BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15948
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B
PE=2 SV=1
Length = 199
Score = 260 bits (664), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 144/193 (74%), Positives = 163/193 (84%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
ME HLFNLKFAAKEL RNSKRC+KEEKAEK K KKAIQKGN+EVARIHAENAIRQKNQ+I
Sbjct: 4 MEKHLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAI 63
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRMSARVDAVA+RVQTA+T KVT+SM+GVVK+MDA +KSMNLEKIS LMDKFE QFE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
LDVQ+ MENTMS + T + PQN VD L++++ADEAGL+L M LP G +S S
Sbjct: 124 TLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183
Query: 181 EQDELSQRLARLR 193
EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196
>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b
PE=2 SV=1
Length = 199
Score = 257 bits (656), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 139/193 (72%), Positives = 165/193 (85%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
ME HLFNLKFAAKEL+RNSK+C+KEEKAEK+K KKAIQKGN+EVARIHAENAIRQKNQS+
Sbjct: 4 MEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSV 63
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRMSARVDAVA+RVQTA+T +VT+SM+GVVK MDA +KSMNLEKISGLM+KFE QFE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFE 123
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
LDVQ++ ME++MS + T + PQ VD+LM ++ADEAGL+L M LP G +S S
Sbjct: 124 TLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGTSVASA 183
Query: 181 EQDELSQRLARLR 193
EQDELSQRLA+LR
Sbjct: 184 EQDELSQRLAKLR 196
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1
PE=1 SV=1
Length = 199
Score = 246 bits (629), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 140/193 (72%), Positives = 162/193 (83%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
ME HLFNLKFAAKEL R+SK+C+KEEKAEK K KKAIQKGN+EVARIHAENAIRQKNQ +
Sbjct: 4 MEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGV 63
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRMSARVDAVA+RVQTA+T KVT+SM+GVVK+MDA +KSMNLEKIS LMDKFE QFE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
LDVQ+ ME+TMS + T + PQN VD L++++ADEAGL+L M LP G +S S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183
Query: 181 EQDELSQRLARLR 193
EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2
PE=2 SV=2
Length = 199
Score = 246 bits (628), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 140/193 (72%), Positives = 162/193 (83%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
ME HLFNLKFAAKEL RN+K+C+KEEKAEK K KKAIQKGN EVARIHAENAIRQKNQ+I
Sbjct: 4 MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAI 63
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRMSARVDAVA+RVQTA+T KVT+SM+GVVK+MDA ++SMNLEKIS LMDKFE QFE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFE 123
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
LDVQ+ ME+TMS + T + PQN VD L++++ADEAGL+L M LP G +S S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGASVAST 183
Query: 181 EQDELSQRLARLR 193
EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b
PE=2 SV=1
Length = 199
Score = 246 bits (627), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 140/193 (72%), Positives = 161/193 (83%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
ME HLFNLKFAAKEL RN+K+CEKEEK EK K KKAIQKGN E+ARIHAENAIRQKNQ I
Sbjct: 4 MEKHLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGI 63
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRMSARVDAVA+RVQTA+T KVT+SM+GVVK+MDA +KSMNLEKIS LMDKFE QFE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
LDVQ+ ME+TMS + T + PQN VD+L+ ++ADEAGL+L+M LP G +S S
Sbjct: 124 TLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVGTSVAST 183
Query: 181 EQDELSQRLARLR 193
EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B
PE=1 SV=1
Length = 199
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/193 (71%), Positives = 163/193 (84%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
ME HLFNLKFAAKEL R++K+C+KEEKAEK K KKAIQKGN+EVARIHAENAIRQKNQ++
Sbjct: 4 MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRMSARVDAVA+RVQTA+T KVT+SM+GVVK+MDA +K+MNLEKIS LMDKFE QFE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
LDVQ+ ME+TMS + T + PQN VD L++++ADEAGL+L M LP G +S S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183
Query: 181 EQDELSQRLARLR 193
EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2
