RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15946
(251 letters)
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 93
Score = 83.8 bits (207), Expect = 2e-21
Identities = 19/90 (21%), Positives = 36/90 (40%)
Query: 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 161
+ +YST++ R+ + +V +IL +++ D+ + E + G
Sbjct: 2 SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATP 61
Query: 162 PQIFVEGVHIGDADAIERLNESGELRRILK 191
PQI + GD + E L+ LK
Sbjct: 62 PQIVNGNHYCGDYELFVEAVEQDTLQEFLK 91
Score = 65.7 bits (160), Expect = 1e-14
Identities = 14/75 (18%), Positives = 31/75 (41%)
Query: 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 83
+ +YST++ R+ + +V +IL +++ D+ + E + G
Sbjct: 2 SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATP 61
Query: 84 PQIFVEGVHIGTWQE 98
PQI + G ++
Sbjct: 62 PQIVNGNHYCGDYEL 76
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 109
Score = 60.8 bits (147), Expect = 9e-13
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 103 KIVMYSTTMGIVRDTYHR-CLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 161
++++ G ++ ++ +IL + V+++ D+ E +Q K
Sbjct: 16 SVMLFM--KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTY-- 71
Query: 162 PQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDA 198
PQ++V G +G D ++ L ++GEL ILK P +
Sbjct: 72 PQLYVRGDLVGGLDIVKELKDNGELLPILKGESGPSS 108
Score = 41.5 bits (97), Expect = 9e-06
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 25 KIVMYSTTMGIVRDTYHR-CLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 83
++++ G ++ ++ +IL + V+++ D+ E +Q K
Sbjct: 16 SVMLFM--KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTY-- 71
Query: 84 PQIFVEGVHIG 94
PQ++V G +G
Sbjct: 72 PQLYVRGDLVG 82
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli, Grx3 [TaxId: 562]}
Length = 82
Score = 56.5 bits (136), Expect = 2e-11
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
+ +Y+ C + K +L + V F + + + ++E +R G VP
Sbjct: 2 NVEIYTKETCPY------CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG--RTTVP 53
Query: 163 QIFVEGVHIGDADAIERLNESGELRRILK 191
QIF++ HIG D + L+ G L +LK
Sbjct: 54 QIFIDAQHIGGYDDLYALDARGGLDPLLK 82
Score = 40.3 bits (94), Expect = 1e-05
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
+ +Y+ C + K +L + V F + + + ++E +R G VP
Sbjct: 2 NVEIYTKETCPY------CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG--RTTVP 53
Query: 85 QIFVEGVHIGTWQE 98
QIF++ HIG + +
Sbjct: 54 QIFIDAQHIGGYDD 67
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 45.8 bits (108), Expect = 2e-07
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDD-----KDVFMSRETQQEFKERLGTD 157
+ V++ + C++ K + + DD D+ T+++ +++ G
Sbjct: 2 QTVIFGRSGCPY------CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKP 55
Query: 158 VINVPQIFVEGVHIGDADAIERLNE 182
V VPQIFV+ HIG +
Sbjct: 56 VETVPQIFVDQQHIGGYTDFAAWVK 80
Score = 42.7 bits (100), Expect = 2e-06
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDD-----KDVFMSRETQQEFKERLGTD 79
+ V++ + C++ K + + DD D+ T+++ +++ G
Sbjct: 2 QTVIFGRSGCPY------CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKP 55
Query: 80 VINVPQIFVEGVHIGTWQE 98
V VPQIFV+ HIG + +
Sbjct: 56 VETVPQIFVDQQHIGGYTD 74
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 45.1 bits (106), Expect = 5e-07
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG----TD 157
GK+V++ T C K +++L K + T + + T
Sbjct: 12 GKVVVFIKP------TCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65
Query: 158 VINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
VP++F+ IG +E +++ GEL L+
Sbjct: 66 ARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99
Score = 29.3 bits (65), Expect = 0.17
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG----TD 79
GK+V++ T C K +++L K + T + + T
Sbjct: 12 GKVVVFIKP------TCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65
Query: 80 VINVPQIFVEGVHIGTWQE 98
VP++F+ IG +
Sbjct: 66 ARTVPRVFIGKECIGGCTD 84
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5
{Haemophilus influenzae [TaxId: 727]}
Length = 74
Score = 42.2 bits (99), Expect = 2e-06
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
I +++ C K KQ+L + F++ + T + G VP
Sbjct: 6 SISIFTKPGCPF------CAKAKQLLHDKGLSFEEIILGHD-ATIVSVRAVSG--RTTVP 56
Query: 163 QIFVEGVHIGDADAIER 179
Q+F+ G HIG +D +E+
Sbjct: 57 QVFIGGKHIGGSDDLEK 73
Score = 39.5 bits (92), Expect = 2e-05
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
I +++ C K KQ+L + F++ + T + G VP
Sbjct: 6 SISIFTKPGCPF------CAKAKQLLHDKGLSFEEIILGHD-ATIVSVRAVSG--RTTVP 56
Query: 85 QIFVEGVHIGTWQE 98
Q+F+ G HIG +
Sbjct: 57 QVFIGGKHIGGSDD 70
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 74
Score = 38.8 bits (90), Expect = 4e-05
