Query psy15948
Match_columns 196
No_of_seqs 109 out of 653
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 17:10:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 6.1E-48 2.1E-52 316.8 12.1 188 4-194 15-218 (218)
2 2gd5_A Charged multivesicular 100.0 2.3E-41 7.9E-46 271.1 4.9 166 2-170 13-178 (179)
3 3eab_G CHMP1B; spastin, MIT, E 99.0 2E-11 6.9E-16 77.5 -0.7 49 145-194 1-50 (50)
4 4abm_A Charged multivesicular 97.9 0.00026 8.8E-09 48.7 11.4 72 2-78 5-77 (79)
5 3um3_B Charged multivesicular 97.7 0.00023 7.8E-09 51.5 8.8 67 102-170 2-76 (104)
6 3frt_A Charged multivesicular 97.7 1.7E-05 5.9E-10 64.6 3.2 146 7-158 11-165 (218)
7 2gd5_A Charged multivesicular 97.1 0.00017 5.9E-09 56.8 2.1 149 7-158 11-165 (179)
8 3frr_A Uncharacterized protein 96.8 0.069 2.3E-06 42.4 15.1 151 6-161 15-179 (191)
9 3ggy_A Increased sodium tolera 96.4 0.21 7.1E-06 39.7 15.2 154 5-162 13-185 (193)
10 2v6x_B DOA4-independent degrad 96.1 0.0027 9.1E-08 40.4 2.0 15 181-195 39-53 (54)
11 2luh_B Vacuolar protein-sortin 92.1 0.1 3.6E-06 33.5 2.7 54 103-156 1-54 (59)
12 2xze_Q Charged multivesicular 91.4 0.09 3.1E-06 31.2 1.7 12 183-194 29-40 (40)
13 3ggz_E Vacuolar protein-sortin 91.0 0.19 6.6E-06 27.5 2.7 18 177-194 12-29 (29)
14 3htu_B Vacuolar protein-sortin 85.7 1 3.5E-05 26.4 3.6 29 2-30 8-36 (39)
15 2hh7_A Hypothetical protein CS 74.7 18 0.00061 26.3 7.9 47 55-101 9-55 (119)
16 3twe_A Alpha4H; unknown functi 69.0 2.9 9.8E-05 21.8 1.8 14 181-194 9-22 (27)
17 3aai_A Copper homeostasis oper 64.8 30 0.001 23.8 7.0 47 55-101 13-60 (94)
18 2w6b_A RHO guanine nucleotide 52.6 39 0.0013 21.0 5.4 36 3-38 10-52 (56)
19 1wle_A Seryl-tRNA synthetase; 51.2 1.3E+02 0.0046 26.7 11.4 38 3-40 70-107 (501)
20 2dq0_A Seryl-tRNA synthetase; 51.2 1.1E+02 0.0037 26.9 10.0 39 3-41 31-69 (455)
21 4adz_A CSOR; transcription, co 50.3 26 0.0009 25.9 4.9 48 54-101 50-97 (136)
22 1z0k_B FYVE-finger-containing 47.9 55 0.0019 21.3 6.8 42 22-63 25-66 (69)
23 2lxm_B Charged multivesicular 47.9 13 0.00043 23.5 2.4 31 129-159 7-38 (57)
24 1yzm_A FYVE-finger-containing 47.3 47 0.0016 20.4 6.8 42 22-63 7-48 (51)
25 3qne_A Seryl-tRNA synthetase, 36.9 2.3E+02 0.0077 25.2 10.5 39 3-41 33-71 (485)
26 3v1a_A Computational design, M 32.9 82 0.0028 19.0 6.3 40 22-61 6-45 (48)
27 2r6a_C DNAG primase, helicase 32.3 1.2E+02 0.004 21.1 6.1 38 22-59 103-140 (143)
28 1z0j_B FYVE-finger-containing 30.1 1.1E+02 0.0036 19.4 6.8 41 22-62 14-54 (59)
29 1ses_A Seryl-tRNA synthetase; 28.6 2.8E+02 0.0097 23.8 8.9 33 3-35 28-60 (421)
30 1naf_A ADP-ribosylation factor 22.6 2.4E+02 0.0084 21.0 6.9 94 58-159 36-140 (158)
31 2nsa_A Trigger factor, TF; cha 21.9 2.3E+02 0.0079 20.5 7.6 38 123-160 91-128 (170)
32 2dq3_A Seryl-tRNA synthetase; 21.9 1.1E+02 0.0038 26.5 5.0 38 3-40 30-67 (425)
33 2wuj_A Septum site-determining 21.1 60 0.0021 20.0 2.3 17 142-158 21-37 (57)
34 2d8d_A Aroag, phospho-2-dehydr 20.4 1.9E+02 0.0065 18.9 5.0 34 1-34 1-34 (90)
35 1a92_A Delta antigen; leucine 20.1 1.6E+02 0.0053 17.8 4.6 25 7-31 11-35 (50)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-48 Score=316.78 Aligned_cols=188 Identities=17% Similarity=0.281 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 4 HLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTR 83 (196)
Q Consensus 4 ~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~ 83 (196)
.-..||++.|+|+|++++|++++++++.+||+++++||+++|||||+++||+|+++.+||.++++|++|+++|++++++.
