BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1595
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL-----SNISLVLQKVSRQSAG 124
EGD V ECQ+SA P +L W N++ + N T I L ++L+++ V+++ AG
Sbjct: 29 EGDSVKLECQISAIP-PPKLFWKRNNEMVQFN-TDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 125 EYSCMAINTEG 135
Y+ A+N G
Sbjct: 87 WYTVSAVNEAG 97
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 21 DDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIK--EGDDVYFEC 78
D D+ C A N + ++E L V P++ + P ++K EG C
Sbjct: 71 DSDDGIYCCTANNGV--GGAVESCGALQVKMKPKI------TRPPINVKIIEGLKAVLPC 122
Query: 79 QVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138
NP+ + W D + N ++ S SL + V ++ AG+Y C+A N+ G
Sbjct: 123 TTMGNPKPS-VSWIKGDSALRENSRIAVLESG-SLRIHNVQKEDAGQYRCVAKNSLGTAY 180
Query: 139 SQPIILAVK 147
S+ + L V+
Sbjct: 181 SKLVKLEVE 189
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 30 RAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRL 89
R E + A ++ I+ + VP + S N T + G+++ F C+ S +P +
Sbjct: 73 RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGSPEPA-I 130
Query: 90 LWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143
WF N K I N + SN L ++ + G Y C A N G Q +
Sbjct: 131 SWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 56 VIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEI 98
++ F ++P + K+G+D C+VS++P A + W ++++E+
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSP-APAVSWLYHNEEV 43
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 42 EDTWILNV-HFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHND---KE 97
ED ++ V P V +F ++ D+ EG F+C+V P ++WF +D KE
Sbjct: 26 EDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPE-VMWFKDDNPVKE 84
Query: 98 IHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
H N SL + +V +Y+C A+N+ G +L
Sbjct: 85 SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 30 RAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRL 89
R E + A ++ I+ + VP + S N T + G+++ F C+ S +P +
Sbjct: 169 RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGSPEPA-I 226
Query: 90 LWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143
WF N K I N + SN L ++ + G Y C A N G Q +
Sbjct: 227 SWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 30 RAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRL 89
R + T + E T +L ++ + F ++P + K+G+D C+VS++P A +
Sbjct: 76 RCQATDAKGQTQEATVVLEIY----QKLTFREVVSPQEFKQGEDAEVVCRVSSSP-APAV 130
Query: 90 LWFHNDKEI 98
W ++++E+
Sbjct: 131 SWLYHNEEV 139
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 42 EDTWILNV-HFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHND---KE 97
ED ++ V P V +F ++ ++ EG F+C+V P ++WF +D KE
Sbjct: 26 EDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPE-VMWFKDDNPVKE 84
Query: 98 IHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
H N SL + +V +Y+C A+N+ G +L
Sbjct: 85 SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 62 SLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQ 121
S N T + G+++ F C+ S +P + WF N K I N + SN L ++ +
Sbjct: 11 SFNAT-AERGEEMTFSCRASGSPEPA-ISWFRNGKLIEENEKYILKGSNTELTVRNIINS 68
Query: 122 SAGEYSCMAINTEGRGASQPII 143
G Y C A N G Q +
Sbjct: 69 DGGPYVCRATNKAGEDEKQAFL 90
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+K+G DV C+V+ P A ++W HN K + G +++ LV++ V G Y
Sbjct: 321 VKQGQDVTIPCKVTGLP-APNVVWSHNAKPLS---GGRATVTDSGLVIKGVKNGDKGYYG 376
Query: 128 CMAINTEG 135
C A N G
Sbjct: 377 CRATNEHG 384
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDI-KEGDDVYFECQVS 81
D + TC A N +S L V PR F L P+ I K+ + +EC++
Sbjct: 72 DAGQYTCYASNVAGKDSCSAQ---LGVQAPPR----FIKKLEPSRIVKQDEHTRYECKIG 124
Query: 82 ANPRAHRLLWFHNDKEIHHN--VTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132
+P ++LW+ ++ EI + + S L + +S + +G+Y+C A N
Sbjct: 125 GSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH--HNVTGGIILSNISLVLQKVSRQSAG 124
D+ G+ F+C V+ ++ W +++EI N ++ + +L + KV++ AG
Sbjct: 16 DLALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 125 EYSCMAINTEGR 136
+Y+C A N G+
Sbjct: 75 QYTCYASNVAGK 86
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+D+ TC A N + SS L V P F +P + +G DV+ EC++
Sbjct: 165 EDSGDYTCEAHNAAGSASSST---SLKVKEPPV----FRKKPHPVETLKGADVHLECELQ 217
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSNI--SLVLQKVSRQSAGEYSCMAINTEG 135
P ++ W + +E+ I+ N S+ + V GEY C A N G
Sbjct: 218 GTP-PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 29 CRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPT--DIKEGDDVYFECQVSANPR 85
C A N L A+SS + T L+ H VP L P D+ G+ F+C V+
Sbjct: 174 CSASNPLGTASSSAKLT--LSEHEVPPFF-----DLKPVSVDLALGESGTFKCHVTGTAP 226
Query: 86 AHRLLWFHNDKEIH--HNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
++ W +++EI N ++ + +L + KV++ AG+Y+C A N G+
Sbjct: 227 I-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDI-KEGDDVYFECQVS 81
D + TC A N +S L V PR F L P+ I K+ + +EC++
Sbjct: 264 DAGQYTCYASNVAGKDSCSAQ---LGVQEPPR----FIKKLEPSRIVKQDEHTRYECKIG 316
Query: 82 ANPRAHRLLWFHNDKEIHHN--VTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132
+P ++LW+ ++ EI + + S L + +S + +G+Y+C A N
Sbjct: 317 GSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN--ISLVL 115
+F L + G+ + +C+V P R+ W+ ++ + N SLV+
Sbjct: 7 YFIEPLEHVEAAIGEPITLQCKVDGTPEI-RIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 116 QKVSRQSAGEYSCMAINTEGRGASQPIIL 144
KV GEY+C A N+ G AS +++
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLV 94
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+D+ TC A N + SS L V P F +P + +G DV+ EC++
