Query psy15948
Match_columns 196
No_of_seqs 109 out of 653
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 17:09:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230|consensus 100.0 8.6E-48 1.9E-52 305.4 23.8 190 5-194 18-223 (224)
2 KOG3232|consensus 100.0 1.3E-45 2.9E-50 288.1 24.6 194 1-195 7-203 (203)
3 KOG3231|consensus 100.0 6.9E-41 1.5E-45 260.3 21.7 189 6-194 18-208 (208)
4 KOG3229|consensus 100.0 1.2E-38 2.7E-43 255.1 22.1 190 5-194 20-227 (227)
5 PF03357 Snf7: Snf7; InterPro 99.9 2.9E-26 6.4E-31 181.3 10.7 166 3-170 1-168 (171)
6 KOG2910|consensus 99.7 2.4E-15 5.3E-20 119.8 22.5 159 2-171 15-177 (209)
7 KOG1656|consensus 99.7 1E-14 2.2E-19 117.4 21.8 149 2-158 20-174 (221)
8 PTZ00446 vacuolar sorting prot 99.7 2E-14 4.3E-19 116.4 22.6 147 2-156 26-176 (191)
9 PTZ00464 SNF-7-like protein; P 99.6 1E-13 2.2E-18 114.2 20.2 164 2-170 17-190 (211)
10 COG5491 VPS24 Conserved protei 99.6 4E-13 8.7E-18 109.5 17.9 173 15-194 5-201 (204)
11 KOG2911|consensus 99.2 3.3E-09 7.2E-14 94.2 20.7 165 2-170 232-399 (439)
12 KOG1655|consensus 98.7 9.2E-06 2E-10 65.7 19.9 155 1-159 17-176 (218)
13 COG5491 VPS24 Conserved protei 97.9 0.00079 1.7E-08 55.3 14.0 37 77-113 69-105 (204)
14 PTZ00464 SNF-7-like protein; P 97.6 0.027 5.9E-07 46.6 20.7 50 47-96 72-121 (211)
15 PRK10698 phage shock protein P 97.6 0.012 2.5E-07 49.1 17.7 109 10-118 52-171 (222)
16 PF03398 Ist1: Regulator of Vp 97.2 0.0053 1.2E-07 48.8 10.4 149 7-160 3-164 (165)
17 TIGR02977 phageshock_pspA phag 97.0 0.15 3.2E-06 42.2 19.4 113 9-121 51-174 (219)
18 KOG3230|consensus 96.9 0.072 1.6E-06 43.4 14.5 148 2-158 22-175 (224)
19 KOG3231|consensus 96.8 0.16 3.5E-06 40.4 15.2 171 3-189 22-206 (208)
20 PF04012 PspA_IM30: PspA/IM30 96.8 0.23 4.9E-06 40.9 18.3 117 5-121 46-176 (221)
21 PF03357 Snf7: Snf7; InterPro 95.9 0.094 2E-06 40.9 9.5 147 11-164 2-156 (171)
22 COG1842 PspA Phage shock prote 94.6 2.3 5.1E-05 35.5 19.7 115 4-121 46-174 (225)
23 PTZ00446 vacuolar sorting prot 94.6 2.1 4.6E-05 34.9 15.1 29 8-36 25-53 (191)
24 KOG3229|consensus 91.5 7 0.00015 32.3 18.2 162 5-175 16-187 (227)
25 KOG1656|consensus 91.5 7.1 0.00015 32.2 14.4 134 22-170 52-193 (221)
26 KOG3232|consensus 86.2 16 0.00035 29.5 15.8 161 13-175 5-178 (203)
27 PRK15039 transcriptional repre 83.3 14 0.0003 26.5 8.2 49 55-103 8-56 (90)
28 COG1937 Uncharacterized protei 78.6 22 0.00047 25.5 8.4 47 55-101 8-54 (89)
29 KOG2911|consensus 77.7 58 0.0012 29.9 13.4 94 8-104 231-327 (439)
30 KOG2027|consensus 77.2 57 0.0012 29.6 16.2 138 20-162 11-162 (388)
31 PRK05431 seryl-tRNA synthetase 74.4 49 0.0011 30.2 10.9 69 3-77 28-97 (425)
32 PF02403 Seryl_tRNA_N: Seryl-t 71.8 34 0.00074 24.6 9.5 70 3-78 29-99 (108)
33 TIGR00414 serS seryl-tRNA synt 70.3 80 0.0017 28.7 11.3 72 3-78 30-101 (418)
34 PRK09720 cybC cytochrome b562; 69.7 12 0.00026 27.4 4.7 35 29-63 65-99 (100)
35 PF02583 Trns_repr_metal: Meta 68.9 37 0.0008 23.7 9.1 76 55-151 4-80 (85)
36 PF07361 Cytochrom_B562: Cytoc 65.6 18 0.00039 26.3 5.1 36 29-64 68-103 (103)
37 PF11500 Cut12: Spindle pole b 63.7 71 0.0015 25.1 9.0 61 14-78 74-137 (152)
38 PRK11352 regulator protein Frm 61.6 26 0.00057 25.0 5.2 47 55-101 8-54 (91)
39 COG0172 SerS Seryl-tRNA synthe 60.4 1.3E+02 0.0028 27.7 10.5 71 3-78 29-100 (429)
40 COG3783 CybC Soluble cytochrom 59.8 23 0.0005 25.8 4.5 34 30-63 66-99 (100)
41 PF05659 RPW8: Arabidopsis bro 58.5 85 0.0018 24.3 9.0 25 46-70 87-111 (147)
42 PLN02678 seryl-tRNA synthetase 55.6 1.7E+02 0.0037 27.0 11.0 70 3-77 33-102 (448)
43 PRK15058 cytochrome b562; Prov 52.3 35 0.00075 26.1 4.7 34 30-63 94-127 (128)
44 PRK14127 cell division protein 49.0 50 0.0011 24.5 5.0 17 142-158 24-40 (109)
45 PF06305 DUF1049: Protein of u 48.0 27 0.00059 22.8 3.2 25 5-29 43-67 (68)
46 PHA02698 hypothetical protein; 46.9 24 0.00053 24.5 2.8 29 144-174 8-36 (89)
47 KOG2910|consensus 43.8 1.8E+02 0.004 23.9 15.0 89 13-103 12-109 (209)
48 PLN02320 seryl-tRNA synthetase 42.4 3E+02 0.0065 25.9 10.7 69 3-77 93-161 (502)
49 PLN03086 PRLI-interacting fact 40.6 2.5E+02 0.0055 26.8 9.5 31 55-86 40-70 (567)
50 TIGR03544 DivI1A_domain DivIVA 34.1 41 0.0009 19.2 2.1 16 142-157 19-34 (34)
51 PF04100 Vps53_N: Vps53-like, 33.2 3.6E+02 0.0078 24.2 16.2 120 1-121 23-172 (383)
52 PF11068 YlqD: YlqD protein; 32.3 2.3E+02 0.0049 21.6 7.1 32 3-34 20-51 (131)
53 KOG0994|consensus 29.7 7.1E+02 0.015 26.5 14.4 15 180-194 1619-1633(1758)
54 PF04977 DivIC: Septum formati 27.4 1.9E+02 0.004 19.0 7.2 44 5-50 19-62 (80)
55 PF10078 DUF2316: Uncharacteri 26.5 1.8E+02 0.004 20.7 4.7 33 103-135 3-35 (89)
56 PF14842 FliG_N: FliG N-termin 25.0 1.2E+02 0.0027 21.9 3.8 62 89-155 35-100 (108)
57 PRK08404 V-type ATP synthase s 24.9 2.7E+02 0.0059 20.1 5.8 38 1-38 1-38 (103)
58 PF08165 FerA: FerA (NUC095) d 24.8 2.2E+02 0.0047 19.0 4.7 27 141-167 7-33 (66)
59 TIGR03504 FimV_Cterm FimV C-te 23.7 1.3E+02 0.0029 18.3 3.2 23 32-54 5-27 (44)
60 PF06207 DUF1002: Protein of u 23.5 3.3E+02 0.0071 22.7 6.5 47 100-162 147-193 (225)
61 PRK00888 ftsB cell division pr 23.1 3E+02 0.0065 20.0 6.6 32 4-35 28-59 (105)
62 PRK09343 prefoldin subunit bet 21.3 1.8E+02 0.0039 21.6 4.1 35 8-42 83-117 (121)
No 1
>KOG3230|consensus
Probab=100.00 E-value=8.6e-48 Score=305.44 Aligned_cols=190 Identities=30% Similarity=0.480 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRK 84 (196)
Q Consensus 5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~ 84 (196)
-+.|..+.|+|+|+..+++.++|++..+||+.+|.|+++++||+||+|||+|+|+.+|+.+++||.+|+.++++.+++.+
T Consensus 18 qRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~s 97 (224)
T KOG3230|consen 18 QRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTS 97 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHhhc
Q psy15948 85 VTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMA 164 (196)
Q Consensus 85 ~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~~~ 164 (196)
|+.+|+++|++|..||+.||||+++++|++|++|++.|++.+|||+|++|++.+++++|||+|++|+|||||||++++.+
T Consensus 98 ma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~q 177 (224)
T KOG3230|consen 98 MAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQ 177 (224)
T ss_pred HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCCCCCCcc---------cccc-------ccchHHHHHHHHHHhhc
Q psy15948 165 LPSGPDSIA---------ASSQ-------VSQEQDELSQRLARLRQ 194 (196)
Q Consensus 165 l~~~p~~~~---------~~~~-------~~~~~~~l~~RL~~Lr~ 194 (196)
|.++|+..+ .+.+ ....+|||++||++||.