T Consensus 15 ~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~ 94 (218)
T 3frt_A 15 WSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHhh
Q psy15948 84 KVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTM 163 (196)
Q Consensus 84 ~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~~ 163 (196)
+|+++|++++++|+.+|+.||+|+|+++|++|++||+++||+++||+|+|++.++.+++|+|+|++|++|++|+|.+
T Consensus 95 ~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~--- 171 (218)
T 3frt_A 95 RVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAG--- 171 (218)
T ss_dssp ----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHh---
Confidence 99999999999999999999999999999999999999999999999999999887789999999999999999964
Q ss_pred cCCCCCC----Cccccc-----cc-------cchHHHHHHHHHHhhc
Q psy15948 164 ALPSGPD----SIAASS-----QV-------SQEQDELSQRLARLRQ 194 (196)
Q Consensus 164 ~l~~~p~----~~~~~~-----~~-------~~~~~~l~~RL~~Lr~ 194 (196)
.|+.+|+ ++|++. +. +++.++|+.||++||+
T Consensus 172 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s 218 (218)
T 3frt_A 172 ALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS 218 (218)
T ss_dssp -----------------------------------------------
T ss_pred HhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence 4555543 233321 11 1234679999999985
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=2.3e-41 Score=271.09 Aligned_cols=166 Identities=16% Similarity=0.254 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALT 81 (196)
Q Consensus 2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~ 81 (196)
.++++.||+++|+|+|++.+|++++++++.+||+++++|+.++||+||+++||+|++..+|+.++++|++|+++++++.+
T Consensus 13 r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~ 92 (179)
T 2gd5_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA 92 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchH
Q psy15948 82 TRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLEL 161 (196)
Q Consensus 82 ~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~ 161 (196)
+.+++++|++++++|+.+|+.||+|+|+++|++|+++++++|+++|||+|+|+++++.+++++++|++|++|++|+|+
T Consensus 93 ~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~~-- 170 (179)
T 2gd5_A 93 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA-- 170 (179)
T ss_dssp HHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhhH--
Confidence 999999999999999999999999999999999999999999999999999999988788999999999999999996
Q ss_pred hhcCCCCCC
Q psy15948 162 TMALPSGPD 170 (196)
Q Consensus 162 ~~~l~~~p~ 170 (196)
++|+.+|+
T Consensus 171 -~~l~~~P~ 178 (179)
T 2gd5_A 171 -GALGKAPS 178 (179)
T ss_dssp ---------
T ss_pred -hhcccCCC
Confidence 46777774
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=99.02 E-value=2e-11 Score=77.53 Aligned_cols=49 Identities=61% Similarity=0.892 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhcchHhhcCCCCCC-CccccccccchHHHHHHHHHHhhc
Q psy15948 145 DVDSLMKQVADEAGLELTMALPSGPD-SIAASSQVSQEQDELSQRLARLRQ 194 (196)
Q Consensus 145 evd~lv~qv~~E~~~~~~~~l~~~p~-~~~~~~~~~~~~~~l~~RL~~Lr~ 194 (196)
+||++|+||+||+|++++.+|+.+|. +++++. ...++|+|.+||++||+
T Consensus 1 qVd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~~-~~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 1 QVDMLLQEMADEAGLDLNMELPQGQTGSVGTSV-ASAEQDELSQRLARLRD 50 (50)
T ss_dssp CCCHHHHHHHHHTTCC---------CHHHHHHH-HHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHhCchHHhhcccccccccCCCC-CcccHHHHHHHHHHHhC
