Query psy1595
Match_columns 147
No_of_seqs 122 out of 1236
Neff 11.9
Searched_HMMs 46136
Date Fri Aug 16 17:12:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.8 3E-17 6.5E-22 116.5 13.7 128 10-147 292-421 (1051)
2 cd05851 Ig3_Contactin-1 Third 99.7 8.4E-17 1.8E-21 85.6 9.9 80 64-147 9-88 (88)
3 cd04975 Ig4_SCFR_like Fourth i 99.7 8.7E-17 1.9E-21 87.3 8.9 81 64-146 11-99 (101)
4 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.3E-16 2.9E-21 85.2 9.5 81 64-147 11-91 (91)
5 cd05724 Ig2_Robo Second immuno 99.7 2E-16 4.4E-21 83.9 9.9 82 64-146 4-86 (86)
6 cd05745 Ig3_Peroxidasin Third 99.7 8.3E-17 1.8E-21 83.0 8.1 74 70-146 1-74 (74)
7 cd05867 Ig4_L1-CAM_like Fourth 99.7 2.1E-16 4.6E-21 81.9 8.9 75 71-147 1-76 (76)
8 cd05762 Ig8_MLCK Eighth immuno 99.7 2.3E-16 4.9E-21 85.5 9.3 82 64-147 8-91 (98)
9 cd05737 Ig_Myomesin_like_C C-t 99.7 3.8E-16 8.3E-21 83.8 9.7 81 64-146 9-92 (92)
10 KOG4194|consensus 99.7 3.5E-16 7.6E-21 105.6 10.9 128 10-146 572-703 (873)
11 cd05852 Ig5_Contactin-1 Fifth 99.7 2.2E-16 4.7E-21 81.0 7.7 73 71-146 1-73 (73)
12 PHA02826 IL-1 receptor-like pr 99.7 5.8E-16 1.3E-20 95.5 10.9 108 12-134 98-211 (227)
13 cd05730 Ig3_NCAM-1_like Third 99.7 3.1E-16 6.7E-21 84.7 8.6 80 65-146 12-92 (95)
14 KOG3513|consensus 99.7 5.5E-16 1.2E-20 110.3 11.9 129 10-147 384-514 (1051)
15 cd05892 Ig_Myotilin_C C-termin 99.7 3.1E-16 6.7E-21 80.7 7.8 71 74-146 1-75 (75)
16 cd05868 Ig4_NrCAM Fourth immun 99.7 4.8E-16 1E-20 80.5 8.5 75 71-147 1-76 (76)
17 cd05848 Ig1_Contactin-5 First 99.7 5.4E-16 1.2E-20 83.4 9.0 75 70-145 18-93 (94)
18 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 5.7E-16 1.2E-20 82.0 8.8 80 65-146 4-86 (86)
19 cd05865 Ig1_NCAM-1 First immun 99.7 1.1E-15 2.5E-20 82.3 9.6 83 64-147 8-96 (96)
20 cd05893 Ig_Palladin_C C-termin 99.7 3.5E-16 7.7E-21 80.5 7.1 71 74-146 1-75 (75)
21 cd05859 Ig4_PDGFR-alpha Fourth 99.7 9.7E-16 2.1E-20 83.3 8.6 80 65-146 12-99 (101)
22 cd05863 Ig2_VEGFR-3 Second imm 99.7 4.8E-16 1E-20 78.0 6.7 65 74-146 1-65 (67)
23 cd07693 Ig1_Robo First immunog 99.7 3.2E-15 6.9E-20 81.5 10.6 83 64-147 9-100 (100)
24 cd04978 Ig4_L1-NrCAM_like Four 99.7 1.1E-15 2.3E-20 79.3 8.2 75 71-147 1-76 (76)
25 cd05850 Ig1_Contactin-2 First 99.7 1.7E-15 3.7E-20 81.5 9.1 74 71-145 19-93 (94)
26 cd05728 Ig4_Contactin-2-like F 99.7 1.8E-15 3.9E-20 80.0 8.9 79 64-146 7-85 (85)
27 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 1.2E-15 2.6E-20 78.6 7.9 73 74-147 1-74 (74)
28 cd05866 Ig1_NCAM-2 First immun 99.7 2.1E-15 4.6E-20 80.5 9.0 80 64-146 8-91 (92)
29 cd04968 Ig3_Contactin_like Thi 99.7 3.6E-15 7.8E-20 79.4 9.7 80 64-147 9-88 (88)
30 cd04969 Ig5_Contactin_like Fif 99.7 1.4E-15 3E-20 78.2 7.7 73 71-146 1-73 (73)
31 cd05722 Ig1_Neogenin First imm 99.7 3.4E-15 7.4E-20 80.6 9.6 82 64-146 7-95 (95)
32 cd05723 Ig4_Neogenin Fourth im 99.6 2.9E-15 6.3E-20 76.5 8.5 71 73-146 1-71 (71)
33 cd04972 Ig_TrkABC_d4 Fourth do 99.6 2.8E-15 6E-20 80.2 8.8 81 64-146 8-90 (90)
34 cd05744 Ig_Myotilin_C_like Imm 99.6 2.3E-15 5E-20 77.7 8.2 71 74-146 1-75 (75)
35 cd05891 Ig_M-protein_C C-termi 99.6 3.8E-15 8.1E-20 79.9 9.2 81 64-146 9-92 (92)
36 PHA02785 IL-beta-binding prote 99.6 9.9E-15 2.1E-19 94.9 12.8 124 12-138 177-319 (326)
37 cd05760 Ig2_PTK7 Second immuno 99.6 3.5E-15 7.5E-20 77.4 8.6 72 74-146 1-74 (77)
38 cd05735 Ig8_DSCAM Eight immuno 99.6 4.5E-15 9.7E-20 78.9 9.1 75 71-147 1-82 (88)
39 cd04976 Ig2_VEGFR Second immun 99.6 1.5E-15 3.2E-20 77.6 6.9 69 74-146 1-69 (71)
40 cd05747 Ig5_Titin_like M5, fif 99.6 4.8E-15 1E-19 79.6 9.2 79 64-144 11-91 (92)
41 cd05857 Ig2_FGFR Second immuno 99.6 2.5E-15 5.5E-20 79.5 7.9 78 67-146 5-85 (85)
42 cd05856 Ig2_FGFRL1-like Second 99.6 3E-15 6.5E-20 78.7 7.2 78 67-146 5-82 (82)
43 cd05764 Ig_2 Subgroup of the i 99.6 7.8E-15 1.7E-19 75.6 8.4 73 71-146 1-74 (74)
44 cd05876 Ig3_L1-CAM Third immun 99.6 4.1E-15 8.9E-20 76.0 7.2 70 74-146 1-70 (71)
45 KOG4194|consensus 99.6 6.5E-15 1.4E-19 99.6 9.8 122 14-145 672-794 (873)
46 cd05864 Ig2_VEGFR-2 Second imm 99.6 6.7E-15 1.5E-19 74.7 7.1 67 75-145 2-69 (70)
47 cd05748 Ig_Titin_like Immunogl 99.6 1.3E-14 2.7E-19 74.8 8.2 71 74-146 2-74 (74)
48 cd04973 Ig1_FGFR First immunog 99.6 1.5E-14 3.3E-19 75.4 8.6 78 64-146 2-79 (79)
49 cd04977 Ig1_NCAM-1_like First 99.6 2.1E-14 4.5E-19 77.0 9.0 81 64-146 8-92 (92)
50 cd05749 Ig2_Tyro3_like Second 99.6 1.2E-14 2.6E-19 75.8 7.9 74 64-144 6-80 (81)
51 cd05726 Ig4_Robo Fhird immunog 99.6 1.5E-14 3.1E-19 77.4 8.4 74 71-146 1-81 (90)
52 cd05743 Ig_Perlecan_D2_like Im 99.6 1E-14 2.3E-19 75.9 7.6 69 71-140 1-71 (78)
53 cd05763 Ig_1 Subgroup of the i 99.6 1.2E-14 2.6E-19 75.1 7.8 72 74-147 1-75 (75)
54 cd05849 Ig1_Contactin-1 First 99.6 1.5E-14 3.3E-19 77.6 8.3 73 71-145 19-92 (93)
55 cd04974 Ig3_FGFR Third immunog 99.6 4.2E-14 9E-19 75.6 9.5 75 71-147 1-90 (90)
56 cd05869 Ig5_NCAM-1 Fifth immun 99.6 7.7E-14 1.7E-18 75.6 10.6 80 65-146 11-97 (97)
57 PF07679 I-set: Immunoglobulin 99.6 3.8E-14 8.2E-19 75.8 9.1 81 64-146 8-90 (90)
58 cd05733 Ig6_L1-CAM_like Sixth 99.6 2.2E-14 4.7E-19 74.4 7.8 70 74-144 1-76 (77)
59 cd05725 Ig3_Robo Third immunog 99.6 1.6E-14 3.5E-19 73.4 7.2 69 74-146 1-69 (69)
60 cd07702 Ig2_VEGFR-1 Second imm 99.6 1.3E-14 2.8E-19 73.8 6.6 70 75-146 2-72 (72)
61 cd05734 Ig7_DSCAM Seventh immu 99.6 2.4E-14 5.2E-19 74.7 7.9 72 74-146 1-79 (79)
62 cd05746 Ig4_Peroxidasin Fourth 99.6 1.1E-14 2.4E-19 74.0 6.1 68 74-144 1-68 (69)
63 cd05874 Ig6_NrCAM Sixth immuno 99.6 3.1E-14 6.8E-19 73.8 7.6 70 74-144 1-76 (77)
64 cd05870 Ig5_NCAM-2 Fifth immun 99.6 6.8E-14 1.5E-18 75.9 9.3 81 64-146 9-98 (98)
65 cd04967 Ig1_Contactin First Ig 99.6 4E-14 8.6E-19 75.8 8.2 72 70-142 18-90 (91)
66 cd05858 Ig3_FGFR-2 Third immun 99.6 6E-14 1.3E-18 75.0 8.9 75 71-147 1-90 (90)
67 cd05854 Ig6_Contactin-2 Sixth 99.6 3.9E-14 8.5E-19 74.8 7.9 74 72-146 1-81 (85)
68 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 5.7E-14 1.2E-18 73.4 8.4 68 76-145 3-79 (81)
69 cd05752 Ig1_FcgammaR_like Frst 99.6 7E-14 1.5E-18 72.5 8.4 71 64-146 8-78 (78)
70 cd05855 Ig_TrkB_d5 Fifth domai 99.6 6.3E-14 1.4E-18 72.5 8.0 69 76-146 3-78 (79)
71 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.4E-13 3E-18 74.5 9.8 81 64-146 9-96 (96)
72 cd05731 Ig3_L1-CAM_like Third 99.6 3E-14 6.6E-19 72.8 6.8 71 74-147 1-71 (71)
73 cd04970 Ig6_Contactin_like Six 99.6 4.2E-14 9E-19 74.8 7.5 74 72-146 1-81 (85)
74 cd05875 Ig6_hNeurofascin_like 99.6 4.1E-14 8.9E-19 73.3 7.2 70 74-144 1-76 (77)
75 cd05773 Ig8_hNephrin_like Eigh 99.5 8.5E-14 1.8E-18 76.9 8.6 75 70-146 22-104 (109)
76 cd05853 Ig6_Contactin-4 Sixth 99.5 7.3E-14 1.6E-18 73.3 7.7 74 72-147 1-82 (85)
77 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 1.1E-13 2.4E-18 70.2 8.1 68 71-144 1-68 (69)
78 cd05736 Ig2_Follistatin_like S 99.5 1.6E-13 3.5E-18 71.0 8.9 71 74-146 1-73 (76)
79 cd05756 Ig1_IL1R_like First im 99.5 6.2E-14 1.3E-18 75.3 7.5 80 65-146 8-94 (94)
80 KOG4221|consensus 99.5 3.9E-13 8.4E-18 96.7 13.2 121 11-134 192-314 (1381)
81 cd05753 Ig2_FcgammaR_like Seco 99.5 1.1E-13 2.3E-18 72.7 8.0 75 65-146 8-83 (83)
82 cd04979 Ig_Semaphorin_C Immuno 99.5 1.9E-13 4.1E-18 72.9 8.2 80 65-146 5-86 (89)
83 KOG4221|consensus 99.5 9.6E-13 2.1E-17 94.8 13.5 136 4-147 93-229 (1381)
84 cd05758 Ig5_KIRREL3-like Fifth 99.5 4.5E-13 9.8E-18 72.7 9.1 80 64-144 9-97 (98)
85 cd05765 Ig_3 Subgroup of the i 99.5 2.8E-13 6E-18 71.0 7.9 74 71-146 1-81 (81)
86 PHA02785 IL-beta-binding prote 99.5 1.9E-12 4.2E-17 84.4 12.0 112 14-137 84-203 (326)
87 cd05771 IgC_Tapasin_R Tapasin- 99.5 6.1E-12 1.3E-16 72.5 11.6 115 13-135 2-132 (139)
88 cd05750 Ig_Pro_neuregulin Immu 99.4 6E-13 1.3E-17 68.7 6.3 63 75-138 2-70 (75)
89 cd05729 Ig2_FGFR_like Second i 99.4 4E-12 8.8E-17 67.1 9.1 78 67-146 5-85 (85)
90 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 3.2E-12 6.9E-17 67.4 8.4 76 71-147 1-83 (84)
91 cd05873 Ig_Sema4D_like Immunog 99.4 2.4E-12 5.2E-17 67.8 7.8 68 64-134 4-71 (87)
92 KOG4222|consensus 99.4 1.4E-12 3.1E-17 93.4 7.5 127 10-146 185-312 (1281)
93 cd05882 Ig1_Necl-1 First (N-te 99.4 8.6E-12 1.9E-16 67.0 8.9 80 64-146 5-95 (95)
94 cd05754 Ig3_Perlecan_like Thir 99.4 5.8E-12 1.3E-16 66.6 7.3 70 64-138 9-79 (85)
95 cd05898 Ig5_KIRREL3 Fifth immu 99.4 2E-11 4.3E-16 65.7 9.3 80 64-144 9-97 (98)
96 cd05742 Ig1_VEGFR_like First i 99.4 5.1E-12 1.1E-16 66.6 7.0 74 71-146 1-83 (84)
97 smart00408 IGc2 Immunoglobulin 99.4 1.4E-11 3.1E-16 61.0 8.1 63 70-135 1-63 (63)
98 cd05727 Ig2_Contactin-2-like S 99.4 8E-12 1.7E-16 66.8 7.1 72 64-136 11-85 (96)
99 cd05757 Ig2_IL1R_like Second i 99.3 1E-11 2.3E-16 66.3 7.3 67 67-136 6-77 (92)
100 cd05871 Ig_Semaphorin_classIII 99.3 3.6E-11 7.8E-16 64.2 8.9 78 67-147 7-89 (91)
101 KOG4222|consensus 99.3 3.6E-11 7.7E-16 86.5 10.9 118 22-147 103-223 (1281)
102 cd05895 Ig_Pro_neuregulin-1 Im 99.3 1.8E-11 3.9E-16 63.3 6.6 63 75-138 2-71 (76)
103 PF13895 Ig_2: Immunoglobulin 99.3 5.7E-11 1.2E-15 61.9 8.1 72 66-146 9-80 (80)
104 PF00047 ig: Immunoglobulin do 99.3 3.9E-11 8.4E-16 59.9 6.2 59 71-130 1-64 (64)
105 cd05885 Ig2_Necl-4 Second immu 99.3 1.4E-10 2.9E-15 60.0 8.2 62 74-136 2-68 (80)
106 cd07701 Ig1_Necl-3 First (N-te 99.3 9.4E-11 2E-15 63.1 8.0 80 64-146 5-95 (95)
107 cd05845 Ig2_L1-CAM_like Second 99.2 5.4E-11 1.2E-15 63.5 6.7 71 64-135 11-83 (95)
108 smart00410 IG_like Immunoglobu 99.2 6.1E-10 1.3E-14 58.4 10.4 81 65-147 3-86 (86)
109 smart00409 IG Immunoglobulin. 99.2 6.1E-10 1.3E-14 58.4 10.4 81 65-147 3-86 (86)
110 cd05860 Ig4_SCFR Fourth immuno 99.2 6.9E-10 1.5E-14 59.6 8.8 81 65-146 12-99 (101)
111 cd05862 Ig1_VEGFR First immuno 99.2 5.9E-10 1.3E-14 58.9 8.4 75 71-146 1-84 (86)
112 cd05751 Ig1_LILRB1_like First 99.2 5E-10 1.1E-14 59.9 8.2 80 65-147 10-91 (91)
113 cd05897 Ig2_IL1R2_like Second 99.1 4.1E-10 8.9E-15 60.3 7.2 69 67-136 6-80 (95)
114 cd07690 Ig1_CD4 First immunogl 99.1 1.9E-10 4.2E-15 61.5 5.4 69 67-136 3-90 (94)
115 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 1.8E-09 3.9E-14 58.2 8.2 70 65-134 9-93 (104)
116 cd05759 Ig2_KIRREL3-like Secon 99.1 2.3E-09 5E-14 56.2 8.3 72 74-146 2-82 (82)
117 cd05872 Ig_Sema4B_like Immunog 99.1 1.6E-09 3.5E-14 56.8 7.5 65 64-132 4-68 (85)
118 cd05717 Ig1_Necl-1-3_like Firs 99.1 4.2E-09 9E-14 56.8 9.0 80 64-146 5-95 (95)
119 cd05774 Ig_CEACAM_D1 First imm 99.0 4.8E-09 1E-13 57.3 8.0 82 64-146 6-105 (105)
120 cd05741 Ig_CEACAM_D1_like Firs 99.0 5.5E-09 1.2E-13 55.9 6.6 75 71-146 1-92 (92)
121 PF13927 Ig_3: Immunoglobulin 98.9 9.5E-09 2.1E-13 52.6 6.2 58 74-132 18-75 (75)
122 PHA02826 IL-1 receptor-like pr 98.9 1E-08 2.3E-13 63.6 7.2 81 64-146 30-132 (227)
123 cd05711 Ig_FcalphaRI Immunoglo 98.9 4.6E-08 1E-12 52.6 8.3 80 65-146 9-94 (94)
124 cd05883 Ig2_Necl-2 Second immu 98.9 6.2E-08 1.4E-12 50.3 8.0 71 74-146 2-79 (82)
125 cd05881 Ig1_Necl-2 First (N-te 98.8 9.5E-08 2.1E-12 51.2 8.3 69 64-133 5-84 (95)
126 cd04983 IgV_TCR_alpha_like Imm 98.8 1.2E-07 2.7E-12 52.3 8.8 70 64-134 6-93 (109)
127 cd05877 Ig_LP_like Immunoglobu 98.8 2.1E-07 4.6E-12 51.1 8.9 76 70-146 1-102 (106)
128 cd05879 Ig_P0 Immunoglobulin ( 98.8 2.8E-07 6.2E-12 51.3 9.3 82 65-146 7-116 (116)
129 cd05714 Ig_CSPGs_LP Immunoglob 98.7 1.8E-07 3.9E-12 51.4 8.0 76 70-146 1-102 (106)
130 cd05846 Ig1_MRC-OX-2_like Firs 98.7 3.7E-07 8.1E-12 49.3 9.1 76 71-147 1-97 (97)
131 cd05775 Ig_SLAM-CD84_like_N N- 98.7 4.8E-08 1E-12 52.8 5.2 76 70-146 3-96 (97)
132 cd05900 Ig_Aggrecan Immunoglob 98.7 3.5E-07 7.7E-12 50.6 8.6 36 110-146 73-108 (112)
133 cd05880 Ig_EVA1 Immunoglobulin 98.7 6E-07 1.3E-11 50.1 9.5 83 64-146 6-115 (115)
134 cd05718 Ig1_PVR_like First imm 98.7 4.9E-07 1.1E-11 48.9 8.9 37 110-147 61-98 (98)
135 cd05887 Ig1_Nectin-3_like Firs 98.7 9.3E-07 2E-11 47.5 9.4 37 110-147 59-96 (96)
136 cd00099 IgV Immunoglobulin var 98.7 3E-07 6.4E-12 50.4 7.5 68 67-135 2-91 (105)
137 cd07705 Ig2_Necl-1 Second immu 98.6 1.1E-06 2.5E-11 46.0 8.9 72 74-146 2-83 (83)
138 cd05878 Ig_Aggrecan_like Immun 98.6 1E-06 2.2E-11 48.7 9.1 35 111-146 72-106 (110)
139 cd05899 IgV_TCR_beta Immunoglo 98.6 5.8E-07 1.3E-11 49.7 7.9 68 64-133 6-94 (110)
140 cd04980 IgV_L_kappa Immunoglob 98.6 2.4E-07 5.2E-12 50.9 6.4 69 64-133 8-93 (106)
141 cd04984 IgV_L_lambda Immunoglo 98.6 3.4E-07 7.4E-12 49.6 6.6 66 67-133 2-85 (98)
142 cd05888 Ig1_Nectin-4_like Frst 98.6 1.8E-06 3.9E-11 46.9 9.3 37 110-147 63-100 (100)
143 cd05713 Ig_MOG_like Immunoglob 98.6 9.2E-07 2E-11 48.0 8.0 35 111-146 65-99 (100)
144 cd05886 Ig1_Nectin-1_like Firs 98.6 3.5E-06 7.7E-11 45.6 9.7 36 110-146 62-98 (99)
145 cd05715 Ig_P0-like Immunoglobu 98.6 2.9E-06 6.2E-11 47.4 9.7 83 64-146 6-116 (116)
146 cd05761 Ig2_Necl-1-4_like Seco 98.6 1.9E-06 4.2E-11 45.0 8.3 61 74-136 2-70 (82)
147 cd00098 IgC Immunoglobulin Con 98.5 5.9E-07 1.3E-11 48.3 6.1 67 69-135 11-86 (95)
148 cd07700 IgV_CD8_beta Immunoglo 98.5 2.4E-06 5.1E-11 47.1 7.8 67 67-133 2-94 (107)
149 cd05884 Ig2_Necl-3 Second immu 98.5 6.1E-06 1.3E-10 43.2 8.7 61 74-135 2-70 (83)
150 PHA02987 Ig domain OX-2-like p 98.5 5.3E-06 1.1E-10 49.4 9.2 81 65-146 24-121 (189)
151 cd04982 IgV_TCR_gamma Immunogl 98.4 3.5E-06 7.6E-11 47.0 7.6 68 64-132 6-98 (116)
152 PF07686 V-set: Immunoglobulin 98.4 1.8E-06 4E-11 47.7 6.1 82 64-146 9-114 (114)
153 cd05883 Ig2_Necl-2 Second immu 98.4 2.3E-06 5.1E-11 44.5 5.9 45 5-51 37-81 (82)
154 cd05772 IgC_SIRP Signal-regula 98.4 1.5E-05 3.3E-10 44.1 9.1 67 67-134 17-92 (111)
155 cd05902 Ig_Neurocan Immunoglob 98.3 9.1E-06 2E-10 44.9 7.5 35 111-146 72-106 (110)
156 cd05755 Ig2_ICAM-1_like Second 98.3 1.3E-05 2.8E-10 43.4 7.9 71 65-136 10-87 (100)
157 cd07706 IgV_TCR_delta Immunogl 98.3 1.5E-05 3.2E-10 44.6 8.4 70 64-133 7-94 (116)