T Consensus 178 L~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk 223 (224)
T KOG3230|consen 178 LSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRK 223 (224)
T ss_pred hccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhc
Confidence 999998211 1101 13569999999999996
No 2
>KOG3232|consensus
Probab=100.00 E-value=1.3e-45 Score=288.11 Aligned_cols=194 Identities=68% Similarity=0.951 Sum_probs=181.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTAL 80 (196)
Q Consensus 1 ~~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~ 80 (196)
|++++|+|+++.++|.|++++|+++|+.++.++|+|+++||++.|||||.|+||++++..+|+++++++++|+++++++.
T Consensus 7 le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTav 86 (203)
T KOG3232|consen 7 LENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAV 86 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcch
Q psy15948 81 TTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLE 160 (196)
Q Consensus 81 ~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~ 160 (196)
.+.+|+++|.+++++|....+.||+++|+.+|+.|+++|+.+++..++|.++|++......|+++||.|+.+|+||+|++
T Consensus 87 tmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlE 166 (203)
T KOG3232|consen 87 TMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLE 166 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchh
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HhhcCCCCC-CC--ccccccccchHHHHHHHHHHhhcC
Q psy15948 161 LTMALPSGP-DS--IAASSQVSQEQDELSQRLARLRQA 195 (196)
Q Consensus 161 ~~~~l~~~p-~~--~~~~~~~~~~~~~l~~RL~~Lr~~ 195 (196)
++..||... ++ ++++. ...++|+|..||++||+.
T Consensus 167 lnq~lp~~~~~a~~~~t~~-~~~e~d~L~qRLaaLR~~ 203 (203)
T KOG3232|consen 167 LNQELPQNVVPAISVKTSA-VVDEEDDLTQRLAALRAR 203 (203)
T ss_pred hhhcCCCCCCCCcCCCCcc-ccchhhHHHHHHHHHhcC
Confidence 999998653 22 33332 234459999999999963
No 3
>KOG3231|consensus
Probab=100.00 E-value=6.9e-41 Score=260.26 Aligned_cols=189 Identities=22% Similarity=0.366 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 6 FNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKV 85 (196)
Q Consensus 6 ~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~ 85 (196)
.+||.+.|.|+|+.++++++|++++.+||+.+..||-++||++||+||..|+|..+-+.+++++.+++.|-..+.++.++
T Consensus 18 ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km 97 (208)
T KOG3231|consen 18 RELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKM 97 (208)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHhhcC
Q psy15948 86 TQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMAL 165 (196)
Q Consensus 86 ~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~~~l 165 (196)
+++|+..++.|+.||+.|+|+++..+|.+|++..++|++++|||+|++|+.++.++|+||.+.+|+||||||||++++.+
T Consensus 98 ~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKm 177 (208)
T KOG3231|consen 98 AGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKM 177 (208)
T ss_pred HHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccc--ccccchHHHHHHHHHHhhc
Q psy15948 166 PSGPDSIAAS--SQVSQEQDELSQRLARLRQ 194 (196)
Q Consensus 166 ~~~p~~~~~~--~~~~~~~~~l~~RL~~Lr~ 194 (196)
.++|++.+.| .....+.+|+++.|++||+
T Consensus 178 a~~P~a~s~~~~st~kat~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 178 AKAPSARSLPSASTSKATISDIERQLAALRS 208 (208)
T ss_pred ccCCccCCCCccccCCCcHHHHHHHHHHhcC
Confidence 9999855544 2345678999999999985
No 4
>KOG3229|consensus
Probab=100.00 E-value=1.2e-38 Score=255.07 Aligned_cols=190 Identities=18% Similarity=0.297 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRK 84 (196)
Q Consensus 5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~ 84 (196)
-..||...|.|+|+++.+++++++....||+++|+|+...|++|||++|+.|+++.++|..++||+||+++|..+.++..
T Consensus 20 q~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r 99 (227)
T KOG3229|consen 20 QSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLR 99 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHhhc
Q psy15948 85 VTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMA 164 (196)
Q Consensus 85 ~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~~~ 164 (196)
++++|++++.+|+.||+.+.+|++..||.+|+++|++.||++||++|+|+++.+.++.++++|++|++|+-+|..+-...
T Consensus 100 ~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~ 179 (227)
T KOG3229|consen 100 VAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGE 179 (227)
T ss_pred HHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999877666
Q ss_pred CCCCCCC----ccc----cc-----cc-----cchHHHHHHHHHHhhc
Q psy15948 165 LPSGPDS----IAA----SS-----QV-----SQEQDELSQRLARLRQ 194 (196)
Q Consensus 165 l~~~p~~----~~~----~~-----~~-----~~~~~~l~~RL~~Lr~ 194 (196)
+|.+|.. +|+ |. .. .+...+++.||++||+
T Consensus 180 ~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs 227 (227)
T KOG3229|consen 180 APLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS 227 (227)
T ss_pred CCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence 6666652 121 10 01 1235788889999995
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.94 E-value=2.9e-26 Score=181.34 Aligned_cols=166 Identities=32% Similarity=0.440 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTT 82 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~ 82 (196)
.+|+.|+.+.+.|++++.+|+...+++..+||+++++|+...|++|++..++.+++..+++....+|+++..+|+++..+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchH-
Q psy15948 83 RKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLEL- 161 (196)
Q Consensus 83 ~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~- 161 (196)
..+..+|+.++++|+.+|+.+++++|..+|++|.++++.++..+++|++.++.. .++++++++++++++++|++.+.
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~ 158 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE 158 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999998888765 34577899999999999999988
Q ss_pred -hhcCCCCCC
Q psy15948 162 -TMALPSGPD 170 (196)
Q Consensus 162 -~~~l~~~p~ 170 (196)
...||++|+
T Consensus 159 ~~~~lp~~P~ 168 (171)
T PF03357_consen 159 EKQQLPSVPS 168 (171)
T ss_dssp -SS-SS---H
T ss_pred ccccCCcCCC
Confidence 777887775
No 6
>KOG2910|consensus
Probab=99.73 E-value=2.4e-15 Score=119.85 Aligned_cols=159 Identities=18% Similarity=0.307 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHH
Q psy15948 2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINY-LRMSARVDA---VASRVQ 77 (196)
Q Consensus 2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l-~~~~aqL~~---v~~~l~ 77 (196)
|++|+.|+.+.+.|-+..+++++....++..+|++++.|..+.|+.+.| ++++...+ .++..||.. +.+.|+
T Consensus 15 DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLK----kKryQE~Ll~qt~~qL~nlEqmvsdiE 90 (209)
T KOG2910|consen 15 DRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLK----KKRYQEELLTQTDNQLINLEQMVSDIE 90 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999777776655 77777776 667777765 456789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHh
Q psy15948 78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEA 157 (196)
Q Consensus 78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~ 157 (196)
+.....+|+.+++.++.+++++|+.|+++.|.++|++-...+++.+-+.+|+++.|++ ++|+++.++++-+..|.
