Consensus 20 ~~~v~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~--~i~~~P~~~~ 81 (105)
T cd02998 20 DVLVEFYAPW------CGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKY--GVSGFPTLKF 81 (105)
T ss_pred cEEEEEECCC------CHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhC--CCCCcCEEEE
Confidence 5688889997 99999887777652 24455566666 443 34444 4567898864
No 275
>PRK14296 chaperone protein DnaJ; Provisional
Probab=92.19 E-value=0.14 Score=47.63 Aligned_cols=38 Identities=37% Similarity=0.807 Sum_probs=30.8
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.|.+ +|+.|+|..++. ..+|+.|+-.|.+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 218 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII----------KNKCKNCKGKGKY 218 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee----------cccccCCCCceEE
Confidence 4679999999864 799999998873 2469999988865
No 276
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=92.16 E-value=0.48 Score=35.90 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=39.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeCC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIGD 173 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iGG 173 (251)
|+.|+++| |+.|..+...|++. ++.|..+|++.+ ++.+..+ ...+|.+ |-+|+.++-
T Consensus 28 vv~F~a~~------c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~--i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPG------FPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLD--IKVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCC------CCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcC--CCcCCEEEEEECCEEEEE
Confidence 44566675 99999888877542 456666776533 5666665 6789984 678887653
No 277
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=92.06 E-value=0.11 Score=36.11 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=35.6
Q ss_pred CchHHHHHHHHHHcCCccceeeccC--CHHH-HHHHHHHhCCCCCCCCceee-ecc
Q psy15946 40 YHRCLKVKQILRTHLVKFDDKDVFM--SRET-QQEFKERLGTDVINVPQIFV-EGV 91 (251)
Q Consensus 40 C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~-~~el~~~~g~g~~~vP~i~i-~g~ 91 (251)
||++.+++-+|+.+|++|+..-+.. +... ..++.++. +..+||.+.. +|+
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~--p~~~VP~L~~~~g~ 55 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALN--PRGKVPVLVDPDGT 55 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHS--TT-SSSEEEETTTE
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccC--cCeEEEEEEECCCC
Confidence 9999999999999999998766632 2222 25677776 5678999987 444
No 278
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=92.02 E-value=0.31 Score=35.54 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=35.6
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc---------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
.-++.|.++| |+.|+.....|++. .+.+..+|.+.++. +.+.+ +...+|.+++
T Consensus 18 ~~lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~ 79 (102)
T cd03005 18 NHFVKFFAPW------CGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEF--QVRGYPTLLL 79 (102)
T ss_pred CEEEEEECCC------CHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhc--CCCcCCEEEE
Confidence 4788889998 99999887666542 34556666666554 33344 4677898754
No 279
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=91.99 E-value=0.48 Score=35.58 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=37.6
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
...-++.|.++| |++|+++...|.+. ++.+-.+|++.+.. .-..+.+ +...+|.+++
T Consensus 21 ~k~vlv~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~--~~~~~~~--~v~~~Pti~~ 84 (109)
T cd02993 21 NQSTLVVLYAPW------CPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQR--EFAKEEL--QLKSFPTILF 84 (109)
T ss_pred CCCEEEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECCccch--hhHHhhc--CCCcCCEEEE
Confidence 356889999998 99999998887763 34556666665211 1122334 4677898853
No 280
>PRK14292 chaperone protein DnaJ; Provisional
Probab=91.95 E-value=0.15 Score=47.33 Aligned_cols=53 Identities=26% Similarity=0.610 Sum_probs=32.7
Q ss_pred CccccccCCcc-------eeeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYR-------LLPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~-------~~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+ ...|+.|+|+-.+..... +.---....|+.|+-.|.. +|+.|
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 203 (371)
T PRK14292 139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVC 203 (371)
T ss_pred eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCC
Confidence 46788888876 456888888865531110 0000014578888888855 67766
No 281
>PRK14285 chaperone protein DnaJ; Provisional
Probab=91.90 E-value=0.16 Score=47.05 Aligned_cols=39 Identities=31% Similarity=0.767 Sum_probs=31.3
Q ss_pred CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946 199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK 247 (251)
Q Consensus 199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~ 247 (251)
...|..|+|.|.+ +|+.|+|..++. .-+|+.|+-.|.++
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 212 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII----------SNPCKSCKGKGSLK 212 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc----------CCCCCCCCCCCEEe
Confidence 4679999998854 899999998873 24799999988753
No 282
>KOG0406|consensus
Probab=91.89 E-value=0.63 Score=40.39 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=55.2
Q ss_pred hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
+.|.||+.- .||+-.+++-.|+..||+|+.++++... --+-|.+.. -.+..+|.+..||+.|...-.+.+..
T Consensus 8 ~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~n-p~hkKVPvL~Hn~k~i~ESliiveYi 79 (231)
T KOG0406|consen 8 GTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKN-PVHKKVPVLEHNGKPICESLIIVEYI 79 (231)
T ss_pred CeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhc-cccccCCEEEECCceehhhHHHHHHH
Confidence 668899877 5999999999999999999988776542 123344443 14678999999999987666555544
Q ss_pred Hc
Q psy15946 182 ES 183 (251)
Q Consensus 182 e~ 183 (251)
++
T Consensus 80 De 81 (231)
T KOG0406|consen 80 DE 81 (231)
T ss_pred Hh
Confidence 43
No 283
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=91.77 E-value=0.59 Score=41.33 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
.||+|.+++-+|+.+|++|+.+.++... ...++.++. ....+|.+..+|..|-....+.+..
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iN--P~GkVPvL~~d~~~L~ES~aI~~YL 133 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKIS--PEGKVPVVKLDEKWVADSDVITQAL 133 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhC--CCCCCCEEEECCEEEecHHHHHHHH
Confidence 5999999999999999999988776532 234455664 4679999999998887777666543
No 284
>PRK14282 chaperone protein DnaJ; Provisional
Probab=91.72 E-value=0.19 Score=46.55 Aligned_cols=39 Identities=26% Similarity=0.664 Sum_probs=31.3
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK 247 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~ 247 (251)
...|..|+|.+.+ +|+.|+|+-+.. .-+|+.|+..|.+.
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 222 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP----------GEYCHECGGSGRIR 222 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC----------CCCCCCCCCceeEE
Confidence 4689999999865 699999998862 24699999888653
No 285
>PRK14284 chaperone protein DnaJ; Provisional
Probab=91.68 E-value=0.17 Score=47.35 Aligned_cols=39 Identities=23% Similarity=0.644 Sum_probs=31.7
Q ss_pred CCccccccCCcce-----------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 198 ACTICQVCGGYRL-----------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 198 ~~~~C~~Cgg~~~-----------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
....|..|+|.+. .+|+.|+|.-++. .-.|+.|+-.|.+
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 223 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI----------TDPCSVCRGQGRI 223 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc----------CCcCCCCCCccee
Confidence 3568999999987 5899999997762 2469999988865
No 286
>PRK14279 chaperone protein DnaJ; Provisional
Probab=91.62 E-value=0.17 Score=47.30 Aligned_cols=39 Identities=26% Similarity=0.802 Sum_probs=31.8
Q ss_pred CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946 199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK 247 (251)
Q Consensus 199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~ 247 (251)
...|..|+|.|.+ +|+.|+|.-++. .-+|+.|+-.|.++
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~g~v~ 239 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII----------EDPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe----------CCcCCCCCCCeEEE
Confidence 4789999999875 799999998873 24699999888763
No 287
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=91.61 E-value=0.46 Score=35.19 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=36.5
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..++.|.++| |++|++....|++. .+.+..+|++.+. ..++.+.+ +...+|.+++
T Consensus 20 ~~lv~f~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~--~i~~~Pt~~~ 80 (109)
T cd03002 20 TTLVEFYAPW------CGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKY--GVQGFPTLKV 80 (109)
T ss_pred eEEEEEECCC------CHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHc--CCCcCCEEEE
Confidence 4788899997 99999987777653 2445556666522 23344445 4677898864
No 288
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=91.59 E-value=0.39 Score=39.81 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=38.7
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI 93 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~ 93 (251)
.-|+.|.++| |+.|+.+...|+.+ .+.|..+|++.. ++...+ +..++|.++ -+|+.+
T Consensus 85 ~VVV~Fya~w------c~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f--~v~~vPTlllyk~G~~v 148 (175)
T cd02987 85 TVVVHIYEPG------IPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEF--DTDALPALLVYKGGELI 148 (175)
T ss_pred EEEEEEECCC------CchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhC--CCCCCCEEEEEECCEEE
Confidence 3466678887 99999988887664 355666666643 455556 567899874 466554
No 289
>KOG2813|consensus
Probab=91.57 E-value=0.17 Score=45.69 Aligned_cols=22 Identities=36% Similarity=0.818 Sum_probs=17.9
Q ss_pred CccccccCCcceeeCCCCCCCc
Q psy15946 199 CTICQVCGGYRLLPCSLCNGSK 220 (251)
Q Consensus 199 ~~~C~~Cgg~~~~~C~~C~gs~ 220 (251)
...|.+|-|.|-+.|+.||||-
T Consensus 187 v~~ch~c~gRG~~vc~gc~g~G 208 (406)
T KOG2813|consen 187 VTFCHACLGRGAMVCHGCSGSG 208 (406)
T ss_pred hhhhhcccCCCceeccCcCCCC
Confidence 4578888888888888888875
No 290
>PRK14280 chaperone protein DnaJ; Provisional
Probab=91.57 E-value=0.19 Score=46.76 Aligned_cols=38 Identities=34% Similarity=0.809 Sum_probs=30.7
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.|.+ +|+.|+|+-+.. ..+|+.|+-.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 212 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI----------KEKCPTCHGKGKV 212 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee----------cCCCCCCCCceEE
Confidence 4679999999764 799999998763 2569999988865
No 291
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=91.56 E-value=0.42 Score=38.04 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=37.4
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-|+.|.++| |++|+.....|.+. .+.|..+|++.+. ..++.+.+ +...+|.+++
T Consensus 21 k~vvV~F~A~W------C~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~--~V~~iPt~v~ 82 (142)
T cd02950 21 KPTLVEFYADW------CTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRY--RVDGIPHFVF 82 (142)
T ss_pred CEEEEEEECCc------CHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHc--CCCCCCEEEE
Confidence 45677888887 99999988887753 2456666666432 12344445 5677898864
No 292
>PRK14277 chaperone protein DnaJ; Provisional
Probab=91.52 E-value=0.17 Score=47.20 Aligned_cols=53 Identities=26% Similarity=0.696 Sum_probs=28.5
Q ss_pred CccccccCCcc------eeeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+ ...|+.|+|+-.++...+ +.--.....|+.|+-.|.+ +|+.|
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 218 (386)
T PRK14277 155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKC 218 (386)
T ss_pred eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCC
Confidence 45677777765 356777777765432111 0000123567777766644 46555
No 293
>PRK14276 chaperone protein DnaJ; Provisional
Probab=91.42 E-value=0.19 Score=46.79 Aligned_cols=38 Identities=26% Similarity=0.743 Sum_probs=30.8
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.|.+ +|+.|+|+-+.. .-+|+.|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~~ 215 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI----------KEPCQTCHGTGHE 215 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc----------cCCCCCCCCceEE
Confidence 4689999998754 799999998873 2479999988875
No 294
>PRK15113 glutathione S-transferase; Provisional
Probab=91.40 E-value=0.76 Score=38.75 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=52.2
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
.+++|+... .++++|.+++-+|...||+|+.+.++.. +....++.++. ....||.+.++|..|-....+.+
T Consensus 5 ~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~VP~L~~~~~~l~ES~aI~~ 77 (214)
T PRK15113 5 AITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYS--LTRRVPTLQHDDFELSESSAIAE 77 (214)
T ss_pred eEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcC--CCCCCCEEEECCEEEecHHHHHH
Confidence 467888641 1489999999999999999998877542 22345666665 47899999999887766665554
No 295
>PLN02378 glutathione S-transferase DHAR1
Probab=91.39 E-value=0.78 Score=38.79 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=47.8
Q ss_pred CCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 116 DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 116 ~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
..|++|.+++-+|+..|++|+.+.|+.... ..++.+.. ....+|.+..+|..|-....+.+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~in--P~G~VPvL~~~~~~l~ES~aI~~YL 80 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDIS--PQGKVPVLKIDDKWVTDSDVIVGIL 80 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhC--CCCCCCEEEECCEEecCHHHHHHHH
Confidence 369999999999999999998877765322 23566664 4789999998888887766666543
No 296
>PRK14300 chaperone protein DnaJ; Provisional
Probab=91.34 E-value=0.2 Score=46.52 Aligned_cols=38 Identities=26% Similarity=0.720 Sum_probs=30.8
Q ss_pred CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.+.+ +|+.|+|.-+.. ..+|+.|+-.|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII----------KNPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe----------CCCCCCCCCceEE
Confidence 4679999999876 699999998763 2569999988875
No 297
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=91.31 E-value=0.46 Score=38.97 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=38.6
Q ss_pred hHHHHHHHHhcCCceeEEEc-CCCHHHHHHHHHHhC----CCCCCCceEEECCe-eeCChHHHHHHH
Q psy15946 121 CLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERLG----TDVINVPQIFVEGV-HIGDADAIERLN 181 (251)
Q Consensus 121 C~~~k~lL~~~~v~~~e~dv-~~~~~~~~el~~~~g----~~~~~vP~vfi~g~-~iGG~d~l~~l~ 181 (251)
=..+..++.+.|++-.+.+- ..+++.++.+.+... .+...+|.++|||+ .+-|.+.+..|.
T Consensus 123 ~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 123 PDVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHHH
Confidence 34578889999986555442 344555555544321 34789999999999 677767665543
No 298
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=91.18 E-value=0.19 Score=36.85 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=36.0
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-++.|.++| |++|+++...+... .+.+..+|++.+ ...++.+.+ +...+|.+++
T Consensus 18 ~~~~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~--~i~~~Pt~~~ 81 (104)
T cd02997 18 KHVLVMFYAPW------CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEY--NVKGFPTFKY 81 (104)
T ss_pred CCEEEEEECCC------CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhC--CCccccEEEE
Confidence 35788999998 99999987555432 244555666652 123344455 4667898754
No 299
>PRK14298 chaperone protein DnaJ; Provisional
Probab=91.14 E-value=0.22 Score=46.32 Aligned_cols=38 Identities=32% Similarity=0.748 Sum_probs=30.6
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.|.+ +|+.|+|.-+.. .-+|+.|+-.|.+
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 210 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI----------ESPCPVCSGTGKV 210 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc----------CCCCCCCCCccEE
Confidence 4679999999854 799999998762 2469999988865
No 300
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=91.14 E-value=1 Score=35.13 Aligned_cols=58 Identities=7% Similarity=-0.029 Sum_probs=35.4
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHH-HHHH--------cCCccceeeccCCHHHHHHHHH----HhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQ-ILRT--------HLVKFDDKDVFMSRETQQEFKE----RLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~-~L~~--------~~v~~~e~dv~~d~~~~~el~~----~~g~g~~~vP~i~i 88 (251)
.+-++.|+++| |++|++..+ .+.. .++.+..+|++..++..+.+.+ .+ +...+|.+++
T Consensus 16 KpVll~f~a~W------C~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~--~~~G~Pt~vf 86 (124)
T cd02955 16 KPIFLSIGYST------CHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMT--GQGGWPLNVF 86 (124)
T ss_pred CeEEEEEccCC------CHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhc--CCCCCCEEEE
Confidence 34455677887 999999865 2332 2344566788777765443333 23 3556888864
No 301
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=91.14 E-value=0.19 Score=47.50 Aligned_cols=53 Identities=30% Similarity=0.694 Sum_probs=29.9
Q ss_pred CccccccCCcce-----eeCCCCCCCceeeecccccc--cccceeCCCCCccccc-----ccCCC
Q psy15946 199 CTICQVCGGYRL-----LPCSLCNGSKKSVHRNHFTT--ELVALKCMNCDEVGLV-----KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~~~~--~~~~~~C~~Cnengl~-----~C~~C 251 (251)
...|..|.|.|. ..|+.|+|+-..+....... -....+|+.|+-.|-+ +|+.|
T Consensus 150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C 214 (421)
T PTZ00037 150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNC 214 (421)
T ss_pred cccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcC
Confidence 456777777764 46888888764332111100 0124577777777754 47666
No 302
>PRK14281 chaperone protein DnaJ; Provisional
Probab=91.11 E-value=0.2 Score=46.91 Aligned_cols=53 Identities=28% Similarity=0.620 Sum_probs=30.9
Q ss_pred CccccccCCcce-----eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946 199 CTICQVCGGYRL-----LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C 251 (251)
...|..|.|.+. ..|+.|+|+-.+....+ +.--.....|+.|+-.|.+ +|+.|
T Consensus 163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (397)
T PRK14281 163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPAC 225 (397)
T ss_pred eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCC
Confidence 457777777765 45888888865532110 0000124578888777753 56666
No 303
>KOG0712|consensus
Probab=91.06 E-value=0.26 Score=45.06 Aligned_cols=53 Identities=26% Similarity=0.627 Sum_probs=39.1
Q ss_pred CccccccCCcce-----eeCCCCCCCceeeecccccc---cccceeCCCCCccccc-----ccCCC
Q psy15946 199 CTICQVCGGYRL-----LPCSLCNGSKKSVHRNHFTT---ELVALKCMNCDEVGLV-----KCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~~~~---~~~~~~C~~Cnengl~-----~C~~C 251 (251)
...|..|.|+++ .+|+.|.|+.-.....+..- ....++|..||..|-+ +|+.|
T Consensus 127 ~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C 192 (337)
T KOG0712|consen 127 NFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTC 192 (337)
T ss_pred CccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCccc
Confidence 578888888876 35999999965542222111 2347999999999999 99998
No 304
>PRK14278 chaperone protein DnaJ; Provisional
Probab=91.03 E-value=0.22 Score=46.38 Aligned_cols=38 Identities=32% Similarity=0.750 Sum_probs=30.8
Q ss_pred CccccccCCcce---------------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRL---------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~---------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.+. .+|+.|+|.-++. ..+|+.|+-.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI----------PDPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee----------CCCCCCCCCceeE
Confidence 467999999875 4799999998873 2469999998875
No 305
>PRK14286 chaperone protein DnaJ; Provisional
Probab=91.01 E-value=0.23 Score=46.13 Aligned_cols=39 Identities=31% Similarity=0.754 Sum_probs=31.5
Q ss_pred CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946 199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK 247 (251)
Q Consensus 199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~ 247 (251)
...|..|+|.+.+ +|+.|+|.-++. ..+|+.|+-.|.++
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~~~ 216 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI----------SNPCKTCGGQGLQE 216 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe----------cccCCCCCCCcEEe
Confidence 4689999999865 799999998873 24699999888764
No 306
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=91.00 E-value=0.24 Score=38.29 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=40.4
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCce--eeecccc
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI 93 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i--~i~g~~~ 93 (251)
.-|+-|+++| |+.|+.+-.+|++.. +.|..+|++..++..+++. ....|.. |-+|+|+
T Consensus 16 lVVVdF~a~W------C~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~------I~amPtfvffkngkh~ 81 (114)
T cd02986 16 VLVLRFGRDE------DAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD------ISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEEEeCCC------ChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC------ceeCcEEEEEECCcEE
Confidence 3566688887 999999999988753 5577788988887443332 2335554 5667885
No 307
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=90.99 E-value=0.77 Score=35.30 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=42.9
Q ss_pred cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eeccc
Q psy15946 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVH 92 (251)
Q Consensus 21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~ 92 (251)
.....|+.|+.+| ..||.|..+.-+|++.. +.|..+|++.+++ +...+ +..++|++. -+|+.