SV=1
Length = 199
Score = 243 bits (619), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 137/193 (70%), Positives = 162/193 (83%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
ME HLFNLKFAAKEL R++K+C+KEEKAEK K KKAIQKGN+EVARIHAENAIRQKNQ++
Sbjct: 4 MEKHLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRMSARVDAVA+RVQTA+T KVT+SM+GVVK+MDA +K+MNLEKIS LMDKFE QFE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
LDVQ+ ME+TMS + T + PQ VD L++++ADEAGL+L M LP G +S S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183
Query: 181 EQDELSQRLARLR 193
EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b OS=Xenopus tropicalis
GN=chmp1b PE=2 SV=1
Length = 199
Score = 240 bits (613), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/193 (71%), Positives = 159/193 (82%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
ME +LFNLKFAAKEL RN+K+CEKEEK EK K KKAIQKGN E+ARIHAENAIRQKNQ I
Sbjct: 4 MEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGI 63
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRMSARVDAVA+RVQTA+T KVT+SM+GVVK+MD +KSMNLEKIS LMDKFE QFE
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFE 123
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
LDVQ+ ME+TMS + T + PQN VD+L+ ++ADEAGL+L M LP G +S S
Sbjct: 124 TLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVGTSVAST 183
Query: 181 EQDELSQRLARLR 193
EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196
>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum
GN=chmp1 PE=3 SV=1
Length = 192
Score = 224 bits (570), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/195 (56%), Positives = 154/195 (78%), Gaps = 6/195 (3%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
MEN LF LKF +K+LE+ SK+ E+ EKA+K+K KKAI++GN++ ARI+A+NAIR+KNQS+
Sbjct: 1 MENQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSL 60
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
NYLR+++R+DAVASRV+TA+ + VT SM+ +VK+M+ +M++M+LEKI+ +MD+FE QFE
Sbjct: 61 NYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFE 120
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
DLDVQS Y+EN M+Q+ T S P + VD L+ QVADE GL + M + S P S +V Q
Sbjct: 121 DLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAP-----SEKVQQ 175
Query: 181 -EQDELSQRLARLRQ 194
E DEL++RL RL+Q
Sbjct: 176 GETDELTERLNRLKQ 190
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a
PE=1 SV=1
Length = 196
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 152/196 (77%), Gaps = 4/196 (2%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
M++ LF LKF AK+LE+ +K+ EK+ KAE+ K KKA+Q+ N+E AR++AENAIR+KN+ +
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGV 60
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRM++RVDAVAS+VQTA+T + VT++M+ V KA+D A+ +M+L+K+S +MD+FE+Q +
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQ 120
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLEL---TMALPSGPDSIAASSQ 177
+LDV +S ME+++S + T + PQ VDSL+ Q+A+E GLE+ LP G ++ SS
Sbjct: 121 NLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSV 180
Query: 178 VSQEQDELSQRLARLR 193
SQE D+LS+RLA LR
Sbjct: 181 RSQE-DQLSRRLAALR 195
>sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a
PE=2 SV=1
Length = 198
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 152/197 (77%), Gaps = 4/197 (2%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
M++ LF LKF +K+LER +K+ EK+ K+E+ K KKA+Q+ N+E AR++AENAIR+KN+ +
Sbjct: 1 MDDTLFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGL 60
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRM++RVDAVAS+VQTALT + V ++M+ V KA+D A+ SM+L+K+S +MDKFE Q +
Sbjct: 61 NWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQ 120
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLEL---TMALPSGPDSIAASSQ 177
+LDV +S ME++MS + T S PQ VD L+ Q+A+E+GLE+ LP+G ++ +S
Sbjct: 121 NLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSA 180
Query: 178 VSQE-QDELSQRLARLR 193
+QE +D+LS+RLA LR
Sbjct: 181 RAQEKEDQLSRRLAALR 197
>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a
PE=2 SV=1
Length = 196
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 152/196 (77%), Gaps = 4/196 (2%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
M++ LF LKF AK+LE+ +K+ EK+ E+ K KKA+Q+ N+EVAR++AENAIR+KN+ +
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGL 60
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRM++RVDAVAS+VQTA+T + VT++M+ V KA+D A+ SM+L+K+S +MDKF++Q +
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQ 120
