RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15946
(251 letters)
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK;
glutaredoxin, thioredoxin fold, protein 3D-structure,
X-RAY crystallography; 1.60A {Mus musculus} SCOP:
c.47.1.14 PDB: 1j0f_A 1sj6_A
Length = 93
Score = 93.7 bits (233), Expect = 6e-25
Identities = 19/89 (21%), Positives = 36/89 (40%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
+ +YST++ R+ + +V +IL +++ D+ + E + G P
Sbjct: 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 62
Query: 163 QIFVEGVHIGDADAIERLNESGELRRILK 191
QI + GD + E L+ LK
Sbjct: 63 QIVNGNHYCGDYELFVEAVEQDTLQEFLK 91
Score = 73.7 bits (181), Expect = 2e-17
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
+ +YST++ R+ + +V +IL +++ D+ + E + G P
Sbjct: 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 62
Query: 85 QIFVEGVHIGTWQE----KEAGK 103
QI + G ++ E
Sbjct: 63 QIVNGNHYCGDYELFVEAVEQDT 85
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding,
glutaredoxin, thioredoxin fold, crystallography, protein
binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Length = 121
Score = 88.9 bits (220), Expect = 1e-22
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN--- 160
I +Y + + V L + + F++KD+ + E ++ +E + +
Sbjct: 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATG 61
Query: 161 ---VPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDA 198
PQIF E + GD DA E+ + L P +
Sbjct: 62 YPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPPGS 102
Score = 67.7 bits (165), Expect = 1e-14
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN--- 82
I +Y + + V L + + F++KD+ + E ++ +E + +
Sbjct: 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATG 61
Query: 83 ---VPQIFVEGVHIGTWQE----KEAGKI 104
PQIF E + G + +E +
Sbjct: 62 YPLPPQIFNESQYRGDYDAFFEARENNAV 90
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2;
SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 111
Score = 86.5 bits (214), Expect = 5e-22
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN--- 160
I ++ + + V + L + ++F++ D+ MS E +Q + + +
Sbjct: 10 IRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQG 69
Query: 161 ---VPQIFVEGVHIGDADAIERLNESGELRRILK 191
PQIF + GD D+ ES + L
Sbjct: 70 NPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLG 103
Score = 66.5 bits (162), Expect = 2e-14
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN--- 82
I ++ + + V + L + ++F++ D+ MS E +Q + + +
Sbjct: 10 IRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQG 69
Query: 83 ---VPQIFVEGVHIGTWQE----KEAGKI 104
PQIF + G + KE+ +
Sbjct: 70 NPLPPQIFNGDRYCGDYDSFFESKESNTV 98
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 59.9 bits (146), Expect = 4e-12
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVIN 160
+++Y+ Y C + K +L +F++ D + E + E +ER G T
Sbjct: 7 DVIIYTRPGC----PY--CARAKALLARKGAEFNEIDASATPELRAEMQERSGRNT---- 56
Query: 161 VPQIFVEGVHIGDADAIERLNESGELRRILK 191
PQIF+ VH+G D + L + G+L +LK
Sbjct: 57 FPQIFIGSVHVGGCDDLYALEDEGKLDSLLK 87
Score = 47.2 bits (113), Expect = 1e-07
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVIN 82
+++Y+ Y C + K +L +F++ D + E + E +ER G T
Sbjct: 7 DVIIYTRPGC----PY--CARAKALLARKGAEFNEIDASATPELRAEMQERSGRNT---- 56
Query: 83 VPQIFVEGVHIG 94
PQIF+ VH+G
Sbjct: 57 FPQIFIGSVHVG 68
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 59.5 bits (145), Expect = 4e-12
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVIN 160
+ +Y+ Y C + K +L + V F + + + ++E +R G T
Sbjct: 2 NVEIYTKETCP----Y--CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTT---- 51
Query: 161 VPQIFVEGVHIGDADAIERLNESGELRRILK 191
VPQIF++ HIG D + L+ G L +LK
Sbjct: 52 VPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
Score = 46.8 bits (112), Expect = 2e-07
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVIN 82
+ +Y+ Y C + K +L + V F + + + ++E +R G T
Sbjct: 2 NVEIYTKETCP----Y--CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTT---- 51
Query: 83 VPQIFVEGVHIG 94
VPQIF++ HIG
Sbjct: 52 VPQIFIDAQHIG 63
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 59.6 bits (145), Expect = 5e-12
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 91 VHIGTWQEKEAGKIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQE 149
H + KI +Y+ + + C++ +L+ V+F + + E ++
Sbjct: 5 HHHHHHGSAVSAKIEIYTWSTCP-----F--CMRALALLKRKGVEFQEYCIDGDNEAREA 57
Query: 150 FKERLG---TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
R + +PQIF++ HIG D I L+ +G+L +L
Sbjct: 58 MAARANGKRS----LPQIFIDDQHIGGCDDIYALDGAGKLDPLLH 98
Score = 46.1 bits (110), Expect = 5e-07
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 25 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG---TDV 80
KI +Y+ + + C++ +L+ V+F + + E ++ R +
Sbjct: 17 KIEIYTWSTCP-----F--CMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRS-- 67
Query: 81 INVPQIFVEGVHIG 94
+PQIF++ HIG
Sbjct: 68 --LPQIFIDDQHIG 79
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 52.2 bits (126), Expect = 2e-09