Sbjct: 357 EDSGDYTCEAHNAAGSASSST---SLKVKEPPV----FRKKPHPVETLKGADVHLECELQ 409
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSNI--SLVLQKVSRQSAGEYSCMAINTEG 135
P ++ W + +E+ I+ N S+ + V GEY C A N G
Sbjct: 410 GTP-PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSA 82
D + TC+AEN++ A +S I P F L G V FEC+++
Sbjct: 72 DVGEYTCKAENSVGAVASSAVLVIKERKLPPS----FARKLKDVHETLGFPVAFECRING 127
Query: 83 NPRAHRLLWFHNDKEIHH--NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGAS 139
+ ++ W+ + + + N+ I + +L + + + G+Y+C A N G +S
Sbjct: 128 S-EPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASS 185
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDI-KEGDDVYFECQVS 81
D + TC A N +S L V PR F L P+ I K+ + +EC++
Sbjct: 72 DAGQYTCYASNVAGKDSCSAQ---LGVQEPPR----FIKKLEPSRIVKQDEHTRYECKIG 124
Query: 82 ANPRAHRLLWFHNDKEIHHN--VTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132
+P ++LW+ ++ EI + + S L + +S + +G+Y+C A N
Sbjct: 125 GSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH--HNVTGGIILSNISLVLQKVSRQSAG 124
D+ G+ F+C V+ ++ W +++EI N ++ + +L + KV++ AG
Sbjct: 16 DLALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 125 EYSCMAINTEGR 136
+Y+C A N G+
Sbjct: 75 QYTCYASNVAGK 86
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+D+ TC A N + SS L V P F +P + +G DV+ EC++
Sbjct: 165 EDSGDYTCEAHNAAGSASSST---SLKVKEPPV----FRKKPHPVETLKGADVHLECELQ 217
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSNI--SLVLQKVSRQSAGEYSCMAINTEG 135
P ++ W + +E+ I+ N S+ + V GEY C A N G
Sbjct: 218 GTP-PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+D + C +N + A S D+ ILNV + P S LN T + G+++ C +
Sbjct: 174 NDTASYKCETQNPVSARRS--DSVILNVLYGPDAPTI--SPLN-TSYRSGENLNLSCHAA 228
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134
+NP A + WF V G S L + ++ ++G Y+C A N++
Sbjct: 229 SNPPA-QYSWF---------VNGTFQQSTQELFIPNITVNNSGSYTCQAHNSD 271
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 22 DDNSKL-TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
+ NS L TC+A N+ +S I +P+ I SS N +++ D V F C+
Sbjct: 435 EKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSI---SSNNSKPVEDKDAVAFTCEP 491
Query: 81 SANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
A + LW+ N + + + + N +L L V+R A Y C N+ S
Sbjct: 492 EAQNTTY--LWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSD 549
Query: 141 PIILAV 146
P+ L V
Sbjct: 550 PVTLDV 555
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 16 FKPSADDDNS-KLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDV 74
F P+ +NS TC+A N +++ + T + + F +S N +++ D V
Sbjct: 251 FIPNITVNNSGSYTCQAHN---SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAV 307
Query: 75 YFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134
C+ + LW+ N++ + + + N +L L V+R G Y C N
Sbjct: 308 ALTCEPEIQNTTY--LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNEL 365
Query: 135 GRGASQPIILAV 146
S P+IL V
Sbjct: 366 SVDHSDPVILNV 377
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR 120
SS N +++ D V F C+ + LW+ N++ + + + N +L L V+R
Sbjct: 116 SSNNSKPVEDKDAVAFTCEPETQDATY--LWWVNNQSLPVSPRLQLSNGNRTLTLFNVTR 173
Query: 121 QSAGEYSCMAINTEGRGASQPIILAV 146
Y C N S +IL V
Sbjct: 174 NDTASYKCETQNPVSARRSDSVILNV 199
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIH----HNVTGGIILSNISLVLQKVSRQSA 123
I EG V F C+V+ NP+ ++ WF + K+I H + SL +
Sbjct: 20 IFEGMPVTFTCRVAGNPKP-KIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDD 78
Query: 124 GEYSCMAINTEGR 136
G Y+ MA N +GR
Sbjct: 79 GNYTIMAANPQGR 91
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 59 FGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH----HNVTGGIILSNISLV 114
F L I EG V F C+V+ NP+ ++ WF + K+I H + SL
Sbjct: 10 FEMKLKHYKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQISPKSDHYTIQRDLDGTCSLH 68
Query: 115 LQKVSRQSAGEYSCMAINTEGR 136
+ G Y+ MA N +GR
Sbjct: 69 TTASTLDDDGNYTIMAANPQGR 90
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 21 DDDNSKLTCRAEN---------TLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEG 71
DDD+S LT N + A + +NV +++ F ++ P + KEG
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM--FKNAPTPQEFKEG 115
Query: 72 DDVYFECQ-VSANPRAHRLLWFHNDKE-IHHNVTGGIILSNISLVLQKVSRQSAGEYSCM 129
+D C VS+ P ++W H ++ I I+LSN L ++ + + G Y C
Sbjct: 116 EDAVIVCDVVSSLPPT--IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC- 172
Query: 130 AINTEGR 136
EGR
Sbjct: 173 ----EGR 175
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFH-NDKEIHHNVTGGIILSN----ISLVLQKVSRQ 121
+I G+ +F CQV+ + + + WF N +++ N ++ N +L + +
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 122 SAGEYSCMAINTEG 135
AG Y C+ +G
Sbjct: 73 DAGIYKCVVTAEDG 86
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 21 DDDNSKLTCRAEN---------TLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEG 71
DDD+S LT N + A + +NV +++ F ++ P + KEG
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM--FKNAPTPQEFKEG 115
Query: 72 DDVYFECQ-VSANPRAHRLLWFHNDKE-IHHNVTGGIILSNISLVLQKVSRQSAGEYSCM 129
+D C VS+ P ++W H ++ I I+LSN L ++ + + G Y C
Sbjct: 116 EDAVIVCDVVSSLPPT--IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC- 172
Query: 130 AINTEGR 136
EGR
Sbjct: 173 ----EGR 175
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFH-NDKEIHHNVTGGIILSN----ISLVLQKVSRQ 121
+I G+ +F CQV+ + + + WF N +++ N ++ N +L + +
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 122 SAGEYSCMAINTEG 135
AG Y C+ +G
Sbjct: 73 DAGIYKCVVTAEDG 86