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
I +Y+ +C K+ L + ++ D+ + E + + P
Sbjct: 2 SITLYTKPAC------VQCTATKKALDRAGLAYNTVDISLDDEARDYVMA---LGYVQAP 52
Query: 163 QIFVEGVHIG--DADAIERL 180
+ V+G H + I++L
Sbjct: 53 VVEVDGEHWSGFRPERIKQL 72
Score = 35.0 bits (80), Expect = 7e-04
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
I +Y+ +C K+ L + ++ D+ + E + + P
Sbjct: 2 SITLYTKPAC------VQCTATKKALDRAGLAYNTVDISLDDEARDYVMA---LGYVQAP 52
Query: 85 QIFVEGVHIG 94
+ V+G H
Sbjct: 53 VVEVDGEHWS 62
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia
coli [TaxId: 562]}
Length = 76
Score = 38.1 bits (88), Expect = 6e-05
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
+I +Y+ + +C K+ + F+ +V E + + +P
Sbjct: 2 RITIYTR------NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA---QGFRQLP 52
Query: 163 QIFVEGVHIG--DADAIERLNES 183
+ + D I RL+ +
Sbjct: 53 VVIAGDLSWSGFRPDMINRLHPA 75
Score = 32.3 bits (73), Expect = 0.009
Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
+I +Y+ + +C K+ + F+ +V E + + +P
Sbjct: 2 RITIYTR------NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA---QGFRQLP 52
Query: 85 QIFVEGVHIG 94
+ +
Sbjct: 53 VVIAGDLSWS 62
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Bacteriophage T4 [TaxId: 10665]}
Length = 87
Score = 37.0 bits (85), Expect = 3e-04
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 121 CLKVKQILRTHLVKF-----DDKDVFMSRETQQEFKERLG---TDVINVPQIFV-EGVHI 171
C K++L F + E E +LG + +PQ+F +G HI
Sbjct: 17 CDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHI 76
Query: 172 GDADAIERL 180
G D +
Sbjct: 77 GGFDQLREY 85
Score = 35.8 bits (82), Expect = 7e-04
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 43 CLKVKQILRTHLVKF-----DDKDVFMSRETQQEFKERLG---TDVINVPQIFV-EGVHI 93
C K++L F + E E +LG + +PQ+F +G HI
Sbjct: 17 CDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHI 76
Query: 94 GTWQE 98
G + +
Sbjct: 77 GGFDQ 81
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 30.3 bits (68), Expect = 0.17
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 25/56 (44%)
Query: 202 CQVCG---------------GYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDE 242
C CG G R L CSLC H+ V +KC +C+E
Sbjct: 167 CPACGSPPMAGMIRQGGKETGLRYLSCSLCA------CEWHY----VRIKCSHCEE 212
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 27.3 bits (60), Expect = 0.44
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 197 DACTICQVCG-GYRLLPCSLCNGS 219
D+ TIC+VC L+ C+ C
Sbjct: 5 DSATICRVCQKPGDLVMCNQCEFC 28
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 26.0 bits (57), Expect = 1.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 195 SPDACTICQVCGGYRLLPCSLC 216
+ + C +C+V L PC +C
Sbjct: 14 NDEMCDVCEVWTAESLFPCRVC 35
>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 74
Score = 25.0 bits (54), Expect = 3.6
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 120 RCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
R ++ I ++++D + + + + G +P + V+G+ + + AI R
Sbjct: 13 RAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFG----KIPILEVDGLTLHQSLAIAR 68
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 24.6 bits (53), Expect = 4.6
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 201 ICQVCGG------YRLLPCSLCNG-SKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
+C+VCG Y +L C C G ++S+ +N + + + + +C C
Sbjct: 2 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQC 59
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 24.5 bits (53), Expect = 5.0
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 201 ICQVCGG------YRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
IC +CG Y + C C G K R T K D+ +C C
Sbjct: 7 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 63
>d1rf8b_ a.210.1.1 (B:) Eukaryotic initiation factor 4f subunit
eIF4g, eIF4e-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 100
Score = 24.8 bits (54), Expect = 5.1
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 2 FLRPFQNPFMFYIPMTWQEKEAGKIV 27
FL F++ W + A KIV
Sbjct: 68 FLLQFKDKLNVKADAEWVQSTASKIV 93
>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides
polygyrus [TaxId: 6339]}
Length = 77
Score = 23.7 bits (51), Expect = 9.4
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 120 RCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER 179
+Q+ K++D + + G VP + V+G + + AI R
Sbjct: 14 AGECARQVFALADQKYEDVRLTQETFVPLKATFPFG----QVPVLEVDGQQLAQSQAICR 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.432
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 975,078
Number of extensions: 46397
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 32
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)