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 103 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG---TDV 158
+I++Y+ Y C + + +L VK+ D D S +QE +R T
Sbjct: 7 EIILYTRPNCP-----Y--CKRARDLLDKKGVKYTDIDA--STSLRQEMVQRANGRNT-- 55
Query: 159 INVPQIFVEGVHIGDADAIERLNESGELRRILK 191
PQIF+ H+G D + L G+L +L+
Sbjct: 56 --FPQIFIGDYHVGGCDDLYALENKGKLDSLLQ 86
Score = 39.5 bits (93), Expect = 7e-05
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 25 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG---TDV 80
+I++Y+ Y C + + +L VK+ D D S +QE +R T
Sbjct: 7 EIILYTRPNCP-----Y--CKRARDLLDKKGVKYTDIDA--STSLRQEMVQRANGRNT-- 55
Query: 81 INVPQIFVEGVHIG 94
PQIF+ H+G
Sbjct: 56 --FPQIFIGDYHVG 67
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 52.3 bits (126), Expect = 4e-09
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 22/99 (22%)
Query: 103 KIVMYSTTMGIVRDT--YHRCLKVKQILRTHLVKFDDKDVFM------SRETQQEFKERL 154
K+ ++ T + C IL K ++ E + F++
Sbjct: 20 KVTIFVKY------TCPF--CRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT 71
Query: 155 G--TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
G T VP+IF IG + ++ L IL
Sbjct: 72 GGKT----VPRIFFGKTSIGGYSDLLEIDNMDALGDILS 106
Score = 38.8 bits (91), Expect = 2e-04
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 22/80 (27%)
Query: 25 KIVMYSTTMGIVRDT--YHRCLKVKQILRTHLVKFDDKDVFM------SRETQQEFKERL 76
K+ ++ T + C IL K ++ E + F++
Sbjct: 20 KVTIFVKY------TCPF--CRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT 71
Query: 77 G--TDVINVPQIFVEGVHIG 94
G T VP+IF IG
Sbjct: 72 GGKT----VPRIFFGKTSIG 87
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 51.9 bits (125), Expect = 6e-09
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 17/95 (17%)
Query: 103 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLG--T 156
+V++S T G C +VKQ+L + ++ + Q G T
Sbjct: 21 PVVVFSKTYCGY-------CNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGT 73
Query: 157 DVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
VP +F+ G IG D + ++ EL +L+
Sbjct: 74 ----VPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104
Score = 39.2 bits (92), Expect = 1e-04
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 17/76 (22%)
Query: 25 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLG--T 78
+V++S T G C +VKQ+L + ++ + Q G T
Sbjct: 21 PVVVFSKTYCGY-------CNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGT 73
Query: 79 DVINVPQIFVEGVHIG 94
VP +F+ G IG
Sbjct: 74 ----VPNVFIGGKQIG 85
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 51.5 bits (124), Expect = 7e-09
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 103 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFD--DKDVFMSRETQQEFKERLG---T 156
++V++S + + +VK++ + V+ + + D QE + T
Sbjct: 18 RVVIFSKSYCP-----H--STRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKT 70
Query: 157 DVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
VP IFV VH+G D + +SG L+++L+
Sbjct: 71 ----VPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101
Score = 37.6 bits (88), Expect = 6e-04
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 25 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFD--DKDVFMSRETQQEFKERLG---T 78
++V++S + + +VK++ + V+ + + D QE + T
Sbjct: 18 RVVIFSKSYCP-----H--STRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKT 70
Query: 79 DVINVPQIFVEGVHIG 94
VP IFV VH+G
Sbjct: 71 ----VPNIFVNKVHVG 82
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 51.0 bits (123), Expect = 8e-09
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 20/98 (20%)
Query: 103 KIVMYSTTM-GIVRDTYHRCLKVKQILR-----THLVKFDDKDVFMSRETQQEFKERLG- 155
K+V++ + C K +++L L++F D Q++ ++L
Sbjct: 13 KVVVFIKPTCP-----F--CRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65
Query: 156 --TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
T VP++F+ IG +E +++ GEL L+
Sbjct: 66 ART----VPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99
Score = 36.4 bits (85), Expect = 0.001
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 20/79 (25%)
Query: 25 KIVMYSTTM-GIVRDTYHRCLKVKQILR-----THLVKFDDKDVFMSRETQQEFKERLG- 77
K+V++ + C K +++L L++F D Q++ ++L
Sbjct: 13 KVVVFIKPTCP-----F--CRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65
Query: 78 --TDVINVPQIFVEGVHIG 94
T VP++F+ IG
Sbjct: 66 ART----VPRVFIGKECIG 80
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 51.1 bits (123), Expect = 8e-09
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 103 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD----DKDVFMSRETQQEFKERLG 155
+V+YS T C +VK + + V+ D+ + Q+ + G
Sbjct: 20 TVVIYSKTWCSY---------CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTG 70
Query: 156 --TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
T VP +FV G HIG +LN G+L +L
Sbjct: 71 QHT----VPNVFVCGKHIGGCTDTVKLNRKGDLELMLA 104
Score = 38.4 bits (90), Expect = 3e-04
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 22/79 (27%)