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV-HFVP-RVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V P R ++ G N T + G DV F C+V
Sbjct: 191 DRGNYTCVVENKF---GSIRQTYTLDVLERSPHRPILQAGLPANQTAVL-GSDVEFHCKV 246
Query: 81 SANPRAHRLLWFH----NDKEIHHNVTGGIILSNIS-----------LVLQKVSRQSAGE 125
++ + H + W N ++ + T + + + L L V+ + AGE
Sbjct: 247 YSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305
Query: 126 YSCMAINTEG 135
Y+C+A N+ G
Sbjct: 306 YTCLAGNSIG 315
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIH--HNVTGGIIL--SNISLVLQKVSRQSA 123
+ + V F C + NP + W N +E H + GGI L SLV++ V
Sbjct: 135 VPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRI-GGIKLRHQQWSLVMESVVPSDR 192
Query: 124 GEYSCMAINTEG 135
G Y+C+ N G
Sbjct: 193 GNYTCVVENKFG 204
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV-HFVP-RVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V P R ++ G N T + G DV F C+V
Sbjct: 83 DRGNYTCVVENKF---GSIRQTYTLDVLERSPHRPILQAGLPANQTAVL-GSDVEFHCKV 138
Query: 81 SANPRAHRLLWFH----NDKEIHHNVTGGIIL----------SNISLVLQKVSRQSAGEY 126
++ + H + W N ++ + T + + +++ L L VS + GEY
Sbjct: 139 YSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEY 197
Query: 127 SCMAIN 132
C A N
Sbjct: 198 LCRATN 203
Score = 32.3 bits (72), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIH--HNVTGGIIL--SNISLVLQKVSRQSA 123
+ + V F C + NP + W N +E H + GGI L SLV++ V
Sbjct: 27 VPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRI-GGIKLRHQQWSLVMESVVPSDR 84
Query: 124 GEYSCMAINTEG 135
G Y+C+ N G
Sbjct: 85 GNYTCVVENKFG 96
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 27 LTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTD--IKEGDDVYFECQVSANP 84
TC A N + T LNV+ PR + L PTD +G D EC+ P
Sbjct: 692 FTCHARNLA---GHQQFTTPLNVYVPPRWI------LEPTDKAFAQGSDAKVECKADGFP 742
Query: 85 RAHRLLWF---------HNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+ ++ W + D + N+ + +L + + + + G Y C AIN G
Sbjct: 743 KP-QVTWKKAVGDTPGEYKDLKKSDNIR----VEEGTLHVDNIQKTNEGYYLCEAINGIG 797
Query: 136 RGASQPIILAVK 147
G S I+++V+
Sbjct: 798 SGLSAVIMISVQ 809
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 22/130 (16%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N T + G +V F C+V
Sbjct: 84 DKGNYTCIVENEY---GSINHTYQLDVVERSPHRPILQAGLPANKT-VALGSNVEFMCKV 139
Query: 81 SANPRAHRLLWFH----NDKEIHHN--------VTGGIILSNIS---LVLQKVSRQSAGE 125
++P+ H + W N +I + T G+ ++ L L+ VS + AGE
Sbjct: 140 YSDPQPH-IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGE 198
Query: 126 YSCMAINTEG 135
Y+C+A N+ G
Sbjct: 199 YTCLAGNSIG 208
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 22/130 (16%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N T + G +V F C+V
Sbjct: 85 DKGNYTCIVENEY---GSINHTYQLDVVERSPHRPILQAGLPANKT-VALGSNVEFMCKV 140
Query: 81 SANPRAHRLLWFH----NDKEIHHN--------VTGGIILSNIS---LVLQKVSRQSAGE 125
++P+ H + W N +I + T G+ ++ L L+ VS + AGE
Sbjct: 141 YSDPQPH-IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGE 199
Query: 126 YSCMAINTEG 135
Y+C+A N+ G
Sbjct: 200 YTCLAGNSIG 209
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 22/130 (16%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N T + G +V F C+V
Sbjct: 84 DKGNYTCIVENEY---GSINHTYQLDVVERSPHRPILQAGLPANKT-VALGSNVEFMCKV 139
Query: 81 SANPRAHRLLWFH----NDKEIHHN--------VTGGIILSNIS---LVLQKVSRQSAGE 125
++P+ H + W N +I + T G+ ++ L L+ VS + AGE
Sbjct: 140 YSDPQPH-IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGE 198
Query: 126 YSCMAINTEG 135
Y+C+A N+ G
Sbjct: 199 YTCLAGNSIG 208
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI---SLV 114
HF + ++EG +C+VS P L W + K + + +++ SL+
Sbjct: 11 HFLQAPGDLTVQEGKLCRMDCKVSGLPTPD-LSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 115 LQKVSRQSAGEYSCMAINTEGRGA-SQPIILAVK 147
++ V+ + AG Y+C+A N G+ + S +++A K
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQ-VSANPRAHRLLWFHNDKE-IHHNVTGGIILSNISLV 114
+ F ++ P + KEG+D C VS+ P ++W H ++ I I+LSN L
Sbjct: 2 VMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT--IIWKHKGRDVILKKDVRFIVLSNNYLQ 59
Query: 115 LQKVSRQSAGEYSCMAINTEGR 136
++ + + G Y C EGR
Sbjct: 60 IRGIKKTDEGTYRC-----EGR 76
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 54 RVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHH---NVTGGIILSN 110
V F S L + EG D +C V P R+ W N + I + G+
Sbjct: 9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTP-VPRITWLLNGQPIQYARSTCEAGV---- 63
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEGR 136
L +Q + G Y+C+A N G+
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQ 89
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 53 PRVVIHFGSSLNPTD--IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG--IIL 108
PR++ H PTD +K+ + C+V P + WF + + + N +
Sbjct: 10 PRIIEH------PTDLVVKKNEPATLNCKVEGKPEPT-IEWFKDGEPVSTNEKKSHRVQF 62
Query: 109 SNISL----VLQKVSRQSAGEYSCMAINTEGRGASQ 140
+ +L +Q Q GEY C+A N G+ S+
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 53 PRVVIHFGSSLNPTD--IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG--IIL 108
PR++ H PTD +K+ + C+V P + WF + + + N +
Sbjct: 10 PRIIEH------PTDLVVKKNEPATLNCKVEGKPEPT-IEWFKDGEPVSTNEKKSHRVQF 62
Query: 109 SNISL----VLQKVSRQSAGEYSCMAINTEGRGASQ 140
+ +L +Q Q GEY C+A N G+ S+
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 38 NSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKE 97
N + EDT + F P + F + T G V EC NP R+ W D
Sbjct: 195 NLAAEDTRL----FAPSIKARFPAE---TYALVGQQVTLECFAFGNP-VPRIKWRKVDGS 246