Confidence 47899999999999999999998887 333332 34579999999999995
No 4
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.91 E-value=0.00026 Score=48.74 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy15948 2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQK-NQSINYLRMSARVDAVASRVQT 78 (196)
Q Consensus 2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~r-k~~~~l~~~~aqL~~v~~~l~~ 78 (196)
.++|+.||.+...|++...+|++.-..+...+|+++ .+|. --|..++|.+ -+...+.++.+++..+..++.+
T Consensus 5 ~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK----~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNK----RAALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999 5663 3566666655 5555668888898888877654
No 5
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=97.70 E-value=0.00023 Score=51.48 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=46.3
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHh----cchHh----hcCCCCCC
Q psy15948 102 SMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEA----GLELT----MALPSGPD 170 (196)
Q Consensus 102 ~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~----~~~~~----~~l~~~p~ 170 (196)
.|++++|..+|+++..+++..+-++++|+..+.. ....+|++++.+++.+.+|. .+++. -.||.+|+
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~--~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~ 76 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGF--GEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPS 76 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Confidence 5899999999999999999876666665554322 23457788888888777764 12221 24777776
No 6
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=97.70 E-value=1.7e-05 Score=64.63 Aligned_cols=146 Identities=9% Similarity=0.166 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 7 NLKFAAKELERNSKRCEKEEKAEKLKT---KKAIQKGNLEVARIHAENAIR-QKNQSINYLRMSARVDAVASRVQTALTT 82 (196)
Q Consensus 7 ~Lr~~~r~l~Re~~kle~ee~k~~~~i---Kka~kkg~~~~aki~Ak~lvr-~rk~~~~l~~~~aqL~~v~~~l~~a~~~ 82 (196)
.+|...|.|.+..+.|+|+..++...= +..+|+ +|+--=.+.+| .=++..+.-+...+|-.+.++|++....
T Consensus 11 ~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKk----aakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~r 86 (218)
T 3frt_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKD----AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMG 86 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888777665443 333332 22222223333 3344555666677777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHhhh---hhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHh
Q psy15948 83 RKVTQSMSGVVKAMDAAMKSMNLEKISGLM--DKFEEQFEDL---DVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEA 157 (196)
Q Consensus 83 ~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m--~~f~k~~~~~---~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~ 157 (196)
.+.+.++.+++..|+.+...|.- +.+.| .++.+-|..+ -+.-+++.+.|++++++..+.++.++.++.+.+.+
T Consensus 87 lqt~~s~~~v~~sM~~st~~M~~--~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kV 164 (218)
T 3frt_A 87 MKNQLAVLRVAGSLQKSTEVMKA--MQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (218)
T ss_dssp HHHHHHCC----CCCCCHHHHHH--HHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHH
Confidence 88888888888888776666544 33333 4444444443 33334455677776665444455566666666655
Q ss_pred c
Q psy15948 158 G 158 (196)
Q Consensus 158 ~ 158 (196)
.