T Consensus 91 ft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~dEddi~~EldaLese~ 165 (209)
T KOG2910|consen 91 FTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----EDEDDILAELDALESEL 165 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998998888885 46777888888777776
Q ss_pred cchHhhcCCCCCCC
Q psy15948 158 GLELTMALPSGPDS 171 (196)
Q Consensus 158 ~~~~~~~l~~~p~~ 171 (196)
..+ .++|.+|+.
T Consensus 166 ~~e--~e~PevPs~ 177 (209)
T KOG2910|consen 166 EVE--AELPEVPST 177 (209)
T ss_pred hhh--hhcCCCCCC
Confidence 554 578888874
No 7
>KOG1656|consensus
Probab=99.70 E-value=1e-14 Score=117.40 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q psy15948 2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLK-TKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASR---VQ 77 (196)
Q Consensus 2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~-iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~---l~ 77 (196)
.++|-.||.+..-|.+....|++....+... +++...+|. |...+.|-|+|.+..++.+....|.++..| |+
T Consensus 20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNK----R~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE 95 (221)
T KOG1656|consen 20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNK----RMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3689999999999999999999998888544 888888866 555566667888999999999999999988 79
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccC--CCCchhhHHHHHHHHHH
Q psy15948 78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVT--TSVPQNDVDSLMKQVAD 155 (196)
Q Consensus 78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~--~~~~eeevd~lv~qv~~ 155 (196)
++..+..+..+|+.++++|+.+++.||+++|..+|+++..|.+.+ +-|+++++.+.+ .+.||||...+++.+.+
T Consensus 96 nA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a----~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeq 171 (221)
T KOG1656|consen 96 NANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVA----EEISEAISAPVGFGADFDEDELMAELDELEQ 171 (221)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH----HHHHHHHhCccccccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999853 457888888765 34788888888888776
Q ss_pred Hhc
Q psy15948 156 EAG 158 (196)
Q Consensus 156 E~~ 158 (196)
|..
T Consensus 172 eel 174 (221)
T KOG1656|consen 172 EEL 174 (221)
T ss_pred HHH
Confidence 653
No 8
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.69 E-value=2e-14 Score=116.37 Aligned_cols=147 Identities=12% Similarity=0.204 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHH
Q psy15948 2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIR-QKNQSINYLRMSARVDAV---ASRVQ 77 (196)
Q Consensus 2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr-~rk~~~~l~~~~aqL~~v---~~~l~ 77 (196)
.++|+.||.+...|++...+|+....++...+|+++++|+...|. .++| +|-+..++.++.+++..+ ...|+
T Consensus 26 ~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al----~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE 101 (191)
T PTZ00446 26 YKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAK----ILLKRKKLYEQEIENILNNRLTLEDNMINLE 101 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999965544 4444 444555556666666654 55689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHH
Q psy15948 78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADE 156 (196)
Q Consensus 78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E 156 (196)
++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+- |+++++.+.....||+|++++++.+..|
T Consensus 102 ~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~E----IseaLs~~~~~~~DEdELe~ELe~Le~e 176 (191)
T PTZ00446 102 NMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEE----INQALSFNLLNNVDDDEIDKELDLLKEQ 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997544 5555555433346788888888877654
No 9
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.63 E-value=1e-13 Score=114.15 Aligned_cols=164 Identities=12% Similarity=0.180 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy15948 2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI----NYLRMSARVDAVASRVQ 77 (196)
Q Consensus 2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~----~l~~~~aqL~~v~~~l~ 77 (196)
.++|-.||.....|++.+.+++.+..+.+..+++.-..++ ...|..|..++|.||... +++....+|+.+...|+
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~-~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQ-SRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999988877777766665432222 235777888888766444 45666777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccC--CCCchhhHHHHHHHHHH
Q psy15948 78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVT--TSVPQNDVDSLMKQVAD 155 (196)
Q Consensus 78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~--~~~~eeevd~lv~qv~~ 155 (196)
++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+- |+++|....+ .+.||+|++++++.+..
T Consensus 96 ~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~E----I~e~Ls~~~~~~~~~DEdELe~ELe~Le~ 171 (211)
T PTZ00464 96 SVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQE----IQEIMGRAYDVPDDIDEDEMLGELDALDF 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997544 5555555432 34688899999998888
Q ss_pred HhcchHh----hcCCCCCC
Q psy15948 156 EAGLELT----MALPSGPD 170 (196)
Q Consensus 156 E~~~~~~----~~l~~~p~ 170 (196)
|...+.. ...+++|+
T Consensus 172 e~~~e~~~~~l~~~~~~p~ 190 (211)
T PTZ00464 172 DMEKEADASYLADALAVPG 190 (211)
T ss_pred HHhccccchhhhccccCCC
Confidence 8643222 34556665
No 10
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.56 E-value=4e-13 Score=109.53 Aligned_cols=173 Identities=28% Similarity=0.285 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 15 LERNSKRCEKEEKAEKLKTKKAIQKGNL--EVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGV 92 (196)
Q Consensus 15 l~Re~~kle~ee~k~~~~iKka~kkg~~--~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~ 92 (196)
+++++.++-.+.+...+...+..++-.. ...+++++.+.+.+++..|+...+ ++|++.-++....-+|.++
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~-------sRLqs~~~~~~e~~~m~~v 77 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASI-------SRLQSLDTMLFEKVVMRQV 77 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777666654432 334555555555555555555544 5555555555555555666
Q ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHHHhhhhhHH---HHHHhhhccccC--CCCchhhHHHHHHHHHHHhcchHhhcCC
Q psy15948 93 VKAMDAAMKSMN-LEKISGLMDKFEEQFEDLDVQS---SYMENTMSQSVT--TSVPQNDVDSLMKQVADEAGLELTMALP 166 (196)
Q Consensus 93 ~~~m~~~n~~m~-l~~i~~~m~~f~k~~~~~~~~~---e~m~d~m~~~~~--~~~~eeevd~lv~qv~~E~~~~~~~~l~ 166 (196)
+..|...+.+|| ++.|.++|+.|+..+.-++... ++|.+.++.+.+ ..++.+++|++|++|++|+|+++.....
T Consensus 78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~ 157 (204)
T COG5491 78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ 157 (204)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence 666666667777 8999999999999999999998 788777777764 3457799999999999999999985444
Q ss_pred CCCC------Ccc---cccc-------ccchHHHHHHHHHHhhc
Q psy15948 167 SGPD------SIA---ASSQ-------VSQEQDELSQRLARLRQ 194 (196)
Q Consensus 167 ~~p~------~~~---~~~~-------~~~~~~~l~~RL~~Lr~ 194 (196)
+.|. +.| +|.+ +...++.|..||..|++
T Consensus 158 ~~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~ 201 (204)
T COG5491 158 SLPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPA 201 (204)
T ss_pred cchhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence 4443 111 1111 12358999999999985
No 11
>KOG2911|consensus
Probab=99.22 E-value=3.3e-09 Score=94.25 Aligned_cols=165 Identities=15% Similarity=0.226 Sum_probs=139.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALT 81 (196)
Q Consensus 2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~ 81 (196)
|=.|.+|+.+.-.|.|++..|+.+-++...+++.+++.|....|..|++.--+.-|-..+....-.+|.+|-.+|.++.+
T Consensus 232 D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~ 311 (439)
T KOG2911|consen 232 DGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQT 311 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45688999999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCC--CCchhhHHHHHHHHHHHhc
Q psy15948 82 TRKVTQSMSGVVKAMDAAMK-SMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTT--SVPQNDVDSLMKQVADEAG 158 (196)
Q Consensus 82 ~~~~~~~m~~~~~~m~~~n~-~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~--~~~eeevd~lv~qv~~E~~ 158 (196)
+.-+..+++.++.+|+.++. ...++++..+|++...-++. ++-++++|.+..-. +.++|+++.++..++.+..
