RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15948
(196 letters)
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein
transport; 2.80A {Homo sapiens} PDB: 3frv_A
Length = 179
Score = 111 bits (278), Expect = 3e-31
Identities = 26/167 (15%), Positives = 64/167 (38%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
+ ++ + ++R + ++EE+ K K A +KG +V + A+ IR +
Sbjct: 12 VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVS 71
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
A +++V ++ L +V S+ + M A + + +I M + ++
Sbjct: 72 KLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMM 131
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPS 167
+ +E+T + + + + ++ E PS
Sbjct: 132 KAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPS 178
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP,
IST1, coiled coil, cytoplasm, lipoprotein, membrane,
myristate, phosphoprotein; 4.00A {Homo sapiens}
Length = 218
Score = 111 bits (279), Expect = 5e-31
Identities = 31/206 (15%), Positives = 72/206 (34%), Gaps = 13/206 (6%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
+ ++ + ++R + ++EE+ K K A +KG +V + A+ IR +
Sbjct: 12 VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVS 71
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
A +++V ++ L +V S+ + M A + + +I M + ++
Sbjct: 72 KLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMM 131
Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
+ +E+T + + + + ++ E PS +
Sbjct: 132 KAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPG 191
Query: 181 EQ-------------DELSQRLARLR 193
+ + RLA LR
Sbjct: 192 AMAASEDEEEEEEALEAMQSRLATLR 217
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding,
cytoplasm, disease mutation, hereditary spastic
paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Length = 50
Score = 64.6 bits (157), Expect = 1e-14
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 145 DVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQDELSQRLARLRQ 194
VD L++++ADEAGL+L M LP G +S S EQDELSQRLARLR
Sbjct: 1 QVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRLARLRD 50
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-05
Identities = 39/282 (13%), Positives = 75/282 (26%), Gaps = 105/282 (37%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
M+ +F L E E L+ N H+ N + +
Sbjct: 180 MDFKIFWLNLK--------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 61 NYLRM------------------SARV-DAVASRVQTALTTR--KVTQSMSGVVK----- 94
LR +A+ +A + LTTR +VT +S
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 95 ---------------------------------------AMDAAM-----------KSMN 104
++ A K +N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 105 LEKISGLMDKFEEQFEDLDVQSSYM------------ENTMS---QSVTTSVPQNDVDSL 149
+K++ +++ E + + + +S V S V+ L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 150 MKQ-VADEAGLELTMALPSGPDSIAASSQVSQEQD-ELSQRL 189
K + ++ E T+++P SI +V E + L + +
Sbjct: 412 HKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHRSI 449
Score = 31.7 bits (71), Expect = 0.13
Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 35/166 (21%)
Query: 5 LF--NLKFAAKELER---NSKRCEKEEKAEKLKTKKAIQKGNLE-VARIHAENAIRQKNQ 58
+F + L + + + KL ++K E I
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---------- 429
Query: 59 SINYLRMSARVDAVAS---RVQTALTTRKVTQSMSGVVKAMDAA--------MKSMNLEK 107
SI YL + +++ + + K S + +D +K++
Sbjct: 430 SI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-- 486
Query: 108 ISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQV 153
M F F D ++E + T + + ++Q+
Sbjct: 487 -PERMTLFRMVFLDFR----FLEQKIRHDSTAWNASGSILNTLQQL 527
Score = 30.6 bits (68), Expect = 0.37
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 23/121 (19%)
Query: 92 VVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMK 151
V + + ++ I D S E + + V + + + LM
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMS 96
Query: 152 QVADEAGLELTMALPSGP--------DSIAASSQ------VSQEQ--DELSQRLARLRQA 195
+ E PS D + +Q VS+ Q +L Q L LR A
Sbjct: 97 PIKTEQ------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 196 E 196
+
Sbjct: 151 K 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.044
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 28/123 (22%)
Query: 75 RVQ-----TALTTRKVTQSMS---GVVKAMDAAMKSMNLEKISGLMDKFEEQF-EDLDVQ 125
R T+L + S+ GV M ++ ++ E++ ++K V+
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 126 SSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQDEL 185
S + N V + PQ SL GL LT+ A S + Q +
Sbjct: 368 IS-LVNGAKNLVVSGPPQ----SL-------YGLNLTLR------KAKAPSGLDQSRIPF 409
Query: 186 SQR 188
S+R
Sbjct: 410 SER 412
Score = 28.1 bits (62), Expect = 2.1
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 90 SGVVKAMDAA---MKSMNLEKI-------SGLMDKFEEQ 118