Query: 25 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD----DKDVFMSRETQQEFKERLG 77
+V+YS T C +VK + + V+ D+ + Q+ + G
Sbjct: 20 TVVIYSKTWCSY---------CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTG 70
Query: 78 --TDVINVPQIFVEGVHIG 94
T VP +FV G HIG
Sbjct: 71 QHT----VPNVFVCGKHIG 85
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion,
redox-activ transit peptide, transport, oxidoreductase;
1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A
3d5j_A*
Length = 129
Score = 51.2 bits (123), Expect = 1e-08
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 25/103 (24%)
Query: 103 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-------SRETQQEFKE 152
++ + + T C L L K + + E Q +E
Sbjct: 38 EVFVAAKTYCPY---------CKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 88
Query: 153 RLG--TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPY 193
G T VP +++ G HIG +E L ++G+L ILKP
Sbjct: 89 ISGQKT----VPNVYINGKHIGGNSDLETLKKNGKLAEILKPV 127
Score = 35.0 bits (81), Expect = 0.006
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 25/82 (30%)
Query: 25 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-------SRETQQEFKE 74
++ + + T C L L K + + E Q +E
Sbjct: 38 EVFVAAKTYCPY---------CKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 88
Query: 75 RLG--TDVINVPQIFVEGVHIG 94
G T VP +++ G HIG
Sbjct: 89 ISGQKT----VPNVYINGKHIG 106
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 50.0 bits (120), Expect = 3e-08
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 21/97 (21%)
Query: 103 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD--DKDVFMSRETQQEFKERLG-- 155
+V++S T C K++ V + + D+ Q+ ++
Sbjct: 28 CVVIFSKTSCSY---------CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGE 78
Query: 156 -TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
T VP+IFV G IG A RL++ G+L ++
Sbjct: 79 RT----VPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111
Score = 36.9 bits (86), Expect = 0.001
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 21/78 (26%)
Query: 25 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD--DKDVFMSRETQQEFKERLG-- 77
+V++S T C K++ V + + D+ Q+ ++
Sbjct: 28 CVVIFSKTSCSY---------CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGE 78
Query: 78 -TDVINVPQIFVEGVHIG 94
T VP+IFV G IG
Sbjct: 79 RT----VPRIFVNGTFIG 92
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 49.7 bits (119), Expect = 4e-08
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVF------MSRETQQEFKERLG- 155
I+++S + +Y +K++L + + E Q+ K G
Sbjct: 15 PIIIFSKST----CSY--SKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGR 68
Query: 156 -TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
T VP + V GV G + I++L+ G+L L+
Sbjct: 69 GT----VPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101
Score = 35.8 bits (83), Expect = 0.003
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 18/78 (23%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVF------MSRETQQEFKERLG- 77
I+++S + +Y +K++L + + E Q+ K G
Sbjct: 15 PIIIFSKST----CSY--SKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGR 68
Query: 78 -TDVINVPQIFVEGVHIG 94
T VP + V GV G
Sbjct: 69 GT----VPNLLVNGVSRG 82
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron
transport, redox-active center, transport; HET: MES;
2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Length = 118
Score = 49.6 bits (119), Expect = 4e-08
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 21/100 (21%)
Query: 103 KIVMYS-TTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFM-SRETQQEFKERL 154
+I + S T Y C L L V + + Q E
Sbjct: 26 EIFVASKTYCP-----Y--CHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN 78
Query: 155 G--TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKP 192
G T VP I++ G HIG D ++ L E+GEL +L+P
Sbjct: 79 GQRT----VPNIYINGKHIGGNDDLQELRETGELEELLEP 114
Score = 35.0 bits (81), Expect = 0.005
Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 21/80 (26%)
Query: 25 KIVMYS-TTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFM-SRETQQEFKERL 76
+I + S T Y C L L V + + Q E
Sbjct: 26 EIFVASKTYCP-----Y--CHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN 78
Query: 77 G--TDVINVPQIFVEGVHIG 94
G T VP I++ G HIG
Sbjct: 79 GQRT----VPNIYINGKHIG 94
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB:
2fls_A*
Length = 146
Score = 49.4 bits (118), Expect = 7e-08
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 103 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD----DKDVFMSRETQQEFKERLG 155
+V++S T C K++ V + D + + + Q + G
Sbjct: 50 CVVIFSKTSCSY---------CTMAKKLFHDMNVNYKVVELDLLEYGN-QFQDALYKMTG 99
Query: 156 --TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
T VP+IFV G IG A RL++ G+L ++
Sbjct: 100 ERT----VPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133
Score = 35.9 bits (83), Expect = 0.004
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 23/79 (29%)
Query: 25 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD----DKDVFMSRETQQEFKERLG 77