T Consensus 165 l 165 (218)
T 3frt_A 165 L 165 (218)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.10 E-value=0.00017 Score=56.80 Aligned_cols=149 Identities=9% Similarity=0.138 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 7 NLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIR-QKNQSINYLRMSARVDAVASRVQTALTTRKV 85 (196)
Q Consensus 7 ~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr-~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~ 85 (196)
.||...+.|.+.++.|+++..++...-|+.-..= ..+++---.+.+| .=++..+.-+...+|....++|++.....+.
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999988886665441110 1222222223333 2344555566677888999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHhhh---hhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhc
Q psy15948 86 TQSMSGVVKAMDAAMKSMNLEKISGLM--DKFEEQFEDL---DVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAG 158 (196)
Q Consensus 86 ~~~m~~~~~~m~~~n~~m~l~~i~~~m--~~f~k~~~~~---~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~ 158 (196)
+.++..++.+|+.+.+.|.. +.+.| .++.+-|..+ -..-++++++|+++++...++++.++.++.+++.+.
T Consensus 90 ~~~~~~v~~am~~~~~~M~~--~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl 165 (179)
T 2gd5_A 90 QLAVLRVAGSLQKSTEVMKA--MQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRIL 165 (179)
T ss_dssp HHHHHHHTSSCCCCSHHHHT--TTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHH
Confidence 88888888888766555432 33333 3444444443 333344478888888765555666677777766553
No 8
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=96.83 E-value=0.069 Score=42.42 Aligned_cols=151 Identities=15% Similarity=0.203 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 6 FNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKV 85 (196)
Q Consensus 6 ~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~ 85 (196)
-.||..+-.|.=-.+|-....+..+.+|-..++.|+.+.|++-+.++||-.+...=|.-+---.+-+..++.....+...
T Consensus 15 ~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~~~k~c 94 (191)
T 3frr_A 15 VNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKEL 94 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 46778888888788888888899999999999999999999999999999999988877776777777776655554444
Q ss_pred HHHHHHHHHHH-HHHHHh-CCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccC------------CCCchhhHHHHHH
Q psy15948 86 TQSMSGVVKAM-DAAMKS-MNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVT------------TSVPQNDVDSLMK 151 (196)
Q Consensus 86 ~~~m~~~~~~m-~~~n~~-m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~------------~~~~eeevd~lv~ 151 (196)
-..+..+...+ -..... -++|++..+-.-|..-+-+ ++...++++..+ ..-+++-++..+.
T Consensus 95 p~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGk-----eF~~~a~e~~~~~Vn~~iv~kLs~~~P~~~lv~~yL~ 169 (191)
T 3frr_A 95 DSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSK-----EYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLI 169 (191)
T ss_dssp CGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCH-----HHHHHHHTTTTSCSCHHHHHHTCCSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCH-----HHHHHHHHcCCCCcCHHHHHHcCCCCcCHHHHHHHHH
Confidence 44455544444 445554 7999997777666655443 344334433211 1234577788888
Q ss_pred HHHHHhcchH
Q psy15948 152 QVADEAGLEL 161 (196)
Q Consensus 152 qv~~E~~~~~ 161 (196)
.|+.++|+++
T Consensus 170 EIA~~y~V~w 179 (191)
T 3frr_A 170 EIAKNYNVPY 179 (191)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHcCCCC
Confidence 8888888864
No 9
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=96.41 E-value=0.21 Score=39.70 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy15948 5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALT--- 81 (196)
Q Consensus 5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~--- 81 (196)
...||..+-.|.=-.+|-+...+..+.+|-+.++.|+.+.||+-+.++||-.+...-|.-+---.+-+..++.....