158 cd00096 Ig Immunoglobulin doma 98.3 7.1E-06 1.5E-10 40.8 6.1 59 75-134 2-66 (74)
159 cd05716 Ig_pIgR Immunoglobulin 98.2 1.2E-05 2.5E-10 43.5 6.8 67 67-134 3-87 (98)
160 cd05901 Ig_Versican Immunoglob 98.2 4.9E-05 1.1E-09 42.3 9.2 36 110-146 78-113 (117)
161 smart00407 IGc1 Immunoglobulin 98.2 3.1E-05 6.7E-10 39.7 7.7 61 74-134 2-71 (75)
162 cd05885 Ig2_Necl-4 Second immu 98.2 7E-06 1.5E-10 42.5 5.2 39 9-47 40-78 (80)
163 cd05889 Ig1_DNAM-1_like First 98.2 7.6E-05 1.6E-09 40.2 9.1 34 110-144 59-93 (96)
164 cd05770 IgC_beta2m Class I maj 98.2 0.00013 2.9E-09 39.0 9.9 65 69-134 13-83 (93)
165 cd07699 IgC_L Immunoglobulin C 98.1 3.2E-05 6.9E-10 42.0 7.2 68 67-134 13-89 (100)
166 cd07694 Ig2_CD4 Second immunog 98.1 4.5E-05 9.7E-10 39.9 7.3 63 66-133 9-73 (88)
167 cd05766 IgC_MHC_II_beta Class 98.1 0.00014 3E-09 39.1 9.0 68 69-136 12-85 (94)
168 cd05767 IgC_MHC_II_alpha Class 98.1 0.00024 5.2E-09 38.1 9.6 64 71-134 15-84 (94)
169 cd07698 IgC_MHC_I_alpha3 Class 98.1 0.00029 6.4E-09 37.7 10.1 65 71-135 14-84 (93)
170 cd05847 IgC_CH2_IgE CH2 domain 98.0 6.8E-05 1.5E-09 40.2 7.2 67 70-136 13-88 (94)
171 cd05720 Ig_CD8_alpha Immunoglo 98.0 1.7E-05 3.7E-10 43.4 4.8 65 67-132 2-90 (104)
172 KOG3515|consensus 98.0 7.3E-06 1.6E-10 58.4 4.0 76 67-145 18-93 (741)
173 cd05735 Ig8_DSCAM Eight immuno 98.0 2.4E-05 5.3E-10 41.4 5.1 43 8-54 43-86 (88)
174 cd05768 IgC_CH4 CH4 domain (fo 98.0 9.6E-05 2.1E-09 40.3 7.2 69 68-136 13-93 (102)
175 cd05853 Ig6_Contactin-4 Sixth 98.0 1E-05 2.2E-10 42.6 3.0 39 12-53 47-85 (85)
176 cd04981 IgV_H Immunoglobulin ( 98.0 0.00018 3.8E-09 40.3 8.1 69 64-132 5-97 (117)
177 PF07654 C1-set: Immunoglobuli 97.9 0.00042 9.1E-09 36.2 8.2 64 70-136 7-79 (83)
178 cd07696 IgC_CH3 CH3 domain (th 97.9 0.00014 3.1E-09 39.2 6.4 71 65-135 8-87 (96)
179 cd05769 IgC_TCR_beta T cell re 97.8 0.00034 7.4E-09 39.0 7.8 69 68-136 15-94 (115)
180 PHA03376 BARF1; Provisional 97.8 0.0004 8.7E-09 41.7 8.4 74 14-96 89-163 (221)
181 cd07697 IgC_TCR_gamma T cell r 97.8 0.00058 1.3E-08 36.8 8.3 68 67-134 12-85 (96)
182 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00029 6.2E-09 39.6 7.3 70 64-133 7-102 (119)
183 cd05854 Ig6_Contactin-2 Sixth 97.8 7.5E-05 1.6E-09 39.3 4.5 39 11-53 46-85 (85)
184 cd07691 Ig_CD3_gamma_delta Imm 97.7 0.00024 5.3E-09 35.3 5.6 49 71-132 6-54 (69)
185 PF08205 C2-set_2: CD80-like C 97.7 0.00028 6.1E-09 37.3 6.0 64 71-135 14-85 (89)
186 cd04970 Ig6_Contactin_like Six 97.6 0.00012 2.6E-09 38.4 3.6 39 11-53 46-85 (85)
187 cd04986 IgC_CH2 CH2 domain (se 97.6 0.00097 2.1E-08 36.1 6.9 68 67-135 15-90 (99)
188 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.0023 5E-08 34.4 8.2 64 70-134 15-87 (95)
189 cd07704 Ig2_Nectin-3-4_like Se 97.5 0.0014 3E-08 35.3 7.2 69 66-135 11-85 (97)
190 cd05762 Ig8_MLCK Eighth immuno 97.5 0.00022 4.7E-09 38.6 4.1 41 11-55 55-96 (98)
191 cd05759 Ig2_KIRREL3-like Secon 97.5 0.00038 8.2E-09 36.2 4.7 39 9-48 43-81 (82)
192 KOG3515|consensus 97.5 0.00081 1.7E-08 48.6 7.5 116 12-134 59-186 (741)
193 smart00406 IGv Immunoglobulin 97.5 0.0005 1.1E-08 35.4 5.1 20 111-130 62-81 (81)
194 cd05761 Ig2_Necl-1-4_like Seco 97.4 0.00047 1E-08 36.0 4.4 31 8-38 41-71 (82)
195 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0023 4.9E-08 34.4 6.9 61 73-135 17-83 (95)
196 PHA03376 BARF1; Provisional 97.4 0.0015 3.2E-08 39.3 6.5 69 65-134 20-110 (221)
197 cd07705 Ig2_Necl-1 Second immu 97.4 0.00075 1.6E-08 35.3 4.8 39 9-47 43-81 (83)
198 cd04975 Ig4_SCFR_like Fourth i 97.4 0.00082 1.8E-08 36.6 5.0 38 10-50 63-100 (101)
199 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00091 2E-08 33.0 4.5 51 69-132 5-55 (65)
200 cd07703 Ig2_Nectin-2_like Seco 97.3 0.00068 1.5E-08 36.4 4.2 28 9-36 56-83 (95)
201 cd05865 Ig1_NCAM-1 First immun 97.3 0.0006 1.3E-08 36.7 3.9 37 11-49 59-95 (96)
202 cd05719 Ig2_PVR_like Second im 97.3 0.0046 1E-07 33.3 7.2 72 72-145 16-94 (95)
203 KOG1480|consensus 97.3 0.00014 3.1E-09 52.0 1.6 79 65-145 138-217 (909)
204 cd05773 Ig8_hNephrin_like Eigh 97.2 0.0012 2.7E-08 36.4 5.0 39 11-53 68-108 (109)
205 cd05719 Ig2_PVR_like Second im 97.2 0.001 2.2E-08 35.8 4.3 29 8-36 55-83 (95)
206 cd05863 Ig2_VEGFR-3 Second imm 97.2 0.00038 8.2E-09 34.9 2.4 26 11-36 30-55 (67)
207 cd04971 Ig_TrKABC_d5 Fifth dom 97.1 0.0022 4.7E-08 33.4 4.9 26 10-36 44-70 (81)
208 cd05859 Ig4_PDGFR-alpha Fourth 97.1 0.0011 2.3E-08 36.1 3.9 37 10-49 63-99 (101)
209 cd07689 Ig2_VCAM-1 Second immu 97.1 0.0061 1.3E-07 32.9 6.5 70 65-135 9-87 (99)
210 cd05738 Ig2_RPTP_IIa_LAR_like 97.1 0.0011 2.3E-08 33.8 3.6 36 12-49 38-73 (74)
211 cd04977 Ig1_NCAM-1_like First 97.1 0.0014 3.1E-08 34.9 4.2 36 10-48 55-91 (92)
212 cd05861 Ig1_PDGFR-alphabeta Fr 97.1 0.0031 6.8E-08 33.0 5.4 40 9-50 43-83 (84)
213 cd05884 Ig2_Necl-3 Second immu 97.1 0.0021 4.6E-08 33.6 4.7 30 8-37 42-71 (83)
214 cd05866 Ig1_NCAM-2 First immun 97.1 0.0011 2.4E-08 35.4 3.6 36 12-49 56-91 (92)
215 cd05734 Ig7_DSCAM Seventh immu 97.1 0.001 2.2E-08 34.3 3.4 35 12-48 44-78 (79)
216 PHA02633 hypothetical protein; 97.1 0.0014 3E-08 31.9 3.4 36 110-146 17-52 (63)
217 cd05864 Ig2_VEGFR-2 Second imm 97.0 0.00082 1.8E-08 34.0 2.4 24 12-36 34-58 (70)
218 cd05862 Ig1_VEGFR First immuno 97.0 0.0035 7.6E-08 33.0 4.8 38 9-50 47-85 (86)
219 cd05742 Ig1_VEGFR_like First i 96.9 0.0027 5.8E-08 33.2 4.2 27 9-36 46-73 (84)
220 cd05893 Ig_Palladin_C C-termin 96.9 0.0013 2.8E-08 33.7 2.8 24 13-36 42-65 (75)
221 cd05892 Ig_Myotilin_C C-termin 96.9 0.0016 3.5E-08 33.4 3.2 24 13-36 42-65 (75)
222 cd05740 Ig_CEACAM_D4 Fourth im 96.9 0.0016 3.5E-08 34.7 3.3 34 13-49 56-90 (91)
223 cd05745 Ig3_Peroxidasin Third 96.9 0.0015 3.3E-08 33.2 2.9 24 12-36 40-64 (74)
224 cd05748 Ig_Titin_like Immunogl 96.9 0.0026 5.6E-08 32.3 3.8 25 11-36 39-64 (74)
225 cd05763 Ig_1 Subgroup of the i 96.9 0.0029 6.2E-08 32.2 3.9 35 12-49 40-74 (75)
226 cd04974 Ig3_FGFR Third immunog 96.9 0.0026 5.7E-08 33.7 3.9 34 12-49 55-89 (90)
227 cd05869 Ig5_NCAM-1 Fifth immun 96.9 0.0032 6.9E-08 33.9 4.3 26 11-36 62-87 (97)
228 cd04976 Ig2_VEGFR Second immun 96.8 0.0012 2.5E-08 33.5 2.3 25 12-36 35-59 (71)
229 cd05852 Ig5_Contactin-1 Fifth 96.8 0.0015 3.3E-08 33.2 2.6 24 12-36 39-63 (73)
230 cd05724 Ig2_Robo Second immuno 96.8 0.0025 5.4E-08 33.3 3.6 35 12-48 51-85 (86)
231 cd05765 Ig_3 Subgroup of the i 96.8 0.0021 4.6E-08 33.2 3.2 25 12-36 47-71 (81)
232 cd05876 Ig3_L1-CAM Third immun 96.8 0.0023 5E-08 32.3 3.2 34 12-49 36-70 (71)
233 cd05730 Ig3_NCAM-1_like Third 96.8 0.0031 6.8E-08 33.7 3.8 35 12-50 58-93 (95)
234 cd05744 Ig_Myotilin_C_like Imm 96.8 0.0028 6E-08 32.4 3.4 24 13-36 42-65 (75)
235 cd05858 Ig3_FGFR-2 Third immun 96.8 0.0026 5.7E-08 33.7 3.4 35 12-49 55-89 (90)
236 cd05726 Ig4_Robo Fhird immunog 96.7 0.0042 9.2E-08 32.9 4.2 37 12-51 47-83 (90)
237 cd05732 Ig5_NCAM-1_like Fifth 96.7 0.0039 8.5E-08 33.4 4.1 26 11-36 61-86 (96)
238 cd05760 Ig2_PTK7 Second immuno 96.7 0.0048 1E-07 31.7 4.2 36 13-50 39-75 (77)
239 cd05855 Ig_TrkB_d5 Fifth domai 96.7 0.005 1.1E-07 31.9 4.1 26 10-36 42-68 (79)
240 cd05725 Ig3_Robo Third immunog 96.7 0.0024 5.3E-08 31.9 2.9 25 12-36 35-59 (69)
241 cd05731 Ig3_L1-CAM_like Third 96.7 0.0022 4.7E-08 32.2 2.7 24 12-36 36-60 (71)
242 PHA03270 envelope glycoprotein 96.7 0.1 2.3E-06 35.6 12.1 78 14-99 184-264 (466)
243 cd05894 Ig_C5_MyBP-C C5 immuno 96.7 0.0045 9.7E-08 32.6 3.9 25 11-36 51-76 (86)
244 cd05721 IgV_CTLA-4 Immunoglobu 96.7 0.036 7.7E-07 30.9 7.4 71 64-134 6-97 (115)
245 PHA03269 envelope glycoprotein 96.6 0.098 2.1E-06 36.4 10.6 80 14-100 291-373 (566)
246 cd05851 Ig3_Contactin-1 Third 96.6 0.0035 7.6E-08 33.1 3.1 33 13-49 54-87 (88)
247 cd05764 Ig_2 Subgroup of the i 96.6 0.0037 8.1E-08 31.7 3.1 25 12-36 40-64 (74)
248 PF07679 I-set: Immunoglobulin 96.5 0.0056 1.2E-07 32.2 3.8 27 10-36 54-80 (90)
249 cd05860 Ig4_SCFR Fourth immuno 96.5 0.015 3.2E-07 31.6 5.3 40 7-49 60-99 (101)
250 cd04978 Ig4_L1-NrCAM_like Four 96.5 0.0043 9.3E-08 31.6 3.0 35 12-49 41-75 (76)
251 cd05897 Ig2_IL1R2_like Second 96.5 0.0064 1.4E-07 32.7 3.6 24 12-35 55-78 (95)
252 cd04969 Ig5_Contactin_like Fif 96.5 0.0042 9E-08 31.5 2.9 23 13-36 40-63 (73)
253 cd05723 Ig4_Neogenin Fourth im 96.5 0.0055 1.2E-07 30.9 3.3 22 14-36 39-61 (71)
254 cd05856 Ig2_FGFRL1-like Second 96.5 0.0053 1.1E-07 31.6 3.3 25 12-36 48-72 (82)
255 cd05870 Ig5_NCAM-2 Fifth immun 96.4 0.0092 2E-07 32.2 4.1 24 12-36 64-88 (98)
256 cd04968 Ig3_Contactin_like Thi 96.4 0.0063 1.4E-07 32.0 3.4 35 11-49 52-87 (88)
257 cd05737 Ig_Myomesin_like_C C-t 96.4 0.0075 1.6E-07 32.1 3.6 24 12-36 58-82 (92)
258 cd05867 Ig4_L1-CAM_like Fourth 96.4 0.0062 1.4E-07 31.1 3.2 35 12-49 41-75 (76)
259 cd05746 Ig4_Peroxidasin Fourth 96.4 0.0041 8.9E-08 31.2 2.5 25 12-36 36-60 (69)
260 cd04972 Ig_TrkABC_d4 Fourth do 96.3 0.01 2.2E-07 31.4 4.1 25 11-36 55-80 (90)
261 cd05753 Ig2_FcgammaR_like Seco 96.3 0.0053 1.2E-07 32.1 2.9 35 12-49 48-83 (83)
262 PF11465 Receptor_2B4: Natural 96.3 0.0095 2.1E-07 32.4 3.8 40 107-146 67-106 (108)
263 cd05756 Ig1_IL1R_like First im 96.3 0.0059 1.3E-07 32.7 3.0 24 12-36 60-84 (94)
264 cd05743 Ig_Perlecan_D2_like Im 96.3 0.0073 1.6E-07 31.0 3.2 24 12-36 42-66 (78)
265 cd07693 Ig1_Robo First immunog 96.3 0.018 4E-07 30.8 4.9 28 19-49 72-99 (100)
266 cd05755 Ig2_ICAM-1_like Second 96.2 0.012 2.5E-07 32.0 3.9 29 8-36 58-86 (100)
267 cd05857 Ig2_FGFR Second immuno 96.2 0.011 2.3E-07 30.9 3.7 23 13-36 52-75 (85)
268 cd05757 Ig2_IL1R_like Second i 96.2 0.015 3.3E-07 31.0 4.2 26 11-36 51-76 (92)
269 cd07702 Ig2_VEGFR-1 Second imm 96.2 0.0055 1.2E-07 31.1 2.2 22 13-35 37-59 (72)
270 cd05736 Ig2_Follistatin_like S 96.1 0.017 3.6E-07 29.4 4.0 34 13-50 40-74 (76)
271 cd05758 Ig5_KIRREL3-like Fifth 96.1 0.017 3.7E-07 31.1 4.2 27 10-36 62-89 (98)
272 cd05733 Ig6_L1-CAM_like Sixth 96.1 0.013 2.8E-07 30.1 3.5 33 12-46 39-75 (77)
273 cd05898 Ig5_KIRREL3 Fifth immu 96.1 0.023 5E-07 30.8 4.5 31 7-37 59-90 (98)
274 cd05750 Ig_Pro_neuregulin Immu 96.0 0.013 2.7E-07 29.7 3.3 25 11-36 42-67 (75)
275 cd04973 Ig1_FGFR First immunog 96.0 0.01 2.2E-07 30.6 3.0 25 12-36 45-69 (79)
276 cd05868 Ig4_NrCAM Fourth immun 96.0 0.011 2.3E-07 30.3 3.0 34 13-49 42-75 (76)
277 cd05895 Ig_Pro_neuregulin-1 Im 96.0 0.014 3E-07 29.7 3.4 25 11-36 43-68 (76)
278 PF07354 Sp38: Zona-pellucida- 95.9 0.02 4.3E-07 36.4 4.4 48 85-134 12-60 (271)
279 PHA02633 hypothetical protein; 95.9 0.027 5.8E-07 27.5 3.9 36 13-52 20-55 (63)
280 cd07704 Ig2_Nectin-3-4_like Se 95.8 0.029 6.2E-07 30.3 4.2 29 8-36 57-85 (97)
281 cd05728 Ig4_Contactin-2-like F 95.8 0.015 3.3E-07 30.4 3.0 25 11-36 50-75 (85)
282 cd05891 Ig_M-protein_C C-termi 95.8 0.018 3.9E-07 30.7 3.3 24 12-36 58-82 (92)
283 cd05849 Ig1_Contactin-1 First 95.8 0.02 4.4E-07 30.6 3.5 33 12-47 57-91 (93)
284 cd05875 Ig6_hNeurofascin_like 95.7 0.021 4.5E-07 29.3 3.4 34 12-47 39-76 (77)
285 cd05752 Ig1_FcgammaR_like Frst 95.7 0.014 3.1E-07 30.1 2.7 32 12-49 47-78 (78)
286 PF08204 V-set_CD47: CD47 immu 95.7 0.02 4.4E-07 32.5 3.4 74 70-146 26-119 (130)
287 cd05747 Ig5_Titin_like M5, fif 95.6 0.024 5.2E-07 30.1 3.5 24 12-36 59-83 (92)
288 cd05713 Ig_MOG_like Immunoglob 95.6 0.031 6.7E-07 30.1 4.0 35 12-49 65-99 (100)
289 cd05886 Ig1_Nectin-1_like Firs 95.6 0.031 6.7E-07 30.3 3.8 34 12-49 63-98 (99)
290 cd05751 Ig1_LILRB1_like First 95.5 0.045 9.8E-07 29.1 4.3 41 9-49 50-90 (91)
291 cd05874 Ig6_NrCAM Sixth immuno 95.5 0.034 7.4E-07 28.5 3.6 33 12-46 39-75 (77)
292 PHA03273 envelope glycoprotein 95.3 0.29 6.3E-06 33.9 8.3 78 14-99 200-280 (486)
293 cd05850 Ig1_Contactin-2 First 95.3 0.041 8.9E-07 29.4 3.7 33 12-47 58-92 (94)
294 smart00407 IGc1 Immunoglobulin 95.3 0.068 1.5E-06 27.2 4.3 28 8-35 44-71 (75)
295 KOG4597|consensus 95.3 0.031 6.7E-07 38.5 3.7 78 67-146 207-291 (560)
296 PHA03042 CD47-like protein; Pr 95.3 0.27 5.8E-06 31.7 7.5 68 71-145 31-103 (286)
297 cd00098 IgC Immunoglobulin Con 95.2 0.035 7.5E-07 29.5 3.2 28 8-35 58-85 (95)
298 cd04979 Ig_Semaphorin_C Immuno 95.2 0.033 7.1E-07 29.3 3.1 35 13-50 52-87 (89)
299 cd05878 Ig_Aggrecan_like Immun 95.2 0.074 1.6E-06 29.4 4.5 37 11-50 71-107 (110)
300 cd05882 Ig1_Necl-1 First (N-te 95.1 0.052 1.1E-06 29.2 3.7 22 11-33 61-83 (95)
301 PF08205 C2-set_2: CD80-like C 95.1 0.039 8.5E-07 29.0 3.2 29 8-36 57-85 (89)
302 cd05722 Ig1_Neogenin First imm 95.0 0.067 1.4E-06 28.5 4.0 26 20-48 68-94 (95)
303 cd05877 Ig_LP_like Immunoglobu 95.0 0.051 1.1E-06 29.6 3.6 36 12-50 68-103 (106)
304 cd05729 Ig2_FGFR_like Second i 95.0 0.078 1.7E-06 27.3 4.1 25 12-36 51-75 (85)
305 cd05714 Ig_CSPGs_LP Immunoglob 95.0 0.049 1.1E-06 29.7 3.5 37 11-50 67-103 (106)
306 cd05848 Ig1_Contactin-5 First 94.9 0.063 1.4E-06 28.7 3.6 24 12-36 58-83 (94)
307 cd05749 Ig2_Tyro3_like Second 94.9 0.053 1.2E-06 28.2 3.2 25 10-36 47-71 (81)
308 smart00408 IGc2 Immunoglobulin 94.8 0.048 1E-06 25.9 3.0 24 12-35 39-62 (63)
309 cd05900 Ig_Aggrecan Immunoglob 94.7 0.11 2.5E-06 28.8 4.4 37 10-50 72-109 (112)
310 PF13895 Ig_2: Immunoglobulin 94.6 0.064 1.4E-06 27.2 3.2 30 17-49 51-80 (80)
311 cd05775 Ig_SLAM-CD84_like_N N- 94.6 0.061 1.3E-06 29.0 3.1 35 12-49 61-96 (97)
312 cd05727 Ig2_Contactin-2-like S 94.6 0.052 1.1E-06 29.3 2.8 24 12-36 60-84 (96)
313 PF00047 ig: Immunoglobulin do 94.5 0.027 5.8E-07 27.5 1.6 19 13-31 46-64 (64)
314 cd05896 Ig1_IL1RAPL-1_like Fir 94.4 0.084 1.8E-06 28.9 3.3 24 11-35 69-93 (104)
315 smart00409 IG Immunoglobulin. 94.3 0.18 3.9E-06 25.5 4.6 25 11-35 50-74 (86)
316 smart00410 IG_like Immunoglobu 94.3 0.18 3.9E-06 25.5 4.6 25 11-35 50-74 (86)
317 cd05718 Ig1_PVR_like First imm 94.3 0.15 3.2E-06 27.2 4.3 37 11-49 61-97 (98)
318 cd05888 Ig1_Nectin-4_like Frst 94.2 0.18 4E-06 27.3 4.5 35 11-49 63-99 (100)
