Query psy15948
Match_columns 196
No_of_seqs 109 out of 653
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 17:10:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15948.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15948hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d256ba_ a.24.3.1 (A:) Cytochro 68.8 4.1 0.0003 27.1 5.0 38 26-63 68-105 (106)
2 d1t72a_ a.7.12.1 (A:) Phosphat 44.5 47 0.0034 23.4 13.7 138 10-158 11-171 (215)
3 d256ba_ a.24.3.1 (A:) Cytochro 31.4 59 0.0043 20.9 5.9 37 85-121 3-39 (106)
4 d1u9pa1 a.43.1.1 (A:72-107) Ar 25.5 16 0.0012 18.9 1.5 19 145-163 2-20 (36)
5 d1ecma_ a.130.1.1 (A:) Chorism 24.4 68 0.0049 19.6 5.0 34 3-36 1-34 (91)
6 d2jdig1 c.49.2.1 (G:1-272) ATP 24.1 30 0.0022 25.6 3.7 27 68-94 2-28 (272)
7 d1sumb_ a.7.12.1 (B:) PhoU hom 23.0 1.2E+02 0.0086 21.3 12.5 83 9-95 5-95 (225)
8 d1dkza1 a.8.4.1 (A:507-603) Dn 16.6 1.2E+02 0.0085 18.7 9.0 70 48-122 22-92 (97)
9 d1cuna2 a.7.1.1 (A:116-219) Sp 14.3 1.3E+02 0.0093 18.0 10.7 44 4-47 31-74 (104)
10 d1o3xa_ a.7.8.1 (A:) ADP-ribos 14.1 1.5E+02 0.011 18.9 5.2 33 89-121 30-67 (112)
No 1
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=68.76 E-value=4.1 Score=27.09 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 26 EKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYL 63 (196)
Q Consensus 26 e~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~ 63 (196)
-......|...+..|+.+.|+..+..+-.+|+.+.+.|
T Consensus 68 L~~~ld~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~ 105 (106)
T d256ba_ 68 LVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY 105 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 34455788899999999999999999999999887765
No 2
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=44.51 E-value=47 Score=23.37 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-HHHHHHHHHHH
Q psy15948 10 FAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQ-------SINYLRMSARVD-AVASRVQTALT 81 (196)
Q Consensus 10 ~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~-------~~~l~~~~aqL~-~v~~~l~~a~~ 81 (196)
....++.++..++-..-......+..++..+|.+. |+.++..-.. +.++...-..+. -++..+....+
T Consensus 11 ~~L~~l~~~l~~M~~~v~~~l~~~~~al~~~D~~~----a~~v~~~d~~id~l~~~I~~~~~~~l~~~~p~a~dlr~~~~ 86 (215)
T d1t72a_ 11 KELEETKEQVIKMAKLVQEAIDKATEALNKQNVEL----AEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMG 86 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Confidence 44556666666666667777778888999999654 4444433333 333321111111 22233455555
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCC--------chhhH
Q psy15948 82 TRKVTQSMSGVVKA-------MDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSV--------PQNDV 146 (196)
Q Consensus 82 ~~~~~~~m~~~~~~-------m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~--------~eeev 146 (196)
...++..+...+.- +.........+.. ..+..+ .....+|+.++++.....+. .++++
T Consensus 87 ~~~i~~~lERIgD~a~~ia~~~~~~~~~~~~~~~-~~l~~m------~~~v~~m~~~a~~a~~~~d~~~a~~v~~~d~~i 159 (215)
T d1t72a_ 87 IYKIVSDLERMGDEAENIAERAILLAEEPPLKPY-VNINFM------SEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTV 159 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCC-HHHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchh-HHHHHH------HHHHHHHHHHHHHHHHccCHHHHHHHHHHhhhH
Confidence 55555554444433 3333332221111 111222 22455777777776543321 13556
Q ss_pred HHHHHHHHHHhc
Q psy15948 147 DSLMKQVADEAG 158 (196)
Q Consensus 147 d~lv~qv~~E~~ 158 (196)
|.+..++..++-
T Consensus 160 d~~~~~~~~~~~ 171 (215)
T d1t72a_ 160 DELYHQLERELM 171 (215)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 3
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=31.37 E-value=59 Score=20.90 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q psy15948 85 VTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFED 121 (196)
Q Consensus 85 ~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~ 121 (196)
+-..|+.....++.+.+.-+.++|...|++|...+..