T Consensus 312 nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~----~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~ 387 (439)
T KOG2911|consen 312 NKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDR----QEEVEDALASYNVNNIDFEDEDLEKELEDLEADEK 387 (439)
T ss_pred cHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhh----HHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccc
Confidence 99999999999999999999 56788899999999988885 45678888876533 4567788888888776655
Q ss_pred chHhhcCCCCCC
Q psy15948 159 LELTMALPSGPD 170 (196)
Q Consensus 159 ~~~~~~l~~~p~ 170 (196)
-+-+-.+|..|.
T Consensus 388 k~e~~~lp~~~~ 399 (439)
T KOG2911|consen 388 KNEDLVLPLNSV 399 (439)
T ss_pred cCCccCCCCCCc
Confidence 332223344443
No 12
>KOG1655|consensus
Probab=98.69 E-value=9.2e-06 Score=65.66 Aligned_cols=155 Identities=17% Similarity=0.242 Sum_probs=118.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy15948 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGN-LEVARIHAENAIRQKNQSINY----LRMSARVDAVASR 75 (196)
Q Consensus 1 ~~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~-~~~aki~Ak~lvr~rk~~~~l----~~~~aqL~~v~~~ 75 (196)
|.++|-.+......++..+.+|+.+--+.+.+|++. +-|. ..+.|.-|=.+++.|+.+.+. +.-+=.|+.+.+.
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t 95 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT 95 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 356788888889999999999999999999999988 4443 455666666666655544332 2222235566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHH
Q psy15948 76 VQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVAD 155 (196)
Q Consensus 76 l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~ 155 (196)
.++..-+...+.+|+.+.+.|+...+.+++++|...=+++.-=|+..+-++|.+.-..+.+. .+|++.+.+++-+.+
T Consensus 96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe---ide~dL~aELdaL~~ 172 (218)
T KOG1655|consen 96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD---IDEADLDAELDALGQ 172 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---cCHHHHHHHHHHHHh
Confidence 77777888889999999999999999999999988888888777777777776666555543 678888999999877
Q ss_pred Hhcc
Q psy15948 156 EAGL 159 (196)
Q Consensus 156 E~~~ 159 (196)
|.-.
T Consensus 173 E~d~ 176 (218)
T KOG1655|consen 173 ELDM 176 (218)
T ss_pred Hhhc
Confidence 7654
No 13
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=97.86 E-value=0.00079 Score=55.28 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy15948 77 QTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMD 113 (196)
Q Consensus 77 ~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~ 113 (196)
....++.++++.|.+++..|..+.....+++.-.|+.
T Consensus 69 ~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~ 105 (204)
T COG5491 69 FEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQF 105 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666655555555555444444
No 14
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.63 E-value=0.027 Score=46.62 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 47 IHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAM 96 (196)
Q Consensus 47 i~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m 96 (196)
.|=+++-+...+..++..+...++.......+..++..-+.+|++..+-|
T Consensus 72 ~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i 121 (211)
T PTZ00464 72 MYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL 121 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444455555555555555555555555555555555555555555444
No 15
>PRK10698 phage shock protein PspA; Provisional
Probab=97.62 E-value=0.012 Score=49.10 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy15948 10 FAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARI-------HAENAIRQKNQSINYL----RMSARVDAVASRVQT 78 (196)
Q Consensus 10 ~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki-------~Ak~lvr~rk~~~~l~----~~~aqL~~v~~~l~~ 78 (196)
-..+.++|+...++....+...++..|+.+|+-+-||- |+..+-..+.+..... .+..++..+..+|..
T Consensus 52 A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 52 AEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999998 8888777777666553 445666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy15948 79 ALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQ 118 (196)
Q Consensus 79 a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~ 118 (196)
+.+-..+..+=..++.+..++|..+.--.....|..|++=
T Consensus 132 ak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rm 171 (222)
T PRK10698 132 TRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESF 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 7777777776666666666666666555555666665543
No 16
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=97.20 E-value=0.0053 Score=48.84 Aligned_cols=149 Identities=17% Similarity=0.307 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 7 NLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVT 86 (196)
Q Consensus 7 ~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~ 86 (196)
.||..+..|.-..++.....+..+.+|-..++.|+.+.|++-+.++|+-.+...-|.-+.--.+-+..++.........-
T Consensus 3 ~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~p 82 (165)
T PF03398_consen 3 QLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKECP 82 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Confidence 57888889999999999999999999999999999999999999999999999999888888888888876666555444
Q ss_pred HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccc-----------cCC-CCchhhHHHHHHHH
Q psy15948 87 QSMSGVVKAMDAAMKS-MNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQS-----------VTT-SVPQNDVDSLMKQV 153 (196)
Q Consensus 87 ~~m~~~~~~m~~~n~~-m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~-----------~~~-~~~eeevd~lv~qv 153 (196)
..+..+...+=.+... -++|++..+-.-|..-+-+ +++..++++. ... .-+++.++..+..|
T Consensus 83 ~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~-----~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eI 157 (165)
T PF03398_consen 83 PELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGK-----EFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEI 157 (165)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-H-----HHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCH-----HHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 4455555544344444 5888876665554433222 3333333321 111 12457788999999
Q ss_pred HHHhcch
Q psy15948 154 ADEAGLE 160 (196)
Q Consensus 154 ~~E~~~~ 160 (196)
+.|+|++
T Consensus 158 A~e~~i~ 164 (165)
T PF03398_consen 158 AKEYGIP 164 (165)
T ss_dssp HHHCT-S
T ss_pred HHHcCCC
Confidence 9999875
No 17
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.02 E-value=0.15 Score=42.23 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHHHHHHH
Q psy15948 9 KFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQS-------I----NYLRMSARVDAVASRVQ 77 (196)
Q Consensus 9 r~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~-------~----~l~~~~aqL~~v~~~l~ 77 (196)
.-..+.++|+...++....+...+++.|+.+|+-+.||-.+..-....... . ....+..+|..+..+++
T Consensus 51 ~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~ 130 (219)
T TIGR02977 51 IADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLA 130 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999988886644322222222 1 22334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q psy15948 78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFED 121 (196)
Q Consensus 78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~ 121 (196)
.+.+......+=..++..-..+|..+.--.+...+..|++-.++
T Consensus 131 ~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 131 EARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 55555554333333444444444444322334445555443333
No 18
>KOG3230|consensus
Probab=96.94 E-value=0.072 Score=43.41 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKA---IQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQT 78 (196)
Q Consensus 2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka---~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~ 78 (196)
..++++|-+....++-+-++|=-+-|+.-+.=.-. +-..+.--.|-|.+.++..|. ++...+-++.++-++-..
T Consensus 22 ~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka---qiqaVSl~iQtlkss~sm 98 (224)
T KOG3230|consen 22 NKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA---QIQAVSLRIQTLKSSTSM 98 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHH
Confidence 45666666666666666666655555432211100 001123334556666555544 345556677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHH-hCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHH
Q psy15948 79 ALTTRKVTQSMSGVVKAMDA--AMK-SMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVAD 155 (196)
Q Consensus 79 a~~~~~~~~~m~~~~~~m~~--~n~-~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~ 155 (196)
+.+|.-++++|.+.++.|.- +.+ .+..++-. -+.++..+|+ .+.|+|+|++..++++-++=|..+++.+=-
T Consensus 99 a~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQs-e~Mdm~~Emm-----~daIDdal~~~edEEEtd~lvnqVLDEiGv 172 (224)
T KOG3230|consen 99 AQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQS-EIMDMKEEMM-----DDAIDDALGDDEDEEETDDLVNQVLDEIGV 172 (224)
T ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH-HHHHHHHHHH-----HHHHHHhhcccchhHHHHHHHHHHHHHHcc
Confidence 77777777777766655521 111 11122222 2233333333 467778887666666666666666666544
Q ss_pred Hhc
Q psy15948 156 EAG 158 (196)
Q Consensus 156 E~~ 158 (196)
.++
T Consensus 173 dl~ 175 (224)
T KOG3230|consen 173 DLA 175 (224)
T ss_pred cHH
Confidence 444
No 19
>KOG3231|consensus
Probab=96.80 E-value=0.16 Score=40.43 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLK---------TKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVA 73 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~---------iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~ 73 (196)
++-.+|-+..|.++++-++||.+-++.-.. +|+.+.-.+ ...|.||- ..+...+..|=-.+.