+V++S T C K++ V + D + + + Q + G
Sbjct: 50 CVVIFSKTSCSY---------CTMAKKLFHDMNVNYKVVELDLLEYGN-QFQDALYKMTG 99
Query: 78 --TDVINVPQIFVEGVHIG 94
T VP+IFV G IG
Sbjct: 100 ERT----VPRIFVNGTFIG 114
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 47.2 bits (113), Expect = 1e-07
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTD 157
+ V++ + Y C++ K + ++ D+ T+++ +++ G
Sbjct: 2 QTVIFGRSGCP----Y--CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKP 55
Query: 158 VINVPQIFVEGVHIGDADAIERLNE 182
V VPQIFV+ HIG +
Sbjct: 56 VETVPQIFVDQQHIGGYTDFAAWVK 80
Score = 45.7 bits (109), Expect = 4e-07
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTD 79
+ V++ + Y C++ K + ++ D+ T+++ +++ G
Sbjct: 2 QTVIFGRSGCP----Y--CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKP 55
Query: 80 VINVPQIFVEGVHIG 94
V VPQIFV+ HIG
Sbjct: 56 VETVPQIFVDQQHIG 70
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 46.3 bits (109), Expect = 4e-06
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 121 CLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDA 174
L L V + Q + VP I++ G HIG
Sbjct: 274 SHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI-NGQRTVPNIYINGKHIGGN 332
Query: 175 DAIERLNESGELRRILK 191
D ++ L E+GEL +L+
Sbjct: 333 DDLQELRETGELEELLE 349
Score = 30.8 bits (69), Expect = 0.40
Identities = 11/58 (18%), Positives = 15/58 (25%), Gaps = 7/58 (12%)
Query: 43 CLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 94
L L V + Q + VP I++ G HIG
Sbjct: 274 SHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI-NGQRTVPNIYINGKHIG 330
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: c.47.1.1
Length = 109
Score = 43.4 bits (103), Expect = 5e-06
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
++ +IL + V+++ D+ E +Q K ++ PQ++V G +G D ++ L +
Sbjct: 35 QILEILNSTGVEYETFDILEDEEVRQGLKTF--SNWPTYPQLYVRGDLVGGLDIVKELKD 92
Query: 183 SGELRRILK 191
+GEL ILK
Sbjct: 93 NGELLPILK 101
Score = 28.8 bits (65), Expect = 0.74
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 45 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 94
++ +IL + V+++ D+ E +Q K ++ PQ++V G +G
Sbjct: 35 QILEILNSTGVEYETFDILEDEEVRQGLKTF--SNWPTYPQLYVRGDLVG 82
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL
redox-active center, transit peptide, transport,
oxidoreduc; 2.40A {Arabidopsis thaliana}
Length = 109
Score = 43.0 bits (102), Expect = 6e-06
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
V QIL+ V F+D ++ + +Q KE ++ PQ+++ G G D +
Sbjct: 38 TVVQILKNLNVPFEDVNILENEMLRQGLKEY--SNWPTFPQLYIGGEFFGGCDITLEAFK 95
Query: 183 SGELRRILK 191
+GEL+ ++
Sbjct: 96 TGELQEEVE 104
Score = 28.4 bits (64), Expect = 0.97
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 45 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 94
V QIL+ V F+D ++ + +Q KE ++ PQ+++ G G
Sbjct: 38 TVVQILKNLNVPFEDVNILENEMLRQGLKEY--SNWPTFPQLYIGGEFFG 85
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Length = 105
Score = 42.6 bits (101), Expect = 9e-06
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
++ +IL + V+++ D+ E +Q K ++ PQ++V+G +G D ++ L E
Sbjct: 37 QILEILNSTGVEYETFDILEDEEVRQGLKAY--SNWPTYPQLYVKGELVGGLDIVKELKE 94
Query: 183 SGELRRILK 191
+GEL IL+
Sbjct: 95 NGELLPILR 103
Score = 27.6 bits (62), Expect = 1.7
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 45 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 94
++ +IL + V+++ D+ E +Q K ++ PQ++V+G +G
Sbjct: 37 QILEILNSTGVEYETFDILEDEEVRQGLKAY--SNWPTYPQLYVKGELVG 84
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Length = 111
Score = 42.2 bits (100), Expect = 1e-05
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
++ +IL H ++F D+F E +Q K + PQ++V G IG D I+ L
Sbjct: 36 QMVEILHKHNIQFSSFDIFSDEEVRQGLKAY--SSWPTYPQLYVSGELIGGLDIIKELEA 93
Query: 183 SGELRRILK 191
S EL I
Sbjct: 94 SEELDTICP 102
Score = 28.0 bits (63), Expect = 1.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 45 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 94
++ +IL H ++F D+F E +Q K + PQ++V G IG
Sbjct: 36 QMVEILHKHNIQFSSFDIFSDEEVRQGLKAY--SSWPTYPQLYVSGELIG 83
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 41.1 bits (97), Expect = 1e-05
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
+I +Y+ + +C K+ + F+ +V E + + G +P
Sbjct: 2 RITIYTR------NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QG--FRQLP 52
Query: 163 QIFVEGVHIG--DADAIERLNESGELR 187
+ + D I RL+ +
Sbjct: 53 VVIAGDLSWSGFRPDMINRLHPAPHAA 79
Score = 37.3 bits (87), Expect = 4e-04
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
+I +Y+ + +C K+ + F+ +V E + + G +P
Sbjct: 2 RITIYTR------NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QG--FRQLP 52
Query: 85 QIFVEGVHIG 94
+ +
Sbjct: 53 VVIAGDLSWS 62
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 41.1 bits (97), Expect = 2e-05
Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 20/94 (21%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERLGTDVIN- 160