Query: 98 IHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
+ T + +L + VS + G Y C A N++GR Q I+
Sbjct: 247 LSPQWT----TAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRII 289
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEI------HHNVTGGIILSNISLV 114
S L P + E + V C+ A+P A W N E+ H + GG ++ +
Sbjct: 12 SVLFPEESTE-EQVLLACRARASPPAT-YRWKMNGTEMKLEPGSRHQLVGGNLV-----I 64
Query: 115 LQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
+ Q AG Y C+A N G S+ IL
Sbjct: 65 MNPTKAQDAGVYQCLASNPVGTVVSREAIL 94
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+D C AEN S DT + + + + ++ T+ G ++ + C +
Sbjct: 266 EDEGTYECEAEN-----SKGRDT--VQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAA 318
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
PR + W N + + ++ + L K+S + +G Y C+A N G
Sbjct: 319 GKPRPT-VRWLRNGEPLASQNRVEVLAGD--LRFSKLSLEDSGMYQCVAENKHG 369
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 78 CQVSANPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVLQKVSRQSAGEYSCMAINTEG 135
C S NP + WF + + + + G I L + +L ++ G+Y C+A N+ G
Sbjct: 130 CAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Query: 136 RGASQPIILAVK 147
S P L V+
Sbjct: 189 VRYSSPANLYVR 200
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 59 FGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH-------HNVTGGIILSNI 111
F SL ++EG DV +V P+ + W N + + GG+
Sbjct: 8 FKVSLMDQSVREGQDVIMSIRVQGEPKPV-VSWLRNRQPVRPDQRRFAEEAEGGLC---- 62
Query: 112 SLVLQKVSRQSAGEYSCMAINTEG 135
L + R AG Y+C A+N G
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYG 86
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP + W N KE + GG + N SL+++ V G
Sbjct: 23 VPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 82 NYTCVVENEYG 92
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N + + G DV F C+V
Sbjct: 79 DKGNYTCVVENEY---GSINHTYHLDVVERSPHRPILQAGLPANASTVV-GGDVEFVCKV 134
Query: 81 SANPRAHRLLWFHNDKEIHHNVTGGIILSNI--------------SLVLQKVSRQSAGEY 126
++ + H H +K G+ + L ++ V+ + AGEY
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Query: 127 SCMAINTEG 135
+C+A N+ G
Sbjct: 195 TCLAGNSIG 203
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNVHFVPR--VVIHFGSSLNPTDIKEGDDVYFECQV 80
D + C A N+L ++ +L +P I G L +++G C
Sbjct: 76 DEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK--VVEKGRTATMLCAA 133
Query: 81 SANPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138
NP + WF + + + G I L + +L ++ G+Y C+A N+ G
Sbjct: 134 GGNPDPE-ISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRY 192
Query: 139 SQPIILAVK 147
S P L V+
Sbjct: 193 SAPANLYVR 201
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR-QSA 123
P D +E V C+V NP+ H + W N ++ + + + SL++ ++ Q A
Sbjct: 18 PLDSEE-KKVKLSCEVKGNPKPH-IRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDA 75
Query: 124 GEYSCMAINTEG 135
G Y C+A N+ G
Sbjct: 76 GTYQCIATNSFG 87
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 50 HFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHND-----KEIHHNVTG 104
+ P++ + F ++ ++G V EC NP +LW D ++ + +
Sbjct: 202 EYEPKIEVQFPETV---PAEKGTTVKLECFALGNP-VPTILWRRADGKPIARKARRHKSN 257
Query: 105 GIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
GI L + ++ AG Y C+A N+ G+ ++
Sbjct: 258 GI------LEIPNFQQEDAGSYECVAENSRGKNVAK 287
>pdb|3SGJ|C Chain C, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|C Chain C, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 204
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ E D V +CQ + +P WFHN+ I + S + + +GEY
Sbjct: 19 VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS--------SYFIDAATVDDSGEYR 70
Query: 128 CMAINTEGRGASQPIILAV 146
C T+ S P+ L V
Sbjct: 71 C---QTQLSTLSDPVQLEV 86
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP + W N KE + GG + N SL+++ V G
Sbjct: 23 VPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 82 NYTCVVENEYG 92
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V + R ++ G N + + G DV F C+V
Sbjct: 79 DKGNYTCVVENEY---GSINHTYHLDVVERWPHRPILQAGLPANASTVV-GGDVEFVCKV 134
Query: 81 SANPRAHRLLWFHNDKEIHHNVTGGIILSNI--------------SLVLQKVSRQSAGEY 126
++ + H H +K G+ + L ++ V+ + AGEY
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Query: 127 SCMAINTEG 135
+C+A N+ G
Sbjct: 195 TCLAGNSIG 203
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR-QSA 123
P D +E V C+V NP+ H + W N ++ + + + SL++ ++ Q A
Sbjct: 17 PLDSEE-KKVKLSCEVKGNPKPH-IRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDA 74
Query: 124 GEYSCMAINTEG 135
G Y C+A N+ G
Sbjct: 75 GTYQCIATNSFG 86
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 50 HFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHND-----KEIHHNVTG 104
+ P++ + F ++ ++G V EC NP +LW D ++ + +
Sbjct: 201 EYEPKIEVQFPETV---PAEKGTTVKLECFALGNP-VPTILWRRADGKPIARKARRHKSN 256
Query: 105 GIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
GI L + ++ AG Y C+A N+ G+ ++
Sbjct: 257 GI------LEIPNFQQEDAGSYECVAENSRGKNVAK 286
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP + W N KE + GG + N SL+++ V G
Sbjct: 22 VPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 80
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 81 NYTCVVENEYG 91
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N + + G DV F C+V
Sbjct: 78 DKGNYTCVVENEY---GSINHTYHLDVVERSPHRPILQAGLPANASTVV-GGDVEFVCKV 133
Query: 81 SANPRAHRLLWFHNDKEIHHNVTGGIILSNI--------------SLVLQKVSRQSAGEY 126
++ + H H +K G+ + L ++ V+ + AGEY
Sbjct: 134 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 193