T Consensus 13 K~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~~~~~ 92 (193)
T 3ggy_A 13 KTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVINDIST 92 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35678888888888888888889999999999999999999999999999999988887766666666666554444
Q ss_pred -----HHHHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHhh----------hhhHHHHHHhhhccccCCCCchhh
Q psy15948 82 -----TRKVTQSMSGVVKAM-DAAMKSMNLEKISGLMDKFEEQFED----------LDVQSSYMENTMSQSVTTSVPQND 145 (196)
Q Consensus 82 -----~~~~~~~m~~~~~~m-~~~n~~m~l~~i~~~m~~f~k~~~~----------~~~~~e~m~d~m~~~~~~~~~eee 145 (196)
....-..+..+...+ -......++|++..+-.-|..-+-+ -||...++.- ++. ..-+++-
T Consensus 93 e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~---~~P~~el 168 (193)
T 3ggy_A 93 EEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSP---SVPKEEL 168 (193)
T ss_dssp HHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSC---CCCCHHH
T ss_pred cccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCC---CCcCHHH
Confidence 222333355544444 4444447888887666555544332 1222222111 111 1135677
Q ss_pred HHHHHHHHHHHhcchHh
Q psy15948 146 VDSLMKQVADEAGLELT 162 (196)
Q Consensus 146 vd~lv~qv~~E~~~~~~ 162 (196)
++..+..|+.++|++++
T Consensus 169 v~~yL~EIA~ey~V~w~ 185 (193)
T 3ggy_A 169 VDLYLKEIAKTYDVPYS 185 (193)
T ss_dssp HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 88999999999998765
No 10
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0027 Score=40.45 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHhhcC
Q psy15948 181 EQDELSQRLARLRQA 195 (196)
Q Consensus 181 ~~~~l~~RL~~Lr~~ 195 (196)
.+||||+||++||+.
T Consensus 39 ~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 39 PDDDLQARLNTLKKQ 53 (54)
T ss_dssp CCHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHhccC
Confidence 689999999999974
No 11
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.1 Score=33.48 Aligned_cols=54 Identities=15% Similarity=0.300 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHH
Q psy15948 103 MNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADE 156 (196)
Q Consensus 103 m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E 156 (196)
+|+.+|....+++...++..+-+++.++-+...+...+.+|++.+.+++.+-+|
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de 54 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE 54 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence 577888888888888888877777777766666543456888999999888776
No 12
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=91.39 E-value=0.09 Score=31.18 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhc
Q psy15948 183 DELSQRLARLRQ 194 (196)
Q Consensus 183 ~~l~~RL~~Lr~ 194 (196)
.+|+.||++||+
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 559999999996
No 13
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=91.03 E-value=0.19 Score=27.51 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.0
Q ss_pred cccchHHHHHHHHHHhhc
Q psy15948 177 QVSQEQDELSQRLARLRQ 194 (196)
Q Consensus 177 ~~~~~~~~l~~RL~~Lr~ 194 (196)
..++.+|.|-.||.+||.
T Consensus 12 ~~eekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 12 VDDEKEDKLAQRLRALRG 29 (29)
T ss_pred ccchhhHHHHHHHHHHcC
Confidence 345789999999999994
No 14
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=85.74 E-value=1 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 2 ENHLFNLKFAAKELERNSKRCEKEEKAEK 30 (196)
Q Consensus 2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~ 30 (196)
|++|++|+.+.+.|.+..++++..-.++.
T Consensus 8 DrAIL~LK~QRDkL~qyqkri~~~~~rE~ 36 (39)
T 3htu_B 8 DKAILQLKQQRDKLRQYQKRIAQQLERER 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 78999999999999999999988776654
No 15
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=74.73 E-value=18 Score=26.25 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 55 QKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMK 101 (196)
Q Consensus 55 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~ 101 (196)
+++...||-+...|+.+|..-|+.-.....+...+..+..++++++.
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~ 55 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANR 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999998999999888888888877643
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=69.03 E-value=2.9 Score=21.77 Aligned_cols=14 Identities=43% Similarity=0.816 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhhc
Q psy15948 181 EQDELSQRLARLRQ 194 (196)
Q Consensus 181 ~~~~l~~RL~~Lr~ 194 (196)
+.+||+.||..||.