+++MY T C + + L+ V F+ + + E +++ E++ I+
Sbjct: 13 EVLMYGL------STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKV--HSISG 64
Query: 161 ---VPQIFVEGVHIGDADAIERLNESGELRRILK 191
VP + H+ + +L+ +++
Sbjct: 65 SYSVPVVVKGDKHVLGYN-------EEKLKELIR 91
Score = 38.8 bits (91), Expect = 1e-04
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERLGTDVIN- 82
+++MY T C + + L+ V F+ + + E +++ E++ I+
Sbjct: 13 EVLMYGL------STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKV--HSISG 64
Query: 83 ---VPQIFVEGVHIG 94
VP + H+
Sbjct: 65 SYSVPVVVKGDKHVL 79
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster
scaffolder, Fe2S2, homodimer, transport, glutathione,
thioredoxin fold; HET: GSH; 1.90A {Escherichia coli}
PDB: 1yka_A
Length = 135
Score = 41.3 bits (97), Expect = 5e-05
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
+ Q L +F D+ + + + E + + PQ++V+G +G D + + +
Sbjct: 55 QAVQALAACGERFAYVDILQNPDIRAELPKY--ANWPTFPQLWVDGELVGGCDIVIEMYQ 112
Query: 183 SGELRRILK 191
GEL++++K
Sbjct: 113 RGELQQLIK 121
Score = 27.0 bits (60), Expect = 3.9
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 45 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG 94
+ Q L +F D+ + + + E + + PQ++V+G +G
Sbjct: 55 QAVQALAACGERFAYVDILQNPDIRAELPKY--ANWPTFPQLWVDGELVG 102
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics
of infec diseases, csgid, oxidoreductase; HET: GSH;
2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Length = 89
Score = 40.0 bits (94), Expect = 5e-05
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN-- 82
K+ +Y+ Y C+ KQ + + FD+ + + +F + +
Sbjct: 5 KVKIYTRNGCP----Y--CVWAKQWFEENNIAFDETIIDDY-AQRSKFYDEMNQSGKVIF 57
Query: 83 ----VPQIFVEGVHIGTWQEKEA 101
VPQIF++ HIG + E +A
Sbjct: 58 PISTVPQIFIDDEHIGGFTELKA 80
Score = 39.6 bits (93), Expect = 7e-05
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN-- 160
K+ +Y+ Y C+ KQ + + FD+ + + +F + +
Sbjct: 5 KVKIYTRNGCP----Y--CVWAKQWFEENNIAFDETIIDDY-AQRSKFYDEMNQSGKVIF 57
Query: 161 ----VPQIFVEGVHIGDAD 175
VPQIF++ HIG
Sbjct: 58 PISTVPQIFIDDEHIGGFT 76
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 39.1 bits (92), Expect = 7e-05
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
I +Y+ +C K+ L + ++ D+ + E + LG + P
Sbjct: 2 SITLYTK------PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LG--YVQAP 52
Query: 163 QIFVEGVHIG--DADAIERLNES 183
+ V+G H + I++L +
Sbjct: 53 VVEVDGEHWSGFRPERIKQLQAA 75
Score = 36.1 bits (84), Expect = 0.001
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
I +Y+ +C K+ L + ++ D+ + E + LG + P
Sbjct: 2 SITLYTK------PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LG--YVQAP 52
Query: 85 QIFVEGVHIG 94
+ V+G H
Sbjct: 53 VVEVDGEHWS 62
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 39.3 bits (92), Expect = 1e-04
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL--G 77
+ GK++MY + T C K K++L V FD V + + ++E E +
Sbjct: 19 VDRGKVIMYGLS------TCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRF 72
Query: 78 TDVINVPQIFVEGVHI 93
++ P +
Sbjct: 73 NPSVSFPTTIINDEKA 88
Score = 39.3 bits (92), Expect = 1e-04
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL--G 155
+ GK++MY + T C K K++L V FD V + + ++E E +
Sbjct: 19 VDRGKVIMYGLS------TCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRF 72
Query: 156 TDVINVPQIFVEGVHI 171
++ P +
Sbjct: 73 NPSVSFPTTIINDEKA 88
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame
87, Fe/S cluster, oxidoreductase, thioredoxin family,
GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens}
PDB: 2wul_A*
Length = 118
Score = 38.9 bits (91), Expect = 2e-04
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 123 KVKQILRTHLVK-FDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181
V QILR H V+ + +V E +Q K+ ++ +PQ+++ G +G D + +++
Sbjct: 40 AVVQILRLHGVRDYAAYNVLDDPELRQGIKDY--SNWPTIPQVYLNGEFVGGCDILLQMH 97
Query: 182 ESGELRRILK 191
++G+L LK
Sbjct: 98 QNGDLVEELK 107
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria
phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 37.8 bits (88), Expect = 3e-04
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 43 CLKVKQILRTHLVKFDDKDV-----FMSRETQQEFKERLGTDVIN---VPQIFVE-GVHI 93
C K++L F+ ++ E E +LG D +PQ+F G HI
Sbjct: 17 CDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHI 76
Query: 94 GTWQE 98
G + +
Sbjct: 77 GGFDQ 81
Score = 37.1 bits (86), Expect = 6e-04
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 121 CLKVKQILRTHLVKFDDKDV-----FMSRETQQEFKERLGTDVIN---VPQIFVE-GVHI 171
C K++L F+ ++ E E +LG D +PQ+F G HI
Sbjct: 17 CDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHI 76
Query: 172 GDADAIERLNE 182
G D + +
Sbjct: 77 GGFDQLREYFK 87
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron
transport, mitochondrion, redox-active center, transit
peptide, transport; 1.67A {Saccharomyces cerevisiae}
Length = 121
Score = 36.6 bits (85), Expect = 0.001
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 123 KVKQILRTHLV---KFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