Query: 127 SCMAINTEG 135
+C+A N+ G
Sbjct: 194 TCLAGNSIG 202
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 78 CQVSANPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVLQKVSRQSAGEYSCMAINTEG 135
C S NP + WF + + + + G I L + +L ++ G+Y C+A N+ G
Sbjct: 130 CAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Query: 136 RGASQPIILAVK 147
S P L V+
Sbjct: 189 VRYSSPANLYVR 200
>pdb|3AY4|C Chain C, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 179
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ E D V +CQ + +P WFHN+ I + S + + +GEY
Sbjct: 17 VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS--------SYFIDAATVDDSGEYR 68
Query: 128 CMAINTEGRGASQPIILAV 146
C T+ S P+ L V
Sbjct: 69 C---QTQLSTLSDPVQLEV 84
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 30 RAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRL 89
R + T + E T +L ++ + F ++P + K+G+D C+VS++P A +
Sbjct: 74 RCQATDAKGQTQEATVVLEIY----QKLTFREVVSPQEFKQGEDAEVVCRVSSSP-APAV 128
Query: 90 LWFHNDKEI 98
W ++++E+
Sbjct: 129 SWLYHNEEV 137
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP + W N KE + GG + N SL+++ V G
Sbjct: 23 VPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 82 NYTCVVENEYG 92
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N + + G DV F C+V
Sbjct: 79 DKGNYTCVVENEY---GSINHTYHLDVVERSRHRPILQAGLPANASTVV-GGDVEFVCKV 134
Query: 81 SANPRAHRLLWFHNDKEIHHNVTGGIILSNI--------------SLVLQKVSRQSAGEY 126
++ + H H +K G+ + L ++ V+ + AGEY
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Query: 127 SCMAINTEG 135
+C+A N+ G
Sbjct: 195 TCLAGNSIG 203
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 78 CQVSANPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVLQKVSRQSAGEYSCMAINTEG 135
C S NP + WF + + + + G I L + +L ++ G+Y C+A N+ G
Sbjct: 130 CAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Query: 136 RGASQPIILAVK 147
S P L V+
Sbjct: 189 VRYSSPANLYVR 200
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP + W N KE + GG + N SL+++ V G
Sbjct: 20 VPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 78
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 79 NYTCVVENEYG 89
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQ-KVSRQSAGE 125
++ + D V CQ + +P + + WFHN G +I ++ + K + +GE
Sbjct: 15 NVLQEDSVTLTCQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGE 65
Query: 126 YSCMAINTEGRGASQPIILAV 146
Y+C T S P+ L V
Sbjct: 66 YTCQTGQT---SLSDPVHLTV 83
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP + W N KE + GG + N SL+++ V G
Sbjct: 21 VPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 79
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 80 NYTCVVENEYG 90
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N + + G DV F C+V
Sbjct: 77 DKGNYTCVVENEY---GSINHTYHLDVVERSRHRPILQAGLPANASTVV-GGDVEFVCKV 132
Query: 81 SANPRAHRLLWFHNDKEIHHNVTGGIILSNI--------------SLVLQKVSRQSAGEY 126
++ + H H +K G+ + L ++ V+ + AGEY
Sbjct: 133 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 192
Query: 127 SCMAINTEG 135
+C+A N+ G
Sbjct: 193 TCLAGNSIG 201
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQ-KVSRQSAGE 125
++ + D V CQ + +P + + WFHN G +I ++ + K + +GE
Sbjct: 15 NVLQEDSVTLTCQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGE 65
Query: 126 YSCMAINTEGRGASQPIILAV 146
Y+C T S P+ L V
Sbjct: 66 YTCQTGQT---SLSDPVHLTV 83
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQ-KVSRQSAGE 125
++ + D V CQ + +P + + WFHN G +I ++ + K + +GE
Sbjct: 15 NVLQEDSVTLTCQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGE 65
Query: 126 YSCMAINTEGRGASQPIILAV 146
Y+C T S P+ L V
Sbjct: 66 YTCQTGQT---SLSDPVHLTV 83
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP + W N KE + GG + N SL+++ V G
Sbjct: 24 VPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 82
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 83 NYTCVVENEYG 93
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQ-KVSRQSAGE 125
++ + D V CQ + +P + + WFHN G +I ++ + K + +GE
Sbjct: 15 NVLQEDSVTLTCQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGE 65
Query: 126 YSCMAINTEGRGASQPIILAV 146
Y+C T S P+ L V
Sbjct: 66 YTCQTGQT---SLSDPVHLTV 83
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQ-KVSRQSAGE 125
++ + D V CQ + +P + + WFHN G +I ++ + K + +GE
Sbjct: 12 NVLQEDSVTLTCQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGE 62
Query: 126 YSCMAINTEGRGASQPIILAV 146
Y+C T S P+ L V
Sbjct: 63 YTCQTGQT---SLSDPVHLTV 80
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP + W N KE + GG + N SL+++ V G
Sbjct: 25 VPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 83
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 84 NYTCVVENEYG 94
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 73 DVYFECQVSANPRAHRLLWFHNDKEI----HHNVTGGIILSNISLVLQKVSRQSAGEYSC 128
+V +C+V+ + ++W+ +++EI H+ GI +L++ + S++ AG Y
Sbjct: 238 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI----CTLLITEFSKKDAGIYEV 293
Query: 129 MAINTEGRGASQ 140
+ + G+ S+
Sbjct: 294 ILKDDRGKDKSR 305
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP + W N KE + GG + N SL+++ V G
Sbjct: 31 VPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 90 NYTCVVENEYG 100
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N + + G DV F C+V
Sbjct: 87 DKGNYTCVVENEY---GSINHTYHLDVVERSRHRPILQAGLPANASTVV-GGDVEFVCKV 142
Query: 81 SANPRAHRLLWFHNDKEIHHNVT---------------GGIILSNIS-LVLQKVSRQSAG 124
++ + H + W K + N + GI SN L L V+ AG
Sbjct: 143 YSDAQPH-IQWI---KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 125 EYSCMAINTEGRGASQPIILAV 146