+G ++A+D + + L+KI S +++ E
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 30.9 bits (70), Expect = 0.27
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 150 MKQVADEAGLELTMALPSGPDSIAA 174
+K G L++ + +S
Sbjct: 180 VKDSLRADGFLLSLTVLPNVNSTWY 204
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 30.0 bits (68), Expect = 0.45
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 147 DSLMKQVADEAGLELTMALPSGPDSIAA 174
DS A LT+A P+GPD I
Sbjct: 200 DSYSAANAGGQHFLLTVASPAGPDKIKV 227
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.46
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 16 ERNSKRCEKEEKAEKLKTKKAIQKGNLEVA---RIHAENAIRQKNQS 59
E KR ++ + A K+ ++ +K ++ + +E + K +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Score = 27.0 bits (59), Expect = 3.1
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 12 AKELERNSKRCEKEEKAEKLKTKKAIQKG----NLEVARIHAENAIRQK 56
K L+ + E+ + K KK +++ + +V + N I K
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 27.0 bits (59), Expect = 3.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 13 KELERNSKRCEKE--EKAEK------LKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
+EL+ SK E+E EKA+K + + ++K N RI + +Q + I
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK-NKINNRIADKAFYQQPDADI 153
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 29.9 bits (68), Expect = 0.50
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 147 DSLMKQVADEAGLELTMALPSGPDSIAA 174
D+ + + LT+A P+GP +
Sbjct: 159 DAYSAKHPNGKKFLLTIASPAGPQNYNK 186
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 30.0 bits (68), Expect = 0.51
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 147 DSLMKQVADEAGLELTMALPSGPDSIAA 174
DS A+ +L++A P+GP
Sbjct: 177 DSYSATYANGYHFQLSIAAPAGPSHYNV 204
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 29.5 bits (66), Expect = 0.79
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 150 MKQVADEAGLELTMALPSGPDSIAAS 175
+ +++A + P I A+
Sbjct: 314 ITDAKISNLKGISIASSADPAKIDAA 339
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 28.9 bits (65), Expect = 0.91
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 149 LMKQVADEAG--LELTMALPSGPDSIAASSQVSQ 180
L+K + + G +T+A+ + +S + V
Sbjct: 179 LLKSLREAVGEQKLVTIAVGANAESPKSWVDVKA 212
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis,
isopropylmalate isomerase, LEUD, amino-acid
biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB:
3h5h_A 3h5e_A
Length = 171
Score = 27.9 bits (63), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 141 VPQNDVDSLMKQVADEAGLELTMALPS 167
V Q+DV+ L K + GLE+T L
Sbjct: 118 VAQDDVELLWKLIEQSPGLEITANLQD 144
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics,
center for structural genomics of infec diseases, csgid,
isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Length = 203
Score = 27.9 bits (63), Expect = 1.8
Identities = 2/27 (7%), Positives = 13/27 (48%)
Query: 141 VPQNDVDSLMKQVADEAGLELTMALPS 167
+ +++V ++ ++ + ++L
Sbjct: 126 LAKDEVLEIVDELKKSQDKNIEISLLE 152
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 27.8 bits (62), Expect = 2.8
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 158 GLELTMALPSGPDSIAASS 176
L+ LP+ P I A
Sbjct: 226 KYVLSAFLPANPADIDAGG 244
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.1 bits (60), Expect = 4.7
Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 18/195 (9%)
Query: 1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
M+ + +L+ +E E ++ + E+ K KK E+ I
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK-------------MEDDILIMEDQN 999
Query: 61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
N +++ + RV T + + + + +SM + ++ + K E+ +
Sbjct: 1000 N--KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM-ISELEVRLKKEEKSRQ 1056
Query: 121 DLDVQSSYMENTMSQSVTT-SVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVS 179
+L+ +E S + Q + L Q+A + EL AL D + +
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE-ELQAALARLEDETSQKNNAL 1115
Query: 180 QEQDELSQRLARLRQ 194
++ EL ++ L++
Sbjct: 1116 KKIRELESHISDLQE 1130
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 26.3 bits (59), Expect = 8.0
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 106 EKISG--LMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELT 162
K G L + ++ DV +++ + + + V+ + Q+ +G L
Sbjct: 51 PKTEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPA----AVEGGLHQIETASGAVLK 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.120 0.301
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,599,332
Number of extensions: 142381
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 46
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (24.8 bits)