319 PF13927 Ig_3: Immunoglobulin 94.2 0.066 1.4E-06 26.7 2.6 25 8-33 50-75 (75)
320 cd05754 Ig3_Perlecan_like Thir 94.0 0.058 1.3E-06 28.1 2.3 26 11-36 51-76 (85)
321 cd05871 Ig_Semaphorin_classIII 94.0 0.13 2.8E-06 27.4 3.6 36 12-50 53-89 (91)
322 cd05901 Ig_Versican Immunoglob 94.0 0.23 5E-06 27.9 4.6 35 12-50 79-114 (117)
323 cd05845 Ig2_L1-CAM_like Second 93.9 0.085 1.8E-06 28.4 2.7 25 12-36 58-83 (95)
324 cd05717 Ig1_Necl-1-3_like Firs 93.9 0.16 3.4E-06 27.1 3.8 23 12-35 62-85 (95)
325 cd05847 IgC_CH2_IgE CH2 domain 93.8 0.14 3.1E-06 27.4 3.6 28 8-35 59-86 (94)
326 cd07701 Ig1_Necl-3 First (N-te 93.8 0.14 3E-06 27.5 3.5 22 12-34 62-84 (95)
327 cd07689 Ig2_VCAM-1 Second immu 93.7 0.1 2.3E-06 28.2 2.8 26 10-35 61-86 (99)
328 cd07699 IgC_L Immunoglobulin C 93.6 0.14 3.1E-06 27.8 3.4 29 8-36 62-90 (100)
329 cd04986 IgC_CH2 CH2 domain (se 93.5 0.14 3E-06 27.9 3.1 29 8-36 62-90 (99)
330 PHA02865 MHC-like TNF binding 93.5 0.48 1E-05 31.7 6.1 22 73-94 216-238 (338)
331 cd07696 IgC_CH3 CH3 domain (th 93.4 0.16 3.4E-06 27.4 3.3 29 8-36 59-87 (96)
332 cd04967 Ig1_Contactin First Ig 93.4 0.094 2E-06 27.7 2.4 24 12-36 58-83 (91)
333 cd05887 Ig1_Nectin-3_like Firs 93.1 0.27 5.8E-06 26.6 3.9 36 11-49 59-95 (96)
334 cd05774 Ig_CEACAM_D1 First imm 93.1 0.18 3.8E-06 27.7 3.2 22 13-35 71-93 (105)
335 PHA03271 envelope glycoprotein 92.9 2.2 4.8E-05 29.6 11.4 80 14-101 209-292 (490)
336 cd05890 Ig2_Nectin-1_like Seco 92.9 0.49 1.1E-05 25.5 4.5 38 8-48 60-97 (98)
337 cd05902 Ig_Neurocan Immunoglob 92.8 0.31 6.6E-06 27.0 3.9 36 11-50 71-107 (110)
338 cd05768 IgC_CH4 CH4 domain (fo 92.7 0.19 4.2E-06 27.4 3.1 29 8-36 64-92 (102)
339 cd05741 Ig_CEACAM_D1_like Firs 92.7 0.2 4.2E-06 26.4 3.1 23 12-35 57-80 (92)
340 cd05879 Ig_P0 Immunoglobulin ( 92.6 0.31 6.7E-06 27.3 3.8 21 14-35 82-103 (116)
341 cd05846 Ig1_MRC-OX-2_like Firs 92.6 0.26 5.7E-06 26.4 3.5 36 11-49 60-96 (97)
342 cd05772 IgC_SIRP Signal-regula 92.6 0.31 6.8E-06 27.1 3.8 28 8-35 65-92 (111)
343 cd05715 Ig_P0-like Immunoglobu 92.2 0.45 9.7E-06 26.5 4.2 23 12-35 80-103 (116)
344 PF07686 V-set: Immunoglobulin 92.2 0.26 5.6E-06 26.8 3.2 24 11-34 78-101 (114)
345 cd07690 Ig1_CD4 First immunogl 91.9 0.12 2.6E-06 27.8 1.6 24 11-35 64-88 (94)
346 PHA02914 Immunoglobulin-like d 91.6 1.5 3.2E-05 30.2 6.5 68 67-134 275-369 (500)
347 cd05881 Ig1_Necl-2 First (N-te 91.0 0.62 1.3E-05 25.1 3.7 23 11-33 61-83 (95)
348 cd05880 Ig_EVA1 Immunoglobulin 91.0 0.65 1.4E-05 25.9 4.0 23 12-35 79-102 (115)
349 cd04985 IgC_CH1 CH1 domain (fi 90.9 0.52 1.1E-05 25.3 3.4 29 7-35 59-87 (95)
350 PHA02982 hypothetical protein; 90.5 2 4.3E-05 26.9 5.8 27 110-136 99-125 (251)
351 cd07698 IgC_MHC_I_alpha3 Class 90.0 0.99 2.1E-05 24.0 4.0 24 9-35 60-83 (93)
352 cd05711 Ig_FcalphaRI Immunoglo 89.9 1.2 2.6E-05 23.8 4.3 25 9-33 52-76 (94)
353 cd04983 IgV_TCR_alpha_like Imm 89.9 0.86 1.9E-05 24.8 3.9 23 11-34 69-92 (109)
354 cd05769 IgC_TCR_beta T cell re 87.9 0.96 2.1E-05 25.3 3.1 29 8-36 64-93 (115)
355 PF05790 C2-set: Immunoglobuli 87.9 2.6 5.5E-05 22.0 7.2 23 109-131 41-63 (80)
356 cd04984 IgV_L_lambda Immunoglo 87.5 1.3 2.9E-05 23.7 3.5 24 10-33 61-84 (98)
357 cd04980 IgV_L_kappa Immunoglob 87.0 0.93 2E-05 24.7 2.7 23 11-33 70-92 (106)
358 cd05712 Ig_Siglec_N Immunoglob 86.6 2.4 5.3E-05 23.7 4.3 24 11-34 79-102 (119)
359 cd07700 IgV_CD8_beta Immunoglo 85.8 1.1 2.3E-05 24.5 2.6 23 11-33 71-93 (107)
360 PF11049 KSHV_K1: Glycoprotein 83.9 3.9 8.5E-05 20.3 4.9 43 76-132 3-45 (71)
361 PHA02987 Ig domain OX-2-like p 83.0 4 8.6E-05 25.1 4.2 40 11-52 84-124 (189)
362 PHA02914 Immunoglobulin-like d 81.3 16 0.00034 25.6 7.5 36 111-146 81-116 (500)
363 PF06328 Lep_receptor_Ig: Ig-l 80.4 6.9 0.00015 20.8 4.8 36 64-100 11-51 (89)
364 PF11465 Receptor_2B4: Natural 69.9 13 0.00029 20.6 3.6 35 14-50 73-107 (108)
365 COG5475 Uncharacterized small 69.3 7.4 0.00016 18.6 2.2 16 123-138 28-43 (60)
366 cd05890 Ig2_Nectin-1_like Seco 66.6 19 0.00041 19.6 6.5 72 73-146 22-98 (98)
367 PHA03282 envelope glycoprotein 66.5 24 0.00051 25.3 5.0 27 106-132 119-145 (540)
368 PHA03052 Hypothetical protein; 65.8 16 0.00034 18.4 3.8 34 64-98 5-41 (69)
369 PF07354 Sp38: Zona-pellucida- 61.6 24 0.00052 23.2 4.1 26 10-35 35-60 (271)
370 KOG3611|consensus 56.1 43 0.00093 25.7 5.2 60 73-134 571-635 (737)
371 PHA03286 envelope glycoprotein 54.7 33 0.00071 24.5 4.1 37 110-146 126-162 (492)
372 PF02480 Herpes_gE: Alphaherpe 54.7 4.1 8.9E-05 28.7 0.0 37 110-146 88-124 (439)
373 PHA03283 envelope glycoprotein 49.7 50 0.0011 24.1 4.4 36 110-146 133-168 (542)
374 PHA03240 envelope glycoprotein 46.6 76 0.0016 20.3 4.7 18 110-127 104-121 (258)
375 PHA03189 UL14 tegument protein 43.1 1.1E+02 0.0023 20.9 7.2 19 116-134 138-156 (348)
376 PHA03112 IL-18 binding protein 37.8 88 0.0019 18.5 5.9 70 69-138 36-123 (141)
377 PF02124 Marek_A: Marek's dise 37.8 1.1E+02 0.0024 19.5 11.4 78 8-97 35-116 (211)
378 PF11141 DUF2914: Protein of u 37.7 57 0.0012 16.2 5.2 57 88-145 8-64 (66)
379 PF13220 DUF4028: Protein of u 36.4 52 0.0011 15.6 2.1 17 121-137 8-24 (65)
380 KOG1026|consensus 31.8 45 0.00097 25.7 2.2 33 66-99 202-234 (774)
381 KOG1480|consensus 29.9 46 0.001 25.7 2.0 34 14-50 185-219 (909)
382 PF01688 Herpes_gI: Alphaherpe 29.1 1.4E+02 0.003 18.2 4.4 23 112-134 125-147 (161)
383 PF05083 LST1: LST-1 protein; 28.7 47 0.001 16.8 1.4 15 20-34 58-72 (74)
384 PHA03271 envelope glycoprotein 28.4 2.3E+02 0.005 20.4 10.5 55 5-59 305-360 (490)
385 PF11327 DUF3129: Protein of u 27.2 1.6E+02 0.0035 18.3 3.9 22 113-134 95-116 (184)
386 PHA03270 envelope glycoprotein 26.1 2.6E+02 0.0056 20.3 10.0 81 5-97 277-360 (466)
387 PHA03281 envelope glycoprotein 26.0 1.9E+02 0.0042 21.6 4.3 37 110-146 297-333 (642)
388 KOG0613|consensus 24.5 1.7E+02 0.0038 24.2 4.2 74 65-138 343-420 (1205)
389 PF09085 Adhes-Ig_like: Adhesi 20.8 1.7E+02 0.0036 16.1 3.0 34 66-99 11-48 (110)
390 PF06832 BiPBP_C: Penicillin-B 20.7 1.5E+02 0.0032 15.5 7.5 55 73-138 31-85 (89)
391 PHA02634 hypothetical protein; 20.5 71 0.0015 14.9 1.0 11 21-31 10-20 (49)
No 1
>KOG3513|consensus
Probab=99.76 E-value=3e-17 Score=116.53 Aligned_cols=128 Identities=21% Similarity=0.309 Sum_probs=101.2
Q ss_pred eEEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecCCCCce
Q psy1595 10 TVSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHR 88 (147)
Q Consensus 10 ~~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 88 (147)
...+|.|.. ..+|.|. |.|.|+|..+ ......++.|..+|.+...+ +...+..|+.+.+.|.+.|.|.|.
T Consensus 292 ~~~vL~I~nv~~~D~G~-Y~C~AeN~~G---~~~~~~~v~v~a~P~w~~~~----~d~~~~~gs~v~~eC~a~g~P~p~- 362 (1051)
T KOG3513|consen 292 YGKVLKIPNVQYEDAGE-YECIAENSRG---SATHSGHVTVYAPPYWLQKP----QDTEADTGSNVTLECKASGKPNPT- 362 (1051)
T ss_pred cccEEEecccCcCCCeE-EEEEEecccc---cceeeEEEEEecCchhhccc----ceeEecCCCCeEEEEEecCCCCCc-
Confidence 445677754 5666666 5999999885 34567889999888765432 667788899999999999999998
Q ss_pred EEEEECCeecccccc-ccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 89 LLWFHNDKEIHHNVT-GGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 89 ~~w~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
+.|+++|.++..... .......+.|.|.++...|+|.|+|.|.|..|... ..+.|.|+
T Consensus 363 v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~-anA~L~V~ 421 (1051)
T KOG3513|consen 363 VKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIY-ANAELKVL 421 (1051)
T ss_pred eEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEe-eeeEEEEE
Confidence 999999998875433 22445578999999999999999999999999877 46777763
No 2
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.74 E-value=8.4e-17 Score=85.58 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=65.2
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
....+.+|+.+.|.|.+.|.|.|. +.|++++..+.... .....+..|.|.++..+|+|.|+|.|.|..|... ..+.
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~P~-v~W~k~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~ 84 (88)
T cd05851 9 KDTYALKGQNVTLECFALGNPVPV-IRWRKILEPMPATA--EISMSGAVLKIFNIQPEDEGTYECEAENIKGKDK-HQAR 84 (88)
T ss_pred ccEEEeCCCcEEEEEEecccCCCE-EEEEECCcCCCCCC--EEecCCCEEEECcCChhhCEEEEEEEEcCCCceE-EEEE
Confidence 456678899999999999999997 99999987664321 2233456899999999999999999999999865 6778
Q ss_pred EEEC
Q psy1595 144 LAVK 147 (147)
Q Consensus 144 l~v~ 147 (147)
|.|.
T Consensus 85 l~V~ 88 (88)
T cd05851 85 VYVQ 88 (88)
T ss_pred EEEC
Confidence 8774
No 3
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.73 E-value=8.7e-17 Score=87.32 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=63.5
Q ss_pred CccceecCCcEEEEeEeec-CCCCceEEEEECCeeccccccccEEee-------CCeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 64 NPTDIKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGIILS-------NISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
....+.+|+.+.|.|.+.+ .|+|. +.|+++|.++........... ...|.|..+.++|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~-v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPH-INWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCc-cEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 3456788999999999999 78886 999999998864322211111 25699999999999999999999999
Q ss_pred CCccccEEEEE
Q psy1595 136 RGASQPIILAV 146 (147)
Q Consensus 136 ~~~s~~~~l~v 146 (147)
... ..+.|.|
T Consensus 90 ~~~-~t~~L~V 99 (101)
T cd04975 90 SKS-LTFELYV 99 (101)
T ss_pred cEE-EEEEEEE
Confidence 754 5677766
No 4
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.72 E-value=1.3e-16 Score=85.20 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=66.1
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
....+.+|+.+.|.|.+.+. .|. +.|++++..+... ..........|.|.++.++|.|.|.|.|.|..|...+..+.
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~-i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATY-IWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCE-EEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 45578889999999999998 776 9999999876432 22222234689999999999999999999999998888999
Q ss_pred EEEC
Q psy1595 144 LAVK 147 (147)
Q Consensus 144 l~v~ 147 (147)
|.|.
T Consensus 88 L~V~ 91 (91)
T cd05740 88 LNVN 91 (91)
T ss_pred EEeC
Confidence 9874
No 5
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.72 E-value=2e-16 Score=83.93 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=65.9
Q ss_pred CccceecCCcEEEEeEe-ecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccE
Q psy1595 64 NPTDIKEGDDVYFECQV-SANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPI 142 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~ 142 (147)
....+..|+.+.|.|.+ .+.|.+. +.|++++..+..............|.|.++..+|+|.|+|.+.|..|...+..+
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~-i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPT-VSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCE-EEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence 45567889999999998 6888886 999999987765332222334578999999999999999999999998777777
Q ss_pred EEEE
Q psy1595 143 ILAV 146 (147)
Q Consensus 143 ~l~v 146 (147)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05724 83 RLSV 86 (86)
T ss_pred EEEC
Confidence 7765
No 6
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.72 E-value=8.3e-17 Score=82.99 Aligned_cols=74 Identities=26% Similarity=0.515 Sum_probs=60.6
Q ss_pred cCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+|+.+.|.|.+.|.|.|. +.|++++..+.... .........|.|.++..+|.|.|+|.|.|..|... ..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~-i~W~k~g~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPV-IAWTKGGSQLSVDR-RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQR-TVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCE-EEEEECCEECCCCC-CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCcee-EEEEEeC
Confidence 488999999999999997 99999998765432 22334557899999999999999999999999865 5677765
No 7
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.71 E-value=2.1e-16 Score=81.87 Aligned_cols=75 Identities=24% Similarity=0.369 Sum_probs=60.8
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccc-cEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTG-GIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
|+.+.|.|.+.|.|.|. +.|+++|..+...... +.......|.|.++..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus 1 G~~v~l~C~~~G~P~p~-i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~ 76 (76)
T cd05867 1 GETARLDCQVEGIPTPN-ITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLL-ANAHVHVV 76 (76)
T ss_pred CCeEEEEEEeeEeCCCe-EEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEE-EEEEEEEC
Confidence 67899999999999997 9999999877543221 2334467899999999999999999999999865 56788773
No 8
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.71 E-value=2.3e-16 Score=85.47 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=66.3
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEe--eCCeEEEEeeccCCCeEEEEEEEeCCCCCcccc
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL--SNISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
....+..|+.+.|.|.+.|.|++. +.|+++|..+.......... ....|.|.++.++|+|.|+|.+.|.+|... ..
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~-v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~-~~ 85 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPIT-CTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQ-AQ 85 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCc-eEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCcee-EE
Confidence 566788999999999999999997 99999999886443222221 245799999999999999999999999966 47
Q ss_pred EEEEEC
Q psy1595 142 IILAVK 147 (147)
Q Consensus 142 ~~l~v~ 147 (147)
+.|.|.