T Consensus 22 kt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRk-QKtrt~a~--------s~ki~s~~~QnK~M~ 92 (208)
T KOG3231|consen 22 KTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRK-QKTRTFAV--------SSKITSMSTQNKVMN 92 (208)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH-hhhhhhhh--------hhhhhhhHHHHHHHH
Confidence 355677888889999999998888876432 222221111 12344443 445555555556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHH
Q psy15948 74 SRVQTALTTRKVTQSMSGVVKAM--DAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMK 151 (196)
Q Consensus 74 ~~l~~a~~~~~~~~~m~~~~~~m--~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~ 151 (196)
+++..+.++...++.|+...+.| .++..+|.-=+...-=.++..+ |+.+.++|.++.+.+.++...-|..+++
T Consensus 93 s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeE-----MiNDTLDdild~sgDeeEs~aiVNqVLD 167 (208)
T KOG3231|consen 93 SQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEE-----MINDTLDDILDGSGDEEESQAIVNQVLD 167 (208)
T ss_pred HHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHH-----HHHhhHHHHhcCCCcHHHHHHHHHHHHH
Confidence 77777777777888888877777 3444444332222222334444 4458899999999887777888899999
Q ss_pred HHHHHhcchHhhcCCCC-CC--CccccccccchHHHHHHHH
Q psy15948 152 QVADEAGLELTMALPSG-PD--SIAASSQVSQEQDELSQRL 189 (196)
Q Consensus 152 qv~~E~~~~~~~~l~~~-p~--~~~~~~~~~~~~~~l~~RL 189 (196)
.|==|+...+.. +|++ |. +...+..-.+-++.| ++|
T Consensus 168 EIGIEisgKma~-~P~a~s~~~~st~kat~~Die~QL-a~L 206 (208)
T KOG3231|consen 168 EIGIEISGKMAK-APSARSLPSASTSKATISDIERQL-AAL 206 (208)
T ss_pred Hhhhhhcchhcc-CCccCCCCccccCCCcHHHHHHHH-HHh
Confidence 999999887754 4433 33 333333323344555 444
No 20
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.79 E-value=0.23 Score=40.86 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q psy15948 5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLR-----------MSARVDAVA 73 (196)
Q Consensus 5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~-----------~~aqL~~v~ 73 (196)
+-......+.+++++..++....+...+++.|+.+|+-+.|+.++........+...|.. ++.++..+.
T Consensus 46 ~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~ 125 (221)
T PF04012_consen 46 LARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELE 125 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778889999999999999999999999999999999888877776666555433 333344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhh
Q psy15948 74 SRVQTALTTRKVTQSMSGVVKAMDAAMKSM---NLEKISGLMDKFEEQFED 121 (196)
Q Consensus 74 ~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m---~l~~i~~~m~~f~k~~~~ 121 (196)
.+|....+-..+..+-..++.+-..++..+ ++......+..++.....
T Consensus 126 ~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~ 176 (221)
T PF04012_consen 126 AKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEE 176 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHH
Confidence 555555555555555444444444444433 333334444444444443
No 21
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=95.90 E-value=0.094 Score=40.89 Aligned_cols=147 Identities=20% Similarity=0.230 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 11 AAKELERNSKRCEKEEKAEKLKTKKA---IQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQ 87 (196)
Q Consensus 11 ~~r~l~Re~~kle~ee~k~~~~iKka---~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~ 87 (196)
++..|...+.+|++...++..+|++. +++--..+-+..|+.+.|.++.. .+...++.....+|+........+.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~---~k~~~~~~~~~~~l~~~~~~ie~a~ 78 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRL---EKQLEKLLNQLSNLESVLLQIETAQ 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998865 33333344556777777766654 4445567788888889899888888
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHhhhhh---HHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHh
Q psy15948 88 SMSGVVKAMDAAMKSMNLEKISGLMD--KFEEQFEDLDV---QSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELT 162 (196)
Q Consensus 88 ~m~~~~~~m~~~n~~m~l~~i~~~m~--~f~k~~~~~~~---~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~ 162 (196)
....+..+|+..++.+. ++.+.|+ +.+.-++.+.- ..+.++++|++. .....+.-|+.++..++++.-+..
T Consensus 79 ~~~~v~~al~~~~~~Lk--~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~--~~~~~~~dd~ele~eL~~l~~e~~ 154 (171)
T PF03357_consen 79 SNQQVVKALKQSSKALK--KINKQINLDKVEKLMDDFQEEMEDQDEISEALSDS--MDQVDDVDDEELEEELEQLEDEIE 154 (171)
T ss_dssp HHHHHSSS----SHHHH--HHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCCCCHHHHHHHHHHHHHHHh
Confidence 88888888888776643 3443333 23333332211 112222222221 011134556677777777766554
Q ss_pred hc
Q psy15948 163 MA 164 (196)
Q Consensus 163 ~~ 164 (196)
..
T Consensus 155 ~~ 156 (171)
T PF03357_consen 155 EE 156 (171)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 22
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.58 E-value=2.3 Score=35.50 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Q psy15948 4 HLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINY-----------LRMSARVDAV 72 (196)
Q Consensus 4 ~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l-----------~~~~aqL~~v 72 (196)
++-.+.-..+.++|+...+.....+...+++.|+.+||.+.|+-.+...-..-+....+ .+++.++..+
T Consensus 46 ~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~L 125 (225)
T COG1842 46 ALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAAL 125 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677899999999999999999999999999999887776554433322222222 2333344444
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q psy15948 73 ASRV---QTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFED 121 (196)
Q Consensus 73 ~~~l---~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~ 121 (196)
..+| .+-..+.....+..+++.-|..+...++. ...|..|++--++
T Consensus 126 e~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~k 174 (225)
T COG1842 126 EQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEK 174 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHH
Confidence 4444 33344444445566666667777777777 4555555544444
No 23
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=94.58 E-value=2.1 Score=34.94 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 8 LKFAAKELERNSKRCEKEEKAEKLKTKKA 36 (196)
Q Consensus 8 Lr~~~r~l~Re~~kle~ee~k~~~~iKka 36 (196)
.+.++-.|...+..|++-+..+..+|.+.
T Consensus 25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e 53 (191)
T PTZ00446 25 IYKAILKNREAIDALEKKQVQVEKKIKQL 53 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777776554
No 24
>KOG3229|consensus
Probab=91.52 E-value=7 Score=32.30 Aligned_cols=162 Identities=9% Similarity=0.125 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRK 84 (196)
Q Consensus 5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~ 84 (196)
..+++.-+|.=-|++.+.=+.-..+..++++++|.-=...=+.-++- .=|++-+-.+.-.+|-.=..+|. .
T Consensus 16 ~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~i---LAKEiv~srk~v~Rly~sKAqln------S 86 (227)
T KOG3229|consen 16 VREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRI---LAKEIVQSRKAVKRLYESKAQLN------S 86 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH---HHHHHHHHHHHHHHHHHhHHHHh------h
Confidence 34455555555555555556666677777777764332222222211 22223333333333322223332 2
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH---------HHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHH
Q psy15948 85 VTQSMSGVVKAMDAAMKSMNLEKISGLMDK---------FEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVAD 155 (196)
Q Consensus 85 ~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~---------f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~ 155 (196)
+.-.|+..-..+.-++..-+-.+|-+.|+. .-.++.+-=++.-+|...++..++...|.+|.++.++.-.+
T Consensus 87 v~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVd 166 (227)
T KOG3229|consen 87 VSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVD 166 (227)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 333344444444333333333333333333 23344444466677888899998887777778899999999
Q ss_pred HhcchHhh-cCCCCCCCcccc
Q psy15948 156 EAGLELTM-ALPSGPDSIAAS 175 (196)
Q Consensus 156 E~~~~~~~-~l~~~p~~~~~~ 175 (196)
.+...+.+ .++.+|.++...