T Consensus 26 ~~~~~v~~f~~~~----~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~----la~~f--~V~sIPTli~fkdGk~ 95 (111)
T cd02965 26 AGGDLVLLLAGDP----VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA----LAARF--GVLRTPALLFFRDGRY 95 (111)
T ss_pred CCCCEEEEecCCc----ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH----HHHHc--CCCcCCEEEEEECCEE
Confidence 4456788888882 12999999998887642 3455777777764 55555 567799885 35554
Q ss_pred c
Q psy15946 93 I 93 (251)
Q Consensus 93 ~ 93 (251)
+
T Consensus 96 v 96 (111)
T cd02965 96 V 96 (111)
T ss_pred E
Confidence 4
No 308
>PRK14301 chaperone protein DnaJ; Provisional
Probab=90.95 E-value=0.23 Score=46.17 Aligned_cols=38 Identities=32% Similarity=0.910 Sum_probs=30.7
Q ss_pred CccccccCCcce-----------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRL-----------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~-----------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.|. .+|+.|+|+.+.. ..+|+.|+-.|.+
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 209 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI----------THPCPKCKGSGIV 209 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec----------CCCCCCCCCCcee
Confidence 467999999986 4799999998873 2469999988865
No 309
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=90.91 E-value=0.63 Score=38.78 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=46.7
Q ss_pred CCcchHHHHHHHHhcCCceeEEEcCC-C--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 117 TYHRCLKVKQILRTHLVKFDDKDVFM-S--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 117 tc~~C~~~k~lL~~~~v~~~e~dv~~-~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
+++.+.+++-+|+..|++|+.+.++. . .....++.+.. ....+|.+.++|..+-....+...
T Consensus 7 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~ES~aI~~y 71 (210)
T TIGR01262 7 RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALN--PQGLVPTLDIDGEVLTQSLAIIEY 71 (210)
T ss_pred CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcC--CCCcCCEEEECCEEeecHHHHHHH
Confidence 47899999999999999999987764 1 11234566654 478999999999888776666553
No 310
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=90.91 E-value=1.2 Score=33.14 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=38.8
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i 171 (251)
|+.|..+| |+.|..+...|++. .+.|..+|++.+.+. .++.+..+ ...+|.+ |-+|+.+
T Consensus 19 vv~F~a~w------C~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~--V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKH------SGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREK--IIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCC------CHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcC--CCcCCEEEEEeCCeEE
Confidence 45566676 99999888777653 566777787666432 34555555 6788974 4477643
No 311
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=90.89 E-value=0.58 Score=35.91 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=38.6
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
...-++.|.++| |++|+.+...+++.. +.+-.+|++.+.+.. .+.+ +..++|++.+
T Consensus 29 ~~~vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~---~~~~--~I~~~PTl~l 90 (113)
T cd03006 29 AEVSLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC---RKQK--HFFYFPVIHL 90 (113)
T ss_pred CCEEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH---HHhc--CCcccCEEEE
Confidence 455788999998 999999988887642 456677777666532 1233 3456888754
No 312
>PLN02473 glutathione S-transferase
Probab=90.79 E-value=0.46 Score=39.88 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=44.8
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
.+.+|+.+. ++++.+++-+|+.++++|+.+.++... ....++.++. ...++|.+..+|..+
T Consensus 2 ~~kLy~~~~------s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l 64 (214)
T PLN02473 2 VVKVYGQIK------AANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQ--PFGQVPAIEDGDLKL 64 (214)
T ss_pred ceEEecCCC------CCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC--CCCCCCeEEECCEEE
Confidence 357898884 899999999999999999988665432 2344555553 456799998776543
No 313
>KOG0907|consensus
Probab=90.71 E-value=0.46 Score=36.15 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=35.2
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCcee
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF 87 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~ 87 (251)
|+-|+++| |+.|+.+.=+++++- +.|-.+|++. -.++.... +...+|.+.
T Consensus 25 VvdF~a~w------CgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~--~V~~~PTf~ 79 (106)
T KOG0907|consen 25 VVDFYATW------CGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEF--NVKAMPTFV 79 (106)
T ss_pred EEEEECCC------CcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhc--CceEeeEEE
Confidence 55588887 999999999998864 4455677776 23344444 467789884
No 314
>PRK14277 chaperone protein DnaJ; Provisional
Probab=90.65 E-value=0.27 Score=45.84 Aligned_cols=38 Identities=29% Similarity=0.721 Sum_probs=31.0
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.+.+ +|+.|+|+.+.. .-+|+.|+-.|.+
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII----------TDPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec----------cCCCCCCCCCcEE
Confidence 4689999999764 799999998873 2469999998875
No 315
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=90.58 E-value=0.53 Score=34.88 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=35.3
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------C--CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------L--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~--v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-++.|.++| |++|++....|++. + +.+..+|++..++ +.+.+ +..++|.+++
T Consensus 16 ~~vlv~f~a~w------C~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~I~~~Pt~~l 78 (104)
T cd03000 16 DIWLVDFYAPW------CGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEF--GVRGYPTIKL 78 (104)
T ss_pred CeEEEEEECCC------CHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhc--CCccccEEEE
Confidence 34678888897 99999877666542 2 3344556655443 44445 4677899864
No 316
>PRK14289 chaperone protein DnaJ; Provisional
Probab=90.57 E-value=0.26 Score=45.92 Aligned_cols=39 Identities=33% Similarity=0.807 Sum_probs=31.1
Q ss_pred CCccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 198 ACTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 198 ~~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
....|..|+|.|.+ +|+.|+|..+.. ..+|+.|+-.|.+
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 223 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII----------KKKCKKCGGEGIV 223 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc----------CcCCCCCCCCcEE
Confidence 35789999998775 799999997762 3579999988865
No 317
>PRK10767 chaperone protein DnaJ; Provisional
Probab=90.54 E-value=0.29 Score=45.38 Aligned_cols=38 Identities=29% Similarity=0.683 Sum_probs=30.7
Q ss_pred CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.|.+ +|+.|+|..+.. ..+|+.|+-.|.+
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 207 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII----------KDPCKKCHGQGRV 207 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC----------CCCCCCCCCCceE
Confidence 4589999999876 599999998862 2569999988865
No 318
>PTZ00051 thioredoxin; Provisional
Probab=90.42 E-value=0.71 Score=33.47 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=36.9
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i 171 (251)
++.|+.+| |+.|..+...|+.. ++.|..+|++... .+.+..+ ...+|.+ |-+|+.+
T Consensus 22 li~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEW------CGPCKRIAPFYEECSKEYTKMVFVKVDVDELS----EVAEKEN--ITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHcCCcEEEEEECcchH----HHHHHCC--CceeeEEEEEeCCeEE
Confidence 45666675 99999988877663 5667777776543 3444454 6778875 4466543
No 319
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=90.39 E-value=1.2 Score=32.01 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=35.5
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH 170 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~ 170 (251)
++.|.+++ |+.|..+...|++ + .+.+..+|.+.+.+ +.+..+ ...+|.+++ +|+.
T Consensus 18 vi~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 18 LVDFWAPW------CGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYG--IRSIPTLLLFKNGKE 80 (101)
T ss_pred EEEEECCC------CHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcC--CCcCCEEEEEeCCcE
Confidence 34455554 9999988766644 2 36677888876654 344454 678998655 6653
No 320
>PRK14297 chaperone protein DnaJ; Provisional
Probab=90.38 E-value=0.28 Score=45.62 Aligned_cols=38 Identities=34% Similarity=0.770 Sum_probs=30.8
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.|.+ +|+.|+|..+.. ..+|+.|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 217 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI----------EDPCNKCHGKGKV 217 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc----------CCCCCCCCCCeEE
Confidence 4679999999865 799999998863 2479999988865
No 321
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=90.37 E-value=0.42 Score=42.26 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=39.0
Q ss_pred CCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 39 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 39 ~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
.||+|++++-+|+.++++|+.+.|+.... -+++.++. -...+|++..+|..+
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~~-~~~fl~iN--P~GkVPvL~~d~~~L 123 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTNK-PEWFLKIS--PEGKVPVVKLDEKWV 123 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCcC-CHHHHhhC--CCCCCCEEEECCEEE
Confidence 59999999999999999999877654321 23455554 456799998877543
No 322
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=90.37 E-value=0.11 Score=41.01 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=34.4
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHH----c-CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----H-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~-~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g 90 (251)
-.|.|++.+| ||+|....=+|.+ . ++++..+..+.+++.++.+.. .|..++|.+++-+
T Consensus 43 ~~ilvi~e~W------CgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt---~g~~~IP~~I~~d 105 (129)
T PF14595_consen 43 YNILVITETW------CGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT---NGGRSIPTFIFLD 105 (129)
T ss_dssp EEEEEE--TT-------HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT----SS--SSEEEEE-
T ss_pred cEEEEEECCC------chhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh---CCCeecCEEEEEc
Confidence 3899999998 9999987666655 3 566666655555555544443 3788999997653
No 323
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=90.33 E-value=0.79 Score=32.43 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=38.2
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV 91 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~ 91 (251)
.++|..+. .+.|..++-+|+..+++|+.+.++...+.. ++.........++|.+.++|.
T Consensus 2 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~ 60 (79)
T cd03077 2 PVLHYFNG------RGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGM 60 (79)
T ss_pred CEEEEeCC------CChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCE
Confidence 46788774 678999999999999999988776432211 111100001347899977653
No 324
>PLN02378 glutathione S-transferase DHAR1
Probab=90.28 E-value=0.45 Score=40.23 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=39.4
Q ss_pred CCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 38 DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 38 ~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
..||+|++++-+|+.++++|+.+.|+.... -.++.++. ....+|++..+|..+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~in--P~G~VPvL~~~~~~l 70 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDIS--PQGKVPVLKIDDKWV 70 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhC--CCCCCCEEEECCEEe
Confidence 369999999999999999998776654322 23566664 457899998876543
No 325
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=90.22 E-value=0.88 Score=32.33 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=42.2
Q ss_pred CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
..+.|.++.-+|+..|++|+.++...... .. ....+|.+-+||+.|++...+..+.
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~--P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRANAEF-------MS--PSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCCccc-------cC--CCCcccEEEECCEEEeCHHHHHHHH
Confidence 46788999999999999999887533101 11 2357999999999999988776643
No 326
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=90.18 E-value=2 Score=30.37 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=45.2
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
.++|.... .+.+..++-+|+..|++|+.+.++..+++. ++..........+|.+.+||..+.....+...
T Consensus 2 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYFNG------RGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEeCC------CChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence 35666662 567889999999999999988776533221 11110001245899998898877665555443
No 327
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.15 E-value=0.59 Score=37.74 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCceeEEEc-CCCHHHHHHHHHHh----CCCCCCCceEEECCeeeCC
Q psy15946 122 LKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL----GTDVINVPQIFVEGVHIGD 173 (251)
Q Consensus 122 ~~~k~lL~~~~v~~~e~dv-~~~~~~~~el~~~~----g~~~~~vP~vfi~g~~iGG 173 (251)
..+.+++.+.|++.+.++- ..+.+..+.+.+.. ..+...+|.++|||+++-+
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~ 156 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVN 156 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEC
Confidence 5677888888886544322 12333333332221 1237889999999997544
No 328
>PRK14295 chaperone protein DnaJ; Provisional
Probab=90.12 E-value=0.29 Score=45.71 Aligned_cols=38 Identities=26% Similarity=0.645 Sum_probs=30.9
Q ss_pred CccccccCCcce-----------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRL-----------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~-----------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.+. .+|+.|+|..++. ..+|+.|+..|.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~~ 231 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA----------DDPCLVCKGSGRA 231 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe----------ccCCCCCCCCceE
Confidence 468999999976 4899999998873 2479999988865
No 329
>PRK14294 chaperone protein DnaJ; Provisional
Probab=89.95 E-value=0.32 Score=45.02 Aligned_cols=38 Identities=34% Similarity=0.763 Sum_probs=30.7
Q ss_pred CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.+.+ +|+.|+|..+.. .-.|+.|+-.|.+
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 209 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI----------VSPCKTCHGQGRV 209 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec----------CcCCCCCCCceEe
Confidence 4579999999864 799999998863 2579999988865
No 330
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=89.74 E-value=0.34 Score=45.80 Aligned_cols=41 Identities=34% Similarity=0.773 Sum_probs=31.9
Q ss_pred CccccccCCcce---------------eeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946 199 CTICQVCGGYRL---------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK 247 (251)
Q Consensus 199 ~~~C~~Cgg~~~---------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~ 247 (251)
...|..|+|.|. .+|+.|+|+-+++. ..-+|+.|+..|.++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~--------~~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP--------ESKKCKNCSGKGVKK 221 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc--------ccccCCcCCCcceee
Confidence 467999999984 38999999988741 124799999888764
No 331
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=89.71 E-value=1.5 Score=35.58 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=27.4
Q ss_pred cCCCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccC
Q psy15946 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFM 64 (251)
Q Consensus 21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~ 64 (251)
.+...|+.|.++| |++|++..-.|.+ .++.+..++++.
T Consensus 49 l~~~~lvnFWAsW------CppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 49 QDDYALVFFYQST------CPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred cCCCEEEEEECCC------ChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 3566899999998 9999987766654 455555555554
No 332
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=89.57 E-value=0.57 Score=39.46 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=41.2
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceee
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i 88 (251)
+++|..+ .+++.+++-+|+.++++|+.++|+... ....+++++. ....||++..
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iN--P~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS--PNNKIPAIVD 57 (215)
T ss_pred eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhC--cCCCCCEEEe
Confidence 5788776 688999999999999999988776432 2235677664 4567999976
No 333
>PLN02473 glutathione S-transferase
Probab=89.55 E-value=1.3 Score=37.18 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=50.2
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
+.+|... +.+.+.+++-+|..+|++|+.+.+... +....++.+.. ....+|.+..+|..|.....+.+.