T Consensus 86 ~~l~V~ 91 (98)
T cd05762 86 VNLTVV 91 (98)
T ss_pred EEEEEe
Confidence 777763
No 9
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.71 E-value=3.8e-16 Score=83.82 Aligned_cols=81 Identities=22% Similarity=0.438 Sum_probs=63.2
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEee---CCeEEEEeeccCCCeEEEEEEEeCCCCCccc
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS---NISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~ 140 (147)
....+.+|+.+.|.|.+.+.|.|. +.|++++..+........... ...|.|.++..+|+|.|+|.|.|..|... .
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~-v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~ 86 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPE-VSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET-V 86 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCe-EEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce-E
Confidence 345678899999999999999997 999999988765433222212 23699999999999999999999999855 4
Q ss_pred cEEEEE
Q psy1595 141 PIILAV 146 (147)
Q Consensus 141 ~~~l~v 146 (147)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 566654
No 10
>KOG4194|consensus
Probab=99.70 E-value=3.5e-16 Score=105.62 Aligned_cols=128 Identities=17% Similarity=0.309 Sum_probs=100.5
Q ss_pred eEEEEEee-eeecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecCCCCce
Q psy1595 10 TVSYVPFK-PSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHR 88 (147)
Q Consensus 10 ~~s~l~~~-~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 88 (147)
..++|.+. ++..|.|.| .|.+.|..+ ...+..+.++|...|.+.-. +....+..|+.+.+.|.+.|.|.|.
T Consensus 572 ~~~~L~L~nVt~td~grY-QCVvtN~FG--Stysqk~KltV~~~PsFtkt----P~dltl~tg~mArl~CaAtG~P~Pe- 643 (873)
T KOG4194|consen 572 YTAILHLDNVTFTDEGRY-QCVVTNHFG--STYSQKAKLTVNQAPSFTKT----PEDLTLRTGQMARLECAATGHPRPE- 643 (873)
T ss_pred hhheeeeeeeecccCceE-EEEEecccC--cchhheeEEEeeccCccccC----cccceeecccceeeeeeccCCCCcc-
Confidence 45566665 678888885 999999985 56677788888888876432 2677888999999999999999998
Q ss_pred EEEEECCee-cccccc--ccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 89 LLWFHNDKE-IHHNVT--GGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 89 ~~w~~~~~~-~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|-++|.. ++.... .+....+..+.|.+++.+|.|.|+|.|.|.+|... ...+|.|
T Consensus 644 IawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~is-anAtL~V 703 (873)
T KOG4194|consen 644 IAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQIS-ANATLTV 703 (873)
T ss_pred eeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeecccccee-eceEEEE
Confidence 999998876 333222 23445577899999999999999999999999854 5677766
No 11
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=2.2e-16 Score=80.97 Aligned_cols=73 Identities=26% Similarity=0.508 Sum_probs=59.2
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
|+.+.|.|.+.+.|.|. +.|++++..+.... ......+..|.|.++..+|.|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~-v~W~k~~~~l~~~~-r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPK-FSWSKGTELLVNNS-RISIWDDGSLEILNITKLDEGSYTCFAENNRGKAN-STGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCE-EEEEeCCEecccCC-CEEEcCCCEEEECcCChhHCEEEEEEEECCCCcee-EEEEEEC
Confidence 67899999999999987 99999988664332 22334567899999999999999999999999866 4667664
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.70 E-value=5.8e-16 Score=95.46 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=75.3
Q ss_pred EEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeec-----CCC
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSA-----NPR 85 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~ 85 (147)
..|.|.. +.+|.|. |+|.+.+..+ .....+.|.|..++ ....+.+|+.+.|.|.+.+ .|.
T Consensus 98 ~~L~I~~v~~~DsG~-Y~C~a~N~~~---~~~~~i~L~V~~~~----------~~~~~~~G~~v~L~C~~~~~~~~~~p~ 163 (227)
T PHA02826 98 ENLWIGNVINIDEGI-YICTISSGNI---CEESTIRLTFDSGT----------INYQFNSGKDSKLHCYGTDGISSTFKD 163 (227)
T ss_pred CeEEECCCChHHCEE-EEEEEEECCc---ceEEEEEEEEecCC----------ccceEecCCCEEEEeeCCCCccccCCC
Confidence 4577764 6666665 6999999653 23455666664211 2234567999999999753 345
Q ss_pred CceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCC
Q psy1595 86 AHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 86 ~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
|. +.|+++|+++..............|.|.++..+|+|.|+|.+....
T Consensus 164 p~-I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 164 YT-LTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred ce-EEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 76 9999999987644322222234579999999999999999998864
No 13
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.70 E-value=3.1e-16 Score=84.73 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=63.4
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEECCeecccccccc-EEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG-IILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
...+..|+.+.|.|.+.|.|.|. +.|+++|..+....... .......|.|.++..+|.|.|+|.|.|.+|... ..+.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~-v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~ 89 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPT-MTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQE-AEIH 89 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCE-EEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEE-EEEE
Confidence 44678899999999999999997 99999998775431111 112235699999999999999999999999855 5777
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|.|
T Consensus 90 L~V 92 (95)
T cd05730 90 LKV 92 (95)
T ss_pred EEE
Confidence 776
No 14
>KOG3513|consensus
Probab=99.69 E-value=5.5e-16 Score=110.28 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=96.8
Q ss_pred eEEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeC-CceeEEeccCCCccceecCCcEEEEeEeecCCCCc
Q psy1595 10 TVSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFV-PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87 (147)
Q Consensus 10 ~~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~ 87 (147)
..++|+|.. ...|.|- |.|.|+|..+ ..-..+.|.|... |.+...... ....+..|..+.+.|...+.|.+.
T Consensus 384 ~~g~L~is~v~~~dsg~-YQC~A~Nk~G---~i~anA~L~V~a~~P~f~~~p~~--~~~~a~~g~~v~i~C~~~asP~p~ 457 (1051)
T KOG3513|consen 384 DDGTLIISNVQESDSGV-YQCIAENKYG---TIYANAELKVLASAPVFPLNPVE--RKVMAVVGGTVTIDCKPFASPKPK 457 (1051)
T ss_pred eCCEEEEEecccccCeE-EEeeeecccc---eEeeeeEEEEEccCCCCCCCccc--eEEEEEeCCeEEEeeccCCCCcce
Confidence 456788875 4555555 6999999884 2455678888754 554433211 233467799999999999999997
Q ss_pred eEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 88 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
+.|.+.+. ......+..+..+++|.|.++.++|+|.|+|.|.|.+|... ..+.|.|+
T Consensus 458 -~~W~k~~~-~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~-~~~~L~Vk 514 (1051)
T KOG3513|consen 458 -VSWLKGGE-KLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAE-STGNLIVK 514 (1051)
T ss_pred -EEEEcCCc-ccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccc-eEEEEEEe
Confidence 99999988 33334445566789999999999999999999999999977 56777764
No 15
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.69 E-value=3.1e-16 Score=80.69 Aligned_cols=71 Identities=30% Similarity=0.508 Sum_probs=55.3
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEee-CC---eEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS-NI---SLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|++++..+........... +. +|.|.++..+|+|.|+|.|.|.+|... ....|.|
T Consensus 1 v~l~C~v~G~P~P~-i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPK-IFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVAT-CHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCe-EEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEE-EEEEEeC
Confidence 46899999999997 999999988764322222222 21 699999999999999999999999866 4566654
No 16
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.69 E-value=4.8e-16 Score=80.45 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=60.2
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccc-cEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTG-GIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
|+.+.|.|.+.|.|.|. +.|+++|+++...... ........|.|.++..+|.|.|+|.|.|..|... ..+.|.|+
T Consensus 1 g~~~~l~C~a~G~P~P~-i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPS-ISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLL-ANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCe-EEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEE-EEEEEEeC
Confidence 67889999999999997 9999999887533221 1223345789999999999999999999999866 57888874
No 17
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.69 E-value=5.4e-16 Score=83.45 Aligned_cols=75 Identities=25% Similarity=0.476 Sum_probs=60.4
Q ss_pred cCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeec-cCCCeEEEEEEEeCCCCCccccEEEE
Q psy1595 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVS-RQSAGEYSCMAINTEGRGASQPIILA 145 (147)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~ 145 (147)
.|+.+.|.|.+.|.|.|. +.|+++|..+......+....+..|.|.++. .+|.|.|+|.|.|..|...++.+.|.
T Consensus 18 ~g~~v~l~C~~~G~P~P~-i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l~ 93 (94)
T cd05848 18 DEKKVILNCEARGNPVPT-YRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALLQ 93 (94)
T ss_pred CCCEEEEEEEeeecCCCE-EEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEEe
Confidence 478999999999999997 9999999887543333334456788888874 68999999999999998877777664
No 18
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.69 E-value=5.7e-16 Score=81.97 Aligned_cols=80 Identities=18% Similarity=0.342 Sum_probs=63.1
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEECCeecccccc-ccEEe--eCCeEEEEeeccCCCeEEEEEEEeCCCCCcccc
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVT-GGIIL--SNISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
...+..|+.+.|.|.+.|.|.|. +.|++++.++..... ..... ....|.|.++.++|+|.|+|.|.|..|... ..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~-v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~-~~ 81 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPT-VTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDH-AS 81 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCe-EEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEE-EE
Confidence 44578899999999999999997 999999988764322 11111 124699999999999999999999999854 56
Q ss_pred EEEEE
Q psy1595 142 IILAV 146 (147)
Q Consensus 142 ~~l~v 146 (147)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05894 82 LFVKV 86 (86)
T ss_pred EEEEC
Confidence 77765
No 19
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.68 E-value=1.1e-15 Score=82.28 Aligned_cols=83 Identities=19% Similarity=0.454 Sum_probs=60.8
Q ss_pred CccceecCCcEEEEeEeecCCC-CceEEEEE-CCeeccccccccEEee----CCeEEEEeeccCCCeEEEEEEEeCCCCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPR-AHRLLWFH-NDKEIHHNVTGGIILS----NISLVLQKVSRQSAGEYSCMAINTEGRG 137 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~-~~~~~w~~-~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 137 (147)
....+..|+.+.|.|.+.|.|. |. +.|++ ++..+........... ..+|.|.++..+|+|.|+|.|.|.+|..
T Consensus 8 ~~~~v~~G~~v~l~C~v~G~P~~p~-i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~ 86 (96)
T cd05865 8 SQGEISVGESKFFLCQVAGEAKDKD-ISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE 86 (96)
T ss_pred CccEECCCCeEEEEEEEeCCCCCCE-EEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence 3446788999999999999885 56 99998 6765543222211222 2479999999999999999999998443
Q ss_pred ccccEEEEEC
Q psy1595 138 ASQPIILAVK 147 (147)
Q Consensus 138 ~s~~~~l~v~ 147 (147)
....+.|.|.
T Consensus 87 ~~~s~~l~v~ 96 (96)
T cd05865 87 SEATVNVKIF 96 (96)
T ss_pred EEEEEEEEEC
Confidence 4467888763
No 20
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.68 E-value=3.5e-16 Score=80.55 Aligned_cols=71 Identities=27% Similarity=0.461 Sum_probs=55.3
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEeeCC----eEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI----SLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|++++..+............. .|.|.++..+|+|.|+|.|.|.+|... ..+.|.|
T Consensus 1 v~l~C~v~G~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQ-IFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVS-CTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCE-EEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE-EEEEEeC
Confidence 46899999999997 99999998876432222222222 589999999999999999999999865 4677765
No 21
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.67 E-value=9.7e-16 Score=83.30 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=62.7
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEE--------eeCCeEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGII--------LSNISLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
...+..|+.+.|.|.+.|.|+|. +.|+++|.++......... .....|.|.++..+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~-v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQ-IRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCc-eEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 34567789999999999999997 9999999987644321111 11357999999999999999999999988
Q ss_pred CccccEEEEE
Q psy1595 137 GASQPIILAV 146 (147)
Q Consensus 137 ~~s~~~~l~v 146 (147)
.. ..+.|.|
T Consensus 91 ~~-~t~~l~V 99 (101)
T cd05859 91 KS-YTFALQI 99 (101)
T ss_pred EE-EEEEEEE
Confidence 54 5666665
No 22
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.67 E-value=4.8e-16 Score=78.02 Aligned_cols=65 Identities=28% Similarity=0.428 Sum_probs=52.7
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|+++|..+... .....|.|.++..+|+|.|+|.|.|..|... +.+.+++
T Consensus 1 ~~l~c~v~g~P~P~-v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPE-FQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLE-KRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCE-EEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEE-EEEEEEE
Confidence 36899999999997 9999999887532 2346899999999999999999999998643 4555544
No 23
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.67 E-value=3.2e-15 Score=81.47 Aligned_cols=83 Identities=24% Similarity=0.488 Sum_probs=61.2
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeecccc----ccccEEeeCCeEEEEe-----eccCCCeEEEEEEEeCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHN----VTGGIILSNISLVLQK-----VSRQSAGEYSCMAINTE 134 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~l~i~~-----~~~~d~g~y~C~~~n~~ 134 (147)
....+.+|+.+.|.|.+.+.|.|. +.|+++|..+... ........+..+.+.. +..+|+|.|+|.+.|..
T Consensus 9 ~~~~v~~G~~~~l~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~ 87 (100)
T cd07693 9 SDLIVSKGDPATLNCKAEGRPTPT-IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSL 87 (100)
T ss_pred ceeEEcCCCeEEEEeeCCcCCCCE-EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccc
Confidence 456778899999999999999996 9999999877541 1111222233332222 25789999999999999
Q ss_pred CCCccccEEEEEC
Q psy1595 135 GRGASQPIILAVK 147 (147)
Q Consensus 135 g~~~s~~~~l~v~ 147 (147)
|...+..+.|.|.
T Consensus 88 G~~~s~~~~l~v~ 100 (100)
T cd07693 88 GEAVSRNASLEVA 100 (100)
T ss_pred cceecceEEEEeC
Confidence 9977788888873
No 24
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.67 E-value=1.1e-15 Score=79.30 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=60.8
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccc-cEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTG-GIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
|+.+.|.|.+.+.|.|. +.|+++|..+...... ........|.|.++..+|.|.|+|.|.|..|... ..+.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~-i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPT-ITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLL-ANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCE-EEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEE-EeEEEEEC
Confidence 67899999999999997 9999999877543322 2333457899999999999999999999999865 57888774
No 25
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.67 E-value=1.7e-15 Score=81.54 Aligned_cols=74 Identities=30% Similarity=0.455 Sum_probs=59.6
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeec-cCCCeEEEEEEEeCCCCCccccEEEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVS-RQSAGEYSCMAINTEGRGASQPIILA 145 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~ 145 (147)
|+.+.|.|.+.+.|.+. +.|+++|..+......+.......|.|.++. .+|.|.|+|.|.|..|...++.+.|.
T Consensus 19 g~~v~l~C~a~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 19 EEKVTLGCRARASPPAT-YRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CCeEEEEeEceeCCCCE-EEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 56899999999999997 9999999887643333334456788887765 58999999999999999887777764
No 26
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.66 E-value=1.8e-15 Score=80.01 Aligned_cols=79 Identities=29% Similarity=0.482 Sum_probs=65.3
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
....+..|+.+.|.|.+.|.|.|. +.|++++..+.... .....+..|.|.++..+|+|.|+|.|.|..|... ..+.
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~-v~W~k~g~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~ 82 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPA-YRWLKNGQPLASEN--RIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY-ASAE 82 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCE-EEEEECCEECCCCC--eEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEE-EEEE
Confidence 556788899999999999999997 99999998775432 2334567899999999999999999999999855 5677
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|.|
T Consensus 83 l~V 85 (85)
T cd05728 83 LAV 85 (85)
T ss_pred EEC
Confidence 764
No 27
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.66 E-value=1.2e-15 Score=78.62 Aligned_cols=73 Identities=26% Similarity=0.496 Sum_probs=58.5
Q ss_pred EEEEeEeecCCCCceEEEEECCeecccccccc-EEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGG-IILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
+.|.|.+.|.|.|. +.|++++..+......+ ....+..|.|.++..+|+|.|+|.|.|..|...+..+.|.|+
T Consensus 1 a~l~C~~~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPE-ITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCE-EEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 36899999999997 99999998765322222 223456799999999999999999999999977788888874
No 28
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.66 E-value=2.1e-15 Score=80.52 Aligned_cols=80 Identities=18% Similarity=0.500 Sum_probs=61.8
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEEC-CeeccccccccEEeeCC---eEEEEeeccCCCeEEEEEEEeCCCCCcc
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHN-DKEIHHNVTGGIILSNI---SLVLQKVSRQSAGEYSCMAINTEGRGAS 139 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~y~C~~~n~~g~~~s 139 (147)
....+..|+.+.|.|.+.|.|. . +.|+++ +..+....+ .....+. .|.|.++..+|+|.|+|.|.|..|....
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~-~-v~W~k~~g~~~~~~~r-~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 84 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPE-S-IDWYNPQGEKIVSSQR-VVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE 84 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCC-e-EEEEeCCCeEecCCCC-EEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEE
Confidence 4556788999999999999886 5 999984 555443222 2222222 7999999999999999999999998766
Q ss_pred ccEEEEE
Q psy1595 140 QPIILAV 146 (147)
Q Consensus 140 ~~~~l~v 146 (147)
+.+.|.+
T Consensus 85 ~~i~l~~ 91 (92)
T cd05866 85 ATVVLEI 91 (92)
T ss_pred EEEEEEE
Confidence 7788876
No 29
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.66 E-value=3.6e-15 Score=79.43 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=64.4
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
....+.+|+.+.|.|.+.+.|.|. +.|++++........ .......|.|.++..+|+|.|.|.+.|..|... ..+.
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~P~p~-v~W~k~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~ 84 (88)
T cd04968 9 KDTYALKGQNVTLECFALGNPVPQ-IKWRKVDGSMPSSAE--ISMSGAVLKIPNIQFEDEGTYECEAENIKGKDT-HQGR 84 (88)
T ss_pred CceEEeCCCcEEEEEEeeEeCCCE-EEEEECCCcCCCccE--EEEeCCEEEECCCCcccCEEEEEEEEECCCcEE-EEEE
Confidence 455678899999999999999997 999998875543221 224567899999999999999999999999855 5678
Q ss_pred EEEC
Q psy1595 144 LAVK 147 (147)
Q Consensus 144 l~v~ 147 (147)
|.|.
T Consensus 85 l~V~ 88 (88)
T cd04968 85 IYVQ 88 (88)
T ss_pred EEEC
Confidence 7764
No 30
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.65 E-value=1.4e-15 Score=78.23 Aligned_cols=73 Identities=27% Similarity=0.491 Sum_probs=58.8
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
|+.+.|.|.+.+.|.+. +.|++++..+...... .......|.|.++..+|+|.|+|.+.|..|... ..+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~-v~W~k~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPT-ISWSKGTELLTNSSRI-CIWPDGSLEILNVTKSDEGKYTCFAENFFGKAN-STGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCE-EEEEECCEEcccCCCE-EECCCCeEEEccCChhHCEEEEEEEECCCCceE-EEEEEEC
Confidence 67899999999999887 9999999876543222 233456899999999999999999999999865 4666664
No 31
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.65 E-value=3.4e-15 Score=80.61 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=64.4
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccc-cEEeeCCeEEEEee-----ccCCCeEEEEEEEeC-CCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTG-GIILSNISLVLQKV-----SRQSAGEYSCMAINT-EGR 136 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~i~~~-----~~~d~g~y~C~~~n~-~g~ 136 (147)
....+..|+.+.|.|.+.+.|.+. +.|+++|..+...... .....+..+.|.++ .+.|.|.|+|.|.|. .|.
T Consensus 7 ~~~~~~~g~~v~l~C~v~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 7 SDIVAVRGGPVVLNCSAEGEPPPK-IEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred CCeEEcCCCCEEEeeecccCCCCE-EEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 344567799999999999999887 9999999887644321 22334566777776 578999999999999 999
Q ss_pred CccccEEEEE
Q psy1595 137 GASQPIILAV 146 (147)
Q Consensus 137 ~~s~~~~l~v 146 (147)
..++.+.|.|
T Consensus 86 ~~s~~~~l~v 95 (95)
T cd05722 86 IVSRTARLTV 95 (95)
T ss_pred EEEeeeEEeC
Confidence 8888888875
No 32
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.65 E-value=2.9e-15 Score=76.54 Aligned_cols=71 Identities=25% Similarity=0.448 Sum_probs=56.5
Q ss_pred cEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 73 DVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 73 ~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
.+.|.|.+.|.|.|. +.|++++..+..... ........|.|.++..+|.|.|+|.|.|..|... ..+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~-v~W~k~g~~~~~~~~-~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPT-VKWVKNGDMVIPSDY-FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQ-ASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCE-EEEEECCeECCCCCC-EEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEE-EEEEEEC
Confidence 368999999999997 999999987654322 2233456788999999999999999999999865 5677764
No 33
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.65 E-value=2.8e-15 Score=80.17 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=62.6
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEE--eeCCeEEEEeeccCCCeEEEEEEEeCCCCCcccc
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
....+..|+.+.|.|.+.|.|.|. +.|++++..+......... .....|.|.++..+|.|.|+|.|.|..|... ..
