RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15948
         (196 letters)



>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 120

 Score = 24.4 bits (53), Expect = 7.4
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 125 QSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASS-QVSQE 181
            ++    T+     ++  + D+   + Q A     +L    PS     A ++  ++Q 
Sbjct: 22  SNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQELSPSSSVVPAFNTGTITQV 79


>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
          parahaemolyticus [TaxId: 670]}
          Length = 264

 Score = 24.6 bits (53), Expect = 7.7
 Identities = 8/47 (17%), Positives = 17/47 (36%)

Query: 34 KKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTAL 80
          K A+ +G L+ A      AI+   +  +       +  +    + A 
Sbjct: 4  KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERAD 50


>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 137

 Score = 24.2 bits (52), Expect = 8.4
 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 60  INYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQF 119
           +   +   +   + + V       ++ + +  V+   D A+K  N E    LM K  E  
Sbjct: 16  VYAEKRKKKTAELVNEVAKIENKDEIFKEIDKVI---DEALKIKNKEDFGKLMTKNHELL 72

Query: 120 EDLDVQSSYMENTMSQS 136
           + L++ +  ++  +   
Sbjct: 73  KKLNISTPKLDRIVDIG 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.120    0.301 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 581,289
Number of extensions: 23330
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 13
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.2 bits)