T Consensus 3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQ--PFGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC--CCCCCCeEEECCEEEEehHHHHHH
Confidence 3577665 478999999999999999988766432 22334455553 467999999999888777766663
No 334
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=89.52 E-value=0.35 Score=40.34 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=42.4
Q ss_pred EEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC-C-HH-HHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 28 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-S-RE-TQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 28 vyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~-d-~~-~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
+|+... ++++.+++-+|..++++|+.+.++. . .+ .-.++.++. ...++|.+..+|..+
T Consensus 2 Ly~~~~------s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l 62 (210)
T TIGR01262 2 LYSYWR------SSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALN--PQGLVPTLDIDGEVL 62 (210)
T ss_pred cccCCC------CCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcC--CCCcCCEEEECCEEe
Confidence 676663 8999999999999999999887764 1 12 224566553 467899998876543
No 335
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=89.45 E-value=0.25 Score=41.46 Aligned_cols=24 Identities=29% Similarity=0.783 Sum_probs=21.3
Q ss_pred CccccccCCcceee-----CCCCCCCcee
Q psy15946 199 CTICQVCGGYRLLP-----CSLCNGSKKS 222 (251)
Q Consensus 199 ~~~C~~Cgg~~~~~-----C~~C~gs~k~ 222 (251)
...|+.|+|.|+++ |+.|+|+.++
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence 68999999999985 9999999766
No 336
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=89.42 E-value=0.67 Score=35.32 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=35.4
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC---------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL---------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~---------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-|+.|.++| |+.|+.....+++.. +.+..+|.+.+ ...++.+.+ +...+|++++
T Consensus 20 ~~vvV~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~--~i~~~Pt~~l 84 (114)
T cd02992 20 SAWLVEFYASW------CGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALCRDF--GVTGYPTLRY 84 (114)
T ss_pred CeEEEEEECCC------CHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHHHhC--CCCCCCEEEE
Confidence 35788889998 999999888876632 23333343322 224455555 4677898854
No 337
>PRK14288 chaperone protein DnaJ; Provisional
Probab=89.31 E-value=0.29 Score=45.38 Aligned_cols=39 Identities=26% Similarity=0.686 Sum_probs=31.3
Q ss_pred CCccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 198 ACTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 198 ~~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
....|..|+|.|.+ +|+.|+|..+.. .-.|+.|+-.|.+
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 204 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII----------KTPCQACKGKTYI 204 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc----------cccCccCCCcceE
Confidence 34679999999965 699999998873 2469999988865
No 338
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=89.09 E-value=0.44 Score=43.83 Aligned_cols=39 Identities=33% Similarity=0.738 Sum_probs=30.9
Q ss_pred CccccccCCcce---------------eeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946 199 CTICQVCGGYRL---------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK 247 (251)
Q Consensus 199 ~~~C~~Cgg~~~---------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~ 247 (251)
...|..|+|.+. .+|+.|+|+.+.. .-.|+.|+-.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII----------KEPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec----------CCCCCCCCCCcEec
Confidence 567999999874 4799999998863 23699999888764
No 339
>PRK09381 trxA thioredoxin; Provisional
Probab=88.95 E-value=1.2 Score=33.08 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=36.9
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~~i 171 (251)
++.|.++| |+.|..+...|++ + ++.+..+|++.++.. ....+ ..++|.++ -+|+.+
T Consensus 25 vv~f~~~~------C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~--v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYG--IRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCC--CCcCCEEEEEeCCeEE
Confidence 45566665 9999988766643 2 355677788766543 33444 77899864 477755
No 340
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=0.49 Score=43.84 Aligned_cols=40 Identities=33% Similarity=0.680 Sum_probs=31.2
Q ss_pred CCccccccCCcce-------------eeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946 198 ACTICQVCGGYRL-------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK 247 (251)
Q Consensus 198 ~~~~C~~Cgg~~~-------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~ 247 (251)
....|..|+|+|. ++|+.|+|+-++. .-.|+.|+-.|.++
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i----------~~pC~~C~G~G~v~ 210 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII----------KDPCGKCKGKGRVK 210 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC----------CCCCCCCCCCCeEe
Confidence 4678999999884 5799999998773 35899998877653
No 341
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=88.61 E-value=1.3 Score=31.91 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=35.9
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~i 171 (251)
++.|..+| |+.|..+...|++. .+.+..+|.+... ++.+..+ ...+|. +|.+|+.+
T Consensus 18 ~v~f~~~~------C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPW------AEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP----EISEKFE--ITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHhCCceEEEEEccccCH----HHHHhcC--CccccEEEEEECCEEE
Confidence 45566675 99999998877652 4555566665443 3445554 678897 45567643
No 342
>PRK14290 chaperone protein DnaJ; Provisional
Probab=88.55 E-value=0.35 Score=44.75 Aligned_cols=38 Identities=29% Similarity=0.678 Sum_probs=30.7
Q ss_pred CccccccCCcce---------------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRL---------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~---------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.+. .+|+.|+|..+.. ..+|+.|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP----------EEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc----------cCCCCCCCCceeE
Confidence 468999999884 4899999998762 3579999988775
No 343
>PRK14287 chaperone protein DnaJ; Provisional
Probab=88.39 E-value=0.45 Score=44.15 Aligned_cols=38 Identities=37% Similarity=0.799 Sum_probs=30.5
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.|.+ +|+.|+|+.++. ...|+.|+-.|.+
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 207 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII----------KQKCATCGGKGKV 207 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc----------cccCCCCCCeeEE
Confidence 4679999999853 799999998862 2469999988765
No 344
>PRK14281 chaperone protein DnaJ; Provisional
Probab=88.37 E-value=0.36 Score=45.23 Aligned_cols=38 Identities=26% Similarity=0.678 Sum_probs=30.9
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.+.+ +|+.|+|..+.. .-+|+.|+-.|.+
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 231 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV----------KDRCPACYGEGIK 231 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee----------CCCCCCCCCCccE
Confidence 4679999999853 699999998873 2469999988876
No 345
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=88.18 E-value=0.85 Score=32.98 Aligned_cols=56 Identities=30% Similarity=0.476 Sum_probs=37.1
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i 171 (251)
|+.|+++| |+.|..++..|.+ + ++.|-.+|.+.+ ..+.+..+ ...+|.+ |-+|+.+
T Consensus 21 vv~f~~~~------C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~--v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 21 VVYFYAPW------CPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN----KELCKKYG--VKSVPTIIFFKNGKEV 84 (103)
T ss_dssp EEEEESTT------SHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS----HHHHHHTT--CSSSSEEEEEETTEEE
T ss_pred EEEEeCCC------CCccccccceecccccccccccccchhhhhcc----chhhhccC--CCCCCEEEEEECCcEE
Confidence 45566664 9999988877633 3 466778888766 34555554 7789995 4566543
No 346
>PRK11752 putative S-transferase; Provisional
Probab=88.06 E-value=1.3 Score=39.00 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=42.8
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeec
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g 90 (251)
.+.+++|+.+ .++|.+++-+|+.+ +++|+.+.|+.. .....++.++. -...||++..++
T Consensus 42 ~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iN--P~GkVP~Lv~~d 108 (264)
T PRK11752 42 KHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEIN--PNSKIPALLDRS 108 (264)
T ss_pred CCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhC--CCCCCCEEEeCC
Confidence 4479999966 89999999999986 888887766542 22234666664 456799998653
No 347
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=88.01 E-value=0.93 Score=34.70 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=34.4
Q ss_pred eeeeeeecccccCCCcchHHHHHHHH---------hcCCceeEEEcCCCHH---------HHHHHHHHhCCCCCCCceE-
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILR---------THLVKFDDKDVFMSRE---------TQQEFKERLGTDVINVPQI- 164 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~---------~~~v~~~e~dv~~~~~---------~~~el~~~~g~~~~~vP~v- 164 (251)
++.|.++| |++|.++...+. +.++.+..+|++.+.. ...++....+ ...+|.+
T Consensus 18 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~--v~~~Pt~~ 89 (125)
T cd02951 18 LLLFSQPG------CPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR--VRFTPTVI 89 (125)
T ss_pred EEEEeCCC------CHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC--CccccEEE
Confidence 45666675 999998775442 1234455666655421 1245666665 6789994
Q ss_pred EECC
Q psy15946 165 FVEG 168 (251)
Q Consensus 165 fi~g 168 (251)
|+++
T Consensus 90 ~~~~ 93 (125)
T cd02951 90 FLDP 93 (125)
T ss_pred EEcC
Confidence 5554
No 348
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=87.88 E-value=1.5 Score=37.94 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=37.9
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-++.|.++| |++|++....+++. .+.+..+|++.+++ +.+.+ +...+|.+++
T Consensus 53 ~~vlV~FyApW------C~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~----l~~~~--~I~~~PTl~~ 112 (224)
T PTZ00443 53 GPWFVKFYAPW------CSHCRKMAPAWERLAKALKGQVNVADLDATRALN----LAKRF--AIKGYPTLLL 112 (224)
T ss_pred CCEEEEEECCC------ChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH----HHHHc--CCCcCCEEEE
Confidence 45688899998 99999998887663 24455666665544 44455 4677898864
No 349
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=87.80 E-value=1.4 Score=35.69 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=38.5
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc-------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeeeC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHIG 172 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~iG 172 (251)
|+.|.++| |+.|..+...|++. ++.+..+|++.+++..+.+.-........+|. +|.+|+.++
T Consensus 51 vV~Fya~w------C~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTW------SPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCC------CHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 56677776 99999887766322 37778889888875544432111001233787 467777553
No 350
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=87.74 E-value=1.6 Score=32.43 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=36.6
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc------------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCe
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGV 169 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~ 169 (251)
++.|.++| |++|..+...|++. .+.+-.+|.+.+. ++.+..+ ..++|.++ -+|+
T Consensus 22 lv~F~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~~--v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADW------CRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRYR--INKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCC------CHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhCC--CCcCCEEEEEeCCc
Confidence 55677776 99999888777422 2566677777664 4555555 78899864 4554
No 351
>PRK10996 thioredoxin 2; Provisional
Probab=87.57 E-value=2.6 Score=33.25 Aligned_cols=56 Identities=20% Similarity=0.390 Sum_probs=36.7
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i 171 (251)
++.|+++| |+.|..+...|... ++.+..+|++.+++ +.+..+ ..++|.+ |-+|+.+
T Consensus 56 vv~F~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~--V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPW------CGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFR--IRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCC------CHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcC--CCccCEEEEEECCEEE
Confidence 55677776 99999877666442 34566677766654 444554 6788985 4477744
No 352
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=87.43 E-value=1.4 Score=31.73 Aligned_cols=56 Identities=11% Similarity=0.227 Sum_probs=36.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~~i 171 (251)
++.|.++| |+.|..+...|.+. .+.+..+|++.+. ++.+..+ ...+|.++ -+|+.+
T Consensus 16 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~l~~~~~--i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPR------SPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP----QIAQQFG--VQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCC------ChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH----HHHHHcC--CCCCCEEEEEeCCEEe
Confidence 45566675 99999887776542 2445667776654 3445554 67899954 466543
No 353
>PRK14293 chaperone protein DnaJ; Provisional
Probab=87.36 E-value=0.61 Score=43.31 Aligned_cols=38 Identities=32% Similarity=0.770 Sum_probs=29.0
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|.|.+.+ +|+.|+|..+.. ..+|..|+-.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI----------EDPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe----------ccCCCCCCCCccc
Confidence 4579999999864 699999998762 2469999887764
No 354
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=87.29 E-value=1.8 Score=31.63 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=35.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc-------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi 166 (251)
++.|.++| |+.|..+...|++. ++.+..+|.+.++. +....+ ...+|.+++
T Consensus 20 lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~--i~~~Pt~~~ 77 (101)
T cd02994 20 MIEFYAPW------CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFF--VTALPTIYH 77 (101)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcC--CcccCEEEE
Confidence 66777776 99999887776433 45667777776654 344444 678899764
No 355
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=87.21 E-value=1.7 Score=32.21 Aligned_cols=60 Identities=22% Similarity=0.343 Sum_probs=32.2
Q ss_pred hheeeeeeecccccCCCcchHHHHHHHHhc---------CCceeEEEcCCCHH----------------HHHHHHHHhCC
Q psy15946 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRE----------------TQQEFKERLGT 156 (251)
Q Consensus 102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~---------~v~~~e~dv~~~~~----------------~~~el~~~~g~ 156 (251)
..|++|+..+ |++|.++.+.+... ++.+..+++..+.. ...++....|
T Consensus 7 ~~v~~F~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 79 (112)
T PF13098_consen 7 PIVVVFTDPW------CPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG- 79 (112)
T ss_dssp EEEEEEE-TT-------HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred EEEEEEECCC------CHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC-
Confidence 3456666664 99999886666531 23344445544331 2345666665
Q ss_pred CCCCCceEE-EC--Ce
Q psy15946 157 DVINVPQIF-VE--GV 169 (251)
Q Consensus 157 ~~~~vP~vf-i~--g~ 169 (251)
....|.++ ++ |+
T Consensus 80 -v~gtPt~~~~d~~G~ 94 (112)
T PF13098_consen 80 -VNGTPTIVFLDKDGK 94 (112)
T ss_dssp ---SSSEEEECTTTSC
T ss_pred -CCccCEEEEEcCCCC
Confidence 77889965 44 55
No 356
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=87.17 E-value=0.62 Score=30.98 Aligned_cols=39 Identities=18% Similarity=0.453 Sum_probs=28.6
Q ss_pred cceeeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 208 YRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 208 ~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
..++.||.|++..+.-.+....-+.--+-||.|..--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEEE
Confidence 468999999999887665554444446899999865554
No 357
>PRK14283 chaperone protein DnaJ; Provisional
Probab=87.12 E-value=0.65 Score=43.23 Aligned_cols=38 Identities=37% Similarity=0.841 Sum_probs=28.8
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.+.+ +|+.|+|.-+.. ...|..|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 215 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV----------EKPCSNCHGKGVV 215 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec----------CCCCCCCCCceee
Confidence 4679999998764 599999987762 2468888887764
No 358
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=87.12 E-value=0.46 Score=28.89 Aligned_cols=31 Identities=13% Similarity=0.501 Sum_probs=22.9
Q ss_pred eeCCCCCCCceeeecccccccccceeCCCCCc
Q psy15946 211 LPCSLCNGSKKSVHRNHFTTELVALKCMNCDE 242 (251)
Q Consensus 211 ~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cne 242 (251)
+.|+.|+..-.+ -+.....++..++|+.|.+
T Consensus 3 i~Cp~C~~~y~i-~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEI-DDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeC-CHHHCCCCCcEEECCCCCC
Confidence 679999987665 2333456677899999986
No 359
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=87.09 E-value=1.7 Score=30.38 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=40.3
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCC-CCCCceeee-cccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDV-INVPQIFVE-GVHI 93 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~-~~vP~i~i~-g~~~ 93 (251)
++.+|.-+ . .+..++-+|+..+++|+.+.++. .....+++.+.. .. ..+|.+..+ |..+
T Consensus 2 ~l~l~~~~------~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~--p~~g~vP~l~~~~~~~l 64 (76)
T PF02798_consen 2 TLTLYNGR------G--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAIN--PMFGKVPALEDGDGFVL 64 (76)
T ss_dssp EEEEESSS------T--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHT--TTSSSSSEEEETTTEEE
T ss_pred EEEEECCC------C--chHHHHHHHHHhcccCceEEEecccccccchhhhhcc--cccceeeEEEECCCCEE
Confidence 35566655 2 88999999999999998887664 333347777765 34 689999887 4443
No 360
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=87.06 E-value=2 Score=33.05 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=42.2
Q ss_pred chheeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeC
Q psy15946 101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG 172 (251)
Q Consensus 101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iG 172 (251)
...|+.|+.+| ..|+.|..+.-+|++.- +.+..+|++.++ ++....+ ..++|.+ |-+|+.++
T Consensus 28 ~~~v~~f~~~~----~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~--V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 28 GDLVLLLAGDP----VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFG--VLRTPALLFFRDGRYVG 97 (111)
T ss_pred CCEEEEecCCc----ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcC--CCcCCEEEEEECCEEEE
Confidence 34466677664 24999999888875543 335567777664 5666665 7889984 66888765
No 361
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=86.98 E-value=4.9 Score=32.20 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=53.7
Q ss_pred chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC--CCCCCCceEEECCeeeCC---hH
Q psy15946 101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVINVPQIFVEGVHIGD---AD 175 (251)
Q Consensus 101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g--~~~~~vP~vfi~g~~iGG---~d 175 (251)
.-++++|.+. +|.-|..--+.|+.+|.++...+... ...+++++| ....+-=...|+|.+|-| ++
T Consensus 25 ~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~ 94 (149)
T COG3019 25 ATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDD----FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAE 94 (149)
T ss_pred eeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCc----HHHHHHhcCCChhhccccEEEEcCEEEeccCCHH
Confidence 4457788777 69999999999999999877776643 345666665 112334458999999987 46
Q ss_pred HHHHHHHcCC
Q psy15946 176 AIERLNESGE 185 (251)
Q Consensus 176 ~l~~l~e~G~ 185 (251)
.+.+|.++..
T Consensus 95 aI~~ll~~~p 104 (149)
T COG3019 95 AIARLLAEKP 104 (149)
T ss_pred HHHHHHhCCC
Confidence 6777766654
No 362
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=0.98 Score=37.85 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=44.8
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH-HHHHHHHHHhCCCCCCCCceeeecc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGV 91 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~-~~~~el~~~~g~g~~~vP~i~i~g~ 91 (251)
++|..+. .|+|.+++-.|..+|++|+.+.|+... ....++.++. ....||++..++-
T Consensus 2 ~L~~~~~------sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~n--P~gkVPvL~~~~~ 59 (211)
T COG0625 2 KLYGSPT------SPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALN--PLGKVPALVDDDG 59 (211)
T ss_pred eeecCCC------CcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcC--CCCCCCEEeeCCC
Confidence 5677775 599999999999999999999887774 4456677664 4577999987753
No 363
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=86.85 E-value=0.93 Score=34.83 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=33.1
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE-EEC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI-FVE 167 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v-fi~ 167 (251)
++.|+++| |+.|..+...+.+ ....|..+|++.+.+... +..+.....+|.+ |++
T Consensus 23 lV~F~a~W------C~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~---~~~~~~g~~vPt~~f~~ 84 (117)
T cd02959 23 MLLIHKTW------CGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD---EEFSPDGGYIPRILFLD 84 (117)
T ss_pred EEEEeCCc------CHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh---hhcccCCCccceEEEEC
Confidence 35567776 9999998887766 334577888876643221 2222111248985 453
No 364
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=86.71 E-value=0.76 Score=46.62 Aligned_cols=53 Identities=25% Similarity=0.493 Sum_probs=37.6
Q ss_pred eeeCChHHHHHHHHcCChhhhhccCCCC-----CCCccccccCCcce------------eeCCCCCCCcee
Q psy15946 169 VHIGDADAIERLNESGELRRILKPYKSP-----DACTICQVCGGYRL------------LPCSLCNGSKKS 222 (251)
Q Consensus 169 ~~iGG~d~l~~l~e~G~L~~~L~~~~~~-----~~~~~C~~Cgg~~~------------~~C~~C~gs~k~ 222 (251)
.|.|-+|++++|+.+-- +....++... -+.+.|++|+|.|+ +||+.|+|.+.-
T Consensus 696 TYtg~Fd~IR~lFA~tp-eAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 696 TYTGVFDDIRELFAGTP-EAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred chhcchHHHHHHHhcCh-HHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 47778999999986542 2233333322 24689999999996 789999998653
No 365
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=86.51 E-value=3.9 Score=30.17 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=34.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh----cC---CceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT----HL---VKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVH 170 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~~---v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~ 170 (251)
|+.|+++| |+.|..+...|.. ++ +.+..+|++ +. ++.+..+ ...+|. +|-+|+.
T Consensus 21 vv~F~a~w------C~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~--v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEW------CGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYR--GKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCc------CHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcC--CCcCcEEEEEECCEE
Confidence 45677777 9999988776643 32 445566665 32 3444544 678886 4556763
No 366
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=86.34 E-value=2.3 Score=30.09 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=32.3
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHh----c----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRT----H----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF 165 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~----~----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf 165 (251)
-+++|++++ |+.|..+...|.. . ++.+..+|.+.+ .++.+..+ ...+|.++
T Consensus 18 ~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~--i~~~Pt~~ 76 (101)
T cd02961 18 VLVEFYAPW------CGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN----NDLCSEYG--VRGYPTIK 76 (101)
T ss_pred EEEEEECCC------CHHHHhhhHHHHHHHHHhccCCceEEEEeeccch----HHHHHhCC--CCCCCEEE
Confidence 356667674 9999988777644 2 344555565543 34555555 67899864
No 367
>PRK14291 chaperone protein DnaJ; Provisional
Probab=86.27 E-value=0.78 Score=42.77 Aligned_cols=37 Identities=32% Similarity=0.807 Sum_probs=29.3
Q ss_pred CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.+.+ +|+.|+|...+ ...|+.|+-.|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-----------~~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL-----------REPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE-----------ccCCCCCCCCceE
Confidence 5679999999875 79999999843 2469999887765
No 368
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=86.23 E-value=0.4 Score=30.88 Aligned_cols=38 Identities=26% Similarity=0.495 Sum_probs=24.1
Q ss_pred CCcceeeCCCCCCCceeeecccc-cccccceeCCCCCcc
Q psy15946 206 GGYRLLPCSLCNGSKKSVHRNHF-TTELVALKCMNCDEV 243 (251)
Q Consensus 206 gg~~~~~C~~C~gs~k~~~~~~~-~~~~~~~~C~~Cnen 243 (251)
||.-|+.|..|.--=........ +.....+||.+|.|-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 68899999999764222211111 112457999999874
No 369
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=85.98 E-value=3.8 Score=32.09 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCceeEEEcCCCHH-------HHHHHHHHhCCCCCCCceEEECCeee--CChHHHHH
Q psy15946 123 KVKQILRTHLVKFDDKDVFMSRE-------TQQEFKERLGTDVINVPQIFVEGVHI--GDADAIER 179 (251)
Q Consensus 123 ~~k~lL~~~~v~~~e~dv~~~~~-------~~~el~~~~g~~~~~vP~vfi~g~~i--GG~d~l~~ 179 (251)
.+.+.|++.|+.+..+++.+++. ..+.|. ..| ...+|.++|||+.+ |.|-...+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~-~~G--~e~LPitlVdGeiv~~G~YPt~eE 93 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQ-TEG--AEALPITLVDGEIVKTGRYPTNEE 93 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHH-HH---GGG-SEEEETTEEEEESS---HHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHH-HcC--cccCCEEEECCEEEEecCCCCHHH
Confidence 45567899999999999988753 233333 333 67899999999865 65544333
No 370
>KOG1422|consensus
Probab=85.78 E-value=2.1 Score=36.59 Aligned_cols=67 Identities=13% Similarity=0.021 Sum_probs=48.2
Q ss_pred eEEEEeecCCCC---CCCCchHHHHHHHHHHcCCcc--ceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccc
Q psy15946 25 KIVMYSTTMGIV---RDTYHRCLKVKQILRTHLVKF--DDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTW 96 (251)
Q Consensus 25 ~vvvyt~~~~~~---~~~C~~C~~~k~~L~~~~v~~--~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~ 96 (251)
.+-++.+.+++. -..||+|+++-..|..++++| ..+|++..++. ++.++ ....+|.+..++.++...