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~p~-v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~-~~ 85 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPLPK-VEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN-VS 85 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCCCe-EEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee-EE
Confidence 344578899999999999999997 9999999876432211111 1224699999999999999999999999855 56
Q ss_pred EEEEE
Q psy1595 142 IILAV 146 (147)
Q Consensus 142 ~~l~v 146 (147)
+.|.|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 77764
No 34
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.65 E-value=2.3e-15 Score=77.66 Aligned_cols=71 Identities=30% Similarity=0.489 Sum_probs=54.8
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEeeC----CeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|+++++.+............ ..|.|.++..+|+|.|+|.|.|.+|... ..+.|.|
T Consensus 1 v~L~C~v~G~P~P~-v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQ-IFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVS-CNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCe-EEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEE-EEEEEeC
Confidence 36899999999997 9999999887643222222221 1599999999999999999999999865 4677764
No 35
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.65 E-value=3.8e-15 Score=79.88 Aligned_cols=81 Identities=27% Similarity=0.516 Sum_probs=62.0
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeC---CeEEEEeeccCCCeEEEEEEEeCCCCCccc
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN---ISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~ 140 (147)
....+.+|+.+.|.|.+.+.|.|. +.|++++..+............ ..|.|.++..+|+|.|+|.+.|..|... .
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~-i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~ 86 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPE-VIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET-V 86 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCe-EEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee-e
Confidence 455678899999999999988887 9999999876543322211111 2699999999999999999999999855 4
Q ss_pred cEEEEE
Q psy1595 141 PIILAV 146 (147)
Q Consensus 141 ~~~l~v 146 (147)
.+.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 555543
No 36
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.65 E-value=9.9e-15 Score=94.94 Aligned_cols=124 Identities=16% Similarity=0.226 Sum_probs=78.5
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccc-cccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecCCCC---c
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANS-SMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA---H 87 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~ 87 (147)
+.|.|.....++.+.|+|.+.+..+... .....+.|.|..+..++.... +....+..|+.+.|.|.+.+.|.+ .
T Consensus 177 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~--p~~~~~~~G~~v~L~C~a~g~P~~~~~~ 254 (326)
T PHA02785 177 GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQL--PEGVVTSIGSNLTIACRVSLRPPTTDAD 254 (326)
T ss_pred CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecC--CCcEEecCCCcEEEEEEEECCCCCCCce
Confidence 4687775444455557999998764211 122334555543221111111 145556779999999999987753 5
Q ss_pred eEEEEECCeeccccc---cccEE------------eeCCeEEEEeeccCCCeEEEEEEEeCCCCCc
Q psy1595 88 RLLWFHNDKEIHHNV---TGGII------------LSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138 (147)
Q Consensus 88 ~~~w~~~~~~~~~~~---~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 138 (147)
+.|+++|..+.... ..+.. .....|.|.++..+|.|.|+|.|.|..+...
T Consensus 255 -v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 255 -VFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred -EEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 89999998764321 00100 1124699999999999999999999886544
No 37
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.64 E-value=3.5e-15 Score=77.44 Aligned_cols=72 Identities=24% Similarity=0.472 Sum_probs=55.6
Q ss_pred EEEEeEeecCCCCceEEEEECCeecccccccc-EEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCc-cccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGG-IILSNISLVLQKVSRQSAGEYSCMAINTEGRGA-SQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|+++|.++....... .......|.|.++..+|+|.|.|.|.|..|... +..+.|.|
T Consensus 1 v~L~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPT-YQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCc-EEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 46899999999997 99999998875432221 222345799999999999999999999999753 34577765
No 38
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.64 E-value=4.5e-15 Score=78.91 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=58.0
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccccEEee-------CCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS-------NISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
|+.+.|.|.+.+.|++. +.|++++..+.....+..... ...|.|.++..+|.|.|+|.|.|..|... ..+.
T Consensus 1 g~~~~l~C~~~g~p~~~-i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPII-VRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR-GIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCCE-EEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce-EEEE
Confidence 67899999999998886 999999987643322221111 14699999999999999999999999865 5677
Q ss_pred EEEC
Q psy1595 144 LAVK 147 (147)
Q Consensus 144 l~v~ 147 (147)
|.|.
T Consensus 79 L~V~ 82 (88)
T cd05735 79 LTVQ 82 (88)
T ss_pred EEEe
Confidence 7763
No 39
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.64 E-value=1.5e-15 Score=77.59 Aligned_cols=69 Identities=23% Similarity=0.441 Sum_probs=54.5
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|+++|..+... .+.......|.|.++..+|+|.|+|.|.|..|... ..+.+.|
T Consensus 1 ~~l~c~v~g~P~p~-v~W~k~g~~l~~~--~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPE-IQWYKNGKLISEK--NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLE-KRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCE-EEEEECCEECCCC--CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEE-EEEEEEE
Confidence 36889999999997 9999999987654 23344567899999999999999999999998743 3444443
No 40
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.64 E-value=4.8e-15 Score=79.57 Aligned_cols=79 Identities=22% Similarity=0.468 Sum_probs=61.9
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEee--CCeEEEEeeccCCCeEEEEEEEeCCCCCcccc
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS--NISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
....+..|+.+.|.|.+.+.|.|. +.|++++..+........... ...|.|.++..+|.|.|.|.+.|..|... ..
T Consensus 11 ~~~~~~~G~~~~L~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-~~ 88 (92)
T cd05747 11 RSLTVSEGESARFSCDVDGEPAPT-VTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQE-AQ 88 (92)
T ss_pred ccEEEeCCCcEEEEEEEeecCCCE-EEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEe-EE
Confidence 566788999999999999999997 999999987654332222211 24799999999999999999999999854 44
Q ss_pred EEE
Q psy1595 142 IIL 144 (147)
Q Consensus 142 ~~l 144 (147)
+.|
T Consensus 89 ~~l 91 (92)
T cd05747 89 FTL 91 (92)
T ss_pred EEe
Confidence 444
No 41
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.64 E-value=2.5e-15 Score=79.52 Aligned_cols=78 Identities=26% Similarity=0.505 Sum_probs=60.8
Q ss_pred ceecCCcEEEEeEeecCCCCceEEEEECCeecccccccc---EEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG---IILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
.+..|+.+.|.|.+.+.|.|. +.|+++|..+....... .......|.|.++..+|+|.|+|.+.|..|... ..+.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~ 82 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HTYH 82 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCE-EEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEE-EEEE
Confidence 466799999999999998887 99999998876432211 111234688999999999999999999999855 5677
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 765
No 42
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.62 E-value=3e-15 Score=78.69 Aligned_cols=78 Identities=23% Similarity=0.465 Sum_probs=59.4
Q ss_pred ceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
....|+.+.|.|.+.+.|.|. +.|++++..+..............|.|.++..+|+|.|+|.+.|..|... ..+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~-i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPD-ITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN-ATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCc-EEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEE-EEEEEeC
Confidence 345699999999999999887 99999998765432211112235799999999999999999999999744 5566654
No 43
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.62 E-value=7.8e-15 Score=75.61 Aligned_cols=73 Identities=19% Similarity=0.509 Sum_probs=56.6
Q ss_pred CCcEEEEeEeecCCCCceEEEEE-CCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFH-NDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
|+.+.|.|.+.+.|.|. +.|++ ++..+... ..........|.|..+..+|.|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~-v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPA-IHWISPDGKLISNS-SRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEAT-ATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCE-EEEEeCCCEEecCC-CeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEE-EEEEEEC
Confidence 67899999999999887 99997 55544332 222334467899999999999999999999999854 5677764
No 44
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.62 E-value=4.1e-15 Score=75.99 Aligned_cols=70 Identities=27% Similarity=0.452 Sum_probs=55.9
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|++++..+... ..........|.|.++..+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~-v~W~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPE-VHWDRIDGPLSPN-RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR-HHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCe-EEEEECCcCCCCC-ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEE-EEEEEEE
Confidence 36889999999997 9999998766432 122233457899999999999999999999999855 5777776
No 45
>KOG4194|consensus
Probab=99.62 E-value=6.5e-15 Score=99.65 Aligned_cols=122 Identities=24% Similarity=0.319 Sum_probs=96.2
Q ss_pred EEeeeeecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecCCC-CceEEEE
Q psy1595 14 VPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPR-AHRLLWF 92 (147)
Q Consensus 14 l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~w~ 92 (147)
++.++..+|.|.| +|.|.+..+ ..+..++|.|...|.+...+ ....+..|+...+.|.+.+.|+ |. +.|+
T Consensus 672 ~Itnvk~eD~GiY-tC~A~n~AG---~isanAtL~V~e~p~f~~PL----~~~~V~~get~vlqC~a~~~~a~pr-~~W~ 742 (873)
T KOG4194|consen 672 FITNVKIEDQGIY-TCTAQNVAG---QISANATLTVLETPSFSIPL----EDQLVVVGETLVLQCLAEGAPADPR-LEWF 742 (873)
T ss_pred EEeccccccccee-EEeeecccc---ceeeceEEEEecCCcccccc----cceEEEecceEEEEEecCCCCCCcc-cccc
Confidence 4445677777775 999999884 45778899998888665443 6678889999999999998877 87 9999
Q ss_pred ECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEE
Q psy1595 93 HNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145 (147)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 145 (147)
++.+++....+.++...+..|++.+...+|+|.|+|.+.|..|... ..+.+.
T Consensus 743 k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~-~~i~l~ 794 (873)
T KOG4194|consen 743 KEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTER-IHICLL 794 (873)
T ss_pred CCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeecccee-eEEEEE
Confidence 9999887765555555566788999999999999999999988755 444443
No 46
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.61 E-value=6.7e-15 Score=74.67 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=52.8
Q ss_pred EEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCc-cccEEEE
Q psy1595 75 YFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGA-SQPIILA 145 (147)
Q Consensus 75 ~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-s~~~~l~ 145 (147)
.+.|.+.|.|.|. +.|+++|+++.... .......|.|.++..+|+|.|+|.|.|..|... ...+.|.
T Consensus 2 ~~~c~v~G~P~P~-v~W~k~g~~l~~~~---~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 2 KIPVKYYGYPPPE-VKWYKNGQLIVLNH---TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EEEeEEEEeCCCE-EEEEECCEECCCCC---EEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 6789999999997 99999999876432 123456799999999999999999999998643 2334443
No 47
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.61 E-value=1.3e-14 Score=74.82 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=55.5
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEe--eCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL--SNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|+++|..+.......... ....|.|.++..+|+|.|+|.|.|..|... ..+.|.|
T Consensus 2 ~~l~c~~~G~P~p~-v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPT-VTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS-ATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCe-EEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEE-EEEEEEC
Confidence 67899999999997 99999998874433222221 134699999999999999999999999854 5677664
No 48
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.60 E-value=1.5e-14 Score=75.37 Aligned_cols=78 Identities=13% Similarity=0.345 Sum_probs=60.0
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
....+.+|+.+.|.|.+.+. .+. +.|+++|.++..... .......|.|.++..+|+|.|+|.+.|..|... ..+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~-v~W~k~g~~l~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~-~~~~ 76 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQS-INWTKDGVQLGENNR--TRITGEEVQIKDAVPRDSGLYACVTSSPSGSDT-TYFS 76 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-Cce-EEEeeCCcCCCCCce--EEEeCCEEEECCCChhhCEEEEEEEeCCCCccc-EEEE
Confidence 34567789999999999886 455 999999988765332 223456899999999999999999999988754 3455
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|.|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 543
No 49
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.60 E-value=2.1e-14 Score=77.01 Aligned_cols=81 Identities=22% Similarity=0.546 Sum_probs=58.9
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEE-CCeeccccccccEEee---CCeEEEEeeccCCCeEEEEEEEeCCCCCcc
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFH-NDKEIHHNVTGGIILS---NISLVLQKVSRQSAGEYSCMAINTEGRGAS 139 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s 139 (147)
....+..|+.+.|.|.+.|.|+ . +.|++ ++..+........... ...|.|.++..+|+|.|+|.|.|..|....
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p~-~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~ 85 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEPK-D-ISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE 85 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeCC-e-EEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence 4456788999999999999864 5 99997 5554433222111111 137999999999999999999999766555
Q ss_pred ccEEEEE
Q psy1595 140 QPIILAV 146 (147)
Q Consensus 140 ~~~~l~v 146 (147)
..+.|.|
T Consensus 86 ~sv~l~~ 92 (92)
T cd04977 86 ATVNLKI 92 (92)
T ss_pred eEEEEEC
Confidence 6777764
No 50
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.60 E-value=1.2e-14 Score=75.79 Aligned_cols=74 Identities=18% Similarity=0.359 Sum_probs=58.3
Q ss_pred CccceecCCcEEEEeEeecCCCC-ceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRA-HRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPI 142 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~ 142 (147)
....+..|+.+.|.|.+.|.|.| . +.|+++|.++.... ......|.|..+ .|.|.|.|.|.|..|...++.+
T Consensus 6 ~~~~v~~G~~v~l~C~a~G~P~P~~-I~W~k~g~~l~~~~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 6 EDLSVTANTPFNLTCQAVGPPEPVE-ILWWQGGSPLGDPP----APSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred CceEEcCCCCEEEEEEeeeecCCeE-EEEEECCEECCCCC----CCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence 45677889999999999999988 6 99999998775311 123456888776 4789999999999998776666
Q ss_pred EE
Q psy1595 143 IL 144 (147)
Q Consensus 143 ~l 144 (147)
.|
T Consensus 79 ~~ 80 (81)
T cd05749 79 TV 80 (81)
T ss_pred Ee
Confidence 55
No 51
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.60 E-value=1.5e-14 Score=77.38 Aligned_cols=74 Identities=23% Similarity=0.446 Sum_probs=57.0
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccc-------cccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHH-------NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
|+.+.|.|.+.+.|.|. +.|++++..... ............|.|.++..+|+|.|+|.+.|..|... ..+.
T Consensus 1 G~~v~L~C~~~g~P~p~-v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQPA-IFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSIL-TKAY 78 (90)
T ss_pred CCEEEEEEECCccCCCE-EEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceE-EEEE
Confidence 67899999999999987 999998764311 11112223356799999999999999999999999865 5677
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|.|
T Consensus 79 l~V 81 (90)
T cd05726 79 LEV 81 (90)
T ss_pred EEE
Confidence 776
No 52
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.60 E-value=1e-14 Score=75.85 Aligned_cols=69 Identities=26% Similarity=0.417 Sum_probs=53.5
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccccEEee--CCeEEEEeeccCCCeEEEEEEEeCCCCCccc
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS--NISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~ 140 (147)
|+.+.|.|.+.+.|.|. +.|++++..+........... ...|.|.++..+|.|.|.|.+.|..|...+.
T Consensus 1 G~~v~l~C~~~g~P~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATGVPTPI-INWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEEEEecCCE-EEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 67899999999999997 999999876654322111122 2469999999999999999999999876543
No 53
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.60 E-value=1.2e-14 Score=75.09 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=54.5
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccc-cc--cEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNV-TG--GIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~-~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
+.|.|.+.|.|.|. +.|++++....... .. ........|.|.++..+|+|.|.|.|.|..|... ..+.|.|+
T Consensus 1 a~l~C~~~G~P~P~-v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-~~~~l~V~ 75 (75)
T cd05763 1 ARLECAATGHPTPQ-IAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSIS-ANATLTVL 75 (75)
T ss_pred CEeEeecccccCCE-EEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEE-eeEEEEEC
Confidence 36899999999997 99999986432211 11 1222346799999999999999999999999854 57888774
No 54
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=1.5e-14 Score=77.56 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=58.7
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeec-cCCCeEEEEEEEeCCCCCccccEEEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVS-RQSAGEYSCMAINTEGRGASQPIILA 145 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~~~l~ 145 (147)
+..+.|.|.+.|.|.|. +.|++++..+..... +....+..|.|.++. .+|+|.|+|.|.|..|...++.+.|.
T Consensus 19 ~~~v~l~C~a~G~P~P~-i~W~k~~~~i~~~~~-~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 19 EGKVSVNCRARANPFPI-YKWRKNNLDIDLTND-RYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CCeEEEeCcCccCCCCE-EEEEECCEEccCCCC-eEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 45799999999999997 999999987643222 333456789998875 58999999999999999887777764
No 55
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.59 E-value=4.2e-14 Score=75.56 Aligned_cols=75 Identities=29% Similarity=0.513 Sum_probs=55.4
Q ss_pred CCcEEEEeEeecCCCCceEEEEECC----eeccccccc--cEE---------eeCCeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHND----KEIHHNVTG--GII---------LSNISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~----~~~~~~~~~--~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
|+.+.|.|.+.+.|.|. +.|++++ ..+...... ... .....|.|.++..+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~-i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCe-EEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 57899999999999998 9999964 222111000 000 1124689999999999999999999999
Q ss_pred CCccccEEEEEC
Q psy1595 136 RGASQPIILAVK 147 (147)
Q Consensus 136 ~~~s~~~~l~v~ 147 (147)
... ..+.|.|.
T Consensus 80 ~~~-~sa~L~V~ 90 (90)
T cd04974 80 PSH-HSAWLTVL 90 (90)
T ss_pred ccc-CCEEEEeC
Confidence 865 57888874
No 56
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.59 E-value=7.7e-14 Score=75.58 Aligned_cols=80 Identities=30% Similarity=0.528 Sum_probs=59.8
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEECCeecccccc---ccEE-ee---CCeEEEEeeccCCCeEEEEEEEeCCCCC
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVT---GGII-LS---NISLVLQKVSRQSAGEYSCMAINTEGRG 137 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~-~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 137 (147)
......|+.+.|.|.+.|.|.|. +.|++++..+..... .+.. .. ...|.|.++..+|.|.|+|.|.|..|..
T Consensus 11 ~~~~~~g~~v~l~C~~~G~P~P~-v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 89 (97)
T cd05869 11 QTAMELEEQITLTCEASGDPIPS-ITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQD 89 (97)
T ss_pred ceEEEcCCCEEEEEEeeEeCCCE-EEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCe
Confidence 33455689999999999999997 999998876532211 1111 11 1469999999999999999999999986
Q ss_pred ccccEEEEE
Q psy1595 138 ASQPIILAV 146 (147)
Q Consensus 138 ~s~~~~l~v 146 (147)
. ..+.|.|
T Consensus 90 ~-~~~~l~v 97 (97)
T cd05869 90 S-QSMYLEV 97 (97)
T ss_pred e-EEEEEEC
Confidence 5 5777765
No 57
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.58 E-value=3.8e-14 Score=75.79 Aligned_cols=81 Identities=32% Similarity=0.641 Sum_probs=65.1
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEee--CCeEEEEeeccCCCeEEEEEEEeCCCCCcccc
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS--NISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
....+..|+.+.|.|.+.+.|.+. +.|++++..+........... ...|.|.++..+|.|.|+|.+.|..|... ..
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~-~~ 85 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPT-VTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEAT-AS 85 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSE-EEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEE-EE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCc-ccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEE-EE
Confidence 566788999999999999988886 999999988776433332222 35799999999999999999999988755 56
Q ss_pred EEEEE
Q psy1595 142 IILAV 146 (147)
Q Consensus 142 ~~l~v 146 (147)
+.|.|
T Consensus 86 ~~l~V 90 (90)
T PF07679_consen 86 VNLTV 90 (90)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 77765
No 58
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.58 E-value=2.2e-14 Score=74.42 Aligned_cols=70 Identities=24% Similarity=0.471 Sum_probs=53.6
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEE--eeCCeEEEEeecc----CCCeEEEEEEEeCCCCCccccEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVLQKVSR----QSAGEYSCMAINTEGRGASQPIIL 144 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~s~~~~l 144 (147)
+.|.|.+.|.|.|. +.|++++..+......... .....|.|.++.. +|+|.|+|.|.|..|...++.+.|
T Consensus 1 i~l~C~~~G~P~P~-v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPT-FSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCe-EEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 36889999999997 9999999877543222222 2356888888753 689999999999999887776665
No 59
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.58 E-value=1.6e-14 Score=73.41 Aligned_cols=69 Identities=32% Similarity=0.574 Sum_probs=54.3
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|+|. +.|++++..+... .........|.|.++..+|+|.|+|.+.|..|... ..+.|.|
T Consensus 1 v~l~C~~~g~P~p~-v~W~k~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPT-VLWRKEDGELPKG--RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE-ASASLTV 69 (69)
T ss_pred CEEEEECccCCCCE-EEEEECCccCCCC--cEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEE-EEEEEEC
Confidence 36899999999997 9999997655322 22233567899999999999999999999999855 5667664
No 60
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.58 E-value=1.3e-14 Score=73.83 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=52.9
Q ss_pred EEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCC-CCCccccEEEEE
Q psy1595 75 YFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE-GRGASQPIILAV 146 (147)
Q Consensus 75 ~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~s~~~~l~v 146 (147)
.|.|.+.|.|+|. +.|++++.++..... .......+|.|.++..+|+|.|+|.+.|.. +......+.|.|
T Consensus 2 ~l~c~v~g~P~P~-v~W~kdg~~l~~~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~~ 72 (72)
T cd07702 2 RLTPKVKAFPAPE-VIWLKDGLPAAEKCS-RYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLIV 72 (72)
T ss_pred eEEeeEEEcCCCe-EEEEECCEECCCCCc-EEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEEC
Confidence 5889999999998 999999988754322 222344589999999999999999999986 443434455543
No 61
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.58 E-value=2.4e-14 Score=74.69 Aligned_cols=72 Identities=29% Similarity=0.490 Sum_probs=54.8
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccc-------cccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHH-------NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|++++..... .........+.+|.|.++..+|+|.|.|.|.|..|...++.+.|.|
T Consensus 1 v~l~C~~~G~P~P~-v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPT-IVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCE-EEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 46899999999997 999996432211 1111122345789999999999999999999999988778888875
No 62
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.57 E-value=1.1e-14 Score=73.96 Aligned_cols=68 Identities=22% Similarity=0.427 Sum_probs=53.6
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 144 (147)
+.|.|.+.|.|.|. +.|++++..+.... .........|.|.++..+|.|.|+|.|.|..|... ..+.|
T Consensus 1 v~L~C~~~g~P~p~-i~W~k~g~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPT-ITWNKDGVQVTESG-KFHISPEGYLAIRDVGVADQGRYECVARNTIGYAS-VSMVL 68 (69)
T ss_pred CEeEecceEeCCCE-EEEEECCEECCCCC-CEEECCCCEEEECcCChhhCEEEEEEEECCCCcEE-EEEEe
Confidence 46899999999997 99999998765432 22233467899999999999999999999999854 44544
No 63
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.57 E-value=3.1e-14 Score=73.76 Aligned_cols=70 Identities=20% Similarity=0.446 Sum_probs=52.4
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccE--EeeCCeEEEEeeccC----CCeEEEEEEEeCCCCCccccEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI--ILSNISLVLQKVSRQ----SAGEYSCMAINTEGRGASQPIIL 144 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~----d~g~y~C~~~n~~g~~~s~~~~l 144 (147)
+.|.|.+.|.|.|. +.|++++..+........ ...+++|.|..+..+ |.|.|+|.|.|..|...++.+.|
T Consensus 1 ~~l~C~a~G~P~P~-i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPS-FSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCe-EEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 36899999999997 999999987643322222 223567888877643 68999999999999877766655
No 64
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.57 E-value=6.8e-14 Score=75.93 Aligned_cols=81 Identities=19% Similarity=0.375 Sum_probs=60.5
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEEC--Ceecccc---ccccEE-e---eCCeEEEEeeccCCCeEEEEEEEeCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHN--DKEIHHN---VTGGII-L---SNISLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~--~~~~~~~---~~~~~~-~---~~~~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
....+.+|+.+.|.|.+.|.|.|. +.|+++ +..+... ...+.. . ....|.|.++..+|+|.|.|.|.|..