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELT---MALPSGPDSIAASSQ 177
+LDV +S ME++MS ++T + PQ VD+L+ Q+A+E GLE+ LP G S+ SS
Sbjct: 121 NLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLNQLPQGASSVGESST 180
Query: 178 VSQEQDELSQRLARLR 193
+QE D+LS+RLA LR
Sbjct: 181 RTQE-DQLSRRLASLR 195
>sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A
PE=2 SV=1
Length = 196
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 151/196 (77%), Gaps = 4/196 (2%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
M++ LF LKF AK+LE+ +K+ EK+ KAE+ K KKA+ + N+E AR++AENAIR+KN+ +
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV 60
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRM++RVDAVAS+VQTA+T + VT++M+ V KA+D A+ +M+L+K+S +MD+FE+Q +
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQ 120
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLEL---TMALPSGPDSIAASSQ 177
+LDV +S ME++MS + T + PQ VDSL+ Q+A+E GLE+ LP G ++ SS
Sbjct: 121 NLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 180
Query: 178 VSQEQDELSQRLARLR 193
SQE D+LS+RLA LR
Sbjct: 181 RSQE-DQLSRRLAALR 195
>sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A
PE=1 SV=1
Length = 196
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 151/196 (77%), Gaps = 4/196 (2%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
M++ LF LKF AK+LE+ +K+ EK+ KAE+ K KKA+ + N+E AR++AENAIR+KN+ +
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV 60
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N+LRM++RVDAVAS+VQTA+T + VT++M+ V KA+D A+ +M+L+K+S +MD+FE+Q +
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQ 120
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLEL---TMALPSGPDSIAASSQ 177
+LDV +S ME++MS + T + PQ VDSL+ Q+A+E GLE+ LP G ++ SS
Sbjct: 121 NLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 180
Query: 178 VSQEQDELSQRLARLR 193
SQE D+LS+RLA LR
Sbjct: 181 RSQE-DQLSRRLAALR 195
>sp|O60074|DID2_SCHPO Vacuolar protein-sorting-associated protein 46
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=did2 PE=3 SV=2
Length = 200
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 134/196 (68%), Gaps = 3/196 (1%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
+E LF LKFAAK L + S + KEE+AE+ K KKAI KGN E+ARI+A NAIR++ +S+
Sbjct: 4 LEASLFQLKFAAKSLNKQSLKAAKEERAEREKVKKAITKGNSEIARIYASNAIRKQQESL 63
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N L++S+R+DAV+SR+QTA+T R V+ +M+GVV+ MD AMK+MNLE IS +MDKFE QF+
Sbjct: 64 NLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDKFEAQFD 123
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALP---SGPDSIAASSQ 177
D++VQ+ YM M PQ DVD LM+ VADEAGLE + S P + +
Sbjct: 124 DVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAASVPTPA 183
Query: 178 VSQEQDELSQRLARLR 193
E D L +RL LR
Sbjct: 184 APVEDDNLQERLRALR 199
>sp|P69771|DID2_YEAST Vacuolar protein-sorting-associated protein 46 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DID2 PE=1
SV=1
Length = 204
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 134/196 (68%), Gaps = 4/196 (2%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
+EN LF LKF +K+L++ + + KEEK E K K+A+ + N +++RI+A NAIR+KN+ +
Sbjct: 9 LENTLFQLKFTSKQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERL 67
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
L++++RVD+VASRVQTA+T R+V+ SM V K MD A+++MNL++I+ +MDKFE+QFE
Sbjct: 68 QLLKLASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFE 127
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMA--LPSGPDSIAASSQV 178
DLD + E+ S V + VD LM +VADE G+EL + L + P+ A V
Sbjct: 128 DLDTSVNVYEDMGVNSDAMLVDNDKVDELMSKVADENGMELKQSAKLDNVPEIKAKEVNV 187
Query: 179 SQE-QDELSQRLARLR 193
E +D+L+QRL LR
Sbjct: 188 DDEKEDKLAQRLRALR 203
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 91/169 (53%)
Query: 7 NLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMS 66
NL + +E++R + +EK L KK ++G + A+I A++ +R + + M
Sbjct: 20 NLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMK 79
Query: 67 ARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQS 126
++ AV+ R+QT +T+ + ++M GV KAM + MNL + + +M +FE+Q + +D++
Sbjct: 80 TQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKE 139
Query: 127 SYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAAS 175
M +TM Q + + ++ QV DE G++L L P ++ S
Sbjct: 140 EMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAPTTVGTS 188
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