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56899999999985
No 17
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=64.78 E-value=30 Score=23.81 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy15948 55 QKNQSINYLRMSARVDAVASRVQTAL-TTRKVTQSMSGVVKAMDAAMK 101 (196)
Q Consensus 55 ~rk~~~~l~~~~aqL~~v~~~l~~a~-~~~~~~~~m~~~~~~m~~~n~ 101 (196)
+++..+|+-+...|+.+|..-++.-. ....+...+..+..++.+++.
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~ 60 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGE 60 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999998888 888888888888888877654
No 18
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=52.65 E-value=39 Score=21.01 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCE-------KEEKAEKLKTKKAIQ 38 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle-------~ee~k~~~~iKka~k 38 (196)
|++..||-++.+|.++-+++. +..+.++.-+++.++
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666655555543 334445555555554
No 19
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=51.19 E-value=1.3e+02 Score=26.73 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKG 40 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg 40 (196)
+.++.|-...|.+..+...|+.+.+.+-++|.+..++|
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~ 107 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQ 107 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56788888999999999999999999999998876655
No 20
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=51.17 E-value=1.1e+02 Score=26.92 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGN 41 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~ 41 (196)
+.|+.|-...|.+..+...|..+.+.+-++|.+..++|.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~ 69 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE 69 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 567889999999999999999999999999998766664
No 21
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=50.29 E-value=26 Score=25.94 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 54 RQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMK 101 (196)
Q Consensus 54 r~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~ 101 (196)
.+++...||-+...|+.+|..-|+.-.....+...+..+..++.+++.
T Consensus 50 ~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~ 97 (136)
T 4adz_A 50 QKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFAL 97 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 377888999999999999999999888888998888888888877654
No 22
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=47.91 E-value=55 Score=21.34 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 22 CEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYL 63 (196)
Q Consensus 22 le~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~ 63 (196)
|..+...++..|+.|-+.|+.+.+.++..|+--.+.++.++.
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 445667788899999999999999999999888887776653
No 23
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=47.86 E-value=13 Score=23.54 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=17.4
Q ss_pred HHhhhccccCC-CCchhhHHHHHHHHHHHhcc
Q psy15948 129 MENTMSQSVTT-SVPQNDVDSLMKQVADEAGL 159 (196)
Q Consensus 129 m~d~m~~~~~~-~~~eeevd~lv~qv~~E~~~ 159 (196)
|.+++++..+. +.+|++.+.++..+.+|...
T Consensus 7 Iqealsr~~g~~diDEdEL~aELe~LeqE~~~ 38 (57)
T 2lxm_B 7 INEALSRSYGTPELDEDDLEAELDALGDELLA 38 (57)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 66677765443 46889999999999988753
No 24
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=47.29 E-value=47 Score=20.36 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 22 CEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYL 63 (196)
Q Consensus 22 le~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~ 63 (196)
|..+...++.-|+.|-+.|..+.+.++..|+--.+.++.++.
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 345666788899999999999999999999888887776654
No 25
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=36.92 E-value=2.3e+02 Score=25.23 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGN 41 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~ 41 (196)
+.|+.|-...|.+..+...|..+.+.+-++|.+..+.|.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~ 71 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE 71 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 567788888899999999999999999999988766664
No 26
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=32.93 E-value=82 Score=19.00 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q psy15948 22 CEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSIN 61 (196)
Q Consensus 22 le~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~ 61 (196)
|.-+..-++.-|+.|-+.|..+.+.++-+|+=-...++.+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 3455667788899999999999999999998877776654
No 27
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=32.28 E-value=1.2e+02 Score=21.07 Aligned_cols=38 Identities=16% Similarity=0.022 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q psy15948 22 CEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQS 59 (196)
Q Consensus 22 le~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~ 59 (196)
+.+.-.+...+|..+...|+.+.+.-++.++++.+++.