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~-i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPE-ITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCe-EEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 456788899999999999999997 999994 3332211 011111 1 12479999999999999999999999
Q ss_pred CCCccccEEEEE
Q psy1595 135 GRGASQPIILAV 146 (147)
Q Consensus 135 g~~~s~~~~l~v 146 (147)
|... ..+.|.|
T Consensus 88 G~~~-~~~~l~~ 98 (98)
T cd05870 88 GGHQ-KSMYLDI 98 (98)
T ss_pred Ccce-eEEEEeC
Confidence 9855 5777765
No 65
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.57 E-value=4e-14 Score=75.84 Aligned_cols=72 Identities=26% Similarity=0.478 Sum_probs=56.0
Q ss_pred cCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeecc-CCCeEEEEEEEeCCCCCccccE
Q psy1595 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR-QSAGEYSCMAINTEGRGASQPI 142 (147)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~~s~~~ 142 (147)
.+..+.|.|.+.+.|.+. +.|++++..+...........+..|.|.++.. +|.|.|+|.|.|..|...++.+
T Consensus 18 ~~~~~~l~C~~~g~p~p~-i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~~ 90 (91)
T cd04967 18 DEGKVSLNCRARGSPPPT-YRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSREA 90 (91)
T ss_pred CCCEEEEEEeeeEcCCCE-EEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEeccc
Confidence 346799999999999887 99999998774332333444567888988764 8999999999999998766543
No 66
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.57 E-value=6e-14 Score=74.97 Aligned_cols=75 Identities=27% Similarity=0.478 Sum_probs=55.1
Q ss_pred CCcEEEEeEeecCCCCceEEEEEC----Ceecccccc--ccEEee---------CCeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHN----DKEIHHNVT--GGIILS---------NISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~----~~~~~~~~~--~~~~~~---------~~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
|+.+.|.|.+.+.|.|. +.|+++ +..+..... ...... ...|.|.++..+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~-i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPH-IQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCE-EEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 67899999999999997 999984 332221110 000000 14699999999999999999999999
Q ss_pred CCccccEEEEEC
Q psy1595 136 RGASQPIILAVK 147 (147)
Q Consensus 136 ~~~s~~~~l~v~ 147 (147)
... ..+.|.|+
T Consensus 80 ~~~-~~a~L~V~ 90 (90)
T cd05858 80 ISH-HSAWLTVL 90 (90)
T ss_pred ccc-ceEEEEEC
Confidence 865 67888874
No 67
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.57 E-value=3.9e-14 Score=74.76 Aligned_cols=74 Identities=22% Similarity=0.411 Sum_probs=55.9
Q ss_pred CcEEEEeEeecCCCCc-eEEEEECCeeccccc-cccE--E---eeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEE
Q psy1595 72 DDVYFECQVSANPRAH-RLLWFHNDKEIHHNV-TGGI--I---LSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144 (147)
Q Consensus 72 ~~~~l~C~~~~~~~~~-~~~w~~~~~~~~~~~-~~~~--~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 144 (147)
+.+.|.|.+.+.|.|. .+.|+++++.+.... ..+. . .....|.|.++...|+|.|+|.|.|.+|... ..+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~-~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS-ASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE-EEEEE
Confidence 4678999999988763 379999998775321 1111 1 1235799999999999999999999999865 57777
Q ss_pred EE
Q psy1595 145 AV 146 (147)
Q Consensus 145 ~v 146 (147)
.|
T Consensus 80 ~V 81 (85)
T cd05854 80 VV 81 (85)
T ss_pred EE
Confidence 76
No 68
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.57 E-value=5.7e-14 Score=73.35 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=52.1
Q ss_pred EEeEeecCCCCceEEEEECCeeccccccccEE---------eeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEE
Q psy1595 76 FECQVSANPRAHRLLWFHNDKEIHHNVTGGII---------LSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145 (147)
Q Consensus 76 l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 145 (147)
+.|.+.|.|.|. +.|+++|..+......... .....|.|.++..+|+|.|+|.|.|..|... ..+.+.
T Consensus 3 i~~~v~G~P~P~-v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPT-LTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDS-KSISAH 79 (81)
T ss_pred EEEEeEeeCCCc-EEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCee-eEEEee
Confidence 578999999998 9999999988654321111 1123599999999999999999999999865 456554
No 69
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.56 E-value=7e-14 Score=72.47 Aligned_cols=71 Identities=27% Similarity=0.514 Sum_probs=57.0
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
....+.+|+.+.|.|.+.+.|.+..+.|+++|..+. .....|.|.++ .+|+|.|+|.|.|. ..|.++.
T Consensus 8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~--------~~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~ 75 (78)
T cd05752 8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE--------TTTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVH 75 (78)
T ss_pred CCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee--------ccCCeEEEeec-ccCCEEeEEECCCC---cCCCCEE
Confidence 455778899999999999877543389999998752 23467899999 99999999999875 5677888
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|.|
T Consensus 76 l~V 78 (78)
T cd05752 76 LEV 78 (78)
T ss_pred EeC
Confidence 876
No 70
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.56 E-value=6.3e-14 Score=72.49 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=52.8
Q ss_pred EEeEeecCCCCceEEEEECCeeccccccccE--E-----eeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 76 FECQVSANPRAHRLLWFHNDKEIHHNVTGGI--I-----LSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 76 l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~-----~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.+.|.|.|. +.|+++|..+........ . .....|.|..+..+|+|.|+|.|.|..|... ..+.+..
T Consensus 3 i~~~v~G~P~Pt-i~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~-~~~~~~f 78 (79)
T cd05855 3 IPFTVKGNPKPT-LQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDE-KNVSAHF 78 (79)
T ss_pred EEEEEeEeCCCc-eEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccc-eEEEeec
Confidence 568899999998 999999998864432110 0 1124699999999999999999999999865 5666653
No 71
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.56 E-value=1.4e-13 Score=74.49 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=61.4
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeecccccc---ccE-Ee---eCCeEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVT---GGI-IL---SNISLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~---~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
....+.+|+.+.|.|.+.+.|.|. +.|++++..+..... .+. .. ....|.|.++..+|.|.|.|.|.|..|.
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 87 (96)
T cd05732 9 ENQTAVELEQITLTCEAEGDPIPE-ITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG 87 (96)
T ss_pred CceeEecCCcEEEEEEEeEcCCCc-EEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence 455678899999999999999887 999998865432110 111 11 1247999999999999999999999998
Q ss_pred CccccEEEEE
Q psy1595 137 GASQPIILAV 146 (147)
Q Consensus 137 ~~s~~~~l~v 146 (147)
.. ..+.|.|
T Consensus 88 ~~-~s~~l~v 96 (96)
T cd05732 88 DQ-QSMYLEV 96 (96)
T ss_pred cE-EEEEEeC
Confidence 64 6777764
No 72
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.56 E-value=3e-14 Score=72.81 Aligned_cols=71 Identities=25% Similarity=0.465 Sum_probs=55.0
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
+.|.|.+.|.|.|. +.|++++..+... ..........|.|.++..+|.|.|+|.|.|..|... ..+.|.|.
T Consensus 1 v~l~C~~~g~P~p~-v~W~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPE-ISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR-HTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCe-EEEEECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEE-EEEEEEEC
Confidence 36899999999997 9999998765432 111222346799999999999999999999999854 67777763
No 73
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=4.2e-14 Score=74.82 Aligned_cols=74 Identities=24% Similarity=0.417 Sum_probs=55.4
Q ss_pred CcEEEEeEeecCCCCc-eEEEEECCeecccccc-c-----cEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEE
Q psy1595 72 DDVYFECQVSANPRAH-RLLWFHNDKEIHHNVT-G-----GIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144 (147)
Q Consensus 72 ~~~~l~C~~~~~~~~~-~~~w~~~~~~~~~~~~-~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 144 (147)
+.+.|.|.+.+.|.+. .+.|+++|..+..... . ........|.|.++...|+|.|+|.|.|.+|... ..+.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS-ASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE-EEEEE
Confidence 4678999999988763 2689999987653211 1 1112346799999999999999999999998754 56777
Q ss_pred EE
Q psy1595 145 AV 146 (147)
Q Consensus 145 ~v 146 (147)
.|
T Consensus 80 ~V 81 (85)
T cd04970 80 IV 81 (85)
T ss_pred EE
Confidence 76
No 74
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.55 E-value=4.1e-14 Score=73.31 Aligned_cols=70 Identities=27% Similarity=0.458 Sum_probs=52.0
Q ss_pred EEEEeEeecCCCCceEEEEECCeecccccccc--EEeeCCeEEEEeec----cCCCeEEEEEEEeCCCCCccccEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGG--IILSNISLVLQKVS----RQSAGEYSCMAINTEGRGASQPIIL 144 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~~~l~i~~~~----~~d~g~y~C~~~n~~g~~~s~~~~l 144 (147)
+.|.|.+.|.|.|. +.|++++..+......+ ....+..|.|..+. .+|.|.|+|.|.|..|...++.+.|
T Consensus 1 ~~l~C~~~G~P~P~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPT-FQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCE-EEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 36899999999997 99999998653322222 22345678888764 2468999999999999887776655
No 75
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.55 E-value=8.5e-14 Score=76.86 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=57.4
Q ss_pred cCCcEEEEeEeecCCCCceEEEEECCeeccccccccE-E------eeCCeEEEEeec-cCCCeEEEEEEEeCCCCCcccc
Q psy1595 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI-I------LSNISLVLQKVS-RQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~------~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
.|..+.|.|.+.|.|.+. +.|+++|..+........ . .....|.|.++. .+|.|.|+|.|.|..|... ..
T Consensus 22 ~g~~v~L~C~a~G~P~p~-i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~-~~ 99 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQ-FRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDS-LD 99 (109)
T ss_pred CCCEEEEEEECcccCCCE-EEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCc-EE
Confidence 467899999999999987 999999987753221111 1 012468898886 5899999999999999865 67
Q ss_pred EEEEE
Q psy1595 142 IILAV 146 (147)
Q Consensus 142 ~~l~v 146 (147)
+.|.|
T Consensus 100 i~L~~ 104 (109)
T cd05773 100 IQLVS 104 (109)
T ss_pred EEEEe
Confidence 88776
No 76
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.54 E-value=7.3e-14 Score=73.25 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=55.2
Q ss_pred CcEEEEeEeecC--CCCceEEEEECCeecccc-ccccEEe-----eCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 72 DDVYFECQVSAN--PRAHRLLWFHNDKEIHHN-VTGGIIL-----SNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 72 ~~~~l~C~~~~~--~~~~~~~w~~~~~~~~~~-~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
+.+.|.|.+.+. +++. +.|+++|+.+... ...+... ..+.|.|.++..+|+|.|+|.|.|.++... ....
T Consensus 1 ~~~~l~C~v~~d~~l~~~-~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~-a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIV-FTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS-AAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcE-EEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceE-EEEE
Confidence 367899999763 4565 9999999988632 1112222 345799999999999999999999998854 5677
Q ss_pred EEEC
Q psy1595 144 LAVK 147 (147)
Q Consensus 144 l~v~ 147 (147)
|.|+
T Consensus 79 L~V~ 82 (85)
T cd05853 79 LIVR 82 (85)
T ss_pred EEEe
Confidence 7763
No 77
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.54 E-value=1.1e-13 Score=70.15 Aligned_cols=68 Identities=19% Similarity=0.410 Sum_probs=51.1
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l 144 (147)
|+.+.|.|.+.|.|.|. +.|++++..+.... ........|.|.++ .|+|.|+|.|.|..|... ..+.|
T Consensus 1 G~~v~L~C~a~G~P~P~-v~W~k~g~~l~~~~--~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~-~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPY-VKWMKGGEELTKED--EMPVGRNVLELTNI--YESANYTCVAISSLGMIE-ATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCE-EEEEECCEECCCcc--ceecCccEEEEecc--ccCeeEEEEEEeCCCEEE-EEEEE
Confidence 57899999999999997 99999998764322 12223346888876 478999999999999854 34444
No 78
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.54 E-value=1.6e-13 Score=71.02 Aligned_cols=71 Identities=23% Similarity=0.470 Sum_probs=55.3
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEE-e-eCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGII-L-SNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.|.|.|. +.|+++++.+......+.. . ....|.|.++..+|.|.|+|.+.|..|... ..+.|.|
T Consensus 1 ~~L~C~v~g~P~p~-v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLPR-LTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE-DISSLFV 73 (76)
T ss_pred CEeEeEeeecCCCE-EEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcc-eEEEEEE
Confidence 36889999999997 9999999877643322222 2 234699999999999999999999999865 5677766
No 79
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.54 E-value=6.2e-14 Score=75.29 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=60.6
Q ss_pred ccceecCCcEEEEeEeec-----CCCCceEEEEECCeecccc--ccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCC
Q psy1595 65 PTDIKEGDDVYFECQVSA-----NPRAHRLLWFHNDKEIHHN--VTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRG 137 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~-----~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 137 (147)
...+.+|+.+.|.|.+.+ .|.+. +.|++++..+... ...+....+..|.|..+..+|+|.|+|.+.|..|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~-v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLN-LTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCce-EEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 345678999999999988 57776 9999998764321 112233345789999999999999999999998875
Q ss_pred ccccEEEEE
Q psy1595 138 ASQPIILAV 146 (147)
Q Consensus 138 ~s~~~~l~v 146 (147)
. ..+.|.|
T Consensus 87 ~-~~~~L~v 94 (94)
T cd05756 87 K-VSISLTV 94 (94)
T ss_pred E-EEEEEEC
Confidence 5 4677765
No 80
>KOG4221|consensus
Probab=99.54 E-value=3.9e-13 Score=96.73 Aligned_cols=121 Identities=22% Similarity=0.391 Sum_probs=87.1
Q ss_pred EEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEEEeCCcee--EEeccCCCccceecCCcEEEEeEeecCCCCce
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVV--IHFGSSLNPTDIKEGDDVYFECQVSANPRAHR 88 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 88 (147)
.+.|.|......+.+.|.|.+.+... ...+..+.|.|...|... +.....+....+..|+.+.|.|.+.+.|.|.
T Consensus 192 sG~L~I~~~qp~d~g~yrc~vt~g~~--~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~- 268 (1381)
T KOG4221|consen 192 SGALEISGLQPSDTGEYRCVVTGGAS--QRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPS- 268 (1381)
T ss_pred CCcEEecccccCCCceEEEEEecCCc--CCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCc-
Confidence 45577765444444446999998764 334667788887444222 1212233566788999999999999999998
Q ss_pred EEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCC
Q psy1595 89 LLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 89 ~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
+.|+++|..+..............|.|.++...|+|.|+|.|.|..
T Consensus 269 v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~ 314 (1381)
T KOG4221|consen 269 VKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTN 314 (1381)
T ss_pred eEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCC
Confidence 9999999888765422233335679999999999999999999954
No 81
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.54 E-value=1.1e-13 Score=72.74 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=60.4
Q ss_pred ccceecCCcEEEEeEeec-CCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 65 PTDIKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
...+.+|+.+.|.|.+.. .+... +.|+++|..+.. ......|.|.++..+|+|.|+|.+.+..+...|+.+.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~-~~w~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~ 80 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYK-VTYYRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVS 80 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceE-EEEEECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEE
Confidence 346788999999999864 44454 999999976542 1234579999999999999999999999988888888
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|+|
T Consensus 81 i~~ 83 (83)
T cd05753 81 ITV 83 (83)
T ss_pred EEC
Confidence 876
No 82
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.52 E-value=1.9e-13 Score=72.90 Aligned_cols=80 Identities=20% Similarity=0.456 Sum_probs=60.9
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEECCeeccccc--cccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccE
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNV--TGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPI 142 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~ 142 (147)
...+..|+.+.|.|...+ |.+. +.|++++..+.... ..+.......|.|.++..+|+|.|.|.+.+..+...+..+
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~-i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 82 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLAS-VVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY 82 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCce-EEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence 445678999999999877 6665 99999988765432 1223334456999999999999999999988766566667
Q ss_pred EEEE
Q psy1595 143 ILAV 146 (147)
Q Consensus 143 ~l~v 146 (147)
.|.|
T Consensus 83 ~l~V 86 (89)
T cd04979 83 SLNV 86 (89)
T ss_pred EEEE
Confidence 7776
No 83
>KOG4221|consensus
Probab=99.51 E-value=9.6e-13 Score=94.80 Aligned_cols=136 Identities=21% Similarity=0.344 Sum_probs=100.3
Q ss_pred CCCCCeeEEEEEee-eeecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeec
Q psy1595 4 SSDSNVTVSYVPFK-PSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSA 82 (147)
Q Consensus 4 ~~~~~~~~s~l~~~-~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 82 (147)
++.|+...+.+.-. ..+-+. ++|.|.+.-... +...+..+.+.+...+.+.... ....+..|+.+.|.|.+.+
T Consensus 93 LsNgSl~i~~v~~~kh~~~~e-g~Yqc~atv~~~-gsi~Sr~a~v~~a~~~~f~~~~----~~~t~~~g~ta~f~c~vn~ 166 (1381)
T KOG4221|consen 93 LSNGSLYISSVLASKHNKVDE-GVYQCLATVEDV-GSILSRTAKVALAGLADFALQP----ESTTLLYGQTALFSCEVNA 166 (1381)
T ss_pred ccCCceeEeeecccccccccC-ceEEEEEEcccc-ceeecceEEEEecccCccccCc----cceeEecCCcEEEEEEEcC
Confidence 44455544433332 133444 456999986632 4566777888877666554332 6678899999999999999
Q ss_pred CCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 83 NPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 83 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
.+.+. +.|.++.+++.... ......++.|.|.++...|.|.|+|.+.+.+....++...|+|.
T Consensus 167 e~~p~-i~w~kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~ 229 (1381)
T KOG4221|consen 167 EPVPT-IMWLKNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVL 229 (1381)
T ss_pred ccCce-eEEecccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEec
Confidence 88886 99999998777655 55566788999999999999999999999887666777877763
No 84
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.50 E-value=4.5e-13 Score=72.69 Aligned_cols=80 Identities=21% Similarity=0.394 Sum_probs=59.1
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccc-cccEEeeC-------CeEEEEeeccCC-CeEEEEEEEeCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNV-TGGIILSN-------ISLVLQKVSRQS-AGEYSCMAINTE 134 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~-------~~l~i~~~~~~d-~g~y~C~~~n~~ 134 (147)
....+..|+.+.|.|.+.+.|.|..+.|++++..+.... ........ ..|.|.++..+| .|.|.|.|.|..