T Consensus 167 kIL~~it~~~~~~~p~a~~~~ 187 (227)
T KOG3229|consen 167 KILTEITGEKAGEAPLAVTAT 187 (227)
T ss_pred HHHHHHhccccccCCcchHHH
Confidence 88887753 445555555444
No 25
>KOG1656|consensus
Probab=91.46 E-value=7.1 Score=32.22 Aligned_cols=134 Identities=11% Similarity=0.154 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q psy15948 22 CEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAM--DAA 99 (196)
Q Consensus 22 le~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m--~~~ 99 (196)
..+--.+-+.-+..|+++. |.|=++|.+.-.....+..-.--|.+.....++...+..-+++|+.+-..| .+|
T Consensus 52 A~k~~tkNKR~AlqaLkrK-----K~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkV 126 (221)
T KOG1656|consen 52 ARKYGTKNKRMALQALKRK-----KRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKV 126 (221)
T ss_pred HHHHhhhhHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHH
Confidence 3344444555566666654 568888888887777776656667777778888888888888898888887 677
Q ss_pred HHhCC-HHHHHHHHHHHHHHHhhhhhHHHHHHhhhc--cccCCCCchhhHHHHHHHHHHHhcchHhh---cCCCCCC
Q psy15948 100 MKSMN-LEKISGLMDKFEEQFEDLDVQSSYMENTMS--QSVTTSVPQNDVDSLMKQVADEAGLELTM---ALPSGPD 170 (196)
Q Consensus 100 n~~m~-l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~--~~~~~~~~eeevd~lv~qv~~E~~~~~~~---~l~~~p~ 170 (196)
...|| +..=+.++.+++ +.|+.=+. ..+|+++-..|.|+|-+..++.-.+++.. .||.+|+
T Consensus 127 dd~MdeI~eQqe~a~eIs----------eAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs 193 (221)
T KOG1656|consen 127 DDLMDEIAEQQEVAEEIS----------EAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPS 193 (221)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence 77775 333344555554 35555443 33676777788888888888888777654 3444444
No 26
>KOG3232|consensus
Probab=86.20 E-value=16 Score=29.46 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q psy15948 13 KELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQ-KNQSINYLRMS--------ARVDAVASRVQTALTTR 83 (196)
Q Consensus 13 r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~-rk~~~~l~~~~--------aqL~~v~~~l~~a~~~~ 83 (196)
-.|++.+..|..-.+.+....++|=|--..+.+| ++-+|.+ ...+.|.|.-- -++--+++++..-.+-.
T Consensus 5 ~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K--~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRv 82 (203)
T KOG3232|consen 5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAK--LKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARV 82 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888999998988887766666655 4555665 33444444322 23346788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHH---HHHHhhhccccCCCCchhhHHHHHHHHHHHhcch
Q psy15948 84 KVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQS---SYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLE 160 (196)
Q Consensus 84 ~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~---e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~ 160 (196)
+.+-.|.++++.|.++-+.|+-.=-.-.+..++.-|++..-.= ++=...|+..+++.+.-.--..-|+.+.++..=+
T Consensus 83 qTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADe 162 (203)
T KOG3232|consen 83 QTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADE 162 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHH
Confidence 9999999999999999888775332222333333333221111 1111234444444333333356777777777766
Q ss_pred HhhcCCC-CCCCcccc
Q psy15948 161 LTMALPS-GPDSIAAS 175 (196)
Q Consensus 161 ~~~~l~~-~p~~~~~~ 175 (196)
.+-.|.. .|..+++.
T Consensus 163 aGlElnq~lp~~~~~a 178 (203)
T KOG3232|consen 163 AGLELNQELPQNVVPA 178 (203)
T ss_pred hchhhhhcCCCCCCCC
Confidence 6655543 44455443
No 27
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=83.29 E-value=14 Score=26.47 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15948 55 QKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSM 103 (196)
Q Consensus 55 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m 103 (196)
+++-..||-+..+|+.+|..-++.-.....+...+..+-.++.++...+
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~v 56 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREV 56 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567789999999999999999988888888888888888777665544
No 28
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.60 E-value=22 Score=25.48 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 55 QKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMK 101 (196)
Q Consensus 55 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~ 101 (196)
+++..+|+-+...|+.++..-|+.-.-...|...+.-+..++++++.
T Consensus 8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~ 54 (89)
T COG1937 8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMR 54 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999988888888888888877776554
No 29
>KOG2911|consensus
Probab=77.70 E-value=58 Score=29.90 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNL---EVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRK 84 (196)
Q Consensus 8 Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~---~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~ 84 (196)
+-..+-.|.+-..+|.++-..+.++|+++=.+=+. ++=|..|....|.|+-.. +-..++.+...+|++..++..
T Consensus 231 ~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~e---K~~er~~~~l~~l~~vl~~Id 307 (439)
T KOG2911|consen 231 IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLE---KDLERKVSSLNNLETVLSQID 307 (439)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHH
Confidence 33455677888888999999999998887444331 223455555555544433 333444455555666666666
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q psy15948 85 VTQSMSGVVKAMDAAMKSMN 104 (196)
Q Consensus 85 ~~~~m~~~~~~m~~~n~~m~ 104 (196)
-+..=+-+-.+++.-+..++
T Consensus 308 ~s~~nkvvl~AyksGs~alK 327 (439)
T KOG2911|consen 308 NSQTNKVVLQAYKSGSEALK 327 (439)
T ss_pred hhcccHHHHHHHHHhHHHHH
Confidence 55555556666665555443
No 30
>KOG2027|consensus
Probab=77.17 E-value=57 Score=29.57 Aligned_cols=138 Identities=16% Similarity=0.251 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy15948 20 KRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVV-KAMDA 98 (196)
Q Consensus 20 ~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~-~~m~~ 98 (196)
+|-+-..++++.+|-..++.|+.+.|++=+..+||--+...-|.-+--=.+-|..++.....+...-..++.+. .+|=.
T Consensus 11 nKk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~EAVsSlifA 90 (388)
T KOG2027|consen 11 NKKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLKEAVSSLIFA 90 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHHHHHHHHHHH
Confidence 34455667888899999999999999999999999999888887777777778888877777776666665544 44555
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcccc------------CCC-CchhhHHHHHHHHHHHhcchHh
Q psy15948 99 AMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSV------------TTS-VPQNDVDSLMKQVADEAGLELT 162 (196)
Q Consensus 99 ~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~------------~~~-~~eeevd~lv~qv~~E~~~~~~ 162 (196)
+-..-+++++..+-+-|-+-.-+ ++..-+.+... ... -+.+-+..++..|+.|+++.+.
T Consensus 91 A~R~~EvpEL~~i~~~f~~kYGk-----~f~~~a~~l~p~~~Vn~kiiekLs~~~P~~e~k~k~lkEIA~ey~v~~~ 162 (388)
T KOG2027|consen 91 APRLSEVPELREIRDLFVKKYGK-----EFVKAAIELRPGNGVNRKIIEKLSVEAPPKELKEKYLKEIAKEYNVNWE 162 (388)
T ss_pred hccccccHHHHHHHHHHHHHHhH-----HHHHHHHhccccCCcCHHHHHHhcCCCCcHHHHHHHHHHHHHHhCCCcc
Confidence 56666799987776666544332 22222222211 111 2334458888889999987653
No 31
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=74.43 E-value=49 Score=30.17 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKG-NLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQ 77 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg-~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~ 77 (196)
+.|..|..+.|++..++..|..+.+.+-++|++..+.+ +.+..+.- .+.-..++..+..++..+..++.
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~------~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAE------VKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999866665 33332222 23333344444555555554443
No 32
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.84 E-value=34 Score=24.56 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKG-NLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQT 78 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg-~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~ 78 (196)
+.|+.|-.+.|.+..+...+..+.+.+-+.|.+..+.| +.+..+-- .+.-...+..+..++..+..++..