EY C N G+ A+Q L V
Sbjct: 199 EYICKVSNYIGQ-ANQSAWLTV 219
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQ-KVSRQSAGE 125
++ + D V CQ + +P + + WFHN G +I ++ + K + +GE
Sbjct: 18 NVLQEDSVTLTCQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGE 68
Query: 126 YSCMAINTEGRGASQPIILAV 146
Y+C T S P+ L V
Sbjct: 69 YTCQTGQT---SLSDPVHLTV 86
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 72 DDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAGEYSC 128
+ V F C NP + W N KE + GG + N SL+++ V G Y+C
Sbjct: 35 NTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 93
Query: 129 MAINTEG 135
+ N G
Sbjct: 94 VVENEYG 100
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N + + G DV F C+V
Sbjct: 87 DKGNYTCVVENEY---GSINHTYHLDVVERSPHRPILQAGLPANASTVV-GGDVEFVCKV 142
Query: 81 SANPRAHRLLWFHNDKEIHHNVT---------------GGIILSNIS-LVLQKVSRQSAG 124
++ + H + W K + N + GI SN L L V+ AG
Sbjct: 143 YSDAQPH-IQWI---KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 125 EYSCMAINTEGRGASQPIILAV 146
EY C N G+ A+Q L V
Sbjct: 199 EYICKVSNYIGQ-ANQSAWLTV 219
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 73 DVYFECQVSANPRAHRLLWFHNDKEI----HHNVTGGIILSNISLVLQKVSRQSAGEYSC 128
+V +C+V+ + ++W+ +++EI H+ GI +L++ + S++ AG Y
Sbjct: 23 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI----CTLLITEFSKKDAGIYEV 78
Query: 129 MAINTEGRGASQ 140
+ + G+ S+
Sbjct: 79 ILKDDRGKDKSR 90
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 73 DVYFECQVSANPRAHRLLWFHNDKEI----HHNVTGGIILSNISLVLQKVSRQSAGEYSC 128
+V +C+V+ + ++W+ +++EI H+ GI +L++ + S++ AG Y
Sbjct: 133 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI----CTLLITEFSKKDAGIYEV 188
Query: 129 MAINTEGRGASQ 140
+ + G+ S+
Sbjct: 189 ILKDDRGKDKSR 200
>pdb|1FNL|A Chain A, Crystal Structure Of The Extracellular Domain Of A Human
Fcgriii
Length = 175
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ E D V +CQ + +P + WFHN+ I + S + + +GEY
Sbjct: 19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------SYFIDAATVNDSGEYR 70
Query: 128 CMAINTEGRGASQPIILAV 146
C T S P+ L V
Sbjct: 71 CQ---TNLSTLSDPVQLEV 86
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 78 CQVSANPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVLQKVSRQSAGEYSCMAINTEG 135
C S NP + WF + + + + G I L + L ++ G+Y C+A N+ G
Sbjct: 130 CAASGNPDPE-ITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAG 188
Query: 136 RGASQPIILAVK 147
S P L V+
Sbjct: 189 VRYSSPANLYVR 200
>pdb|1T83|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 176
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ E D V +CQ + +P + WFHN+ I + S + + +GEY
Sbjct: 19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------SYFIDAATVNDSGEYR 70
Query: 128 CMAINTEGRGASQPIILAV 146
C T S P+ L V
Sbjct: 71 CQ---TNLSTLSDPVQLEV 86
>pdb|1E4K|C Chain C, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4J|A Chain A, Crystal Structure Of The Soluble Human Fc-Gamma Receptor
Iii
Length = 176
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ E D V +CQ + +P + WFHN+ I + S + + +GEY
Sbjct: 20 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------SYFIDAATVNDSGEYR 71
Query: 128 CMAINTEGRGASQPIILAV 146
C T S P+ L V
Sbjct: 72 CQ---TNLSTLSDPVQLEV 87
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCM 129
EG D EC VS P W ++ I +L +L++ V+ +G Y+C+
Sbjct: 235 EGKDAVLECCVSGYP-PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCV 293
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 72 DDVYFECQVSANPRAHRLLWFHNDKEI-------HHNVTGGIILSNISLVLQKVSRQSAG 124
+ V C+ ANP A W N E+ + V G +++SN V + AG
Sbjct: 23 EKVTLTCRARANPPAT-YRWKMNGTELKMGPDSRYRLVAGDLVISN------PVKAKDAG 75
Query: 125 EYSCMAINTEG 135
Y C+A N G
Sbjct: 76 SYQCVATNARG 86
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIH----FGSSLNPTDIKEGDDVYFE 77
+D C AEN DT + R++IH + + T+ G D+ +
Sbjct: 267 EDEGTYECEAENI-----KGRDT------YQGRIIIHAQPDWLDVITDTEADIGSDLRWS 315
Query: 78 CQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
C S PR + W + + + I +S L K+ + +G Y C+A N G
Sbjct: 316 CVASGKPRPA-VRWLRDGQPLASQ--NRIEVSGGELRFSKLVLEDSGMYQCVAENKHG 370
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMA 130
G V EC NP ++ W +++ + T + S L +Q V + G Y C A
Sbjct: 222 GQMVTLECFAFGNP-VPQIKW----RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEA 276
Query: 131 INTEGRGASQPIIL 144
N +GR Q I+
Sbjct: 277 ENIKGRDTYQGRII 290
>pdb|4GOS|A Chain A, Crystal Structure Of Human B7-H4 Igv-Like Domain
Length = 125
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 106 IILSNISLVLQKVSRQSAGEYSCMAINTEGRG 137
+I+ N SL L+ V AG Y C I ++G+G
Sbjct: 79 VIVGNASLRLKNVQLTDAGTYKCYIITSKGKG 110
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI---SLVLQKVSRQSAG 124
I EG + +VS P A + W+ N + + + +I+S SL+ + V AG
Sbjct: 17 IDEGRFCRMDFKVSGLP-APDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAG 75
Query: 125 EYSCMAINTEG 135
Y+C+A N G
Sbjct: 76 AYACVAKNRAG 86
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 66 TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGE 125
T +KE D V C +N + W N + + + +N L + + R+ AGE
Sbjct: 120 TTVKELDSVTLTCL--SNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGE 177
Query: 126 YSC 128
Y C
Sbjct: 178 YQC 180
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQ-KVSRQSAGE 125
++ + D V C+ + +P + + WFHN G +I ++ + K + +GE
Sbjct: 15 NVLQEDSVTLTCRGTHSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGE 65
Query: 126 YSCMAINTEGRGASQPIILAV 146