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 344578899999999999998883399999998765432 12212111 369999999855 899999999999
Q ss_pred CCCccccEEE
Q psy1595 135 GRGASQPIIL 144 (147)
Q Consensus 135 g~~~s~~~~l 144 (147)
|... ..+.|
T Consensus 89 G~~~-~~~~L 97 (98)
T cd05758 89 GSGT-AIISL 97 (98)
T ss_pred Cccc-EEEEe
Confidence 9865 45555
No 85
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.50 E-value=2.8e-13 Score=71.01 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=54.8
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCee---ccccccc----cEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKE---IHHNVTG----GIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~---~~~~~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
|+.+.|.|.+.+.|.|. +.|++++.. ....... ........|.|.++..+|+|.|.|.+.|..|... ..+.
T Consensus 1 G~~v~l~C~~~g~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPPE-ITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLR-ANFP 78 (81)
T ss_pred CCcEEEEeeccccCCCc-EEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEE-EEEE
Confidence 67899999999999997 999997431 1111110 1112235799999999999999999999999855 5777
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 765
No 86
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.48 E-value=1.9e-12 Score=84.36 Aligned_cols=112 Identities=16% Similarity=0.245 Sum_probs=72.3
Q ss_pred EEee-eeecCCCCeEEEEEEecccccccccccEEEEEEeCC--ceeEEeccCCCccceecCCcEEEEeEe-----ecCCC
Q psy1595 14 VPFK-PSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVP--RVVIHFGSSLNPTDIKEGDDVYFECQV-----SANPR 85 (147)
Q Consensus 14 l~~~-~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p--~~~~~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~ 85 (147)
|.|. +..+|.|. |+|.+.|..+ .....+.|.|.... .+.... ....+.+|..+.+.|.. .+.++
T Consensus 84 l~i~~~~~~DsG~-Y~C~a~N~~g---~~~~s~~L~V~~~~~~~~~~~~----~~~~~~~g~~~~i~C~~~~~~~~~~~~ 155 (326)
T PHA02785 84 MLILNPTQSDSGI-YICITKNETY---CDMMSLNLTIVSVSESNIDLIS----YPQIVNERSTGEMVCPNINAFIASNVN 155 (326)
T ss_pred EEEcccCcccCeE-EEEEEECCCc---ceEEEEEEEEEecCCCccceee----ccceecccCcEEEECCChhhcccCCCC
Confidence 4444 45555555 6999998763 23445666665432 121111 23446688999999972 34577
Q ss_pred CceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCC
Q psy1595 86 AHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRG 137 (147)
Q Consensus 86 ~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 137 (147)
+. +.|+++.. +. ........+..|.|.++..+|.|.|+|.+.|..|..
T Consensus 156 ~~-i~W~k~~~-~~--~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 203 (326)
T PHA02785 156 AD-IIWSGHRR-LR--NKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDK 203 (326)
T ss_pred ce-EEEccCCc-cC--CcceEecCCCeEEEeecChhhCeEEEEEEEeccCCE
Confidence 76 99987642 21 112222335689999999999999999999987753
No 87
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.45 E-value=6.1e-12 Score=72.54 Aligned_cols=115 Identities=12% Similarity=0.196 Sum_probs=69.3
Q ss_pred EEEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecC-CCCceEE
Q psy1595 13 YVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSAN-PRAHRLL 90 (147)
Q Consensus 13 ~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~ 90 (147)
.|.|.. +..|.|. |.|.+.+..+ .....++|.|..+|...+.. .......|+.+.|.|.+.+. |.+..+.
T Consensus 2 sL~i~~v~~~D~G~-Y~C~~~~~~~---~~~~~~~l~v~~~P~v~~~~----~~~~~~~~~~~~L~C~a~g~~P~~~~i~ 73 (139)
T cd05771 2 SLTLPGLTVHDEGT-YICSVSTPPH---QAQQIIQLSVSEPPRVRLSL----EKLVSMIEEPQTLICHIAGYYPLDVQVE 73 (139)
T ss_pred eEEECCCCHHHCEE-EEEEEEccCc---ceeeEEEEEEecCCceEEeC----CCceeecCCcEEEEEEECCCCCCCeEEE
Confidence 366654 5666666 5999987542 34667888888887664432 22333468889999999985 4433499
Q ss_pred EEECCeeccc-----ccc---ccEEeeC------CeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 91 WFHNDKEIHH-----NVT---GGIILSN------ISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 91 w~~~~~~~~~-----~~~---~~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
|+++|..... ... ......+ ..|.+..-...+...|.|.+.+...
T Consensus 74 W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 74 WTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred EEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 9999864221 000 0001112 2344443333345699999998753
No 88
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.44 E-value=6e-13 Score=68.69 Aligned_cols=63 Identities=25% Similarity=0.545 Sum_probs=49.1
Q ss_pred EEEeEeec-CCCCceEEEEECCeeccccccccE--E---eeCCeEEEEeeccCCCeEEEEEEEeCCCCCc
Q psy1595 75 YFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGI--I---LSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138 (147)
Q Consensus 75 ~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~--~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 138 (147)
.|.|.+.+ .|.+. +.|++++..+........ . .....|.|.++..+|.|.|+|.|.|..|...
T Consensus 2 ~l~C~~~g~~P~p~-~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 70 (75)
T cd05750 2 VLKCEATSEYPSLR-FKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDT 70 (75)
T ss_pred EEEEEccCCCCCce-EEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCcee
Confidence 58899998 88886 999999987764432211 1 1134699999999999999999999998744
No 89
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.43 E-value=4e-12 Score=67.10 Aligned_cols=78 Identities=24% Similarity=0.491 Sum_probs=58.1
Q ss_pred ceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEE---eeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGII---LSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
.+..|+.+.|.|.+.+.|.+. +.|++++..+......... .....|.|.++..+|.|.|.|.+.|..|... ..+.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~-~~~~ 82 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPT-ITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSIN-HTYK 82 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCe-EEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEE-EEEE
Confidence 345699999999999988886 9999998876533211111 1123688999999999999999999988744 5666
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 654
No 90
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.42 E-value=3.2e-12 Score=67.35 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=54.4
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccc----c--EEeeCCeEEEEeeccCCCeEEEEEEEeCCC-CCccccEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTG----G--IILSNISLVLQKVSRQSAGEYSCMAINTEG-RGASQPII 143 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~----~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~s~~~~ 143 (147)
|+.+.|.|.+.+.|.+. +.|++.++........ . .......|.|.++..+|+|.|.|.+.|..+ ...+..+.
T Consensus 1 Ge~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVD-FSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccE-EEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 67899999999988886 9999876532211100 0 011235799999999999999999999865 33456788
Q ss_pred EEEC
Q psy1595 144 LAVK 147 (147)
Q Consensus 144 l~v~ 147 (147)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 8773
No 91
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.42 E-value=2.4e-12 Score=67.80 Aligned_cols=68 Identities=19% Similarity=0.446 Sum_probs=54.4
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
....+..|+.+.|.|.+.+ +.+. +.|+++|.++..... +....+..|.|.++..+|+|.|+|.+.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~-i~W~~ng~~i~~~~~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLAR-VVWKFDGKVLTPESA-KYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCe-EEEEECCEECCCCCc-eEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 4567788999999999765 5565 999999998865432 334456789999999999999999998763
No 92
>KOG4222|consensus
Probab=99.39 E-value=1.4e-12 Score=93.39 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=96.0
Q ss_pred eEEEEEee-eeecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecCCCCce
Q psy1595 10 TVSYVPFK-PSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHR 88 (147)
Q Consensus 10 ~~s~l~~~-~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 88 (147)
..+.|+|. +.+.|.|. |.|.+.|..+ ...+...+|.|+.+|.+..++ ....+..|..+.+.|.+.|.|.+.
T Consensus 185 sgG~LlIsnvrksD~Gt-Y~CVatNmvG--~ReS~~A~lsv~e~P~f~~rp----~~~~v~~g~~~~f~c~v~GdP~P~- 256 (1281)
T KOG4222|consen 185 SGGNLLISNVRKSDEGT-YACVATNMVG--ERESIPARLSVQEKPWFWKRP----KDLAVLVGAAAEFDCRVGGDPQPT- 256 (1281)
T ss_pred cCCcEEEeccccCCCce-eeeeeccccc--ccccccceeeeccCCcccccc----ccceeecccccccccccCCCCCCc-
Confidence 34456665 46667666 5999999884 567888999999999876554 566778899999999999999998
Q ss_pred EEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 89 LLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 89 ~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
++|-+++..+... .........+|.|.++...|.|.|.|.+.|.+|... ....|+|
T Consensus 257 Vrwkk~~~~~P~~-ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~-asa~ltV 312 (1281)
T KOG4222|consen 257 VRWKKDDPSLPRS-RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLE-ASATLTV 312 (1281)
T ss_pred eeeeccCCCCCcc-ceeeeeccccccccccCCCcccceeeeccccccccc-cccceEE
Confidence 9999977655432 233344458899999999999999999999987533 3344444
No 93
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.39 E-value=8.6e-12 Score=67.03 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=55.7
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccc------cccEE--ee---CCeEEEEeeccCCCeEEEEEEEe
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNV------TGGII--LS---NISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~------~~~~~--~~---~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
....+..|+.+.|.|.+.+.|.+. +.|++++..+.... ..+.. .. ...|.|.++..+|.|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~-v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSS-LQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCe-EEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 456788899999999999988887 99999875431100 01111 11 24799999999999999999987
Q ss_pred CCCCCccccEEEEE
Q psy1595 133 TEGRGASQPIILAV 146 (147)
Q Consensus 133 ~~g~~~s~~~~l~v 146 (147)
.. .......|.|
T Consensus 84 ~~--~~~~~~~~~v 95 (95)
T cd05882 84 MP--VRTAKATVTV 95 (95)
T ss_pred ec--cccEEEEEEC
Confidence 32 2234455543
No 94
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.37 E-value=5.8e-12 Score=66.58 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=55.1
Q ss_pred CccceecCCcEEEEeEeec-CCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCc
Q psy1595 64 NPTDIKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 138 (147)
....+.+|+.+.|.|.+.+ .|.+. +.|++++..+... ....+..|.|.++..+|+|.|.|.+.|..|...
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~-i~W~~~~~~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAYT-LVWTRVGGGLPSR----AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCcE-EEEEECCCcCCCc----ccccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 4556788999999999875 56665 9999998664321 123356899999999999999999999988754
No 95
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.37 E-value=2e-11 Score=65.73 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=59.2
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccc-cccEEe-------eCCeEEEEeeccCC-CeEEEEEEEeCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNV-TGGIIL-------SNISLVLQKVSRQS-AGEYSCMAINTE 134 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~-------~~~~l~i~~~~~~d-~g~y~C~~~n~~ 134 (147)
....+..|+.+.|.|.+.+.|+|..+.|..++..+.... ....+. ....|.|.++.+.| .|.|.|.|.|.+
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 456678899999999998888876679988877654321 122221 13469999998877 789999999999
Q ss_pred CCCccccEEE
Q psy1595 135 GRGASQPIIL 144 (147)
Q Consensus 135 g~~~s~~~~l 144 (147)
|... ..+.|
T Consensus 89 G~d~-~~i~L 97 (98)
T cd05898 89 GSGT-AIIQL 97 (98)
T ss_pred ccce-EEEEe
Confidence 9865 45555
No 96
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.37 E-value=5.1e-12 Score=66.63 Aligned_cols=74 Identities=14% Similarity=0.283 Sum_probs=53.3
Q ss_pred CCcEEEEeEeecC--CCCceEEEEECCeeccccccc---c----EEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCcccc
Q psy1595 71 GDDVYFECQVSAN--PRAHRLLWFHNDKEIHHNVTG---G----IILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 71 g~~~~l~C~~~~~--~~~~~~~w~~~~~~~~~~~~~---~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
|+.+.|.|.+.+. |.+. +.|.+++......... . .......|.|.++..+|+|.|.|.+.|..|... ..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~-~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVD-FQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK-ES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEE-EEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE-EE
Confidence 6789999999998 6676 9998877644221100 0 011235799999999999999999999988744 45
Q ss_pred EEEEE
Q psy1595 142 IILAV 146 (147)
Q Consensus 142 ~~l~v 146 (147)
..|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 66655
No 97
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.36 E-value=1.4e-11 Score=60.97 Aligned_cols=63 Identities=29% Similarity=0.645 Sum_probs=49.5
Q ss_pred cCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 70 ~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
+|+.+.|.|.+.+.+.+. +.|++++..+. ...........|.|.++...|.|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPN-ITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCe-EEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999987777776 99999987765 1222233456899999999999999999998754
No 98
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.35 E-value=8e-12 Score=66.79 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=54.7
Q ss_pred CccceecCCcEEEEeEee-cCCCCceEEEEECCeeccc--cccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 64 NPTDIKEGDDVYFECQVS-ANPRAHRLLWFHNDKEIHH--NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~-~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
....+.+|+.+.|.|... +.|.+. +.|++++.+... .........++.|.+.++..+|+|.|.|.|.|.+..
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~-~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLS-YRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCE-EEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 345678899999999764 678886 999999875422 222223334688999999999999999999998643
No 99
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.34 E-value=1e-11 Score=66.31 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=52.3
Q ss_pred ceecCCcEEEEeEeecC-----CCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 67 DIKEGDDVYFECQVSAN-----PRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
.+..|....|.|...+. |.+. +.|+++++++.... .....+..|.|.++..+|+|.|+|.+.|..+.
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~-i~Wyk~~~~i~~~~--~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPP-VQWYKDCKLLEGDR--KRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCc-EEEeECCEECCCCc--cEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 45678899999987532 4566 99999998876432 22226678999999999999999999998765
No 100
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.33 E-value=3.6e-11 Score=64.19 Aligned_cols=78 Identities=22% Similarity=0.421 Sum_probs=54.3
Q ss_pred ceecCCcEEEEeEeecCCCCceEEEEECCe--ecccc--ccccEEeeCCeEEEEeeccCCCeEEEEEEEeC-CCCCcccc
Q psy1595 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDK--EIHHN--VTGGIILSNISLVLQKVSRQSAGEYSCMAINT-EGRGASQP 141 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~--~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~-~g~~~s~~ 141 (147)
...+|+.+.|.|.. +.|.+. +.|+++.. ..... ...+.......|.|.++.++|+|.|+|.+.+. .+... ..
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p~-v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~-~~ 83 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQAS-VKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTL-AK 83 (91)
T ss_pred EEecCCcEEEEEEC-CCCCce-EEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEE-EE
Confidence 45779999999996 467776 99998432 21111 11233345567999999999999999999864 44433 47
Q ss_pred EEEEEC
Q psy1595 142 IILAVK 147 (147)
Q Consensus 142 ~~l~v~ 147 (147)
++|+|+
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 788774
No 101
>KOG4222|consensus
Probab=99.32 E-value=3.6e-11 Score=86.54 Aligned_cols=118 Identities=23% Similarity=0.396 Sum_probs=85.5
Q ss_pred CCCCeEEEEEEecccccccccccEEEEEEeCC-ceeEEeccCCCccceecCCcEEEEeEee-cCCCCceEEEEECCeecc
Q psy1595 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVP-RVVIHFGSSLNPTDIKEGDDVYFECQVS-ANPRAHRLLWFHNDKEIH 99 (147)
Q Consensus 22 d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~w~~~~~~~~ 99 (147)
|.|. |+|.++|..+ ...+....|.+...+ .+.+.. ....+..|+.+.+.|... +.|.+. +.|.++|.++.
T Consensus 103 d~G~-y~cvasn~~g--~avSr~a~L~vavlrddfrv~p----rd~~~a~ge~avlEcgpP~ghpept-vSw~Kdg~pl~ 174 (1281)
T KOG4222|consen 103 DHGV-YSCVASNRLG--EAVSRGASLIVAVLRDDFRVSP----RDVQAAVGEEAVLECGPPRGHPEPT-VSWVKDGKPLD 174 (1281)
T ss_pred CCce-eEeeecCccc--eeeecCceEEEEEechhcccCc----ccccccccceeEEeccCCCCCCCCc-ceeecCCCccc
Confidence 4455 6999999885 455666666554322 222221 334566799999999865 567787 99999999876
Q ss_pred cccc-ccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEEC
Q psy1595 100 HNVT-GGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147 (147)
Q Consensus 100 ~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v~ 147 (147)
.... .......+.|.|.++...|.|.|.|.+.|.+|...+....|.|.
T Consensus 175 ~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~ 223 (1281)
T KOG4222|consen 175 HYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ 223 (1281)
T ss_pred cccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec
Confidence 3321 22334567899999999999999999999999988888887763
No 102
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.30 E-value=1.8e-11 Score=63.31 Aligned_cols=63 Identities=29% Similarity=0.523 Sum_probs=46.2
Q ss_pred EEEeEeec-CCCCceEEEEECCeecccccc--ccEE--e--eCCeEEEEeeccCCCeEEEEEEEeCCCCCc
Q psy1595 75 YFECQVSA-NPRAHRLLWFHNDKEIHHNVT--GGII--L--SNISLVLQKVSRQSAGEYSCMAINTEGRGA 138 (147)
Q Consensus 75 ~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~--~~~~--~--~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 138 (147)
.|.|.+.+ .|.+. +.|+++|+.+..... .+.. . ....|.|.++..+|+|.|+|.+.|..|...
T Consensus 2 ~L~C~a~~~~p~~~-~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~ 71 (76)
T cd05895 2 VLRCETVSEYPSLR-FKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71 (76)
T ss_pred EEEEecccCCCCCc-eEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence 68899864 56666 999999987753221 1111 1 124699999999999999999999998744
No 103
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.29 E-value=5.7e-11 Score=61.87 Aligned_cols=72 Identities=33% Similarity=0.668 Sum_probs=57.2
Q ss_pred cceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEE
Q psy1595 66 TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145 (147)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 145 (147)
..+..|+.+.|.|.+.+.|... +.|++++..+.. ....+.+..+..+|.|.|.|.+.+..+...+..+.|.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~--------~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQ-VQWYKNGSPINS--------SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSE-EEEEETTEEEEE--------ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEccccee-eeeeeeeeeeee--------eeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 4578899999999999887775 999998866542 1222677888899999999999997766666778877
Q ss_pred E
Q psy1595 146 V 146 (147)
Q Consensus 146 v 146 (147)
|
T Consensus 80 V 80 (80)
T PF13895_consen 80 V 80 (80)
T ss_dssp E
T ss_pred C
Confidence 6
No 104
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.26 E-value=3.9e-11 Score=59.93 Aligned_cols=59 Identities=24% Similarity=0.563 Sum_probs=42.9
Q ss_pred CCcEEEEeEe-ecCCCCceEEEEECCeeccccccccEEeeCC----eEEEEeeccCCCeEEEEEE
Q psy1595 71 GDDVYFECQV-SANPRAHRLLWFHNDKEIHHNVTGGIILSNI----SLVLQKVSRQSAGEYSCMA 130 (147)
Q Consensus 71 g~~~~l~C~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~C~~ 130 (147)
|+.+.|.|.+ ...+... +.|+++++............... .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTT-VTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSE-EEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcE-EEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 5555565 99999988665432222122222 2999999999999999986
No 105
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.26 E-value=1.4e-10 Score=60.00 Aligned_cols=62 Identities=19% Similarity=0.375 Sum_probs=45.2
Q ss_pred EEEEeEee-cCCCCceEEEEECCeecccccc----ccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 74 VYFECQVS-ANPRAHRLLWFHNDKEIHHNVT----GGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 74 ~~l~C~~~-~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
+.|.|... +.|++. +.||++++++..... .......+.|.+.....+|.+.|+|.|.|+++.
T Consensus 2 ~~L~C~s~~skP~a~-i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAAT-LRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCe-EEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 67899987 467776 999999998864321 111223345787777777888999999999865
No 106
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.26 E-value=9.4e-11 Score=63.12 Aligned_cols=80 Identities=19% Similarity=0.396 Sum_probs=55.0
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCee--------ccccccccEEe---eCCeEEEEeeccCCCeEEEEEEEe
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKE--------IHHNVTGGIIL---SNISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~--------~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
....+.+|+.+.|.|.+.+.|.+. +.|++.++. .....+..... ...+|.|.++..+|+|.|.|.+.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~-v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTS-LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceE-EEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 566788999999999999988886 999864321 11111111111 224799999999999999999998
Q ss_pred CCCCCccccEEEEE
Q psy1595 133 TEGRGASQPIILAV 146 (147)
Q Consensus 133 ~~g~~~s~~~~l~v 146 (147)
..+. +....|.|
T Consensus 84 ~~~~--~~~~~l~v 95 (95)
T cd07701 84 MPVK--TSKAYLTV 95 (95)
T ss_pred ecCc--cEEEEEEC
Confidence 5333 34566654
No 107
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.25 E-value=5.4e-11 Score=63.51 Aligned_cols=71 Identities=21% Similarity=0.336 Sum_probs=55.1
Q ss_pred CccceecCCcEEEEeE-eecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCe-EEEEEEEeCCC
Q psy1595 64 NPTDIKEGDDVYFECQ-VSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAG-EYSCMAINTEG 135 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g 135 (147)
+...+.+|+.+.|.|. ..+.|.|. +.|+.++........+.....++.|.|.++..+|+| .|.|.|.|.+.