T Consensus 3 ~iel~vkA~s~~~~~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~---f~~~s--p~~~~P~l~~d~~~~tDs 74 (221)
T KOG1422|consen 3 EIELCVKAGSDGPDSLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEW---FLDIS--PGGKPPVLKFDEKWVTDS 74 (221)
T ss_pred ceEEEEEeccCCcccCCCChhHHHHHHHHHHcCCCceEEEeecCCCcHH---HHhhC--CCCCCCeEEeCCceeccH
Confidence 345555544333 448999999999999999876 55677777764 55565 467799999999876553
No 371
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=85.64 E-value=1.1 Score=35.93 Aligned_cols=43 Identities=7% Similarity=0.167 Sum_probs=32.6
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHH
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEF 72 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el 72 (251)
.-|+-|+++| |+.|+.+-.+|++.. +.+..+||+..++..+++
T Consensus 25 lVVvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y 73 (142)
T PLN00410 25 LVVIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY 73 (142)
T ss_pred EEEEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc
Confidence 4677799998 999999988888743 445778999888754433
No 372
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=85.62 E-value=2.1 Score=31.19 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=38.5
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~ 89 (251)
.+-+++|..+| |+.|.+++..|++.. +.|..+|++..+. +.+.+|-....+|.+.+-
T Consensus 13 ~~~~~~f~~~~------~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~i~~~~~P~~~~~ 75 (103)
T cd02982 13 KPLLVLFYNKD------DSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFGLKEEDLPVIAII 75 (103)
T ss_pred CCEEEEEEcCC------hhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcCCChhhCCEEEEE
Confidence 45788888887 999999999988732 5566666665444 445553222378988753
No 373
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=85.48 E-value=1.9 Score=38.31 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=38.2
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccCCHH-------HHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSRE-------TQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~d~~-------~~~el~~~~g~g~~~vP~i~i 88 (251)
...|+.|.++| |++|++..-.|.. +++.+..++++.+.. .-..+.+.+ +...+|.+++
T Consensus 167 k~~Lv~F~Asw------Cp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~--gV~~vPtl~L 235 (271)
T TIGR02740 167 KSGLFFFFKSD------CPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQL--KIRTVPAVFL 235 (271)
T ss_pred CeEEEEEECCC------CccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHc--CCCcCCeEEE
Confidence 45788888997 9999987766654 566666666655321 012344455 5678999975
No 374
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=85.41 E-value=0.83 Score=38.11 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=40.9
Q ss_pred EEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCcee-eecccc
Q psy15946 28 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHI 93 (251)
Q Consensus 28 vyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~ 93 (251)
+|.... ||+|.+|+.++--++|+++.+-+..|.+. . =.++. |...||.+. -+|+..
T Consensus 3 LYIYdH------CPfcvrarmi~Gl~nipve~~vL~nDDe~-T-p~rmi--G~KqVPiL~Kedg~~m 59 (215)
T COG2999 3 LYIYDH------CPFCVRARMIFGLKNIPVELHVLLNDDEE-T-PIRMI--GQKQVPILQKEDGRAM 59 (215)
T ss_pred eeEecc------ChHHHHHHHHhhccCCChhhheeccCccc-C-hhhhh--cccccceEEccccccc
Confidence 566675 99999999999999999999887766652 1 12233 677889886 444443
No 375
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=85.22 E-value=4.7 Score=31.43 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=31.8
Q ss_pred cCCCcchH-----------HHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeee
Q psy15946 115 RDTYHRCL-----------KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 171 (251)
Q Consensus 115 r~tc~~C~-----------~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i 171 (251)
.+||+.|. .++..|..+|+.+....+.++.+ ++.. .....|.|.|||+.|
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~----~~~~S~~I~inG~pi 72 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFAR----QPLESPTIRINGRPI 72 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhh----cccCCCeeeECCEeh
Confidence 56899987 56667888998754444433322 1111 125679999999844
No 376
>PLN02395 glutathione S-transferase
Probab=85.15 E-value=3.2 Score=34.61 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=50.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
+.+|... .+.+.+++-+|...|++|+.+.++.. .....++.+.. ....+|.+..+|..+-....+.+..
T Consensus 3 ~~ly~~~-------~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~l~ES~aI~~YL 73 (215)
T PLN02395 3 LKVYGPA-------FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQ--PFGVVPVIVDGDYKIFESRAIMRYY 73 (215)
T ss_pred EEEEcCC-------cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC--CCCCCCEEEECCEEEEcHHHHHHHH
Confidence 5677633 34578999999999999998877543 12335666665 4789999998888787777666643
Q ss_pred H
Q psy15946 182 E 182 (251)
Q Consensus 182 e 182 (251)
+
T Consensus 74 ~ 74 (215)
T PLN02395 74 A 74 (215)
T ss_pred H
Confidence 3
No 377
>PRK14292 chaperone protein DnaJ; Provisional
Probab=85.11 E-value=0.75 Score=42.65 Aligned_cols=38 Identities=26% Similarity=0.686 Sum_probs=29.8
Q ss_pred CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
...|..|+|.|.+ +|+.|+|..+.. ...|+.|+..|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII----------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec----------CCCCCCCCCceEE
Confidence 5679999998754 599999997762 3579999987764
No 378
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=84.89 E-value=3.6 Score=31.78 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=23.3
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHH-------c--CCccceeeccCCHH
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRT-------H--LVKFDDKDVFMSRE 67 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~--~v~~~e~dv~~d~~ 67 (251)
-++.|.++| |+.|++....|.+ . ++.+..++++.+++
T Consensus 20 vll~F~atw------C~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~ 65 (132)
T cd02964 20 VGLYFSASW------CPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEE 65 (132)
T ss_pred EEEEEECCC------CchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHH
Confidence 566777887 9999986655543 1 34455555555543
No 379
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=84.81 E-value=0.2 Score=42.52 Aligned_cols=76 Identities=17% Similarity=0.371 Sum_probs=52.2
Q ss_pred CceEEECCeeeCChHHHHHHHHcCChhhhhccCCCCCC--CccccccCCcceeeCCCCCCCceeeecccccccccceeCC
Q psy15946 161 VPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDA--CTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCM 238 (251)
Q Consensus 161 vP~vfi~g~~iGG~d~l~~l~e~G~L~~~L~~~~~~~~--~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~ 238 (251)
.|.-+++.-++=...+|.++. +|.|.+.|+.+-.... -..|..|.+.|| .|..|+.+.-+ ..... ....+|+
T Consensus 103 ~~~hl~~~~~~YSl~DL~~v~-~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~~~I-fPF~~---~~~~~C~ 176 (202)
T PF13901_consen 103 PRDHLLEDPHLYSLADLVQVK-SGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSDDII-FPFQI---DTTVRCP 176 (202)
T ss_pred chhhhhhCCceEcHHHHHHHh-hchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCCCCC-CCCCC---CCeeeCC
Confidence 344455555666778888884 7888888877543322 349999999998 79999998444 22221 2568999
Q ss_pred CCCc
Q psy15946 239 NCDE 242 (251)
Q Consensus 239 ~Cne 242 (251)
.|+-
T Consensus 177 ~C~~ 180 (202)
T PF13901_consen 177 KCKS 180 (202)
T ss_pred cCcc
Confidence 8874
No 380
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=84.77 E-value=0.78 Score=30.88 Aligned_cols=32 Identities=28% Similarity=0.664 Sum_probs=21.0
Q ss_pred eeeCCCCCCCceeeeccccccc-c--cceeCCCCCc
Q psy15946 210 LLPCSLCNGSKKSVHRNHFTTE-L--VALKCMNCDE 242 (251)
Q Consensus 210 ~~~C~~C~gs~k~~~~~~~~~~-~--~~~~C~~Cne 242 (251)
+.|||.| |+..+......... . .++.|..|.-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 5799999 88766544322211 1 5788999975
No 381
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=84.76 E-value=5.9 Score=28.14 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHhcCCceeEEEcCCCH-------HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946 118 YHRCLKVKQILRTHLVKFDDKDVFMSR-------ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180 (251)
Q Consensus 118 c~~C~~~k~lL~~~~v~~~e~dv~~~~-------~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l 180 (251)
-+.|.+++-+|...|++|+.+.++... ++.....+. +.....+|.+..+|..+.....+...
T Consensus 9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~-~~P~g~vP~L~~~g~~l~ES~AIl~Y 77 (82)
T cd03075 9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKL-GLDFPNLPYYIDGDVKLTQSNAILRY 77 (82)
T ss_pred ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhc-CCcCCCCCEEEECCEEEeehHHHHHH
Confidence 357789999999999999988776432 111111111 11456999999988877665555443
No 382
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=84.72 E-value=2.3 Score=41.86 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=38.6
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHH-------HH-cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQIL-------RT-HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L-------~~-~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
+-++-|+++| |++|+..+... +. .++.+..+|++.+.+...++.+.+ +...+|.+++
T Consensus 476 ~VlVdF~A~W------C~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~--~v~g~Pt~~~ 540 (571)
T PRK00293 476 PVMLDLYADW------CVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY--NVLGLPTILF 540 (571)
T ss_pred cEEEEEECCc------CHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc--CCCCCCEEEE
Confidence 4566788887 99999876542 11 246667788887654445666666 5677899864
No 383
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=84.71 E-value=0.63 Score=35.79 Aligned_cols=24 Identities=33% Similarity=0.743 Sum_probs=20.1
Q ss_pred CccccccCCcceeeCCCCCCCcee
Q psy15946 199 CTICQVCGGYRLLPCSLCNGSKKS 222 (251)
Q Consensus 199 ~~~C~~Cgg~~~~~C~~C~gs~k~ 222 (251)
...|..|+|.|.++|..|+|+..+
T Consensus 75 ~~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 75 VSKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred EEECCCCCCcceeeCCCCCCCEEE
Confidence 568889999998889999998665
No 384
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=84.67 E-value=0.91 Score=32.98 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=34.4
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC--------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL--------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~--------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-++.|.++| |++|+.....|++.. +.+..+|.+.+ ++.... +...+|.+++
T Consensus 19 ~~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~--~~~~~Pt~~~ 79 (104)
T cd02995 19 KDVLVEFYAPW------CGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEF--VVDGFPTILF 79 (104)
T ss_pred CcEEEEEECCC------CHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhc--cCCCCCEEEE
Confidence 45678899998 999999888776632 34455555543 223333 3467898864
No 385
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=84.59 E-value=1.7 Score=31.29 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=32.7
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhc--------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF 165 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~--------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf 165 (251)
-++.|++++ |+.|..+...|+.. ++.+..+|...+. ++.+..+ ...+|.++
T Consensus 16 ~~i~f~~~~------C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~--i~~~P~~~ 74 (102)
T TIGR01126 16 VLVEFYAPW------CGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK----DLASRFG--VSGFPTIK 74 (102)
T ss_pred EEEEEECCC------CHHHHhhChHHHHHHHHhccCCceEEEEEEccchH----HHHHhCC--CCcCCEEE
Confidence 367777785 99999766655332 2556666665553 4445554 67899874
No 386
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=84.54 E-value=3.6 Score=31.56 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=16.4
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHH
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILR 51 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~ 51 (251)
.-++.|.++| |+.|++....|.
T Consensus 20 ~vll~Fwa~w------C~~C~~~~p~l~ 41 (131)
T cd03009 20 TVGLYFSASW------CPPCRAFTPKLV 41 (131)
T ss_pred EEEEEEECCC------ChHHHHHhHHHH
Confidence 3567777887 999998666654
No 387
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=84.36 E-value=3.2 Score=30.60 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=36.1
Q ss_pred EEEeecCCCCCCCCchH------HHHHHHHHH--------cCCccceeeccCCHH--HHHHHHHHhCCCCCCCCceeeec
Q psy15946 27 VMYSTTMGIVRDTYHRC------LKVKQILRT--------HLVKFDDKDVFMSRE--TQQEFKERLGTDVINVPQIFVEG 90 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C------~~~k~~L~~--------~~v~~~e~dv~~d~~--~~~el~~~~g~g~~~vP~i~i~g 90 (251)
+||++.- .|+.| +..-+||+. +.+.|+++||...++ ..+++.+..-....-.|.+.++|
T Consensus 1 ~VYGAe~-----~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~ 75 (93)
T PF07315_consen 1 VVYGAEV-----ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVIND 75 (93)
T ss_dssp EEEE-SS-------GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETT
T ss_pred Ccccccc-----cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECC
Confidence 4677765 67777 445566654 346788999977664 33444433322445579999999
Q ss_pred ccccc
Q psy15946 91 VHIGT 95 (251)
Q Consensus 91 ~~~gG 95 (251)
+.++.
T Consensus 76 eiV~E 80 (93)
T PF07315_consen 76 EIVAE 80 (93)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88754
No 388
>PLN02395 glutathione S-transferase
Probab=84.23 E-value=2 Score=35.91 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=42.3
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
.++||+.+. +.+.+++-+|+.+|++|+.+.++... ....+++++. -...+|.+..+|..
T Consensus 2 ~~~ly~~~~-------~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~ 62 (215)
T PLN02395 2 VLKVYGPAF-------ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQ--PFGVVPVIVDGDYK 62 (215)
T ss_pred eEEEEcCCc-------CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC--CCCCCCEEEECCEE
Confidence 368998663 35799999999999999988776532 2234677664 45679999876643
No 389
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=84.04 E-value=2.5 Score=30.94 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=34.2
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEG 168 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g 168 (251)
++.|.++| |+.|..+...+++. .+.+..+|.+.+++ +.+..+ ...+|.+ |-+|
T Consensus 23 ~v~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--i~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPW------CGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQAN--IRAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcC--CCcccEEEEEcCC
Confidence 45667776 99999876666432 25567777776543 444444 7788985 4455
No 390
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=83.89 E-value=3 Score=33.53 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=29.0
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc--------------CCccceeeccCCHHHHHHHHHHh
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------------LVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------------~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
.-++-|.++| ||+|++..-.|.+. ++.+-.++++.+.+...++.+..
T Consensus 27 ~vlL~FwAsW------CppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~ 87 (146)
T cd03008 27 VLLLFFGAVV------SPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM 87 (146)
T ss_pred EEEEEEECCC------ChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC
Confidence 4567778887 99999988777551 34445555555544444444443
No 391
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=83.69 E-value=2.7 Score=30.48 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=31.8
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF 165 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf 165 (251)
++.|.++| |+.|..+...|.+. .+.+..+|.+.+.+ +.+..+ ...+|.++
T Consensus 22 lv~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~--i~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPW------CGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYG--VRGFPTIK 77 (103)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCC--CCccCEEE
Confidence 44555564 99999887766442 34566777765543 444554 67899863
No 392
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=83.42 E-value=5.5 Score=30.29 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=43.5
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
...++||--|. +||-...|.+-|++. .+++..+||..+.+.-.++.+.+| -....||+++
T Consensus 19 ~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~-V~HeSPQ~il 84 (105)
T PF11009_consen 19 EKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFG-VKHESPQVIL 84 (105)
T ss_dssp -SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEE
T ss_pred cCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhC-CCcCCCcEEE
Confidence 55788888886 799999998888762 288999999999999999999996 3455799975
No 393
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=83.40 E-value=0.8 Score=38.44 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=24.3
Q ss_pred ceeeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946 209 RLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK 247 (251)
Q Consensus 209 ~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~ 247 (251)
+-..|+.|+|+.++... ..+|+.|+-.|.++
T Consensus 98 ~~~~C~~C~G~G~~i~~--------~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRR--------QRECDTCAGTGRFR 128 (186)
T ss_pred cCCcCCCCCCeeEEecC--------CCCCCCCCCccEEe
Confidence 48899999999888421 15899999988764
No 394
>PRK10357 putative glutathione S-transferase; Provisional
Probab=83.16 E-value=1.7 Score=36.03 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=40.5
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-ecc
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGV 91 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~ 91 (251)
.+|+... ++++++++-+|+.++++|+.++++.... ..++.+.. ....+|++.. +|.
T Consensus 2 ~Ly~~~~------s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~n--P~g~vP~L~~~~g~ 58 (202)
T PRK10357 2 KLIGSYT------SPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYN--PLGKVPALVTEEGE 58 (202)
T ss_pred eeecCCC------CchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcC--CccCCCeEEeCCCC
Confidence 5788874 9999999999999999999887764321 12334443 4567999985 443
No 395
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=83.00 E-value=3.2 Score=31.23 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=35.8
Q ss_pred eeeeeeecccccCCCcchHHHHHHH----Hh---cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQIL----RT---HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL----~~---~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i 171 (251)
++.|.++| |+.|..+..+| +. .++.+..+|++.++. +....+ ..++|.+ |.+|+.+
T Consensus 28 lV~F~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~--V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 28 LIKITSDW------CFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLG--AHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEECCc------cHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcC--CccCCEEEEEECCEEE
Confidence 45667776 99998666544 22 356677777766543 444454 7889985 4677644
No 396
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=82.94 E-value=2.3 Score=29.79 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=38.8
Q ss_pred CCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946 34 GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQ 97 (251)
Q Consensus 34 ~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~ 97 (251)
-|..+..|+|.++..+|+-.+++|+.+ .+.++. .+ ....+|.+..+|+.+.+++
T Consensus 10 ~g~ps~sp~clk~~~~Lr~~~~~~~v~-~~~n~~-------~s--p~gkLP~l~~~~~~i~d~~ 63 (73)
T cd03078 10 WGLPSVDPECLAVLAYLKFAGAPLKVV-PSNNPW-------RS--PTGKLPALLTSGTKISGPE 63 (73)
T ss_pred CCCCcCCHHHHHHHHHHHcCCCCEEEE-ecCCCC-------CC--CCCccCEEEECCEEecChH
Confidence 366778899999999999999999554 333322 11 2345899998887777653
No 397
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=82.91 E-value=3.9 Score=32.78 Aligned_cols=41 Identities=7% Similarity=0.225 Sum_probs=29.1
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEF 150 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el 150 (251)
|+-|+.+| |+.|..+-.+|++.- +.+..+||+..+++.+++
T Consensus 27 VvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y 73 (142)
T PLN00410 27 VIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY 73 (142)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc
Confidence 45577787 999999888876654 345778998776554433
No 398
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=82.87 E-value=3 Score=34.48 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=37.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeeeC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHIG 172 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~iG 172 (251)
|+-|+.+| |+.|..+...|+.+ .++|..+|++.. ++....+ ...+|. +|-+|+.++
T Consensus 87 VV~Fya~w------c~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~--v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 87 VVHIYEPG------IPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFD--TDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEECCC------CchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCC--CCCCCEEEEEECCEEEE
Confidence 34456665 99999777766443 356667777532 5666665 778997 466888664
No 399
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=82.83 E-value=2.4 Score=30.72 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=32.1
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh----c----CCceeEEEcCC-CHHHHHHHHHHhCCCCCCCceEEE
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H----LVKFDDKDVFM-SRETQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~----~v~~~e~dv~~-~~~~~~el~~~~g~~~~~vP~vfi 166 (251)
++.|+++| |+.|..+...+.. + ++.+..+|.+. +++ +.+..+ ...+|.+++
T Consensus 22 ~v~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~--i~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPW------CGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKYG--VSGFPTLKF 81 (105)
T ss_pred EEEEECCC------CHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhCC--CCCcCEEEE
Confidence 56677775 9999977666633 2 35566667666 443 333444 678998654
No 400
>PTZ00057 glutathione s-transferase; Provisional
Probab=82.80 E-value=9.1 Score=31.90 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=47.6
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh---CCCCCCCceEEECCeeeCChHHHHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL---GTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~---g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
++++|.... -+.+..++-+|+..|++|+.+.+....+.-.+..+.. ......+|.+.+||..+.....+..