+L V KF +V E ++ KE ++ +PQ++V IG D I
Sbjct: 36 ATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF--SEWPTIPQLYVNKEFIGGCDVITS 93
Query: 180 LNESGELRRILK 191
+ SGEL +L+
Sbjct: 94 MARSGELADLLE 105
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 37.7 bits (88), Expect = 0.003
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TD 157
++ ++++S T T C KVK +L +K ++ ++ L +
Sbjct: 16 DSAAVILFSKT------TCPYCKKVKDVLAEAKIKHATIEL-DQLSNGSAIQKCLASFSK 68
Query: 158 VINVPQIFVEGVHIGDADAIERLNESGELRRILKP 192
+ VPQ+FV G IGD+ + + + EL I+
Sbjct: 69 IETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNE 103
Score = 27.7 bits (62), Expect = 4.5
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 15 PMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKE 74
P + K V + + + T C KVK +L +K ++ ++
Sbjct: 3 PADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIEL-DQLSNGSAIQK 61
Query: 75 RLG--TDVINVPQIFVEGVHIG 94
L + + VPQ+FV G IG
Sbjct: 62 CLASFSKIETVPQMFVRGKFIG 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 37/228 (16%), Positives = 67/228 (29%), Gaps = 74/228 (32%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSRETQQEFKERLGTDV 80
KI++ TT R +V L TH+ E + + L
Sbjct: 267 KILL--TT----RFK-----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 81 INVPQ-----------IFVEGV--HIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQI 127
++P+ I E + + TW + + C K+ I
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDN--------WK---------HVNCDKLTTI 358
Query: 128 LRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL---NESG 184
+ + L +V E ++ F L +F HI + +
Sbjct: 359 IESSL------NVLEPAEYRKMFDR-LS--------VFPPSAHI-PTILLSLIWFDVIKS 402
Query: 185 ELRRILKPY-------KSPDACTICQVCGGYRLLPCSLCNGSKKSVHR 225
++ ++ K P TI + Y L L N + ++HR
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLEN--EYALHR 447
Score = 32.9 bits (74), Expect = 0.10
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 21/154 (13%)
Query: 55 VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV------EGVHIGTWQEKEAGKIVMYS 108
+K + + M E ++RL D + V + + + A +++
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 109 TTMGIVRDTYHRCLKVKQILRTHLV--KFDDKDVF-MS---RETQQEFKERLGTDVINVP 162
+ T + + ++ V K D K +F ++ + + E L + +
Sbjct: 158 --VLGSGKT---WV-ALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 163 QIFVEGVHIGDADAIERLNESGELRRIL--KPYK 194
+ + + ELRR+L KPY+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 35.8 bits (83), Expect = 0.007
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 121 CLKVKQILRTHLVKFDDKDVFMSRE-TQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
C K KQ+L + F++ + + + T + G VPQ+F+ G HIG +D +E+
Sbjct: 183 CAKAKQLLHDKGLSFEE--IILGHDATIVSVRAVSGRT--TVPQVFIGGKHIGGSDDLEK 238
Score = 33.1 bits (76), Expect = 0.053
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 43 CLKVKQILRTHLVKFDDKDVFMSRE-TQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEA 101
C K KQ+L + F++ + + + T + G VPQ+F+ G HIG + E
Sbjct: 183 CAKAKQLLHDKGLSFEE--IILGHDATIVSVRAVSGRT--TVPQVFIGGKHIGGSDDLEK 238
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.007
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 7/26 (26%)
Query: 173 DADAIERLNESGELRRILKPYKSPDA 198
+ A+++L S LK Y + D+
Sbjct: 18 EKQALKKLQAS------LKLY-ADDS 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.018
Identities = 39/248 (15%), Positives = 73/248 (29%), Gaps = 101/248 (40%)
Query: 7 QNP----FMF-----------YIPMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILR 51
NP F Y M ++ GK+ + K+ + +
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL---------------KTEKIFKEIN 1711
Query: 52 THLVK--FDDKDVFMSRETQ--QEFKERLGTDVINVPQIFVEGVHIGTWQE-KEAGKIVM 106
H F + +S TQ Q P + + + +++ K G I
Sbjct: 1712 EHSTSYTFRSEKGLLSA-TQFTQ-------------PALTL--MEKAAFEDLKSKGLIPA 1755
Query: 107 -----------YS------------TTMGIVR---DTYHRCLKVKQILRTH--LVKFDDK 138
Y+ + + +V T + ++ R++ ++ +
Sbjct: 1756 DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 139 DV--FMSRETQQEFKERLG--TDVI------NVP--QIFVEGVHIGDADAIERLNESGEL 186
V S+E Q ER+G T + NV Q V GD A++ +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY-VAA---GDLRALDTVTN---- 1867
Query: 187 RRILKPYK 194
+L K
Sbjct: 1868 --VLNFIK 1873
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.36
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 211 LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV 246
L C C + ++V C C GLV
Sbjct: 22 LTCPECKVYPPKIVERFSEGDVV---CALC---GLV 51
Score = 29.6 bits (66), Expect = 0.71
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 19/66 (28%)
Query: 142 MSRETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERLNESGELRRILKPYKSPDACT 200
M+RE+ + R G ++ N+ E V+ +ER G+
Sbjct: 2 MTRESIDKRAGRRGPNL-NIVLTCPECKVY--PPKIVER-FSEGD--------------V 43
Query: 201 ICQVCG 206
+C +CG
Sbjct: 44 VCALCG 49
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.43