L A +EL+R ++ E +EK KK ++G ++ RI A++ +R + ++ M A
Sbjct: 22 LNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRA 81
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
+ AV+ ++QT + + Q+M GV KAM + + L +I +M +FE Q E +D++
Sbjct: 82 NIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEE 141
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELT---MALPS--GPDSIAASSQ 177
M + + ++ + + D+++ QV DE GL LT LPS G S+AA +
Sbjct: 142 MMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGK 196
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
L A +EL+R ++ E +EK KK ++G ++ RI A++ +R + ++ M A
Sbjct: 22 LNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRA 81
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
+ AV+ ++QT + + Q+M GV KAM + + L +I +M +FE Q E +D++
Sbjct: 82 NIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEE 141
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDS 171
M + + ++ + + D+++ QV DE GL LT L + P +
Sbjct: 142 MMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPST 185
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 91/164 (55%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
L A +EL+R ++ E++EK KK ++G ++ +I A++ +R + ++ M A
Sbjct: 22 LNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRA 81
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
+ AV+ ++QT + + Q+M GV KAM + + L +I +M +FE+Q E +D++
Sbjct: 82 NIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEE 141
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDS 171
M + + ++ + + D+++ QV DE GL LT L + P +
Sbjct: 142 MMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPST 185
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 11 AAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVD 70
A +E++R ++ E++EK KK ++G ++ +I A++ +R + ++ M A +
Sbjct: 25 AMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQ 84
Query: 71 AVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYME 130
AV+ ++QT + + Q+M GV KAM + + L +I +M +FE+Q E +D++ M
Sbjct: 85 AVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMN 144
Query: 131 NTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQDELS 186
+ + ++ + + D+++ QV DE GL LT L + P + + S ++ E S
Sbjct: 145 DAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEPS 200
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 13 KELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAV 72
+E+ER + + +EK + KK ++G + ++ A++ IR ++Q + ++ +++ V
Sbjct: 28 REIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGV 87
Query: 73 ASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENT 132
+ R+QT +T+ + ++M GV KAM + MNL + +M +FE Q E +++ S M +
Sbjct: 88 SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDA 147
Query: 133 MSQSVTTSVPQNDVDSLMKQVADEAGLELTMAL---PSGPDSIAAS 175
+ ++ + + + L+ QV DE G+++ L PSG ++ A+
Sbjct: 148 IDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAA 193
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 89/162 (54%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
L A ++L+R +R E++EK KK ++G ++ +I A++ +R + ++ M A
Sbjct: 22 LNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRA 81
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
+ AV+ ++QT + + Q+M GV KAM + + L +I +M +FE Q E +D++
Sbjct: 82 NIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEE 141
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGP 169
M + + ++ + + D+++ QV DE GL L+ L + P
Sbjct: 142 MMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLP 183
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 4/187 (2%)
Query: 11 AAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVD 70
A + +E+ + EEK L+ K+ + GN +I A IR + Q N A++
Sbjct: 24 ATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMR 83
Query: 71 AVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYME 130
+A+ Q V M G KAM A K+M+ K + +M +F++Q +D+ + M
Sbjct: 84 GIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMS 143
Query: 131 NTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQV----SQEQDELS 186
+++ ++ +++ + L QV DE G+++ L S P + S DEL
Sbjct: 144 DSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELE 203
Query: 187 QRLARLR 193
+RLA LR
Sbjct: 204 KRLAALR 210
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 94/189 (49%), Gaps = 2/189 (1%)
Query: 4 HLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYL 63
H +L A +EL+R + ++ E+A + K + + GN ARI A + +R +N +
Sbjct: 21 HQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRLRNSRKKMM 80