T Consensus 4 ~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 4 EIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred ceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 367777653 6677899999999999999987753221100111111 1357789999999987776666555
No 401
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=82.80 E-value=5.2 Score=33.54 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=46.2
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEE-----CCe--eeCCh
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV-----EGV--HIGDA 174 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi-----~g~--~iGG~ 174 (251)
+.+|... .+.+.+++-+|+.+|++|+.++++... ....++.++. +...+|.+.. +|+ .+-..
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iN--P~gkVP~L~~~~~~d~g~~~~L~ES 72 (215)
T PRK13972 2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS--PNNKIPAIVDHSPADGGEPLSLFES 72 (215)
T ss_pred eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhC--cCCCCCEEEeCCCCCCCCceeEEcH
Confidence 3567654 578999999999999999988776432 2345677665 4779999987 342 35555
Q ss_pred HHHHH
Q psy15946 175 DAIER 179 (251)
Q Consensus 175 d~l~~ 179 (251)
..+.+
T Consensus 73 ~AI~~ 77 (215)
T PRK13972 73 GAILL 77 (215)
T ss_pred HHHHH
Confidence 54444
No 402
>KOG0910|consensus
Probab=82.42 E-value=0.67 Score=37.50 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=39.5
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~i 171 (251)
+|-|+..| |.-|+.+.-+|+++- +++..+|++.+.+ |.+..+ ...+|. +|-||+-+
T Consensus 65 lVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y~--I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDYE--ISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhcc--eeeeeEEEEEECCEEe
Confidence 35688888 999999888887653 3456677777655 444444 678888 47788744
No 403
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=82.38 E-value=2.6 Score=31.02 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=32.8
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi 166 (251)
-++.|.++| |+.|..+...|++. .+.+..+|++.+ ...++....+ ...+|.+++
T Consensus 21 ~lv~f~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~~~~~--i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPW------CGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLCGKYG--VQGFPTLKV 80 (109)
T ss_pred EEEEEECCC------CHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHHHHcC--CCcCCEEEE
Confidence 356677776 99999876666443 234455566542 1234555554 778998654
No 404
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=82.36 E-value=3 Score=30.15 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=33.3
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc---------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCe
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGV 169 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~---------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~ 169 (251)
++.|.++| |+.|......|++. .+.+..+|.+.+.. +.+..+ ...+|.++ -+|+
T Consensus 20 lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPW------CGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQ--VRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCC------CHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcC--CCcCCEEEEEeCCC
Confidence 56677776 99999776655332 35566667665543 333444 67899853 4554
No 405
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.34 E-value=4 Score=34.09 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=49.8
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHHhCCCCCCCceEEECCe-eeCChHHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGV-HIGDADAIERL 180 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~~g~~~~~vP~vfi~g~-~iGG~d~l~~l 180 (251)
.+|.... .++|.+++-+|..+|++|+.+.|+... ....++.++. +...||.+..++- .+-....+.+.
T Consensus 2 ~L~~~~~------sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~n--P~gkVPvL~~~~~~~l~ES~AI~~Y 71 (211)
T COG0625 2 KLYGSPT------SPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALN--PLGKVPALVDDDGEVLTESGAILEY 71 (211)
T ss_pred eeecCCC------CcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcC--CCCCCCEEeeCCCCeeecHHHHHHH
Confidence 3555553 499999999999999999999887664 4456677775 4789999988875 45554544443
No 406
>PRK14873 primosome assembly protein PriA; Provisional
Probab=82.23 E-value=2.2 Score=42.76 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=34.4
Q ss_pred CCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCccc-ccccCCC
Q psy15946 198 ACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVG-LVKCYAC 251 (251)
Q Consensus 198 ~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cneng-l~~C~~C 251 (251)
+.-.|..||-. +.|+.|+++-.. |.+ ...++|..|+-.- -.+||.|
T Consensus 382 p~l~C~~Cg~~--~~C~~C~~~L~~-h~~-----~~~l~Ch~CG~~~~p~~Cp~C 428 (665)
T PRK14873 382 PSLACARCRTP--ARCRHCTGPLGL-PSA-----GGTPRCRWCGRAAPDWRCPRC 428 (665)
T ss_pred CeeEhhhCcCe--eECCCCCCceeE-ecC-----CCeeECCCCcCCCcCccCCCC
Confidence 45699999865 899999999664 322 2469999997643 4579988
No 407
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=81.89 E-value=3.2 Score=29.32 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=18.8
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHH
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILR 51 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~ 51 (251)
..+-++.|+++| |++|+..++.+-
T Consensus 17 ~kpvlv~f~a~w------C~~C~~l~~~~~ 40 (82)
T PF13899_consen 17 GKPVLVDFGADW------CPPCKKLEREVF 40 (82)
T ss_dssp TSEEEEEEETTT------THHHHHHHHHTT
T ss_pred CCCEEEEEECCC------CHhHHHHHHHHc
Confidence 455677788887 999999887763
No 408
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=81.66 E-value=6.9 Score=34.26 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=23.5
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKD 61 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~d 61 (251)
....|++||=+ .||||+++-+-+.. -.|.+..+.
T Consensus 117 ak~~I~vFtDp------~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 117 APRIVYVFADP------NCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred CCeEEEEEECC------CChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 34578999999 59999998666543 235555554
No 409
>KOG1422|consensus
Probab=81.65 E-value=4.4 Score=34.62 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=49.6
Q ss_pred CCcchHHHHHHHHhcCCcee--EEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHHc
Q psy15946 117 TYHRCLKVKQILRTHLVKFD--DKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNES 183 (251)
Q Consensus 117 tc~~C~~~k~lL~~~~v~~~--e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e~ 183 (251)
-|++|+++...|...+++|. .+|++..+ ++++.++. ...+|.|-.|+..+-+.+.+.+..|+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp--~~~~P~l~~d~~~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISP--GGKPPVLKFDEKWVTDSDKIEEFLEE 83 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCC--CCCCCeEEeCCceeccHHHHHHHHHH
Confidence 49999999999999999865 45665554 35677775 67899999999999998888876544
No 410
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=81.52 E-value=3.5 Score=35.35 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=43.0
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCC--ccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLV--KFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v--~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
.|.||+-. ||..|...-+.|+++|. .++.+|.+.-+. ..++ ++..++|.+|+||+.+
T Consensus 12 ~VkI~~Hk------tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~----~~V~SvP~Vf~DGel~ 70 (265)
T COG5494 12 EVKIFTHK------TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFE----KGVISVPSVFIDGELV 70 (265)
T ss_pred EEEEEEec------chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhh----cceeecceEEEcCeEE
Confidence 68899988 69999999999999886 355555554443 2222 2678899999999874
No 411
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=81.45 E-value=2.6 Score=35.45 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=35.7
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eeccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVH 92 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~ 92 (251)
-||.|+++| |+.|+.+...|+.+. +.|..+|++.. ...+ +..++|.++ -+|+.
T Consensus 105 VVV~Fya~w------c~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~--~i~~lPTlliyk~G~~ 164 (192)
T cd02988 105 VVVHLYKDG------IPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNY--PDKNLPTILVYRNGDI 164 (192)
T ss_pred EEEEEECCC------CchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhC--CCCCCCEEEEEECCEE
Confidence 456688887 999999999888753 55666666421 2344 567789885 45543
No 412
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=81.39 E-value=2.5 Score=30.92 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=34.9
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCe
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGV 169 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~ 169 (251)
++.|.++| |+.|..+...|++.. +.+..+|++.+++ +.+..+ ...+|.+ |-+|+
T Consensus 22 ~v~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPR------CSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQG--VNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCC------ChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcC--CCccCEEEEEcCCC
Confidence 45667776 999998877764432 4456777776543 444444 6788986 44554
No 413
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=81.26 E-value=3.4 Score=28.97 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=22.7
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeec
Q psy15946 26 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDV 62 (251)
Q Consensus 26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv 62 (251)
|++|+... ||+|..+...|++. ++.+..+.+
T Consensus 1 i~~f~d~~------Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPL------CPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCC------CHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 46788885 99999999998874 355555544
No 414
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=81.08 E-value=6.9 Score=32.30 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=31.1
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHH---cCCccceeeccCCHHHHHHHHHHh
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT---HLVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~---~~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
..|+.|..+| |++|++....|.+ .++.+..++++.+++...++.+..
T Consensus 70 ~vvv~Fwatw------C~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~ 119 (185)
T PRK15412 70 PVLLNVWATW------CPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL 119 (185)
T ss_pred EEEEEEECCC------CHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHc
Confidence 3577788887 9999986655544 467776777666665444454443
No 415
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=80.78 E-value=3.4 Score=32.77 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=35.6
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE-EE--CCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI-FV--EGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v-fi--~g~~i 171 (251)
|+.|.++| |+.|..+...|.+. .+.|..+|++.+. ..++.+..+ ...+|.+ |+ +|+.+
T Consensus 24 vV~F~A~W------C~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~--V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADW------CTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYR--VDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCc------CHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcC--CCCCCEEEEECCCCCEE
Confidence 45677776 99999887776543 2456666765432 223444554 7789985 45 36533
No 416
>PTZ00057 glutathione s-transferase; Provisional
Probab=80.56 E-value=5.9 Score=33.04 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=42.2
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH-H--HHHHHHHhCCCCCCCCceeeecccc
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE-T--QQEFKERLGTDVINVPQIFVEGVHI 93 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~-~--~~el~~~~g~g~~~vP~i~i~g~~~ 93 (251)
+++||..+. -+.+..++-+|+..|++|+.+.+....+ . .++++....+....+|.+.++|..+
T Consensus 4 ~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l 69 (205)
T PTZ00057 4 EIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIF 69 (205)
T ss_pred ceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEE
Confidence 478888764 7788899999999999999987753222 1 1222210112456799999887543
No 417
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=80.09 E-value=8.5 Score=29.17 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=30.7
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHc----CCccceeeccCCHHHHHHHHHHh
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH----LVKFDDKDVFMSRETQQEFKERL 76 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~v~~~e~dv~~d~~~~~el~~~~ 76 (251)
..|+.|..+| |+.|.+....|++. ++.+-.++++.+.+..+++.+..
T Consensus 27 ~vvv~F~a~~------C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~ 77 (127)
T cd03010 27 PYLLNVWASW------CAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARH 77 (127)
T ss_pred EEEEEEEcCc------CHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhc
Confidence 4678888887 99999877777654 35555555555555555554443
No 418
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=79.95 E-value=5.1 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=21.1
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEc
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDV 140 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv 140 (251)
|++|+.. .||+|..+...|++. ++.+..+.+
T Consensus 1 i~~f~d~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDP------LCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECC------CCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 3456655 599999888877664 456666655
No 419
>PF13728 TraF: F plasmid transfer operon protein
Probab=79.65 E-value=5.8 Score=33.93 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=39.6
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccCCH-----H--HHHHHHHHhCCCCCCCCceeee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSR-----E--TQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~d~-----~--~~~el~~~~g~g~~~vP~i~i~ 89 (251)
....+++|..+. |++|+...-+|+. +|+++..++++..+ . .-.++.+.+ +...+|.+|+=
T Consensus 120 ~~~gL~~F~~~~------C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l--~v~~~Pal~Lv 190 (215)
T PF13728_consen 120 QKYGLFFFYRSD------CPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRL--GVKVTPALFLV 190 (215)
T ss_pred hCeEEEEEEcCC------CchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHc--CCCcCCEEEEE
Confidence 345788888884 9999987766664 67877777776321 0 013344456 46789999853
No 420
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.56 E-value=2.9 Score=40.44 Aligned_cols=46 Identities=28% Similarity=0.610 Sum_probs=34.1
Q ss_pred CCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCccc--ccccCCC
Q psy15946 198 ACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVG--LVKCYAC 251 (251)
Q Consensus 198 ~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cneng--l~~C~~C 251 (251)
+.-.|..||-. +.|+.|+++-.. |.+ ...++|..|+-.- -..||.|
T Consensus 212 ~~~~C~~Cg~~--~~C~~C~~~l~~-h~~-----~~~l~Ch~Cg~~~~~~~~Cp~C 259 (505)
T TIGR00595 212 KNLLCRSCGYI--LCCPNCDVSLTY-HKK-----EGKLRCHYCGYQEPIPKTCPQC 259 (505)
T ss_pred CeeEhhhCcCc--cCCCCCCCceEE-ecC-----CCeEEcCCCcCcCCCCCCCCCC
Confidence 45689999975 889999998554 322 2468999998665 3568888
No 421
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=79.43 E-value=4.4 Score=38.88 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=37.7
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..-||.|.++| |++|+.+...|++. ++.+..+|++.+.. +...+.+ +..++|++.+
T Consensus 372 k~VLV~FyApW------C~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~--~I~~~PTii~ 434 (463)
T TIGR00424 372 EAWLVVLYAPW------CPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQEL--QLGSFPTILF 434 (463)
T ss_pred CeEEEEEECCC------ChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHc--CCCccceEEE
Confidence 34688899998 99999988887653 35566677776532 2222334 4567898864
No 422
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=79.32 E-value=1.5 Score=34.38 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=39.7
Q ss_pred CCeEEEEeecCCCCCCCCch--------HHHHHHHHHHcCCccceeeccCCHHHHHH---HHHHhC-CCCCCCCceeeec
Q psy15946 23 AGKIVMYSTTMGIVRDTYHR--------CLKVKQILRTHLVKFDDKDVFMSRETQQE---FKERLG-TDVINVPQIFVEG 90 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~--------C~~~k~~L~~~~v~~~e~dv~~d~~~~~e---l~~~~g-~g~~~vP~i~i~g 90 (251)
|.+|.||--+.==+..-|.. =..+-++|+++|+.+.-+++..+|..+.+ +.+++. .|...+|.++|||
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdG 80 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDG 80 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETT
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECC
Confidence 45677776664111111222 23466778999999999999999876543 222221 2678899999998
Q ss_pred ccc
Q psy15946 91 VHI 93 (251)
Q Consensus 91 ~~~ 93 (251)
+.+
T Consensus 81 eiv 83 (123)
T PF06953_consen 81 EIV 83 (123)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 423
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=79.27 E-value=15 Score=25.49 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=41.2
Q ss_pred chHHHHHHHHhcCCceeEEEcCC--CHHHHHHHHHHhCCCC-CCCceEEEC-CeeeCChHHHHH
Q psy15946 120 RCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDV-INVPQIFVE-GVHIGDADAIER 179 (251)
Q Consensus 120 ~C~~~k~lL~~~~v~~~e~dv~~--~~~~~~el~~~~g~~~-~~vP~vfi~-g~~iGG~d~l~~ 179 (251)
.+..++-+|+..|++|+.+.++. .....+++.+..- . ..+|.+-++ |..+-..-.+..
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p--~~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINP--MFGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTT--TSSSSSEEEETTTEEEESHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhccc--ccceeeEEEECCCCEEEcHHHHHH
Confidence 77899999999999999887654 3333467777753 5 799999999 887766554443
No 424
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=78.93 E-value=3.5 Score=30.76 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=31.7
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc-------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF 165 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf 165 (251)
++.|.++| |++|.++...|.+. ++.+-.+|.+.+. .....+..+ ...+|.++
T Consensus 25 lv~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~--v~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPW------CPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQ--LKSFPTIL 83 (109)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcC--CCcCCEEE
Confidence 45667776 99999888777553 3555666665421 112233344 67899863
No 425
>PRK10357 putative glutathione S-transferase; Provisional
Probab=78.81 E-value=5.7 Score=32.82 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=45.3
Q ss_pred eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIER 179 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~ 179 (251)
.+|+.. .++...+++-+|+..||+|+.++++.... ..++.+.. ....+|.+.. +|..+-....+.+
T Consensus 2 ~Ly~~~------~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~n--P~g~vP~L~~~~g~~l~eS~aI~~ 68 (202)
T PRK10357 2 KLIGSY------TSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYN--PLGKVPALVTEEGECWFDSPIIAE 68 (202)
T ss_pred eeecCC------CCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcC--CccCCCeEEeCCCCeeecHHHHHH
Confidence 466666 48999999999999999999987764321 12344443 4679999985 5665555444443
No 426
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=78.74 E-value=4.1 Score=29.17 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=17.6
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHH
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRT 52 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~ 52 (251)
.++.|.++| |+.|.+....|.+
T Consensus 4 ~ll~fwa~~------c~~c~~~~~~l~~ 25 (95)
T PF13905_consen 4 VLLYFWASW------CPPCKKELPKLKE 25 (95)
T ss_dssp EEEEEE-TT------SHHHHHHHHHHHH
T ss_pred EEEEEECCC------CHHHHHHHHHHHH
Confidence 578888887 9999998877776
No 427
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=78.37 E-value=5.4 Score=30.63 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=39.0
Q ss_pred CCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946 37 RDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH 92 (251)
Q Consensus 37 ~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~ 92 (251)
|--||+|..+.-+|... .++++.+|.. .-+.++.+++|...++.|+++..+..
T Consensus 21 ~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~---RPR~~vi~llGE~~QslPvLVL~~~~ 78 (112)
T PF11287_consen 21 RFYCPHCAAIEGLLASFPDLRERLDVRRVDFP---RPRQAVIALLGEANQSLPVLVLADGA 78 (112)
T ss_pred eEECCchHHHHhHHhhChhhhhcccEEEeCCC---CchHHHHHHhChhccCCCEEEeCCCC
Confidence 34699999999999974 3444444332 33677888898778999999987644
No 428
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=78.18 E-value=9.4 Score=26.64 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946 117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182 (251)
Q Consensus 117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e 182 (251)
-.++|-++..+|+-.+++|+.+... ++. .+ ....+|.|..+|+.|+|.+.+.+..+
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~s--p~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSN-NPW-------RS--PTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecC-CCC-------CC--CCCccCEEEECCEEecChHHHHHHHH
Confidence 3689999999999999999665432 211 11 24579999999999999998877543
No 429
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.13 E-value=6.9 Score=29.15 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeC-ChHHHHH
Q psy15946 132 LVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIG-DADAIER 179 (251)
Q Consensus 132 ~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iG-G~d~l~~ 179 (251)
...|+++||... .+...++.+..-...--.|.|.|+++.|+ |.-.|+.