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 21/91 (23%)
Query: 80 VINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKF-DD- 137
+ ++ E I W+E++ ++ D + ++Q R K ++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQ--------ELDAASK--VMEQEWREKAKKDLEEW 123
Query: 138 ---------KDVFMSRETQQEFKERLGTDVI 159
K+ +R + F ++ D+I
Sbjct: 124 NQRQSEQVEKNKINNRIADKAFYQQPDADII 154
Score = 27.4 bits (60), Expect = 4.0
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 21/75 (28%)
Query: 18 WQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKF-DD----------KDVFMSR 66
W+E++ ++ D + ++Q R K ++ K+ +R
Sbjct: 90 WREEQRKRLQ--------ELDAASK--VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 67 ETQQEFKERLGTDVI 81
+ F ++ D+I
Sbjct: 140 IADKAFYQQPDADII 154
>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione
transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis
elegans}
Length = 207
Score = 30.0 bits (68), Expect = 0.49
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 133 VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
+++D +++E KE +P + V+G + + AI R
Sbjct: 27 QQYEDN--RVTQEQWPALKETCAAPFGQLPFLEVDGKKLAQSHAIAR 71
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella
bronchisepti structural genomics, PSI-2, protein
structure initiative; 1.83A {Bordetella bronchiseptica
RB50}
Length = 252
Score = 30.2 bits (68), Expect = 0.50
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 133 VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
+ + D+ + + + R T P + +G+ I I
Sbjct: 46 IPYRDRAREPGEDMLDDMRRRRDTPPFAPPYLVADGMTIAQTANILL 92
>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A
{Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A
Length = 229
Score = 29.0 bits (65), Expect = 1.2
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 133 VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
V+F++ +RE ++ + VP + ++G+ + AI
Sbjct: 28 VEFEEV-FLETREQYEKLLQSGILMFQQVPMVEIDGMKLVQTRAILN 73
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 27.0 bits (60), Expect = 1.4
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 196 PDACTICQVCGGYRLL-PCSLCNGSKKSVHRN 226
C IC G C C G ++VHR+
Sbjct: 6 VPVCWICNEELGNERFRACG-CTGELENVHRS 36
>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET:
GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5
PDB: 2wrt_A 1fhe_A*
Length = 216
Score = 28.6 bits (64), Expect = 1.5
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 133 VKFDDKDV-FMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
K++++ E K LG D+ N+P + + + AI R
Sbjct: 25 EKYEEQIYERDDGEKWFSKKFELGLDLPNLPYYIDDKCKLTQSLAILR 72
>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis
sinensis}
Length = 218
Score = 28.6 bits (64), Expect = 1.7
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 133 VKFDDKDV-FMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
+++ E Q K LG ++ N+P + + AI R
Sbjct: 26 DSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILR 73
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 28.6 bits (63), Expect = 2.1
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 25/56 (44%)
Query: 202 CQVCG---------------GYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDE 242
C CG G R L CSLC H+ V +KC +C+E
Sbjct: 185 CPACGSPPMAGMIRQGGKETGLRYLSCSLCA------CEWHY----VRIKCSHCEE 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 28.5 bits (64), Expect = 2.4
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 186 LRRILKPYKSPDACTICQVCGGYRL 210
LR++L + GYRL
Sbjct: 79 LRKLLGGAGIDPRVVLAAAPPGYRL 103
>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit
cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP:
a.45.1.1 c.47.1.5 PDB: 1guk_A
Length = 221
Score = 27.8 bits (62), Expect = 2.7
Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 133 VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
V+F+++ +RE ++ ++ VP + ++G+ + AI
Sbjct: 27 VEFEEE-FLETREQYEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILS 72
>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm,
polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A
1gul_A*
Length = 222
Score = 27.9 bits (62), Expect = 3.1
Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 133 VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
V+FD++ ++E + ++ VP + ++G+ + +I
Sbjct: 28 VEFDEE-FLETKEQLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILH 73
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: g.50.1.3
Length = 89
Score = 26.7 bits (58), Expect = 3.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 191 KPYKSPDACTICQVCGGYRLLPCSLCN 217
+P + + C +C+V L PC +C
Sbjct: 10 EPVVNDEMCDVCEVWTAESLFPCRVCT 36
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water
structu transferase; HET: GTX; 1.30A {Homo sapiens}
SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A*
1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A*
3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A*
1xwg_A 3l0h_A* 1ags_A* ...