Query: 64 RMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLD 123
++ A++ R+QT T+ ++ QSM G + + KSMN+ ++ + +FE + E ++
Sbjct: 81 NAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERENEIME 140
Query: 124 VQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQD 183
+ ++ M ++ + + + K V DE G++L+ LP I ++ E D
Sbjct: 141 QRQEMIDENMDDALEEDDEEEADELVNK-VLDEIGVDLSQGLPDAATQIGTVPELKTE-D 198
Query: 184 ELSQRLARL 192
L RL L
Sbjct: 199 NLQARLDEL 207
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 87/159 (54%)
Query: 11 AAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVD 70
A +EL+R ++ E +EK + KK ++G ++ +I A++ +R + ++ M A V
Sbjct: 25 AMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQ 84
Query: 71 AVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYME 130
AV+ ++QT + + +M GV KAM + + L +I +M +FE+Q +D++ M
Sbjct: 85 AVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMN 144
Query: 131 NTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGP 169
+ + ++ + + D+++ QV DE GL LT L + P
Sbjct: 145 DAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELATLP 183
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 14/201 (6%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
+ A + +ER + EEK + KK + GN +I A +R + Q N A
Sbjct: 21 MAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRA 80
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
++ V + Q + ++ M G KAM A K M K + ++ F++Q LD+
Sbjct: 81 QIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIE 140
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQV--------- 178
M + +++ + + + L QV DE G+ + L S P A+
Sbjct: 141 MMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAAT 200
Query: 179 -----SQEQDELSQRLARLRQ 194
S E DEL +RLA LR+
Sbjct: 201 NKNSESSEVDELEKRLASLRR 221
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 13 KELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAV 72
+ELER ++ E ++K + KK+ + G + A++ A++ +R +N + M A++ A+
Sbjct: 30 RELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAI 89
Query: 73 ASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYM--- 129
+ R+Q ++ ++T+SMS + ++MNL ++ + +FE+Q + + + +M
Sbjct: 90 SLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEA 149
Query: 130 -ENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
+N M V + D ++ +V DE G++L L S P ++ +++ +++
Sbjct: 150 IDNVMGDEVDEDE---EADEIVNKVLDEIGVDLNSQLQSTPQNLVSNAPIAE 198
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 83/162 (51%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
L+ +++ R+ EK+EK +++ KK + GN + ++ A+ ++ + Q +S+
Sbjct: 21 LRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSS 80
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
+V +++++ + + K+ +M+ K M A K M+ +K + F+++ +D+
Sbjct: 81 KVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEE 140
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGP 169
M +T+ + S + + ++ QV DE G+E++ + P
Sbjct: 141 MMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHAP 182
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 81/162 (50%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
L+ + + R+ EK+EK +++ KK + GN + R+ A+ ++ + Q +S+
Sbjct: 21 LRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSS 80
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
+V +++++ + + K+ +MS K M A K M+ +K M F+++ +++
Sbjct: 81 KVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDE 140
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGP 169
+ +T+ S + + ++ QV DE G+E++ + P
Sbjct: 141 MINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAP 182
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 81/162 (50%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
L+ + + R+ EK+EK +++ KK + GN + R+ A+ ++ + Q +S+
Sbjct: 21 LRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSS 80
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
+V +++++ + + K+ +MS K M A K M+ +K M F+++ +++
Sbjct: 81 KVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEE 140
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGP 169
+ +T+ S + + ++ QV DE G+E++ + P
Sbjct: 141 MINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKAP 182
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 81/162 (50%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
LK + + R+ EK+EK +++ KK + GN + ++ A+ ++ + Q +S+
Sbjct: 21 LKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSS 80
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