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e------~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAE------VKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999998 33322222 333444455555566666555543
No 33
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=70.32 E-value=80 Score=28.71 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQT 78 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~ 78 (196)
+.|+.|-.+.|++..+...|..+.+..-++|+...+.|+.+...+.+ +.+.-..++..+..++..+..++..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~----~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKK----ELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999998866555421111111 1333344555555555555555433
No 34
>PRK09720 cybC cytochrome b562; Provisional
Probab=69.68 E-value=12 Score=27.43 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 29 EKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYL 63 (196)
Q Consensus 29 ~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~ 63 (196)
+...+...+..|+.+.||..|+++.-+|++.-+-|
T Consensus 65 qID~A~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 65 QIDDALKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566778889999999999999999999887655
No 35
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=68.92 E-value=37 Score=23.75 Aligned_cols=76 Identities=16% Similarity=0.275 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhc
Q psy15948 55 QKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMS 134 (196)
Q Consensus 55 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~ 134 (196)
+++-..|+.+...|+.+|..-++.-.....+...+..+..+|.++... +.++.+...+.
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~---------------------vl~~hl~~c~~ 62 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKL---------------------VLEDHLEHCLV 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 456678899999999999999999888999988888888888765543 23455666666
Q ss_pred cccCC-CCchhhHHHHHH
Q psy15948 135 QSVTT-SVPQNDVDSLMK 151 (196)
Q Consensus 135 ~~~~~-~~~eeevd~lv~ 151 (196)
..... .+.++.+++++.
T Consensus 63 ~~~~~~~~~~~~i~el~~ 80 (85)
T PF02583_consen 63 EAIQDEEDREEAIEELIK 80 (85)
T ss_dssp CHCCTCCCHHHHHHHHHH
T ss_pred hHhcCcccHHHHHHHHHH
Confidence 55443 345555555544
No 36
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=65.62 E-value=18 Score=26.34 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 29 EKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLR 64 (196)
Q Consensus 29 ~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~ 64 (196)
....++..+..|+.+.||..++.+--+|+..-+.++
T Consensus 68 ~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 68 QIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 456788899999999999999999999998877653
No 37
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=63.69 E-value=71 Score=25.14 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 14 ELERNSKRCEKEEKAE---KLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQT 78 (196)
Q Consensus 14 ~l~Re~~kle~ee~k~---~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~ 78 (196)
+++....+.+.+..++ +.-+|..|++.+.++++.--+ +|.+..+...|-.++..+.++|..
T Consensus 74 eFe~Y~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~K----LkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 74 EFESYHEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEK----LKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777 456777888888887775544 788888888888888887777644
No 38
>PRK11352 regulator protein FrmR; Provisional
Probab=61.56 E-value=26 Score=25.01 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 55 QKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMK 101 (196)
Q Consensus 55 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~ 101 (196)
+++-..||.+...|+.+|..-|+.-.....+...+..+..++.++..
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~ 54 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMA 54 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55667899999999999999999988888898888888887776543
No 39
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.44 E-value=1.3e+02 Score=27.74 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIR-QKNQSINYLRMSARVDAVASRVQT 78 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr-~rk~~~~l~~~~aqL~~v~~~l~~ 78 (196)
+.++.|-...|.+.++...|....+.+-++|.++.++|.. ++..++. .+.-..++......++.+...++.
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-----~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED-----DAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5678899999999999999999999999999988888775 3333332 344444555555555555555433
No 40
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=59.82 E-value=23 Score=25.77 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 30 KLKTKKAIQKGNLEVARIHAENAIRQKNQSINYL 63 (196)
Q Consensus 30 ~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~ 63 (196)
..++.+.+..||.+.||.-|+.+.-+|+.+-+-|
T Consensus 66 iD~a~klaqeGnl~eAKaaak~l~d~Rn~YHkKy 99 (100)
T COG3783 66 IDKADKLAQEGNLDEAKAAAKTLKDTRNTYHKKY 99 (100)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhc
Confidence 4578889999999999999999999999876543
No 41
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=58.48 E-value=85 Score=24.34 Aligned_cols=25 Identities=4% Similarity=0.086 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 46 RIHAENAIRQKNQSINYLRMSARVD 70 (196)
Q Consensus 46 ki~Ak~lvr~rk~~~~l~~~~aqL~ 70 (196)
++.--|+.++.++..++..+...|.
T Consensus 87 k~~r~n~~kk~~y~~Ki~~le~~l~ 111 (147)
T PF05659_consen 87 KVRRWNLYKKPRYARKIEELEESLR 111 (147)
T ss_pred cccHHHHHhhHhHHHHHHHHHHHHH
Confidence 3334455555555555544444443
No 42
>PLN02678 seryl-tRNA synthetase
Probab=55.57 E-value=1.7e+02 Score=26.99 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQ 77 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~ 77 (196)
+.|+.|-...|++..+...+..+.+.+-+.|++..+.+. +...+.+ +.+.-..++..+..++..+..++.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~-~~~~l~~----~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKE-DATELIA----ETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-cHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999987433332 2222222 234444455555556665555554
No 43
>PRK15058 cytochrome b562; Provisional
Probab=52.35 E-value=35 Score=26.12 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 30 KLKTKKAIQKGNLEVARIHAENAIRQKNQSINYL 63 (196)
Q Consensus 30 ~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~ 63 (196)
...+...+..|+.+.||.-++++.-+|+++-+-|
T Consensus 94 ID~a~~la~~GkL~eAK~~a~~l~~lR~eYHkky 127 (128)
T PRK15058 94 IDGALKLANEGKVKEAQAAAEQLKTTRNAYHKKY 127 (128)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778899999999999999999999987654
No 44
>PRK14127 cell division protein GpsB; Provisional
Probab=48.97 E-value=50 Score=24.51 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=12.4
Q ss_pred chhhHHHHHHHHHHHhc
Q psy15948 142 PQNDVDSLMKQVADEAG 158 (196)
Q Consensus 142 ~eeevd~lv~qv~~E~~ 158 (196)
+.+|||+.+++|+++++
T Consensus 24 d~~EVD~FLd~V~~dye 40 (109)
T PRK14127 24 DQDEVDKFLDDVIKDYE 40 (109)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55778888888876665
No 45
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.00 E-value=27 Score=22.78 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 5 LFNLKFAAKELERNSKRCEKEEKAE 29 (196)
Q Consensus 5 i~~Lr~~~r~l~Re~~kle~ee~k~ 29 (196)
.+.+|.+.|.+.|+.++++++-.++
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888888888888776553
No 46
>PHA02698 hypothetical protein; Provisional
Probab=46.92 E-value=24 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHhcchHhhcCCCCCCCccc
Q psy15948 144 NDVDSLMKQVADEAGLELTMALPSGPDSIAA 174 (196)
Q Consensus 144 eevd~lv~qv~~E~~~~~~~~l~~~p~~~~~ 174 (196)
-+|+++|+++++. +.+++.+--.|.++|+
T Consensus 8 l~v~~lIDrmldd--vqvnGDlmPtp~p~pe 36 (89)
T PHA02698 8 LNVDELIDRMLDD--VQVNGDLMPTPEPTPE 36 (89)
T ss_pred cCHHHHHHHHHhc--cccCCcccCCCCCChh
Confidence 4688999999994 4455556555555444
No 47
>KOG2910|consensus
Probab=43.78 E-value=1.8e+02 Score=23.87 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q psy15948 13 KELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIR-QKNQSINYLRMS--------ARVDAVASRVQTALTTR 83 (196)
Q Consensus 13 r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr-~rk~~~~l~~~~--------aqL~~v~~~l~~a~~~~ 83 (196)
-+-+|-+-.+.++..++.+..|+.-+ -.+.=|.+|+++|| .|+-...++-=+ .|-+.--..|+.+.+..
T Consensus 12 td~DrAIL~lK~QRdkl~qyqkR~e~--~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdi 89 (209)
T KOG2910|consen 12 TDQDRAILSLKTQRDKLKQYQKRLEK--QLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDI 89 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677776666666665433 34556889999999 666555442222 22223334468888888
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q psy15948 84 KVTQSMSGVVKAMDAAMKSM 103 (196)
Q Consensus 84 ~~~~~m~~~~~~m~~~n~~m 103 (196)
..+.-=+.+..+++.-|..+
T Consensus 90 Eft~vqk~V~~gLk~GN~~l 109 (209)
T KOG2910|consen 90 EFTQVQKKVMEGLKQGNEAL 109 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877664
No 48
>PLN02320 seryl-tRNA synthetase
Probab=42.36 E-value=3e+02 Score=25.91 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQ 77 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~ 77 (196)
+.|+.+-...|.+..+...+..+.+.+-++|+...++.+.+. +.+ +.+.-..++..+..++..+..++.