T Consensus 44 ~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiVaeGnprlKd 94 (106)
T COG4837 44 PFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIVAEGNPRLKD 94 (106)
T ss_pred CcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEeecCCchHHH
Confidence 445788999654 33444454444334567899999999998 4444444
No 430
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=78.09 E-value=6.8 Score=28.93 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=32.4
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcC-CCHHHHHHHHHHhCCCCCCCceEE
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVF-MSRETQQEFKERLGTDVINVPQIF 165 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~-~~~~~~~el~~~~g~~~~~vP~vf 165 (251)
++.|.++| |+.|+.+...|++. ++.+..+|.+ .++ .+.+..+ ...+|.++
T Consensus 22 lV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~--V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYG--VVGFPTIL 77 (100)
T ss_pred EEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcC--CeecCEEE
Confidence 56677787 99999888777544 3445555654 333 4555554 77899854
No 431
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=77.72 E-value=5.8 Score=30.76 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=28.6
Q ss_pred CcchHHHHHHH----HhcC--CceeEEEcCCCHHHH---HHHHHHhCCCCC-CCceEEE
Q psy15946 118 YHRCLKVKQIL----RTHL--VKFDDKDVFMSRETQ---QEFKERLGTDVI-NVPQIFV 166 (251)
Q Consensus 118 c~~C~~~k~lL----~~~~--v~~~e~dv~~~~~~~---~el~~~~g~~~~-~vP~vfi 166 (251)
|+.|..+..+| +.+. +.|..+|+...+..+ .++....+ .. .+|.+.+
T Consensus 40 C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~--I~~~iPT~~~ 96 (119)
T cd02952 40 CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK--LTTGVPTLLR 96 (119)
T ss_pred CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC--cccCCCEEEE
Confidence 99999665544 4443 678888887644222 34444433 44 7898643
No 432
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=77.56 E-value=1.9 Score=26.10 Aligned_cols=32 Identities=22% Similarity=0.537 Sum_probs=20.9
Q ss_pred eeCCCCCCCceeeecccccccccceeCCCCCcc
Q psy15946 211 LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEV 243 (251)
Q Consensus 211 ~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnen 243 (251)
+.||.|+..-++- ..........++||.|...
T Consensus 3 ~~CP~C~~~~~v~-~~~~~~~~~~v~C~~C~~~ 34 (38)
T TIGR02098 3 IQCPNCKTSFRVV-DSQLGANGGKVRCGKCGHV 34 (38)
T ss_pred EECCCCCCEEEeC-HHHcCCCCCEEECCCCCCE
Confidence 6799999886652 2222233457899999764
No 433
>KOG2813|consensus
Probab=76.96 E-value=1.8 Score=39.22 Aligned_cols=51 Identities=22% Similarity=0.537 Sum_probs=33.8
Q ss_pred CccccccCCcc--------eeeCCCCCCCceeeeccccc------ccccceeCCCCCcccccccCCC
Q psy15946 199 CTICQVCGGYR--------LLPCSLCNGSKKSVHRNHFT------TELVALKCMNCDEVGLVKCYAC 251 (251)
Q Consensus 199 ~~~C~~Cgg~~--------~~~C~~C~gs~k~~~~~~~~------~~~~~~~C~~Cnengl~~C~~C 251 (251)
.-.|.+|.|.| -+-|+.|-|= ..+..+.. ..-+.++|+.|.--|+.+|..|
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~--~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC 262 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGV--PPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTC 262 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCC--CCCCCCccchhhhccCCCcccCCcccCCCCcccccc
Confidence 56899999999 8899999981 00111100 1124577888888888888776
No 434
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=76.82 E-value=3.4 Score=31.93 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=37.7
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~i 171 (251)
|+-|+.+| |+.|..+-.+|.++- +.|-.+|++..+++.+++. -...|. +|-+|+|+
T Consensus 18 VVdF~a~W------C~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~------I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDE------DAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD------ISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCC------ChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC------ceeCcEEEEEECCcEE
Confidence 34577776 999999888876653 5577789887766544332 233565 56678876
No 435
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=76.78 E-value=12 Score=28.51 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=43.1
Q ss_pred chheeeeeeecccccCCCcchHHHHHHHH----hcC--CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCeee
Q psy15946 101 AGKIVMYSTTMGIVRDTYHRCLKVKQILR----THL--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI 171 (251)
Q Consensus 101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~----~~~--v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~~i 171 (251)
...++||--|. +|+-...+.+-|+ ... +++.++||-.++..-.++.+.+| -...-||++ -||+.+
T Consensus 19 ~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~-V~HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 19 EKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFG-VKHESPQVILIKNGKVV 91 (105)
T ss_dssp -SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEEEETTEEE
T ss_pred cCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhC-CCcCCCcEEEEECCEEE
Confidence 44577888784 7998887766553 322 88999999999999999999998 456779964 467654
No 436
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=76.68 E-value=9.4 Score=32.96 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=36.7
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhc----C--CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTH----L--VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI 171 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~----~--v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i 171 (251)
++.|.++| |+.|..+...+++. . +.+..+|...++ ++.+..+ ...+|.+ |-+|+.+
T Consensus 56 lV~FyApW------C~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~--I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPW------CSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFA--IKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCC------ChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcC--CCcCCEEEEEECCEEE
Confidence 46677776 99999888877543 2 445556665543 4555555 7788985 4577644
No 437
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=76.52 E-value=4 Score=33.31 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCceeEEE-cCCCHHHHHHHHHHhC----CCCCCCceEEECCeeeCChHHHHHHH
Q psy15946 122 LKVKQILRTHLVKFDDKD-VFMSRETQQEFKERLG----TDVINVPQIFVEGVHIGDADAIERLN 181 (251)
Q Consensus 122 ~~~k~lL~~~~v~~~e~d-v~~~~~~~~el~~~~g----~~~~~vP~vfi~g~~iGG~d~l~~l~ 181 (251)
..+.+++.+.|++.++.. ...+.+.++.+.+... .+...+|.++|+|+++=|.+.+..+.
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence 456778888888644332 2344455554444321 23789999999999988888877654
No 438
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.37 E-value=10 Score=28.25 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=42.9
Q ss_pred CCeEEEEeecCCCCCCCCchHH------HHHHHHHH--------cCCccceeeccCCH--HHHHHHHHHhCCCCCCCCce
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCL------KVKQILRT--------HLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQI 86 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~------~~k~~L~~--------~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i 86 (251)
.-+++||++.- .|..|. ..-+||+. +.+.|+++||...+ +...++.+..-...--.|.|
T Consensus 4 ~~~l~VyGae~-----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPli 78 (106)
T COG4837 4 EAKLVVYGAEV-----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLI 78 (106)
T ss_pred eeEEEEecchh-----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEE
Confidence 34789999886 687774 45566664 34567889996544 33344444332133446999
Q ss_pred eeecccccc
Q psy15946 87 FVEGVHIGT 95 (251)
Q Consensus 87 ~i~g~~~gG 95 (251)
.++++.+..
T Consensus 79 vvedeiVae 87 (106)
T COG4837 79 VVEDEIVAE 87 (106)
T ss_pred EEcceEeec
Confidence 999987753
No 439
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=75.88 E-value=1 Score=35.49 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=29.4
Q ss_pred hheeeeeeecccccCCCcchHHHH----HHHHhc-CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946 102 GKIVMYSTTMGIVRDTYHRCLKVK----QILRTH-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 102 ~~Vviyt~sl~~ir~tc~~C~~~k----~lL~~~-~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi 166 (251)
-.+++++-+| |+||.... ++++.. ++++..+..+.+.+..+.+.. . +...+|.+++
T Consensus 43 ~~ilvi~e~W------CgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~--g~~~IP~~I~ 103 (129)
T PF14595_consen 43 YNILVITETW------CGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-N--GGRSIPTFIF 103 (129)
T ss_dssp EEEEEE--TT-------HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT----SS--SSEEEE
T ss_pred cEEEEEECCC------chhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-C--CCeecCEEEE
Confidence 3688999998 99999554 444555 566655554444444333333 2 4789999654
No 440
>PRK05580 primosome assembly protein PriA; Validated
Probab=75.86 E-value=3.7 Score=41.21 Aligned_cols=46 Identities=28% Similarity=0.640 Sum_probs=33.3
Q ss_pred CCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCccc--ccccCCC
Q psy15946 198 ACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVG--LVKCYAC 251 (251)
Q Consensus 198 ~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cneng--l~~C~~C 251 (251)
+...|..||-. +.|+.|+++-.. |.+ ...++|..|+-.- -..||.|
T Consensus 380 ~~~~C~~Cg~~--~~C~~C~~~l~~-h~~-----~~~l~Ch~Cg~~~~~~~~Cp~C 427 (679)
T PRK05580 380 PFLLCRDCGWV--AECPHCDASLTL-HRF-----QRRLRCHHCGYQEPIPKACPEC 427 (679)
T ss_pred CceEhhhCcCc--cCCCCCCCceeE-ECC-----CCeEECCCCcCCCCCCCCCCCC
Confidence 46789999865 789999998543 322 3568899998664 3478887
No 441
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.84 E-value=2.4 Score=44.01 Aligned_cols=62 Identities=21% Similarity=0.409 Sum_probs=37.0
Q ss_pred CceEEECCeee------------CChHHHHHHHHcCChhhhh----ccCCCCCCCccccccCCccee------------e
Q psy15946 161 VPQIFVEGVHI------------GDADAIERLNESGELRRIL----KPYKSPDACTICQVCGGYRLL------------P 212 (251)
Q Consensus 161 vP~vfi~g~~i------------GG~d~l~~l~e~G~L~~~L----~~~~~~~~~~~C~~Cgg~~~~------------~ 212 (251)
-+.|+|+...| |=+|++..|+..=...+.. ..++-..+.+.|+.|.|.|.+ +
T Consensus 682 ~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~ 761 (924)
T TIGR00630 682 DKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 761 (924)
T ss_pred CceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccC
Confidence 35578877644 4567777776432111100 011112236789999999965 7
Q ss_pred CCCCCCCcee
Q psy15946 213 CSLCNGSKKS 222 (251)
Q Consensus 213 C~~C~gs~k~ 222 (251)
|+.|+|++..
T Consensus 762 C~~C~G~R~~ 771 (924)
T TIGR00630 762 CEVCKGKRYN 771 (924)
T ss_pred CCCcCCceeC
Confidence 9999998654
No 442
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=75.66 E-value=12 Score=29.07 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=30.0
Q ss_pred HHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeee
Q psy15946 124 VKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHI 171 (251)
Q Consensus 124 ~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~i 171 (251)
+..+|+..++.+..+|++.+++ |.+..| ..++|. +|-+|+.+
T Consensus 57 aa~~l~~~~v~~~kVD~d~~~~----La~~~~--I~~iPTl~lfk~G~~v 100 (120)
T cd03065 57 AAQVLEDKGIGFGLVDSKKDAK----VAKKLG--LDEEDSIYVFKDDEVI 100 (120)
T ss_pred HHHHhhcCCCEEEEEeCCCCHH----HHHHcC--CccccEEEEEECCEEE
Confidence 3445666789999999988754 555555 778888 47788744
No 443
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=75.59 E-value=4.9 Score=34.95 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=41.7
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC-----------Cccc----eeeccCCH---HHHHHHHHHhCCCCCCCC
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----------VKFD----DKDVFMSR---ETQQEFKERLGTDVINVP 84 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----------v~~~----e~dv~~d~---~~~~el~~~~g~g~~~vP 84 (251)
..-|.+||..+ |..|-.+-+.|.+.- |+|= -.|-.... +-...+.+.+|....-.|
T Consensus 42 ~~VVELfTSQG------CsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTP 115 (261)
T COG5429 42 LGVVELFTSQG------CSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTP 115 (261)
T ss_pred ceEEEEeecCC------cCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCc
Confidence 34688999997 999999999999853 2221 11222222 222234445554445569
Q ss_pred ceeeeccc-cccc
Q psy15946 85 QIFVEGVH-IGTW 96 (251)
Q Consensus 85 ~i~i~g~~-~gG~ 96 (251)
|.+++|+. ..|.
T Consensus 116 QavvnGr~~~~Ga 128 (261)
T COG5429 116 QAVVNGRVHANGA 128 (261)
T ss_pred hheeechhhhcCC
Confidence 99999964 4443
No 444
>PRK10542 glutathionine S-transferase; Provisional
Probab=75.53 E-value=7.9 Score=31.80 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=41.5
Q ss_pred chHHHHHHHHhcCCceeEEEcCCCHH---HHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHH
Q psy15946 120 RCLKVKQILRTHLVKFDDKDVFMSRE---TQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERL 180 (251)
Q Consensus 120 ~C~~~k~lL~~~~v~~~e~dv~~~~~---~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l 180 (251)
.+.+++-+|+..|++|+.+.++.... ..+++.++. +...+|.+.+ +|..|-....+.+.
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vPvL~~~~g~~l~eS~aI~~Y 72 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAIN--PKGQVPALLLDDGTLLTEGVAIMQY 72 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhC--cCCCCCeEEeCCCcEeecHHHHHHH
Confidence 35677889999999999887764321 225566665 4679999986 66777766666553
No 445
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=75.43 E-value=2.9 Score=27.51 Aligned_cols=34 Identities=29% Similarity=0.730 Sum_probs=19.5
Q ss_pred eeeCCCCCCCceeeeccccc--ccccceeCCCCCccc
Q psy15946 210 LLPCSLCNGSKKSVHRNHFT--TELVALKCMNCDEVG 244 (251)
Q Consensus 210 ~~~C~~C~gs~k~~~~~~~~--~~~~~~~C~~Cneng 244 (251)
+.|||.|.|.-+.++. .+. .......|+.|.--|
T Consensus 1 LkPCPfCGg~~~~~~~-~~~~~~~~~~~~C~~Cga~~ 36 (53)
T TIGR03655 1 LKPCPFCGGADVYLRR-GFDPLDLSHYFECSTCGASG 36 (53)
T ss_pred CCCCCCCCCcceeeEe-ccCCCCCEEEEECCCCCCCc
Confidence 3689999886554431 122 112233898887654
No 446
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=75.13 E-value=2.3 Score=30.90 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=31.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh--------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT--------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF 165 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~--------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf 165 (251)
++.|+++| |+.|..+...|.. ..+.+..+|.+.+ ....+....+ ...+|.++
T Consensus 21 ~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~--i~~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPW------CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEYN--VKGFPTFK 80 (104)
T ss_pred EEEEECCC------CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhCC--CccccEEE
Confidence 46677776 9999977544422 2244556676652 1234445555 66889863
No 447
>PLN02309 5'-adenylylsulfate reductase
Probab=74.96 E-value=6 Score=37.87 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=37.4
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeecc-CCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVF-MSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~-~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
....||.|.++| |++|+.+...|++. ++.|..+|++ .+.+. ..+.+ +..++|.+++
T Consensus 365 ~k~vlV~FyApW------C~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~--~I~~~PTil~ 428 (457)
T PLN02309 365 KEPWLVVLYAPW------CPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQEL--QLGSFPTILL 428 (457)
T ss_pred CCeEEEEEECCC------ChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhC--CCceeeEEEE
Confidence 445789999998 99999988887663 3556666666 33322 22234 4667899864
No 448
>PRK10542 glutathionine S-transferase; Provisional
Probab=74.67 E-value=4.1 Score=33.54 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=36.9
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH---HHHHHHHHhCCCCCCCCceeee
Q psy15946 27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE---TQQEFKERLGTDVINVPQIFVE 89 (251)
Q Consensus 27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~---~~~el~~~~g~g~~~vP~i~i~ 89 (251)
.+|..+. +.+.+++-+|+.+|++|+.+.|+.... ..+++.++. -...+|++.++
T Consensus 2 ~l~~~~~-------s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vPvL~~~ 58 (201)
T PRK10542 2 KLFYKPG-------ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAIN--PKGQVPALLLD 58 (201)
T ss_pred ceeeccc-------HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhC--cCCCCCeEEeC
Confidence 4666552 346778888999999999887765321 225577664 45679999864
No 449
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=74.60 E-value=2.2 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=14.0
Q ss_pred eCCCCCCCceeeecccccccccceeCCCCCc
Q psy15946 212 PCSLCNGSKKSVHRNHFTTELVALKCMNCDE 242 (251)
Q Consensus 212 ~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cne 242 (251)
-|+.|.+..... ..+-+++|+.|+.
T Consensus 5 fC~~CG~~t~~~------~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPA------PGGWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-------SSSS-EEESSSS-
T ss_pred ccCcCCccccCC------CCcCEeECCCCcC
Confidence 488898887763 2245799999974
No 450
>PTZ00102 disulphide isomerase; Provisional
Probab=74.03 E-value=6.3 Score=37.17 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=35.8
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHH-------c--CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT-------H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF 87 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~--~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~ 87 (251)
...-++.|.++| |++|+++...+.+ . .+.+..+|.+.+.+ +.+.+ +...+|.++
T Consensus 49 ~~~~lv~f~a~w------C~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~--~i~~~Pt~~ 111 (477)
T PTZ00102 49 NEIVLVKFYAPW------CGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEF--GVRGYPTIK 111 (477)
T ss_pred CCcEEEEEECCC------CHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhc--CCCcccEEE
Confidence 345788999998 9999987654433 2 36677777776665 33344 345678773
No 451
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=73.63 E-value=16 Score=26.92 Aligned_cols=24 Identities=13% Similarity=0.400 Sum_probs=18.7
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHH
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT 52 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~ 52 (251)
...|+.|..+| |+.|++....|++
T Consensus 22 k~vvl~F~~~w------C~~C~~~~p~l~~ 45 (114)
T cd02967 22 RPTLLFFLSPT------CPVCKKLLPVIRS 45 (114)
T ss_pred CeEEEEEECCC------CcchHhHhHHHHH
Confidence 45677888887 9999988766665
No 452
>KOG4244|consensus
Probab=73.61 E-value=4.3 Score=35.90 Aligned_cols=52 Identities=33% Similarity=0.441 Sum_probs=42.3
Q ss_pred CcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 118 YHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 118 c~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
-|+|-++.-+|+..+|+|+.++-++. .++ ...++|-|-+||++|-+.+.+..