Length = 221
Score = 27.5 bits (61), Expect = 3.6
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 133 VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
V+F++K S E + + VP + ++G+ + AI
Sbjct: 27 VEFEEK-FIKSAEDLDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILN 72
>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP:
a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A*
2aaw_A* 3fr6_A 3fr3_A*
Length = 211
Score = 27.4 bits (61), Expect = 3.8
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 133 VKFDDKDVFMSRETQQEF---KERLGTDVINVPQIFVEGVHIGDADAIER 179
+++ DK ++ + EF K+ T VP + + + + + AI R
Sbjct: 28 IEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVR 77
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 27.2 bits (61), Expect = 4.0
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 94 GTWQEKEAGKIVMYS-TTMGIVRDTY 118
+EK MY +GI R T+
Sbjct: 109 DVIKEKN-----MYGKQVLGIERSTF 129
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 25.3 bits (55), Expect = 5.1
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 187 RRILKPYKSPDACTICQVCGGYRLLPCSLCN 217
+ Y D+ C CG CS CN
Sbjct: 5 FQGENLYFQGDSSESCWNCGRKASETCSGCN 35
>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal
fibrinogen gamma...; gamma chain integrin fragment; HET:
GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1
c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A*
1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A*
3cru_A* 3d0z_A*
Length = 234
Score = 27.1 bits (60), Expect = 5.4
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 133 VKFDDKDV-FMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
K+++ + + K LG + N+P V + + AI R
Sbjct: 25 EKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIR 72
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 25.6 bits (56), Expect = 5.5
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 195 SPDACTICQVCGGYR---LLPCSLCNGSKKSVHRN 226
S D C IC G + PC C GS VH+
Sbjct: 14 SQDICRICHCEGDDESPLITPCH-CTGSLHFVHQA 47
>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal
protein; 2.70A {Escherichia coli} SCOP: a.45.1.1
c.47.1.5
Length = 280
Score = 27.2 bits (60), Expect = 5.7
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 133 VKFDDKDV-FMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
K+++ + + K LG + N+P V + + AI R
Sbjct: 25 EKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIR 72
>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione
S-transferase; ankyrin binding, carrier crystallization,
ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1
c.47.1.5
Length = 254
Score = 26.7 bits (59), Expect = 6.2
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 133 VKFDDKDV-FMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
K+++ + + K LG + N+P V + + AI R
Sbjct: 26 EKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIR 73
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 26.5 bits (59), Expect = 6.6
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 94 GTWQEKEAGKIVMYS-TTMGIVRDTY 118
+EK MY +GI R T+
Sbjct: 125 DVIKEKT-----MYGRQVIGIERSTF 145
>2q88_A EHUB, putative ABC transporter amino acid-binding prote;
substrate-binding protein, compatible solues,
ABC-transporte osmoprotection; HET: 4CS; 1.90A
{Sinorhizobium meliloti} PDB: 2q89_A*
Length = 257
Score = 26.5 bits (59), Expect = 7.3
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 175 DAIERLNESGELRRILKPY----KSPDACTICQVCGG 207
+ +L ESGE +I++PY K+ + T ++C
Sbjct: 220 VELAKLKESGEFAKIIEPYGFSAKAAMSTTREKLCAA 256
>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier,
S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A*
14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A*
3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A*
17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...
Length = 210
Score = 26.6 bits (59), Expect = 7.4
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 133 VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
+ ++ ++ ET QE + +P+ + + ++ I R
Sbjct: 27 QSWKEE--VVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILR 71
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding
protein; NMR {Homo sapiens}
Length = 60
Score = 24.5 bits (53), Expect = 9.1
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 194 KSPDACTICQVCGGYRLLPCSLCN 217
+ D+ C CG CS CN
Sbjct: 8 PNSDSSESCWNCGRKASETCSGCN 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.432
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,898,087
Number of extensions: 233480
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 118
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)