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~--l~~----~~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQA--LVE----EGKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999999987222222222 111 233444455555555555554443
No 49
>PLN03086 PRLI-interacting factor K; Provisional
Probab=40.64 E-value=2.5e+02 Score=26.82 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 55 QKNQSINYLRMSARVDAVASRVQTALTTRKVT 86 (196)
Q Consensus 55 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~ 86 (196)
-|..+....+ .-+|++++.++.....+..+.
T Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 70 (567)
T PLN03086 40 QREAIEAAQR-SRRLDAIEAQIKADQQMQESL 70 (567)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 448888888887655555544
No 50
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=34.08 E-value=41 Score=19.25 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=13.7
Q ss_pred chhhHHHHHHHHHHHh
Q psy15948 142 PQNDVDSLMKQVADEA 157 (196)
Q Consensus 142 ~eeevd~lv~qv~~E~ 157 (196)
+.+|||..+++|.+++
T Consensus 19 ~~~eVD~fLd~v~~~~ 34 (34)
T TIGR03544 19 DAAEVDAFLDRVADDL 34 (34)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6789999999998864
No 51
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=33.20 E-value=3.6e+02 Score=24.20 Aligned_cols=120 Identities=9% Similarity=0.174 Sum_probs=70.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHH
Q psy15948 1 MENHLFNLKFAAKELERNSKRCEKEEKAEK-------LK--------------TKKAIQKGNLEVARIHAENAIRQKNQS 59 (196)
Q Consensus 1 ~~~~i~~Lr~~~r~l~Re~~kle~ee~k~~-------~~--------------iKka~kkg~~~~aki~Ak~lvr~rk~~ 59 (196)
+|+.|-.++..++.++.++...-++....- .. ||.-+.+.. ...+-+.+++-+.-..+
T Consensus 23 ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE-~~V~~it~dIk~LD~AK 101 (383)
T PF04100_consen 23 LDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESE-QMVQEITRDIKQLDNAK 101 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 356677888888888888887666554111 11 111111111 23444555555555555
Q ss_pred HHHHHHHHHHHHHHHH------HHHH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q psy15948 60 INYLRMSARVDAVASR------VQTA---LTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFED 121 (196)
Q Consensus 60 ~~l~~~~aqL~~v~~~------l~~a---~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~ 121 (196)
.++..+-.-|.-+.+= |+.. ..-.+++..+..+...+..+..+.++|+|......+..-...
T Consensus 102 rNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~ 172 (383)
T PF04100_consen 102 RNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNE 172 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHH
Confidence 5555555555544432 2222 223456677888999999999999999997776666654443
No 52
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=32.33 E-value=2.3e+02 Score=21.62 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTK 34 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iK 34 (196)
+.+-.+..+...++++...|+.+.++...+++
T Consensus 20 ~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 20 ELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888888888888888888777644
No 53
>KOG0994|consensus
Probab=29.73 E-value=7.1e+02 Score=26.50 Aligned_cols=15 Identities=33% Similarity=0.590 Sum_probs=10.7
Q ss_pred chHHHHHHHHHHhhc
Q psy15948 180 QEQDELSQRLARLRQ 194 (196)
Q Consensus 180 ~~~~~l~~RL~~Lr~ 194 (196)
....+|.+++..||.
T Consensus 1619 q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456778888877774
No 54
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.40 E-value=1.9e+02 Score=19.03 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy15948 5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAE 50 (196)
Q Consensus 5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak 50 (196)
+..++.+...++++...+..+-.++..+++.. +++.+...-+|+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l--~~~~~~ie~~AR 62 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL--KNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHH
Confidence 46778888888888888888888888777654 236665555555
No 55
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.51 E-value=1.8e+02 Score=20.73 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcc
Q psy15948 103 MNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQ 135 (196)
Q Consensus 103 m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~ 135 (196)
+|+.+...|-.++...+...|++.+.+-.-+.-
T Consensus 3 Ln~~Q~~~T~~ELq~nf~~~~ls~~~ia~dL~~ 35 (89)
T PF10078_consen 3 LNPEQRRATRQELQANFELSGLSLEQIAADLGT 35 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 578888999999999999999998887776665
No 56
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=24.97 E-value=1.2e+02 Score=21.88 Aligned_cols=62 Identities=6% Similarity=0.288 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhH----HHHHHhhhccccCCCCchhhHHHHHHHHHH
Q psy15948 89 MSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQ----SSYMENTMSQSVTTSVPQNDVDSLMKQVAD 155 (196)
Q Consensus 89 m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~----~e~m~d~m~~~~~~~~~eeevd~lv~qv~~ 155 (196)
+...+..|..+ ..++...+..++.+|.......+.. .+.+...+..++ +++.++.++++|..
T Consensus 35 i~~i~~~ma~l-~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~al----g~~~a~~il~~~~~ 100 (108)
T PF14842_consen 35 IERISREMAKL-GSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEKAL----GEEKAKEILDRLEQ 100 (108)
T ss_dssp HHHHHHHHHT------HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHHHS-------HHHHH------
T ss_pred HHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHHHC----CHHHHHHHHHHHhc
Confidence 45566666554 5678888888888888744432221 233444444433 33455666655543
No 57
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=24.89 E-value=2.7e+02 Score=20.08 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=30.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQ 38 (196)
Q Consensus 1 ~~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~k 38 (196)
|+++|..+|.+-.+-+........+.......++..+.
T Consensus 1 ~~e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~ 38 (103)
T PRK08404 1 MEDVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAK 38 (103)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999888888888888888877777765554
No 58
>PF08165 FerA: FerA (NUC095) domain; InterPro: IPR012560 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain A in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=24.85 E-value=2.2e+02 Score=18.97 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=21.8
Q ss_pred CchhhHHHHHHHHHHHhcchHhhcCCC
Q psy15948 141 VPQNDVDSLMKQVADEAGLELTMALPS 167 (196)
Q Consensus 141 ~~eeevd~lv~qv~~E~~~~~~~~l~~ 167 (196)
.++.++.++.-++++++=-|.+..||.
T Consensus 7 ~~~~~l~~~~~~lLdqlIeD~~~pLP~ 33 (66)
T PF08165_consen 7 DSEEELAELWLKLLDQLIEDCSKPLPS 33 (66)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 577889999999999998887766653
No 59
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.70 E-value=1.3e+02 Score=18.34 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q psy15948 32 KTKKAIQKGNLEVARIHAENAIR 54 (196)
Q Consensus 32 ~iKka~kkg~~~~aki~Ak~lvr 54 (196)
-++..+.-|+.++||-..++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 46788999999999999999985
No 60
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=23.46 E-value=3.3e+02 Score=22.73 Aligned_cols=47 Identities=11% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHh
Q psy15948 100 MKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELT 162 (196)
Q Consensus 100 n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~ 162 (196)
......+++...+.+..+++.+... ..++++..+|++++.++++.++
T Consensus 147 ~~~~~~~k~~~~i~~iK~~va~~~~----------------~t~~eI~~IV~~~~~~~~i~ls 193 (225)
T PF06207_consen 147 GDGIGDEKANAAIAEIKEEVAKQKP----------------KTDEEIRNIVNNVLNNYNINLS 193 (225)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCC----------------CCHHHHHHHHHHHHHHcCCCCC
Confidence 4556666666666665555443211 2568999999999999998753
No 61
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.13 E-value=3e+02 Score=19.96 Aligned_cols=32 Identities=0% Similarity=0.027 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 4 HLFNLKFAAKELERNSKRCEKEEKAEKLKTKK 35 (196)
Q Consensus 4 ~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKk 35 (196)
...+++.+..++..+..+++.+...+..+|..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888889999999999999998884
No 62
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.34 E-value=1.8e+02 Score=21.62 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q psy15948 8 LKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNL 42 (196)
Q Consensus 8 Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~ 42 (196)
+...++.|+++...+++.-......++.++..|..
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455556666666666666666666666666543
Done!