T Consensus 103 ~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 103 KWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 45666667788888888999999888888888876653
No 28
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=30.14 E-value=1.1e+02 Score=19.36 Aligned_cols=41 Identities=20% Similarity=0.064 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Q psy15948 22 CEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINY 62 (196)
Q Consensus 22 le~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l 62 (196)
|..+...++..|+.|-+.|..+.+-++..|+--...+..++
T Consensus 14 L~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 14 LLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999999999999999977766665544
No 29
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.64 E-value=2.8e+02 Score=23.84 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKK 35 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKk 35 (196)
+.++.|-...|.+..+...|+.+.+..-++|.+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788888888888888888888777766
No 30
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=22.64 E-value=2.4e+02 Score=21.05 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHhhhhhHHHHHHhh
Q psy15948 58 QSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKIS-----GLMDKFEEQFEDLDVQSSYMENT 132 (196)
Q Consensus 58 ~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~-----~~m~~f~k~~~~~~~~~e~m~d~ 132 (196)
+.++|.+.-+.=+ ..+.+.......-...+.+.+.+|..|...+++..-. .++.++-.....+. -.+-..
T Consensus 36 ~AN~LiK~m~~~d--~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~q---p~i~~L 110 (158)
T 1naf_A 36 AANKLIKEMVQED--QKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMR---PTLFRL 110 (158)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHH---HHHHHH
T ss_pred HHHHHHHHHhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHH---HHHHHH
Confidence 4555554444333 2223333333334445667788888888888775432 56667666666532 233444
Q ss_pred hccccCCCCchh------hHHHHHHHHHHHhcc
Q psy15948 133 MSQSVTTSVPQN------DVDSLMKQVADEAGL 159 (196)
Q Consensus 133 m~~~~~~~~~ee------evd~lv~qv~~E~~~ 159 (196)
++... ++|+ .+.+.+++|+..|..
T Consensus 111 i~e~~---ddee~L~elL~~ND~Ln~vl~kY~~ 140 (158)
T 1naf_A 111 ASDTE---DNDEALAEILQANDNLTQVINLYKQ 140 (158)
T ss_dssp HHHCC---SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcc---CCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43321 2332 345667888887754
No 31
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=21.91 E-value=2.3e+02 Score=20.52 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=30.8
Q ss_pred hhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcch
Q psy15948 123 DVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLE 160 (196)
Q Consensus 123 ~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~ 160 (196)
.+....+-+.+....+....+++++..+..++..+|.+
T Consensus 91 ~vk~~lil~~ia~~e~I~vsdeev~~~i~~~A~~y~~~ 128 (170)
T 2nsa_A 91 DIKRDRVIEVLAQEKGISVNDEELEKEAEELAPFWGIS 128 (170)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45667777777777777888999999999999998853
No 32
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=21.89 E-value=1.1e+02 Score=26.45 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKG 40 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg 40 (196)
+.++.|-...|.+..+...|+.+.+..-++|.+..++|
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~ 67 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG 67 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56788888999999999999999999999988765555
No 33
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.06 E-value=60 Score=20.01 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHHHHhc
Q psy15948 142 PQNDVDSLMKQVADEAG 158 (196)
Q Consensus 142 ~eeevd~lv~qv~~E~~ 158 (196)
+.+|||+.+++|.+++.
T Consensus 21 ~~~EVD~FLd~v~~~~~ 37 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYE 37 (57)
T ss_dssp EHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 67899999999999886
No 34
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=20.41 E-value=1.9e+02 Score=18.94 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=25.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTK 34 (196)
Q Consensus 1 ~~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iK 34 (196)
|.+.+-.||..+..+|+++-.|=.+.-.+..+|-
T Consensus 1 m~~~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~ 34 (90)
T 2d8d_A 1 MDERIQALRKEVDRVNREILRLLSERGRLVQEIG 34 (90)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999998877766665543
No 35
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.13 E-value=1.6e+02 Score=17.81 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 7 NLKFAAKELERNSKRCEKEEKAEKL 31 (196)
Q Consensus 7 ~Lr~~~r~l~Re~~kle~ee~k~~~ 31 (196)
+-|...++|+|..++..+.-++++.
T Consensus 11 ~~Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4577777777777777766666654
Done!