T Consensus 3 l~~~M~~m~~a~k~~~~A~s~~Ei~~~m~~lr~a~~d 39 (106)
T d256ba_ 3 LEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALD 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 4557888888888888999999999999999866553
No 4
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=25.51 E-value=16 Score=18.89 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhcchHhh
Q psy15948 145 DVDSLMKQVADEAGLELTM 163 (196)
Q Consensus 145 evd~lv~qv~~E~~~~~~~ 163 (196)
|+=+++.+|+.|+|-.++.
T Consensus 2 evldlvrkvaeeng~s~ns 20 (36)
T d1u9pa1 2 EVLDLVRKVAEENGRSVNS 20 (36)
T ss_dssp HHHHHHHHHHHHHTCCHHH
T ss_pred cHHHHHHHHHHHcCcchhH
Confidence 5667899999999976553
No 5
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=24.36 E-value=68 Score=19.58 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKA 36 (196)
Q Consensus 3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka 36 (196)
|.+-.||..+..+|+++-.|=.+.-.+..+|-..
T Consensus 1 n~L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~ 34 (91)
T d1ecma_ 1 NPLLALREKISALDEKLLALLAERRELAVEVGKA 34 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999988888877776544
No 6
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.10 E-value=30 Score=25.62 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948 68 RVDAVASRVQTALTTRKVTQSMSGVVK 94 (196)
Q Consensus 68 qL~~v~~~l~~a~~~~~~~~~m~~~~~ 94 (196)
.|..+..+|.+..++.+++++|+-++.
T Consensus 2 ~Lkeik~RI~Sv~~t~kITkAMkmVAa 28 (272)
T d2jdig1 2 TLKDITRRLKSIKNIQKITKSMKMVAA 28 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888889999998888764
No 7
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=23.02 E-value=1.2e+02 Score=21.31 Aligned_cols=83 Identities=7% Similarity=0.011 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-H------HHHHHHHHH
Q psy15948 9 KFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMS-ARVD-A------VASRVQTAL 80 (196)
Q Consensus 9 r~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~-aqL~-~------v~~~l~~a~ 80 (196)
.....++.++..++-.--......+..++..+|.+ +|+.++..-..+.++..-- ..+- . ++..+....
T Consensus 5 ~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~----~a~~V~~~d~~Id~l~~~I~~~~~~~la~~~p~a~dlR~i~ 80 (225)
T d1sumb_ 5 NEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNES----LAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVT 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 34566777777777777778888888999999954 5666666666666553322 1111 1 123355555
Q ss_pred HHHHHHHHHHHHHHH
Q psy15948 81 TTRKVTQSMSGVVKA 95 (196)
Q Consensus 81 ~~~~~~~~m~~~~~~ 95 (196)
+..+++..+...+.-
T Consensus 81 ~~l~i~~dlERIgD~ 95 (225)
T d1sumb_ 81 AGIRVAELIENIADK 95 (225)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444433
No 8
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=16.55 E-value=1.2e+02 Score=18.68 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q psy15948 48 HAENAIRQKNQSINY-LRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDL 122 (196)
Q Consensus 48 ~Ak~lvr~rk~~~~l-~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~ 122 (196)
..+.+|-.|+...+| |.+...|......|..- .-..+......++.....-|...|...+..|.+.+..+
T Consensus 22 ~~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~-----~k~~i~~~i~~l~~~l~~~d~~~i~~~~~~L~~~~~~l 92 (97)
T d1dkza1 22 KFEELVQTRNQGDHLLHSTRKQVEEAGDKLPAD-----DKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHH-----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 345666677777777 66777776554444222 22334455555566666778888888888888766653
No 9
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.27 E-value=1.3e+02 Score=18.01 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy15948 4 HLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARI 47 (196)
Q Consensus 4 ~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki 47 (196)
.+-.+....+.+.+++..-+..-..+....+..+..|+.+...|
T Consensus 31 ~v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I 74 (104)
T d1cuna2 31 AIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENI 74 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccHHHH
Confidence 45567778888899998888888888999999899988665544
No 10
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.14 E-value=1.5e+02 Score=18.89 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHhh
Q psy15948 89 MSGVVKAMDAAMKSMNLE-----KISGLMDKFEEQFED 121 (196)
Q Consensus 89 m~~~~~~m~~~n~~m~l~-----~i~~~m~~f~k~~~~ 121 (196)
+++.++.|..|....+++ .-..++.+|-.....
T Consensus 30 v~~n~~lL~eML~~~~~~~~~~~~~~ell~eL~~~c~~ 67 (112)
T d1o3xa_ 30 VNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCER 67 (112)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 344455555555544432 122455555555554
Done!