+V +++++ + + K+ +MS K M A K M+ +K M F+++ +++
Sbjct: 81 KVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEE 140
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGP 169
+ +T+ S + + ++ QV DE G+E++ + P
Sbjct: 141 MINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAP 182
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 92/186 (49%), Gaps = 5/186 (2%)
Query: 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSA 67
L+ + + R+ EK+E+ +L+ KK + GN E ++ A+ ++ + Q +S+
Sbjct: 21 LRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSS 80
Query: 68 RVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSS 127
+V +++++ + + K+ +MS K M A K M+ +K M F+++ +++
Sbjct: 81 KVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEE 140
Query: 128 YMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSI-----AASSQVSQEQ 182
+ +T+ S + + ++ QV DE G+E++ + P + A++S+ S
Sbjct: 141 MINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTIS 200
Query: 183 DELSQR 188
DE +R
Sbjct: 201 DEEIER 206
>sp|B1VER8|RL10_CORU7 50S ribosomal protein L10 OS=Corynebacterium urealyticum (strain
ATCC 43042 / DSM 7109) GN=rplJ PE=3 SV=1
Length = 170
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 124 VQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIA 173
V+++ + + Q VT SV +N +L+K A EAG+E+ +L +GP ++A
Sbjct: 34 VETTELRRALGQDVTYSVAKN---TLLKLAAKEAGIEIDESLLTGPTAVA 80
>sp|Q5FW14|CHMP7_XENTR Charged multivesicular body protein 7 OS=Xenopus tropicalis
GN=chmp7 PE=2 SV=1
Length = 468
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 69 VDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSY 128
V + R+ A T RKV + V A+ A+K + +EK ++D+ +E +
Sbjct: 290 VQGILERIAAAETDRKVVSAYQMGVSALKLALKDVTMEKAESIVDQIQEYCD-------- 341
Query: 129 MENTMSQSVTTSVPQNDVDS--LMKQVAD-----EAGLELTMALPSGPDSIAASSQVSQE 181
+++ +SQ++ SV D+DS L K++ D E ++L +PSGP I+ E
Sbjct: 342 LQDDLSQTL-ASVSDADIDSEDLEKELNDILQNKEMIVDLP-DVPSGPVVISPQRPTEWE 399
Query: 182 QDE 184
D+
Sbjct: 400 TDQ 402
>sp|Q7T0X5|CHMP7_XENLA Charged multivesicular body protein 7 OS=Xenopus laevis GN=chmp7
PE=2 SV=1
Length = 422
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 69 VDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSY 128
+ + R+ A T RKV + V A+ A+K + LEK ++D+ +E D+Q
Sbjct: 290 IQGILERISAAETDRKVVSAYQMGVSALKQALKDVTLEKAESIVDQIQEY---CDLQDD- 345
Query: 129 MENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMA-LPSGPDSIAASSQVSQEQDE 184
+ T+S V +D++ + ++ + + + +PSGP I+ + D+
Sbjct: 346 LSQTLSSVTDADVDSDDLERELNEILQNEEMIIDLPDVPSGPVIISPKRPTEWKMDQ 402
>sp|O75006|SEC15_SCHPO Exocyst complex component sec15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec15 PE=3 SV=2
Length = 768
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 62 YLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGL--MDKFEEQF 119
+++++ ++D + TT +V + +SG ++ M +++M LE ++GL DK
Sbjct: 582 FVKINLKIDDFLGLAEYDWTTTQVRKDVSGYLQEMVTYLQTMYLESLAGLPKHDKSYVYL 641
Query: 120 EDLDVQSSYMENTMS----QSVTTSVPQN---DV---DSLMKQVADEA 157
E LD + M + +S + VTT+ + DV +S QV D++
Sbjct: 642 ETLDHLCTAMVDLLSDPSIRKVTTAAAEGFKLDVEYLESFAAQVPDQS 689
>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c OS=Xenopus laevis GN=chmp4c
PE=2 SV=1
Length = 227
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 67 ARVDAVASRVQ-------TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQ 118
A++D S ++ + T +V ++M KAM AA ++M+LEKI LM EQ
Sbjct: 84 AQIDGTLSTIEFQREALENSHTNTEVLKNMGYAAKAMKAAHENMDLEKIDDLMQDIHEQ 142
>sp|P41835|THI6_YEAST Thiamine biosynthetic bifunctional enzyme OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=THI6 PE=3
SV=1
Length = 540
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 89 MSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQND--V 146
+S ++ A DA + +++ GL+D QF + ++ +++ T Q+V + V N V
Sbjct: 209 VSDIMAAPDACAAT---KRLRGLLDATRYQFVECELNNTFPTTTSIQNVISQVSNNRPLV 265
Query: 147 DSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQDELSQRLARLRQA 195
+ +V G +T+AL S P +S+ + E+S+ LAR+ A
Sbjct: 266 QHITNKVHQNFGANVTLALGSSP-------IMSEIESEVSE-LARIPNA 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.120 0.301
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,910,887
Number of Sequences: 539616
Number of extensions: 1824483
Number of successful extensions: 10016
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 9840
Number of HSP's gapped (non-prelim): 312
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)