Y+C T S P+ L V
Sbjct: 66 YTCQTGQT---SLSDPVHLTV 83
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 66 TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGE 125
T +KE D V C +N + W N + + + +N L + + R+ AGE
Sbjct: 120 TTVKELDSVTLTCL--SNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGE 177
Query: 126 YSC 128
Y C
Sbjct: 178 YQC 180
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N + + G DV F C+V
Sbjct: 79 DKGNYTCVVENEY---GSINHTYHLDVVERSPHRPILQAGLPANASTVV-GGDVEFVCKV 134
Query: 81 SANPRAHRLLWFHNDKEIHHNVTGGIILSNI--------------SLVLQKVSRQSAGEY 126
++ + H H +K G+ + L ++ V+ + AGEY
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Query: 127 SCMAINTEG 135
+C+A N+ G
Sbjct: 195 TCLAGNSIG 203
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP W N KE + GG + N SL+ + V G
Sbjct: 23 VPAANTVKFRCPAGGNPXP-TXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKG 81
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 82 NYTCVVENEYG 92
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 78 CQVSANPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVLQKVSRQSAGEYSCMAINTEG 135
C NP + WF + + + G I L + +L ++ G+Y C+A N+ G
Sbjct: 130 CAAGGNPDPE-ISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188
Query: 136 RGASQPIILAVK 147
S P L V+
Sbjct: 189 TRYSAPANLYVR 200
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLW--FHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGE 125
++ G DV F C + A+ L+W HN K + IL+ ++ V AG
Sbjct: 22 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILT-----IRNVQPSDAGT 76
Query: 126 YSCMAIN 132
Y C N
Sbjct: 77 YVCTGSN 83
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSN--ISLVLQKVSRQSAG 124
+ + V F C NP W N KE + GG + N SL+ + V G
Sbjct: 30 VPAANTVKFRCPAGGNPXP-TXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKG 88
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 89 NYTCVVENEYG 99
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNV--HFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
D TC EN S+ T+ L+V R ++ G N + + G DV F C+V
Sbjct: 86 DKGNYTCVVENEY---GSINHTYHLDVVERSPHRPILQAGLPANASTVV-GGDVEFVCKV 141
Query: 81 SANPRAHRLLWFHNDKEIHHNVT---------------GGIILSNIS-LVLQKVSRQSAG 124
++ + H + W K + N + GI SN L L V+ AG
Sbjct: 142 YSDAQPH-IQWI---KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 197
Query: 125 EYSCMAINTEGRGASQPIILAV 146
EY C N G+ A+Q L V
Sbjct: 198 EYICKVSNYIGQ-ANQSAWLTV 218
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ G D+ EC S P + W+ ++ + N +L + VS + +GEY
Sbjct: 234 VLRGMDLLLECIASGVPTPD-IAWYKKGGDLPSD-KAKFENFNKALRITNVSEEDSGEYF 291
Query: 128 CMAINTEG 135
C+A N G
Sbjct: 292 CLASNKMG 299
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 68 IKEGDDVYFECQVS-ANPRAHRLLWFHNDKEIHHNVTGGIILSNIS--LVLQKVSRQSAG 124
+ G+DV C++S A H W + K I + ++ LV++ S + AG
Sbjct: 20 VAPGEDVELRCELSRAGTPVH---WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAG 76
Query: 125 EYSC 128
EY+C
Sbjct: 77 EYTC 80
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEGR 136
++L L +V Q AG YSC+A N +G+
Sbjct: 245 LTLNLDQVDFQHAGNYSCVASNVQGK 270
>pdb|3EEH|A Chain A, The Crystal Structure Of The Domain Of The Putative Light
And Redox Sensing Histidine Kinase From Haloarcula
Marismortui
Length = 125
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 26 KLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTD----------IKEGDDVY 75
+ T L+ NS+ ED W +V + F + ++P D + +G+
Sbjct: 26 EFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLMDGESAD 85
Query: 76 FECQVSANPRAHRLLWFHND 95
EC+V+A R +W +
Sbjct: 86 VECRVNATEEYQRWVWIQGE 105
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 78 CQVSANPRAHRLLWFHNDKEIHHNVTGGIIL-----SNISLVLQKVSRQSAGEYSCMAIN 132
C S NP + WF + + + G I S +L +++ G+Y C+A N
Sbjct: 130 CAASGNPDPE-ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATN 188
Query: 133 TEGRGASQPIILAVK 147
+ G S P L V+
Sbjct: 189 SAGTRYSAPANLYVR 203
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 45 WILNVHFVPRVVIHFGSSLNPTDIKEG 71
+++N+ + + V+ G ++PTDI+EG
Sbjct: 145 YVINLKQIAKFVVGLGERVSPTDIEEG 171
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 52 VPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWF-HNDKEIHHNVTGGI-ILS 109
V +V F + N DI++ YF S A ++LW N+ EI + G ++
Sbjct: 114 VEELVTEFSAKYNNNDIQKKTGTYFNTYFS----AFKILWLIQNNPEIKQKIDDGTAVIG 169
Query: 110 NISLVL 115
NI+ L
Sbjct: 170 NINTWL 175
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 51 FVPRVVIHFGSSLNPTD--IKEGDDVYFECQVSANPR--------AHRLLWFHNDKEIHH 100
F PR+V H P+D + +G+ C+ P R+ +D H
Sbjct: 8 FPPRIVEH------PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 101 NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ L + +V + SR G Y C+A N G S L V
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 19/93 (20%)
Query: 64 NPTDI--KEGDDVYFECQVSANPRAH---RLLWFHN-----DKEIHHNVTGGIILSNISL 113
NP+D+ G+ ECQ PR H + W + DK+ + GG L
Sbjct: 117 NPSDVMVAVGEPAVMECQ---PPRGHPEPTISWKKDGSPLDDKDERITIRGG------KL 167
Query: 114 VLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
++ + AG+Y C+ N G S+ L V
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 52 VPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWF-HNDKEIHHNVTGGI-ILS 109
V +V F + N DI++ YF S A ++LW N+ EI + G ++
Sbjct: 110 VEELVTEFSAKYNNNDIQKKTGTYFNTYFS----AFKILWLIQNNPEIKQKIDDGTAVIG 165
Query: 110 NISLVL 115
NI+ L
Sbjct: 166 NINTWL 171
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 51 FVPRVVIHFGSSLNPTD--IKEGDDVYFECQVSANPR--------AHRLLWFHNDKEIHH 100