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~~~--------~rS--r~G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCSLK--------RRS--RNGTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred ChHHHHHHHHHHHhCCCceeccccce--------eec--cCCCcceEEeCCeeccccHHHHH
Confidence 47899999999999999999886432 233 25699999999999999886554
No 453
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=73.54 E-value=6.5 Score=29.80 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=31.3
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcC---------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL---------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~---------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi 166 (251)
++.|.++| |+.|..+...+++.. +.+..+|.+.+ ...++.+..+ ...+|.+++
T Consensus 23 vV~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~~--i~~~Pt~~l 84 (114)
T cd02992 23 LVEFYASW------CGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALCRDFG--VTGYPTLRY 84 (114)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHHHhCC--CCCCCEEEE
Confidence 45677776 999998777765432 33334443322 2234555554 678898644
No 454
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=73.50 E-value=8.4 Score=29.41 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=36.1
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCe
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGV 169 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~ 169 (251)
-++.|..+| |++|+.+...|++.. +.+-.+|.+.+.+. ..+..+ ..++|.+ |.+|+
T Consensus 32 vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~--I~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKH--FFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcC--CcccCEEEEEECCc
Confidence 356788887 999998887776543 45566777655432 223333 5678874 55654
No 455
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=73.43 E-value=16 Score=30.26 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=25.7
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHH----HHcCCccceeeccCCHHHHHHHHHH
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSRETQQEFKER 75 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L----~~~~v~~~e~dv~~d~~~~~el~~~ 75 (251)
..|+.|.++| ||.|++....+ ++.++.+.-+..+ +++..+++.+.
T Consensus 76 ~vvl~F~atw------Cp~C~~~lp~l~~~~~~~~~~vv~Is~~-~~~~~~~~~~~ 124 (189)
T TIGR02661 76 PTLLMFTAPS------CPVCDKLFPIIKSIARAEETDVVMISDG-TPAEHRRFLKD 124 (189)
T ss_pred EEEEEEECCC------ChhHHHHHHHHHHHHHhcCCcEEEEeCC-CHHHHHHHHHh
Confidence 3567788887 99999865444 3345555444433 33333444443
No 456
>KOG0867|consensus
Probab=73.39 E-value=3.7 Score=35.22 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=50.9
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCCCCCCceeeecccccccccccch
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAG 102 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~~~ 102 (251)
+.++|+... -+.|.++.-.++.+|++|+.+.|+. -.....++.++. ...++|.+.-+ |+..-+..
T Consensus 2 ~~~ly~~~~------s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~n--P~~kVP~l~d~-----~~~l~eS~ 68 (226)
T KOG0867|consen 2 KLKLYGHLG------SPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLN--PLGKVPALEDG-----GLTLWESH 68 (226)
T ss_pred CceEeecCC------CcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcC--cCCCCCeEecC-----CeEEeeHH
Confidence 467999996 8999999999999999999885543 333455666664 46789998776 44434444
Q ss_pred heeeeeee
Q psy15946 103 KIVMYSTT 110 (251)
Q Consensus 103 ~Vviyt~s 110 (251)
.|+.|-..
T Consensus 69 AI~~Yl~~ 76 (226)
T KOG0867|consen 69 AILRYLAE 76 (226)
T ss_pred HHHHHHHH
Confidence 45554433
No 457
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=73.34 E-value=13 Score=26.51 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=31.2
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCC-HHHHHHHHHHh
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMS-RETQQEFKERL 76 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d-~~~~~el~~~~ 76 (251)
...++.|..+| |+.|.+....|.+. ++.+.-++++.+ ++..+++.+..
T Consensus 20 k~~ll~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~ 75 (116)
T cd02966 20 KVVLVNFWASW------CPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY 75 (116)
T ss_pred CEEEEEeeccc------ChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc
Confidence 45788888887 99999766665543 355666666665 55545554443
No 458
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=73.25 E-value=13 Score=30.11 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=25.4
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHH---cCCccceeeccCCHH
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT---HLVKFDDKDVFMSRE 67 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~---~~v~~~e~dv~~d~~ 67 (251)
.-|+.|.++| |+.|++....|++ .++.+-.++++.+.+
T Consensus 65 ~vll~F~a~w------C~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~ 105 (173)
T TIGR00385 65 PVLLNVWASW------CPPCRAEHPYLNELAKDGLPIVGVDYKDQSQ 105 (173)
T ss_pred EEEEEEECCc------CHHHHHHHHHHHHHHHcCCEEEEEECCCChH
Confidence 4677777887 9999987666654 356666666554443
No 459
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=73.22 E-value=10 Score=31.63 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=36.3
Q ss_pred eeeeeeecccccCCCcchHHH----HHHHHhcCCceeEEEcCCCH-----H----HHHHHHHHhCCCCCCCceEEE
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKV----KQILRTHLVKFDDKDVFMSR-----E----TQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~----k~lL~~~~v~~~e~dv~~~~-----~----~~~el~~~~g~~~~~vP~vfi 166 (251)
+++|..+| |++|.+. +++-+++++.+.-+.++.+. - ....+.+..|.....+|..|+
T Consensus 73 lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 73 VVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 88888897 9999965 66777778877666554321 0 123345555411258899764
No 460
>PHA03075 glutaredoxin-like protein; Provisional
Probab=72.56 E-value=5 Score=31.08 Aligned_cols=33 Identities=12% Similarity=0.341 Sum_probs=28.1
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeec
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV 62 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv 62 (251)
.++++|++|. |+-|..+.++|+...-+|+..-|
T Consensus 3 ~tLILfGKP~------C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 3 KTLILFGKPL------CSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred ceEEEeCCcc------cHHHHHHHHHHHHhhccccEEEE
Confidence 4799999997 99999999999888777766544
No 461
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=72.48 E-value=13 Score=28.30 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=13.0
Q ss_pred eeeeeeecccccCCCcchHHHHHHHH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILR 129 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~ 129 (251)
++.|..+| |+.|......|.
T Consensus 22 ll~Fwa~w------C~~C~~~~p~l~ 41 (131)
T cd03009 22 GLYFSASW------CPPCRAFTPKLV 41 (131)
T ss_pred EEEEECCC------ChHHHHHhHHHH
Confidence 34455665 999997655553
No 462
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=72.46 E-value=7.9 Score=30.16 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=33.5
Q ss_pred eeeeecccccCCCcchHHHHH-HHHh--------cCCceeEEEcCCCHHHHHHHHH----HhCCCCCCCceE-EEC--Ce
Q psy15946 106 MYSTTMGIVRDTYHRCLKVKQ-ILRT--------HLVKFDDKDVFMSRETQQEFKE----RLGTDVINVPQI-FVE--GV 169 (251)
Q Consensus 106 iyt~sl~~ir~tc~~C~~~k~-lL~~--------~~v~~~e~dv~~~~~~~~el~~----~~g~~~~~vP~v-fi~--g~ 169 (251)
.|+++| |++|+.+.+ ++.+ ...-+..+|++..++..+.+.+ ..| ...+|.+ |++ |+
T Consensus 21 ~f~a~W------C~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~--~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 21 SIGYST------CHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTG--QGGWPLNVFLTPDLK 92 (124)
T ss_pred EEccCC------CHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcC--CCCCCEEEEECCCCC
Confidence 355665 999998754 3322 1333456677666665544433 234 6688985 553 55
Q ss_pred ee
Q psy15946 170 HI 171 (251)
Q Consensus 170 ~i 171 (251)
.+
T Consensus 93 ~~ 94 (124)
T cd02955 93 PF 94 (124)
T ss_pred EE
Confidence 55
No 463
>PF13728 TraF: F plasmid transfer operon protein
Probab=72.21 E-value=9.9 Score=32.51 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=37.1
Q ss_pred hheeeeeeecccccCCCcchHHHHHHH----HhcCCceeEEEcCCC-----HH--HHHHHHHHhCCCCCCCceEEE
Q psy15946 102 GKIVMYSTTMGIVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMS-----RE--TQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL----~~~~v~~~e~dv~~~-----~~--~~~el~~~~g~~~~~vP~vfi 166 (251)
-.+++|..+ +|++|+....+| +++|+.+..++++.. +. .-..+.+.+| ...+|.+|+
T Consensus 122 ~gL~~F~~~------~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~--v~~~Pal~L 189 (215)
T PF13728_consen 122 YGLFFFYRS------DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG--VKVTPALFL 189 (215)
T ss_pred eEEEEEEcC------CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC--CCcCCEEEE
Confidence 346777777 599999666555 677887777777521 01 1234555565 678999876
No 464
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=71.37 E-value=8.2 Score=35.93 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=35.9
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHH-------cC--CccceeeccCCHHHHHHHHHHhCCCCCCCCcee
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT-------HL--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF 87 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~~--v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~ 87 (251)
.-++.|.++| |++|+++...+.+ .+ +.+..+|.+.+.+ +.+.+ +...+|.++
T Consensus 20 ~~~v~f~a~w------C~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~i~~~Pt~~ 80 (462)
T TIGR01130 20 FVLVEFYAPW------CGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD----LAQKY--GVSGYPTLK 80 (462)
T ss_pred CEEEEEECCC------CHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH----HHHhC--CCccccEEE
Confidence 4688899998 9999998765543 33 6677777776654 44445 456688773
No 465
>PF15616 TerY-C: TerY-C metal binding domain
Probab=70.71 E-value=4.1 Score=32.26 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=27.7
Q ss_pred ccccccCCc-ceeeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946 200 TICQVCGGY-RLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 200 ~~C~~Cgg~-~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
-.|+.||.. .|+.| .|+ |++--++ .....||+|..+|-.
T Consensus 78 PgCP~CGn~~~fa~C-~CG---kl~Ci~g----~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCG---KLFCIDG----EGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCcChhcEEEe-cCC---CEEEeCC----CCCEECCCCCCeeee
Confidence 589999999 99999 565 3432122 236899999988753
No 466
>KOG0907|consensus
Probab=70.66 E-value=7.5 Score=29.44 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=35.6
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCc-----eeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCe
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVK-----FDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGV 169 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~-----~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~ 169 (251)
|+-|+++| |+-|..+.-+++++-.+ |-.+|++. -.++....+ ...+|.+ +-+|+
T Consensus 25 VvdF~a~w------CgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~--V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 25 VVDFYATW------CGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFN--VKAMPTFVFYKGGE 85 (106)
T ss_pred EEEEECCC------CcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcC--ceEeeEEEEEECCE
Confidence 34467776 99999998888776554 45677766 333444443 6788984 44554
No 467
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=70.65 E-value=5.8 Score=30.82 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=25.2
Q ss_pred CCCCCCchHHHHHHHHHH----c--CCccceeeccCCHHHHH---HHHH--HhCCCCCCCCcee
Q psy15946 35 IVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQ---EFKE--RLGTDVINVPQIF 87 (251)
Q Consensus 35 ~~~~~C~~C~~~k~~L~~----~--~v~~~e~dv~~d~~~~~---el~~--~~g~g~~~vP~i~ 87 (251)
.-+.+||+|..|.-++++ . +..+.++.|...++.++ .++. .+ .-..+|+++
T Consensus 33 ~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~--~l~~IPTLi 94 (119)
T PF06110_consen 33 TGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL--KLKGIPTLI 94 (119)
T ss_dssp TS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC-----SSSEEE
T ss_pred CCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee--eeeecceEE
Confidence 456689999999976665 2 34455556654333221 2222 11 234578886
No 468
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=69.15 E-value=15 Score=26.04 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHcCCccceeeccCCH-HH--HHHHHHHh---CCCCCCCCceeeecc
Q psy15946 41 HRCLKVKQILRTHLVKFDDKDVFMSR-ET--QQEFKERL---GTDVINVPQIFVEGV 91 (251)
Q Consensus 41 ~~C~~~k~~L~~~~v~~~e~dv~~d~-~~--~~el~~~~---g~g~~~vP~i~i~g~ 91 (251)
+.|.+++-+|+..+++|+.+.++... +. ..++.... +.-...+|++..+|.
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~ 66 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDV 66 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCE
Confidence 57889999999999999988776432 11 12222111 112357899977643
No 469
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=68.89 E-value=6.7 Score=29.43 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=19.3
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH 53 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~ 53 (251)
...|+.|..+| |+.|......|.+.
T Consensus 21 k~~vl~F~~~~------C~~C~~~~~~l~~~ 45 (123)
T cd03011 21 KPVLVYFWATW------CPVCRFTSPTVNQL 45 (123)
T ss_pred CEEEEEEECCc------ChhhhhhChHHHHH
Confidence 45778888886 99999987666654
No 470
>KOG4244|consensus
Probab=68.79 E-value=5 Score=35.53 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=48.4
Q ss_pred CCCeEEEEeecC-CCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946 22 EAGKIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE 98 (251)
Q Consensus 22 ~~~~vvvyt~~~-~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~ 98 (251)
..+.|-+|.-+- ..++.--|+|.++.-+|+-.+|+|+.++-+ ++.++ ...++|.|-+||+++.+.+.
T Consensus 42 kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~--------~~~rS--r~G~lPFIELNGe~iaDS~~ 109 (281)
T KOG4244|consen 42 KKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS--------LKRRS--RNGTLPFIELNGEHIADSDL 109 (281)
T ss_pred ccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc--------ceeec--cCCCcceEEeCCeeccccHH
Confidence 345777776551 223345689999999999999999987755 22233 34569999999999988543
No 471
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=68.24 E-value=2.8 Score=30.89 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=31.8
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHh----c---C--CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE-EECC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H---L--VKFDDKDVFMSRETQQEFKERLGTDVINVPQI-FVEG 168 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~---~--v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v-fi~g 168 (251)
++.|.++| |+.|......|++ + + +.+...|....+ .+.+..+ ..++|.+ |++|
T Consensus 19 lv~f~a~w------C~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--I~~~Pt~~l~~~ 81 (104)
T cd03000 19 LVDFYAPW------CGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS----SIASEFG--VRGYPTIKLLKG 81 (104)
T ss_pred EEEEECCC------CHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH----hHHhhcC--CccccEEEEEcC
Confidence 45677776 9999976665533 2 2 444556665544 3444454 6789996 3443
No 472
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=68.10 E-value=11 Score=27.15 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=31.0
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcC--------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL--------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~--------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi 166 (251)
-++.|.++| |+.|..+...|++.. +.+..+|.+.+ ++....+ ...+|.+++
T Consensus 21 ~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~--~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPW------CGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFV--VDGFPTILF 79 (104)
T ss_pred EEEEEECCC------CHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhcc--CCCCCEEEE
Confidence 356677786 999998776664332 44555666543 2333333 478898653
No 473
>KOG1695|consensus
Probab=67.70 E-value=16 Score=31.11 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=45.7
Q ss_pred CcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946 118 YHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179 (251)
Q Consensus 118 c~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~ 179 (251)
...++-+|.+|+-.+++|++.-+..... ..+++..+ ....+|.+-|||..|...-.+.+
T Consensus 12 RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~--pfgqlP~l~vDg~~i~QS~AI~R 70 (206)
T KOG1695|consen 12 RGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKM--PFGQLPVLEVDGKKLVQSRAILR 70 (206)
T ss_pred chhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccC--CCCCCCEEeECCEeeccHHHHHH
Confidence 4567889999999999999999876654 45555554 36789999999998876555544
No 474
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.82 E-value=11 Score=35.12 Aligned_cols=54 Identities=30% Similarity=0.375 Sum_probs=36.8
Q ss_pred CCcchHHHHHHHHhcCCc-eeEEEcC-CCHHHHHHHHHHhCCCCCCCceEEECCeeeCC
Q psy15946 117 TYHRCLKVKQILRTHLVK-FDDKDVF-MSRETQQEFKERLGTDVINVPQIFVEGVHIGD 173 (251)
Q Consensus 117 tc~~C~~~k~lL~~~~v~-~~e~dv~-~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG 173 (251)
||..|-.+.+.|.-+.|- .....+. ...-+++|..++. ...||.||+||+..|.
T Consensus 127 tC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~---IMaVPtvflnGe~fg~ 182 (520)
T COG3634 127 TCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARN---IMAVPTVFLNGEEFGQ 182 (520)
T ss_pred eccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhcc---ceecceEEEcchhhcc
Confidence 699998888888766541 1112222 2245778887663 6789999999998873
No 475
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=66.81 E-value=14 Score=32.80 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=35.3
Q ss_pred heeeeeeecccccCCCcchHHHHHHH----HhcCCceeEEEcCCCHH-------HHHHHHHHhCCCCCCCceEEE
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSRE-------TQQEFKERLGTDVINVPQIFV 166 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL----~~~~v~~~e~dv~~~~~-------~~~el~~~~g~~~~~vP~vfi 166 (251)
.++.|..+| |+.|.....+| +++++.+..++++.+.. .-..+.+..| ...+|.+|+
T Consensus 169 ~Lv~F~Asw------Cp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g--V~~vPtl~L 235 (271)
T TIGR02740 169 GLFFFFKSD------CPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLK--IRTVPAVFL 235 (271)
T ss_pred EEEEEECCC------CccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcC--CCcCCeEEE
Confidence 456677776 99999776655 55677666666654321 0123455665 788999753
No 476
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=66.81 E-value=9.4 Score=30.60 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=49.4
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCC--CCCCCCceeeecccccccccc
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGTWQEK 99 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~--g~~~vP~i~i~g~~~gG~~~~ 99 (251)
..-++++|-.| +|.=|..--+.|+.+|+++..++.+.- ..+++.+|. .-.+-=+.+|+|.++-|.-+.
T Consensus 24 ~~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d~----~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa 93 (149)
T COG3019 24 QATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDDF----LALKRRLGIPYEMQSCHTAVINGYYVEGHVPA 93 (149)
T ss_pred ceeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCcH----HHHHHhcCCChhhccccEEEEcCEEEeccCCH
Confidence 34578899888 499999999999999988877665533 335555641 224456789999999885544
No 477
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=66.40 E-value=27 Score=26.80 Aligned_cols=19 Identities=16% Similarity=0.287 Sum_probs=12.4
Q ss_pred eeeeeecccccCCCcchHHHHHHHH
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQILR 129 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~lL~ 129 (251)
+.|..+| |+.|......|+
T Consensus 22 l~F~atw------C~~C~~~~p~l~ 40 (132)
T cd02964 22 LYFSASW------CPPCRAFTPKLV 40 (132)
T ss_pred EEEECCC------CchHHHHHHHHH
Confidence 4455565 999997655543
No 478
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.26 E-value=10 Score=31.13 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=36.8
Q ss_pred eEEEEeecCCCCCCCCchHHHHHHHHHHc---------CCccceeeccCCHH------------HHHHHHHHhCCCCCCC
Q psy15946 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRE------------TQQEFKERLGTDVINV 83 (251)
Q Consensus 25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---------~v~~~e~dv~~d~~------------~~~el~~~~g~g~~~v 83 (251)
-+.||..+. |+||.+.|+.+... ++.+.+++++.+.. --+||.+.+ +.++.