F PR+V H P+D + +G+ C+ P R+ +D H
Sbjct: 8 FPPRIVEH------PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 101 NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ L + +V + SR G Y C+A N G S L V
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNIS----LVLQKVSRQSAGE 125
EG+ V C+V A P A + WF + + + + I + N L + S G
Sbjct: 32 EGNQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90
Query: 126 YSCMAINTEGR 136
Y+C A+N G+
Sbjct: 91 YNCTAVNRIGQ 101
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
NP++ R F N + + TG LV +S GEYSC A N G
Sbjct: 151 TNPKSTRA--FSNSSYVLNPTTG-------ELVFDPLSASDTGEYSCEARNGYG 195
>pdb|1ZL6|A Chain A, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL6|B Chain B, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWFHND--KEIHHNVTGGIILSNIS 112
PT +K GD Y++ + ++ R L I++N++GGI+L +S
Sbjct: 57 PTSLKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELS 107
>pdb|1ZKX|A Chain A, Crystal Structure Of Glu158alaTHR159ALAASN160ALA- A Triple
Mutant Of Clostridium Botulinum Neurotoxin E Catalytic
Domain
pdb|1ZKX|B Chain B, Crystal Structure Of Glu158alaTHR159ALAASN160ALA- A Triple
Mutant Of Clostridium Botulinum Neurotoxin E Catalytic
Domain
Length = 420
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWFHND--KEIHHNVTGGIILSNIS 112
PT +K GD Y++ + ++ R L I++N++GGI+L +S
Sbjct: 57 PTSLKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELS 107
>pdb|1T3C|A Chain A, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
pdb|1T3C|B Chain B, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
Length = 421
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWFHND--KEIHHNVTGGIILSNIS 112
PT +K GD Y++ + ++ R L I++N++GGI+L +S
Sbjct: 57 PTSLKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELS 107
>pdb|1ZN3|A Chain A, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
pdb|1ZN3|B Chain B, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
Length = 420
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWFHND--KEIHHNVTGGIILSNIS 112
PT +K GD Y++ + ++ R L I++N++GGI+L +S
Sbjct: 57 PTSLKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELS 107
>pdb|1T3A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
pdb|1T3A|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
Length = 421
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWFHND--KEIHHNVTGGIILSNIS 112
PT +K GD Y++ + ++ R L I++N++GGI+L +S
Sbjct: 57 PTSLKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELS 107
>pdb|3D3X|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
pdb|3D3X|B Chain B, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
Length = 427
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWFHND--KEIHHNVTGGIILSNIS 112
PT +K GD Y++ + ++ R L I++N++GGI+L +S
Sbjct: 57 PTSLKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELS 107
>pdb|1ZL5|A Chain A, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL5|B Chain B, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWFHND--KEIHHNVTGGIILSNIS 112
PT +K GD Y++ + ++ R L I++N++GGI+L +S
Sbjct: 57 PTSLKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELS 107
>pdb|1ZKW|A Chain A, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
pdb|1ZKW|B Chain B, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
Length = 420
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWFHND--KEIHHNVTGGIILSNIS 112
PT +K GD Y++ + ++ R L I++N++GGI+L +S
Sbjct: 57 PTSLKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELS 107
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 20 ADDDNSKLTCRAENTLIANSSMEDTWIL-----NVHFVPRVVIHFGSSLNPTDIKEGDDV 74
A D++ C AEN + S + T + P + G+ + I+ G V
Sbjct: 75 AGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV----IEVGHTV 130
Query: 75 YFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134
C+ NP + + W N ++ + L + L ++ + G+Y C+A N+
Sbjct: 131 LMTCKAIGNPTPN-IYWIKNQTKVDMS-NPRYSLKDGFLQIENSREEDQGKYECVAENSM 188
Query: 135 GRGASQPIILAVK 147
G S+ L VK
Sbjct: 189 GTEHSKATNLYVK 201
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWFHND--KEIHHNVTGGIILSNIS 112
PT +K GD Y++ + ++ R L I++N++GGI+L +S
Sbjct: 58 PTSLKNGDSSYYDPNYLQSDEEKDRFLKIVTKIFNRINNNLSGGILLEELS 108
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 20 ADDDNSKLTCRAENTLIANSSMEDTWIL-----NVHFVPRVVIHFGSSLNPTDIKEGDDV 74
A D++ C AEN + S + T + P + G+ + I+ G V
Sbjct: 73 AGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV----IEVGHTV 128
Query: 75 YFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134
C+ NP + + W N ++ + L + L ++ + G+Y C+A N+
Sbjct: 129 LMTCKAIGNPTPN-IYWIKNQTKVDMS-NPRYSLKDGFLQIENSREEDQGKYECVAENSM 186
Query: 135 GRGASQPIILAVK 147
G S+ L VK
Sbjct: 187 GTEHSKATNLYVK 199
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFH-NDKEIHHNVTGGIILSN----ISLVLQKVSRQ 121
+I G+ +F CQV+ + + + WF N +++ N ++ N +L + +
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 122 SAGEYSCMAINTEG 135
AG Y C+ +G
Sbjct: 73 DAGIYKCVVTAEDG 86
>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
Obscurin
Length = 115
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLL-WFHNDKEIHHN 101
+H L D++EG F C++S P + + WF + +H N
Sbjct: 14 VHIIEDLEDVDVQEGSSATFRCRIS--PANYEPVHWFLDKTPLHAN 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,130,679
Number of Sequences: 62578
Number of extensions: 152522
Number of successful extensions: 600
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 142
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)