T Consensus 45 lllmfes~~------C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf--~vrst 116 (182)
T COG2143 45 LLLMFESNG------CSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF--AVRST 116 (182)
T ss_pred EEEEEcCCC------ChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHh--ccccC
Confidence 588999995 99999988766531 23444555533221 134677777 57888
Q ss_pred Cceeee
Q psy15946 84 PQIFVE 89 (251)
Q Consensus 84 P~i~i~ 89 (251)
|.++.-
T Consensus 117 PtfvFf 122 (182)
T COG2143 117 PTFVFF 122 (182)
T ss_pred ceEEEE
Confidence 888643
No 479
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=66.17 E-value=6 Score=28.01 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946 40 YHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT 95 (251)
Q Consensus 40 C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG 95 (251)
.+.|.++.-+|+..|++|+.+++..... .. ....+|.+.++|+.+..
T Consensus 17 ~~~~~kv~~~L~elglpye~~~~~~~~~-------~~--P~GkVP~L~~dg~vI~e 63 (74)
T cd03079 17 NASCLAVQTFLKMCNLPFNVRCRANAEF-------MS--PSGKVPFIRVGNQIVSE 63 (74)
T ss_pred CCCHHHHHHHHHHcCCCcEEEecCCccc-------cC--CCCcccEEEECCEEEeC
Confidence 4679999999999999998876432111 11 12459999888876654
No 480
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=66.08 E-value=39 Score=24.96 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=48.9
Q ss_pred CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-ecccccccccccc
Q psy15946 23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGTWQEKEA 101 (251)
Q Consensus 23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~~~gG~~~~~~ 101 (251)
..+++||+.+ -..+..+.+.|.+.+.++..+.=..++..+..+.+.+..+ . ..+.+ -.....|.+....
T Consensus 28 ~~~~lvf~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--~-~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 28 GGKVLIFCPS-------KKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG--E-IVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCcEEEEeCc-------HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC--C-CcEEEEcChhhcCcChhhC
Confidence 4689999988 7889999999998777776666555566666666655322 2 33333 3333455554444
Q ss_pred hheeeeeee
Q psy15946 102 GKIVMYSTT 110 (251)
Q Consensus 102 ~~Vviyt~s 110 (251)
+-|+++...
T Consensus 98 ~~vi~~~~~ 106 (131)
T cd00079 98 SVVINYDLP 106 (131)
T ss_pred CEEEEeCCC
Confidence 445554443
No 481
>PRK11752 putative S-transferase; Provisional
Probab=65.65 E-value=24 Score=30.83 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=48.5
Q ss_pred cchheeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCC--CHHHHHHHHHHhCCCCCCCceEEECC---
Q psy15946 100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEG--- 168 (251)
Q Consensus 100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~--~~~~~~el~~~~g~~~~~vP~vfi~g--- 168 (251)
..+.+.+|+.. .+++.+++-+|+.. +++|+.+.|.. ......++.+.. ....||.+..++
T Consensus 41 ~~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iN--P~GkVP~Lv~~dg~~ 111 (264)
T PRK11752 41 GKHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEIN--PNSKIPALLDRSGNP 111 (264)
T ss_pred CCCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhC--CCCCCCEEEeCCCCC
Confidence 34468899854 89999999999886 78888776643 222345666664 467999998753
Q ss_pred -eeeCChHHHHH
Q psy15946 169 -VHIGDADAIER 179 (251)
Q Consensus 169 -~~iGG~d~l~~ 179 (251)
..+-....+.+
T Consensus 112 ~~~L~ES~AIl~ 123 (264)
T PRK11752 112 PIRVFESGAILL 123 (264)
T ss_pred CeEEEcHHHHHH
Confidence 45655555554
No 482
>KOG0335|consensus
Probab=65.51 E-value=53 Score=31.66 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=87.3
Q ss_pred CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccccchh
Q psy15946 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGK 103 (251)
Q Consensus 24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~~~~ 103 (251)
.++.||..+ =..|..+-.+|...+++++.+..+.....+++....+ ...+.|.++--.....|++-..-..
T Consensus 338 e~tlvFvEt-------~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~F--r~g~~pvlVaT~VaaRGlDi~~V~h 408 (482)
T KOG0335|consen 338 EKTLVFVET-------KRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDF--RNGKAPVLVATNVAARGLDIPNVKH 408 (482)
T ss_pred ceEEEEeec-------cchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHh--hcCCcceEEEehhhhcCCCCCCCce
Confidence 378888887 6899999999999999999998888777777777766 4567888887777788888776677
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC-CCCCCCceEEECCeeeCChHHHHH-HH
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG-TDVINVPQIFVEGVHIGDADAIER-LN 181 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g-~~~~~vP~vfi~g~~iGG~d~l~~-l~ 181 (251)
|+.|.-+- .+-..++.-| ++| .+....=..|+++..-..++.|.+ |.
T Consensus 409 VInyDmP~-----------d~d~YvHRIG--------------------RTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 409 VINYDMPA-----------DIDDYVHRIG--------------------RTGRVGNGGRATSFFNEKNQNIAKALVEILT 457 (482)
T ss_pred eEEeecCc-----------chhhHHHhcc--------------------ccccCCCCceeEEEeccccchhHHHHHHHHH
Confidence 77777662 1222222222 122 113344556777777777777766 33
Q ss_pred HcC-Chhhhhcc
Q psy15946 182 ESG-ELRRILKP 192 (251)
Q Consensus 182 e~G-~L~~~L~~ 192 (251)
|++ ++-.+|.+
T Consensus 458 ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 458 EANQEVPQWLSE 469 (482)
T ss_pred HhcccCcHHHHh
Confidence 333 45556655
No 483
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=65.28 E-value=8.5 Score=33.03 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=46.7
Q ss_pred heeeeeeecccccCCCcchHHHHHHHHhcCC--ceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC----ChHH
Q psy15946 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLV--KFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG----DADA 176 (251)
Q Consensus 103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v--~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG----G~d~ 176 (251)
.|.||+-. ||-.|...-+.|++.|. .++.+|-...+.. .++ ...-++|-||+||+.+- +.++
T Consensus 12 ~VkI~~Hk------tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~--~~~----~~V~SvP~Vf~DGel~~~dpVdp~~ 79 (265)
T COG5494 12 EVKIFTHK------TCVSSYMLFEYLENKGLLGKVKIIDAELPPFL--AFE----KGVISVPSVFIDGELVYADPVDPEE 79 (265)
T ss_pred EEEEEEec------chHHHHHHHHHHHhcCCCCCceEEEcCCChHH--Hhh----cceeecceEEEcCeEEEcCCCCHHH
Confidence 47788776 79999999999999876 3555665544321 111 12578999999999653 4566
Q ss_pred HHHHHH
Q psy15946 177 IERLNE 182 (251)
Q Consensus 177 l~~l~e 182 (251)
+..+.+
T Consensus 80 ies~~~ 85 (265)
T COG5494 80 IESILS 85 (265)
T ss_pred HHHHHc
Confidence 666653
No 484
>PHA00626 hypothetical protein
Probab=64.46 E-value=6 Score=26.54 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=11.6
Q ss_pred cccccCCcceeeCCCCCC
Q psy15946 201 ICQVCGGYRLLPCSLCNG 218 (251)
Q Consensus 201 ~C~~Cgg~~~~~C~~C~g 218 (251)
.|+.||-.-.+.|..|.+
T Consensus 2 ~CP~CGS~~Ivrcg~cr~ 19 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRG 19 (59)
T ss_pred CCCCCCCceeeeeceecc
Confidence 466666666666666666
No 485
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=64.20 E-value=4.6 Score=24.55 Aligned_cols=28 Identities=14% Similarity=0.424 Sum_probs=15.9
Q ss_pred eCCCCCCCceeeecccccccccceeCCCCCc
Q psy15946 212 PCSLCNGSKKSVHRNHFTTELVALKCMNCDE 242 (251)
Q Consensus 212 ~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cne 242 (251)
.|+.|+-.-..+... .+.....||.|..
T Consensus 7 ~C~~Cg~~fe~~~~~---~~~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKI---SDDPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEec---CCCCCCCCCCCCC
Confidence 467776654333211 1134678999987
No 486
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=62.79 E-value=12 Score=29.44 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=27.2
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHH----HHc----CCccceeeccCCHH
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQIL----RTH----LVKFDDKDVFMSRE 67 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L----~~~----~v~~~e~dv~~d~~ 67 (251)
+...|++|+-.. ||+|.++-..+ ++. .+.|..+++..+..
T Consensus 12 a~~~v~~f~d~~------Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 12 APITVTEFFDFQ------CPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp TSEEEEEEE-TT------SHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred CCeEEEEEECCC------CHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 355899999995 99999875554 333 46677777755554
No 487
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=62.55 E-value=18 Score=35.54 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=35.2
Q ss_pred eeeeeecccccCCCcchHHHHHH-H------Hh-cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE
Q psy15946 105 VMYSTTMGIVRDTYHRCLKVKQI-L------RT-HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF 165 (251)
Q Consensus 105 viyt~sl~~ir~tc~~C~~~k~l-L------~~-~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf 165 (251)
+-|+.+| |+.|+.+... + +. .++.+..+|++.+.+..+++.+..+ ...+|.++
T Consensus 479 VdF~A~W------C~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~--v~g~Pt~~ 539 (571)
T PRK00293 479 LDLYADW------CVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN--VLGLPTIL 539 (571)
T ss_pred EEEECCc------CHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC--CCCCCEEE
Confidence 4577776 9999987553 2 11 2456677888766555556666665 77899864
No 488
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=62.49 E-value=5.4 Score=39.12 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=30.1
Q ss_pred CccccccCCccee----eCCCCCCCceeeecccccccccc---eeCCCCCcccc
Q psy15946 199 CTICQVCGGYRLL----PCSLCNGSKKSVHRNHFTTELVA---LKCMNCDEVGL 245 (251)
Q Consensus 199 ~~~C~~Cgg~~~~----~C~~C~gs~k~~~~~~~~~~~~~---~~C~~Cnengl 245 (251)
..+|..|.|.|-| .|+.|+|+-|++....-...... --|+.|-.|+-
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc
Confidence 4589999998865 69999999998744321111111 13777766553
No 489
>PRK02935 hypothetical protein; Provisional
Probab=62.06 E-value=5.2 Score=30.37 Aligned_cols=25 Identities=24% Similarity=0.591 Sum_probs=20.4
Q ss_pred eeCCCCCCCceeeecccccccccceeCCCCCcc
Q psy15946 211 LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEV 243 (251)
Q Consensus 211 ~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnen 243 (251)
|.||.|+--.|.+ +++-.|..|||.
T Consensus 71 V~CP~C~K~TKmL--------GrvD~CM~C~~P 95 (110)
T PRK02935 71 VICPSCEKPTKML--------GRVDACMHCNQP 95 (110)
T ss_pred eECCCCCchhhhc--------cceeecCcCCCc
Confidence 7999999998875 345689999984
No 490
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=62.00 E-value=7.5 Score=43.23 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=33.9
Q ss_pred eeCChHHHHHHHHcCChhhhhccCCC-----CCCCccccccCCcce------------eeCCCCCCCcee
Q psy15946 170 HIGDADAIERLNESGELRRILKPYKS-----PDACTICQVCGGYRL------------LPCSLCNGSKKS 222 (251)
Q Consensus 170 ~iGG~d~l~~l~e~G~L~~~L~~~~~-----~~~~~~C~~Cgg~~~------------~~C~~C~gs~k~ 222 (251)
|+|=+|++.+|+.+=...+ ..++.. ..+.+.|+.|.|.|. ++|+.|+|++..
T Consensus 1574 Y~g~fd~IR~lFA~~~~ak-~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1574 YFDIAPSLRNFYASLTQAK-ALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred hhhhHHHHHHHHhcCHHHH-HcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 5556888888885532222 122221 124678999999996 489999998654
No 491
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=61.99 E-value=5.1 Score=23.86 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=12.5
Q ss_pred eeCCCCCCCceeeecccccccccceeCCCCC
Q psy15946 211 LPCSLCNGSKKSVHRNHFTTELVALKCMNCD 241 (251)
Q Consensus 211 ~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cn 241 (251)
..|+.|++..-.. .+...+.|+.|.
T Consensus 4 ~~C~~C~~~~i~~------~~~~~~~C~~Cg 28 (33)
T PF08792_consen 4 KKCSKCGGNGIVN------KEDDYEVCIFCG 28 (33)
T ss_pred eEcCCCCCCeEEE------ecCCeEEcccCC
Confidence 3566666654221 112346777775
No 492
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=61.86 E-value=8.5 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.559 Sum_probs=20.0
Q ss_pred eCCCCCCCceeee----cccccccccceeCCCCCc
Q psy15946 212 PCSLCNGSKKSVH----RNHFTTELVALKCMNCDE 242 (251)
Q Consensus 212 ~C~~C~gs~k~~~----~~~~~~~~~~~~C~~Cne 242 (251)
+|+.|++..-++. +...+....+-.|..|+.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~ 36 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGH 36 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCC
Confidence 6999976655542 223333456899999974
No 493
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=61.73 E-value=6.6 Score=24.15 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=18.2
Q ss_pred eeCCCCCCCceeeec----ccccccccceeCCCCCc
Q psy15946 211 LPCSLCNGSKKSVHR----NHFTTELVALKCMNCDE 242 (251)
Q Consensus 211 ~~C~~C~gs~k~~~~----~~~~~~~~~~~C~~Cne 242 (251)
+.|+.|+...-++.. ...+....+.+|.+|+.
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~ 36 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGH 36 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCC
Confidence 469999887655532 22333346889999975
No 494
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=61.10 E-value=7 Score=41.61 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=15.3
Q ss_pred CccccccCCcc-eeeCCCCCCCce
Q psy15946 199 CTICQVCGGYR-LLPCSLCNGSKK 221 (251)
Q Consensus 199 ~~~C~~Cgg~~-~~~C~~C~gs~k 221 (251)
...|..||..- ..-|+.|..+..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te 690 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTE 690 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCC
Confidence 46788888642 247888877743
No 495
>KOG2324|consensus
Probab=60.98 E-value=6.2 Score=36.59 Aligned_cols=37 Identities=35% Similarity=0.602 Sum_probs=23.6
Q ss_pred CCcceeeCCCCCCCceeeeccccccccc-ceeCCCCCcccccc
Q psy15946 206 GGYRLLPCSLCNGSKKSVHRNHFTTELV-ALKCMNCDEVGLVK 247 (251)
Q Consensus 206 gg~~~~~C~~C~gs~k~~~~~~~~~~~~-~~~C~~Cnengl~~ 247 (251)
|.....-|+.|+=|+.+= .-+.. --.||+||||-|.+
T Consensus 223 gED~l~~C~~C~~s~n~e-----~~~~sk~~~Cp~C~~~~L~~ 260 (457)
T KOG2324|consen 223 GEDTLMSCPSCGYSKNSE-----DLDLSKIASCPKCNEGRLTK 260 (457)
T ss_pred CccceeecCcCCccCchh-----hhcCCccccCCcccCCCccc
Confidence 345677888888776541 11111 26899999987754
No 496
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=60.96 E-value=16 Score=30.68 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=34.9
Q ss_pred eeeeeeecccccCCCcchHHHHHHHHhcC-----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeC
Q psy15946 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG 172 (251)
Q Consensus 104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~-----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iG 172 (251)
||-|+.+| |+.|..+..+|+.+- ++|..+|++.. .+..+ ...+|.+ |-+|+.++
T Consensus 106 VV~Fya~w------c~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~--i~~lPTlliyk~G~~v~ 166 (192)
T cd02988 106 VVHLYKDG------IPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYP--DKNLPTILVYRNGDIVK 166 (192)
T ss_pred EEEEECCC------CchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCC--CCCCCEEEEEECCEEEE
Confidence 34466665 999998888775543 56777776421 23443 7789985 56887553
No 497
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=60.81 E-value=2.6 Score=29.29 Aligned_cols=35 Identities=20% Similarity=0.599 Sum_probs=19.9
Q ss_pred eCCCCCCC-ceeeecccccccccceeCCCCCccccc
Q psy15946 212 PCSLCNGS-KKSVHRNHFTTELVALKCMNCDEVGLV 246 (251)
Q Consensus 212 ~C~~C~gs-~k~~~~~~~~~~~~~~~C~~Cnengl~ 246 (251)
.|..|+.. .+.+-...+....+.++||.|+..=|+
T Consensus 6 TC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~HlI 41 (66)
T PF05180_consen 6 TCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRHLI 41 (66)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EEES
T ss_pred EcCCCCCccceeeCHHHHhCCeEEEECCCCcceeee
Confidence 46777654 344444445566678999999876554
No 498
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=60.57 E-value=6.1 Score=26.70 Aligned_cols=32 Identities=38% Similarity=0.869 Sum_probs=27.4
Q ss_pred ccccccCCccee-eCCCCCCCceeeeccccccc
Q psy15946 200 TICQVCGGYRLL-PCSLCNGSKKSVHRNHFTTE 231 (251)
Q Consensus 200 ~~C~~Cgg~~~~-~C~~C~gs~k~~~~~~~~~~ 231 (251)
..|..||-+-+- .|+.|.|..++.|-.+|+-+
T Consensus 6 rkC~~cg~YTLke~Cp~CG~~t~~~~PprFSPe 38 (59)
T COG2260 6 RKCPKCGRYTLKEKCPVCGGDTKVPHPPRFSPE 38 (59)
T ss_pred hcCcCCCceeecccCCCCCCccccCCCCCCCcc
Confidence 468889999888 99999999999888888754
No 499
>PTZ00102 disulphide isomerase; Provisional
Probab=59.94 E-value=14 Score=34.76 Aligned_cols=55 Identities=7% Similarity=0.122 Sum_probs=35.7
Q ss_pred CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcC--------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946 22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL--------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV 88 (251)
Q Consensus 22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~--------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i 88 (251)
..+-++.|.++| |++|+.....|++.. +.+..+|.+.+... .+.+ +...+|.+++
T Consensus 375 ~k~vlv~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~--~v~~~Pt~~~ 437 (477)
T PTZ00102 375 DKDVLLEIYAPW------CGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEF--SWSAFPTILF 437 (477)
T ss_pred CCCEEEEEECCC------CHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcC--CCcccCeEEE
Confidence 345788888898 999999988877632 34555566554432 2223 3566898864
No 500
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=59.52 E-value=29 Score=26.79 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=30.3
Q ss_pred CCeEEEEeec-CCCCCCCCchHHHHHHHHH-------HcCCccceeeccCCHHHHHHHH
Q psy15946 23 AGKIVMYSTT-MGIVRDTYHRCLKVKQILR-------THLVKFDDKDVFMSRETQQEFK 73 (251)
Q Consensus 23 ~~~vvvyt~~-~~~~~~~C~~C~~~k~~L~-------~~~v~~~e~dv~~d~~~~~el~ 73 (251)
...|+.|..+ | ||+|....-.|. ..++.+..+....++...+.+.
T Consensus 29 k~~vv~f~~~~~------Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~ 81 (146)
T PF08534_consen 29 KPVVVNFWASAW------CPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLK 81 (146)
T ss_dssp SEEEEEEESTTT------SHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHH
T ss_pred CeEEEEEEccCC------CCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHH
Confidence 4457777778 8 999997654433 3567777777888887433333
Done!