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~-i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLR-IYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCE-EEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 4567888999999997 57899997 999987654333222223334688999999999999 79999999864
No 108
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.23 E-value=6.1e-10 Score=58.36 Aligned_cols=81 Identities=27% Similarity=0.549 Sum_probs=58.8
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEEC-CeeccccccccEEeeC--CeEEEEeeccCCCeEEEEEEEeCCCCCcccc
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHN-DKEIHHNVTGGIILSN--ISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
...+..|+.+.|.|...+.+.+. +.|+++ +..+............ ..|.|.++..+|.|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~- 80 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPE-VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST- 80 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCe-EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-
Confidence 34567799999999998876665 999998 6655422222222222 579999999999999999999887775543
Q ss_pred EEEEEC
Q psy1595 142 IILAVK 147 (147)
Q Consensus 142 ~~l~v~ 147 (147)
+.|.|.
T Consensus 81 ~~l~V~ 86 (86)
T smart00410 81 TTLTVL 86 (86)
T ss_pred EEEEEC
Confidence 777763
No 109
>smart00409 IG Immunoglobulin.
Probab=99.23 E-value=6.1e-10 Score=58.36 Aligned_cols=81 Identities=27% Similarity=0.549 Sum_probs=58.8
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEEC-CeeccccccccEEeeC--CeEEEEeeccCCCeEEEEEEEeCCCCCcccc
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHN-DKEIHHNVTGGIILSN--ISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
...+..|+.+.|.|...+.+.+. +.|+++ +..+............ ..|.|.++..+|.|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~- 80 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPE-VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST- 80 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCe-EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-
Confidence 34567799999999998876665 999998 6655422222222222 579999999999999999999887775543
Q ss_pred EEEEEC
Q psy1595 142 IILAVK 147 (147)
Q Consensus 142 ~~l~v~ 147 (147)
+.|.|.
T Consensus 81 ~~l~V~ 86 (86)
T smart00409 81 TTLTVL 86 (86)
T ss_pred EEEEEC
Confidence 777763
No 110
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.18 E-value=6.9e-10 Score=59.56 Aligned_cols=81 Identities=12% Similarity=0.255 Sum_probs=61.0
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEe-------eCCeEEEEeeccCCCeEEEEEEEeCCCCC
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL-------SNISLVLQKVSRQSAGEYSCMAINTEGRG 137 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 137 (147)
...+.+|+.+.|.|.+.++|+|..+.|.+++..+.......... ....|.+..++.++.|.|+|.|.|.....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45678899999999999999986689999887654332211111 12469999999999999999999998764
Q ss_pred ccccEEEEE
Q psy1595 138 ASQPIILAV 146 (147)
Q Consensus 138 ~s~~~~l~v 146 (147)
. -.+.|.|
T Consensus 92 s-~tF~l~v 99 (101)
T cd05860 92 S-VTFNVYV 99 (101)
T ss_pred E-EEEEEEE
Confidence 3 5666665
No 111
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.17 E-value=5.9e-10 Score=58.92 Aligned_cols=75 Identities=16% Similarity=0.327 Sum_probs=50.8
Q ss_pred CCcEEEEeEeecCCCC-ceEEEEECCeeccccc--c---ccE---EeeCCeEEEEeeccCCCeEEEEEEEeCCCCCcccc
Q psy1595 71 GDDVYFECQVSANPRA-HRLLWFHNDKEIHHNV--T---GGI---ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~-~~~~w~~~~~~~~~~~--~---~~~---~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~ 141 (147)
|+.+.|.|.+.+.+.+ ..+.|...++...... . ... ......|.|.++..+|+|.|+|.|.|..|... ..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~-~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK-NS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec-cc
Confidence 6789999999875433 2379988765332110 0 000 11235799999999999999999999887644 45
Q ss_pred EEEEE
Q psy1595 142 IILAV 146 (147)
Q Consensus 142 ~~l~v 146 (147)
..|.|
T Consensus 80 t~~~V 84 (86)
T cd05862 80 TIVIV 84 (86)
T ss_pred EEEEE
Confidence 66665
No 112
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.17 E-value=5e-10 Score=59.88 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=56.8
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCC--CCCccccE
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE--GRGASQPI 142 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~--g~~~s~~~ 142 (147)
...+..|+.+.|.|... .+... +.|+++|....... .........+.|.++..+|+|.|+|.+.+.. -...|.++
T Consensus 10 ~~vV~~G~~VtL~C~~~-~~~~~-f~l~k~g~~~~~~~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~l 86 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP-YGAVE-YRLYREGSTFAVKK-PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPL 86 (91)
T ss_pred CCccCCCCcEEEEEecC-CCCCE-EEEEECCCCccccc-cCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcE
Confidence 34678899999999876 45555 89999987543211 1111223469999999999999999999863 24567778
Q ss_pred EEEEC
Q psy1595 143 ILAVK 147 (147)
Q Consensus 143 ~l~v~ 147 (147)
.|.|.
T Consensus 87 el~Vt 91 (91)
T cd05751 87 ELVVT 91 (91)
T ss_pred EEEeC
Confidence 88773
No 113
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.15 E-value=4.1e-10 Score=60.25 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=49.4
Q ss_pred ceecCCcEEEEeEe-ec----CCCCceEEEEECCeeccccccccEE-eeCCeEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 67 DIKEGDDVYFECQV-SA----NPRAHRLLWFHNDKEIHHNVTGGII-LSNISLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 67 ~~~~g~~~~l~C~~-~~----~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
.+..|....+.|+- .+ .+.+. +.|++++.++......... .....|.|.++..+|+|.|+|.+.+..+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~-v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVE-LQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCc-EEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 34567888999973 22 34455 9999999887643322222 12357999999999999999999998643
No 114
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.13 E-value=1.9e-10 Score=61.54 Aligned_cols=69 Identities=13% Similarity=0.259 Sum_probs=48.1
Q ss_pred ceecCCcEEEEeEeecCCCCceEEEEECCeeccccc------------ccc--EEe---e--CCeEEEEeeccCCCeEEE
Q psy1595 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNV------------TGG--IIL---S--NISLVLQKVSRQSAGEYS 127 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~------------~~~--~~~---~--~~~l~i~~~~~~d~g~y~ 127 (147)
.+..|+.+.|.|...+.+.+. +.|+++++...... ..+ ... . ...|.|.++..+|+|.|.
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~-i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcE-EEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 457799999999998877776 99997663321100 000 000 1 135999999999999999
Q ss_pred EEEEeCCCC
Q psy1595 128 CMAINTEGR 136 (147)
Q Consensus 128 C~~~n~~g~ 136 (147)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999986543
No 115
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.10 E-value=1.8e-09 Score=58.20 Aligned_cols=70 Identities=16% Similarity=0.335 Sum_probs=50.3
Q ss_pred ccceecCCcEEEEeEeec----------CCCCceEEEEECCeecccccc-----ccEEeeCCeEEEEeeccCCCeEEEEE
Q psy1595 65 PTDIKEGDDVYFECQVSA----------NPRAHRLLWFHNDKEIHHNVT-----GGIILSNISLVLQKVSRQSAGEYSCM 129 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~----------~~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~g~y~C~ 129 (147)
...+.+|+.+.|.|.... ......+.|+|++........ .+.......|.+..+..+|+|.|+|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 345678999999998621 111223899999755443221 24455678899999999999999999
Q ss_pred EEeCC
Q psy1595 130 AINTE 134 (147)
Q Consensus 130 ~~n~~ 134 (147)
+.|..
T Consensus 89 ~rN~t 93 (104)
T cd05896 89 LRNST 93 (104)
T ss_pred ECCCC
Confidence 99875
No 116
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.09 E-value=2.3e-09 Score=56.17 Aligned_cols=72 Identities=17% Similarity=0.405 Sum_probs=46.4
Q ss_pred EEEEeEeec-CCCCceEEEEECCeeccccccccEE-------eeCCeEEEEeeccCCCeEEEEEEEeCCC-CCccccEEE
Q psy1595 74 VYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGII-------LSNISLVLQKVSRQSAGEYSCMAINTEG-RGASQPIIL 144 (147)
Q Consensus 74 ~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~s~~~~l 144 (147)
+.|.|.+.+ .|.+. +.|+++|+.+......... .....|.+.....+|.|.|+|.|.|... ......+.|
T Consensus 2 ~~L~C~v~g~~P~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAE-IIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCE-EEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 578999987 57775 9999999876432211111 1113466666666678899999999863 333345666
Q ss_pred EE
Q psy1595 145 AV 146 (147)
Q Consensus 145 ~v 146 (147)
.|
T Consensus 81 ~v 82 (82)
T cd05759 81 DV 82 (82)
T ss_pred cC
Confidence 54
No 117
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.09 E-value=1.6e-09 Score=56.76 Aligned_cols=65 Identities=22% Similarity=0.441 Sum_probs=51.1
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEe
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
....+..|.++.|.|...+. .+. +.|+.++..+... .+.......|.|..+..+|+|.|.|.+.-
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~-v~W~~ng~~l~~~--~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LAS-PVWLFNGTPLNAQ--FSYRVGTDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-Ccc-EEEEECCcccCCC--cceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence 45567889999999998775 445 9999999987543 23444556688999999999999999763
No 118
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.07 E-value=4.2e-09 Score=56.78 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=53.4
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeecc-------ccccccEE-e---eCCeEEEEeeccCCCeEEEEEEEe
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH-------HNVTGGII-L---SNISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~-~---~~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
+...+.+|+.+.|.|.+.+.+.+. +.|++.+.... ....+... . ....|.|.++..+|+|.|.|.+.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~-v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSS-LQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCce-EEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 455678899999999998777776 99986332110 00011111 1 124699999999999999999997
Q ss_pred CCCCCccccEEEEE
Q psy1595 133 TEGRGASQPIILAV 146 (147)
Q Consensus 133 ~~g~~~s~~~~l~v 146 (147)
.... ...+.|.|
T Consensus 84 ~~~~--~~~~~~~v 95 (95)
T cd05717 84 MPVQ--TAKATVTV 95 (95)
T ss_pred CCCc--eEEEEEEC
Confidence 6533 24556654
No 119
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.02 E-value=4.8e-09 Score=57.33 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=54.1
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeec--------ccc----------ccccEEeeCCeEEEEeeccCCCeE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEI--------HHN----------VTGGIILSNISLVLQKVSRQSAGE 125 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~--------~~~----------~~~~~~~~~~~l~i~~~~~~d~g~ 125 (147)
.+..+.+|+++.|.|......... +.|++..... ... ..+.....+.+|.|.++.++|+|.
T Consensus 6 ~p~~~~~G~~V~L~v~~~p~~~~~-~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~ 84 (105)
T cd05774 6 VPPQVAEGENVLLLVHNLPENLLA-YAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGF 84 (105)
T ss_pred cCCcccCCCCEEEEecCCCCCceE-EEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEE
Confidence 344677899999998764333345 8999953211 000 111123346789999999999999
Q ss_pred EEEEEEeCCCCCccccEEEEE
Q psy1595 126 YSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 126 y~C~~~n~~g~~~s~~~~l~v 146 (147)
|+|.+.+.........+.|.|
T Consensus 85 Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 85 YTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEeCCccEEEEEEEEEC
Confidence 999999976443445566654
No 120
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.95 E-value=5.5e-09 Score=55.93 Aligned_cols=75 Identities=20% Similarity=0.372 Sum_probs=50.1
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeecccc-----------------ccccEEeeCCeEEEEeeccCCCeEEEEEEEeC
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHN-----------------VTGGIILSNISLVLQKVSRQSAGEYSCMAINT 133 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~-----------------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 133 (147)
|+++.|.|......... +.|++........ ........+.+|.|.++..+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~-i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQE-ITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEE-EEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 67888999876544444 8898865332110 00111223568999999999999999999988
Q ss_pred CCCCccccEEEEE
Q psy1595 134 EGRGASQPIILAV 146 (147)
Q Consensus 134 ~g~~~s~~~~l~v 146 (147)
.+......+.|.|
T Consensus 80 ~~~~~~~~~~l~v 92 (92)
T cd05741 80 NGVTENAKFFLRV 92 (92)
T ss_pred CCcEEEEEEEEEC
Confidence 7655555666654
No 121
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.91 E-value=9.5e-09 Score=52.61 Aligned_cols=58 Identities=26% Similarity=0.587 Sum_probs=39.5
Q ss_pred EEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEe
Q psy1595 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 74 ~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
+.|.|.+.+.+++..+.|+ +..................|.+.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 9999999987733349999 211111111111233456799999999999999999987
No 122
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.90 E-value=1e-08 Score=63.60 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=55.4
Q ss_pred CccceecCCcEEEEeEeecCC-----------CCceEEEEECCeecccc--cc---------ccEEeeCCeEEEEeeccC
Q psy1595 64 NPTDIKEGDDVYFECQVSANP-----------RAHRLLWFHNDKEIHHN--VT---------GGIILSNISLVLQKVSRQ 121 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~-----------~~~~~~w~~~~~~~~~~--~~---------~~~~~~~~~l~i~~~~~~ 121 (147)
....+.+|+++.|.|.+.+.+ .+. +.|++.+...-.. .. .........|.|.++..+
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~-V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYN-VTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCcc-EEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 455678899999999986643 234 8999987542110 00 001122468999999999
Q ss_pred CCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 122 SAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 122 d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
|+|.|+|.+.|..+... ..+.|.|
T Consensus 109 DsG~Y~C~a~N~~~~~~-~~i~L~V 132 (227)
T PHA02826 109 DEGIYICTISSGNICEE-STIRLTF 132 (227)
T ss_pred HCEEEEEEEEECCcceE-EEEEEEE
Confidence 99999999999776543 4566655
No 123
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.87 E-value=4.6e-08 Score=52.56 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=53.0
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEECCeeccccc--cccEEeeCCeEEEEeeccCCCeEEEEEEEeCC----CCCc
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNV--TGGIILSNISLVLQKVSRQSAGEYSCMAINTE----GRGA 138 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~----g~~~ 138 (147)
...+..|+.+.|.|.... .... +.|+++|....... ..........+.|..+..+|+|.|.|...... -...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~-f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~ 86 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDR-FILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAP 86 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCE-EEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCC
Confidence 456778999999998765 3344 89999987543211 00001112368999999999999999975321 2356
Q ss_pred cccEEEEE
Q psy1595 139 SQPIILAV 146 (147)
Q Consensus 139 s~~~~l~v 146 (147)
|.++.|.|
T Consensus 87 Sdpl~l~V 94 (94)
T cd05711 87 SDPLKIVV 94 (94)
T ss_pred CCCeEEeC
Confidence 67777764
No 124
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.85 E-value=6.2e-08 Score=50.32 Aligned_cols=71 Identities=23% Similarity=0.448 Sum_probs=44.8
Q ss_pred EEEEeEeec-CCCCceEEEEECCeecccccccc-----EEeeCCeEEEEeeccCCCe-EEEEEEEeCCCCCccccEEEEE
Q psy1595 74 VYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGG-----IILSNISLVLQKVSRQSAG-EYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 74 ~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.|.|.+.+ .|++. +.|+++++++....... .....++|.+. ..++|.| .|+|.|.|++-........|.|
T Consensus 2 ~~L~C~s~gSkP~A~-I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~-p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAAT-IRWFKGNKELTGKSTVEETWSRMFTVTSQLMLK-VTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCE-EEEEECCEECcCcccceeccCCCcEEEEEEEEE-CchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 578999986 45565 99999998876532110 01112345554 4555554 8999999987433445566665
No 125
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.82 E-value=9.5e-08 Score=51.23 Aligned_cols=69 Identities=16% Similarity=0.301 Sum_probs=47.5
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeecc------ccccccEE--e---eCCeEEEEeeccCCCeEEEEEEEe
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH------HNVTGGII--L---SNISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~------~~~~~~~~--~---~~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
+...+.+|+.+.|.|.+....... +.|++.+.... ...+.++. . ...+|.|.++..+|.|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~-v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSV-IQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccE-EEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 456778899999999998765554 78877653321 01111222 1 123599999999999999999875
Q ss_pred C
Q psy1595 133 T 133 (147)
Q Consensus 133 ~ 133 (147)
.
T Consensus 84 ~ 84 (95)
T cd05881 84 D 84 (95)
T ss_pred c
Confidence 3
No 126
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.80 E-value=1.2e-07 Score=52.30 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=48.1
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCeecc-------------ccccccEEe-----eCCeEEEEeeccCCCeE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH-------------HNVTGGIIL-----SNISLVLQKVSRQSAGE 125 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~-------------~~~~~~~~~-----~~~~l~i~~~~~~d~g~ 125 (147)
....+..|+.+.|.|...+.+... +.|++....-. ....+.... ....|.|.++..+|+|.
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~-v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~ 84 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYY-LFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV 84 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccE-EEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence 455678899999999998765555 89998542100 001111111 12469999999999999
Q ss_pred EEEEEEeCC
Q psy1595 126 YSCMAINTE 134 (147)
Q Consensus 126 y~C~~~n~~ 134 (147)
|.|.+.+..
T Consensus 85 Y~C~~~~~~ 93 (109)
T cd04983 85 YFCALSESG 93 (109)
T ss_pred EEEEEecCC
Confidence 999998753
No 127
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.77 E-value=2.1e-07 Score=51.13 Aligned_cols=76 Identities=22% Similarity=0.481 Sum_probs=49.1
Q ss_pred cCCcEEEEeEeecCC-----CCceEEEEECCee-------c-c--------ccccccEEee-----CCeEEEEeeccCCC
Q psy1595 70 EGDDVYFECQVSANP-----RAHRLLWFHNDKE-------I-H--------HNVTGGIILS-----NISLVLQKVSRQSA 123 (147)
Q Consensus 70 ~g~~~~l~C~~~~~~-----~~~~~~w~~~~~~-------~-~--------~~~~~~~~~~-----~~~l~i~~~~~~d~ 123 (147)
.|+.+.|.|.....| ....+.|++.... + . .....+.... ..+|.|.++..+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378899999876542 2223899985421 0 0 0000111111 24699999999999
Q ss_pred eEEEEEEEeCCCCCccccEEEEE
Q psy1595 124 GEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 124 g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
|.|.|.+.+..+... ..+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~-~~~~l~v 102 (106)
T cd05877 81 GRYRCEVIDGLEDES-VVVALRL 102 (106)
T ss_pred EEEEEEEEecccceE-EEEEEEE
Confidence 999999998777644 5677776
No 128
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.76 E-value=2.8e-07 Score=51.33 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=50.0
Q ss_pred ccceecCCcEEEEeEeecCC---CCceEEEEE---------------CCeeccc---cccccEE------eeCCeEEEEe
Q psy1595 65 PTDIKEGDDVYFECQVSANP---RAHRLLWFH---------------NDKEIHH---NVTGGII------LSNISLVLQK 117 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~---~~~~~~w~~---------------~~~~~~~---~~~~~~~------~~~~~l~i~~ 117 (147)
...+..|+.+.|.|...... ....+.|.. +|+.... ....+.. ..+.+|.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 34567799999999986532 122488922 3332210 0111221 1235799999
Q ss_pred eccCCCeEEEEEEEeCCCC-CccccEEEEE
Q psy1595 118 VSRQSAGEYSCMAINTEGR-GASQPIILAV 146 (147)
Q Consensus 118 ~~~~d~g~y~C~~~n~~g~-~~s~~~~l~v 146 (147)
+..+|.|.|+|.+.|+-+. .....+.|.|
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred CCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 9999999999999997653 2223455543
No 129
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.74 E-value=1.8e-07 Score=51.41 Aligned_cols=76 Identities=21% Similarity=0.422 Sum_probs=49.0
Q ss_pred cCCcEEEEeEeecCC-----CCceEEEEECC---ee---ccc--c--------ccccEEe-----eCCeEEEEeeccCCC
Q psy1595 70 EGDDVYFECQVSANP-----RAHRLLWFHND---KE---IHH--N--------VTGGIIL-----SNISLVLQKVSRQSA 123 (147)
Q Consensus 70 ~g~~~~l~C~~~~~~-----~~~~~~w~~~~---~~---~~~--~--------~~~~~~~-----~~~~l~i~~~~~~d~ 123 (147)
.|+.+.|.|.....+ ....+.|++.. .. +.. . ...+... .+.+|.|.++..+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378899999977542 22238998862 11 000 0 0001111 235799999999999
Q ss_pred eEEEEEEEeCCCCCccccEEEEE
Q psy1595 124 GEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 124 g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
|.|.|.+.+..+. ....+.|.|
T Consensus 81 G~Y~C~v~~~~~~-~~~~v~L~V 102 (106)
T cd05714 81 GRYRCEVIDGIED-EQDTVELEV 102 (106)
T ss_pred EEEEEEEEcCCCc-eEEEEEEEE
Confidence 9999999987554 346777776
No 130
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.74 E-value=3.7e-07 Score=49.34 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=47.1
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeec----c-----------ccccccEEe-----eCCeEEEEeeccCCCeEEEEEE
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEI----H-----------HNVTGGIIL-----SNISLVLQKVSRQSAGEYSCMA 130 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~----~-----------~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~ 130 (147)
|+.+.|.|..........+.|++..... . .....+... .+.+|.|.++..+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6778888876543332237888742210 0 000001111 2356999999999999999998
Q ss_pred EeC-CCCCccccEEEEEC
Q psy1595 131 INT-EGRGASQPIILAVK 147 (147)
Q Consensus 131 ~n~-~g~~~s~~~~l~v~ 147 (147)
... .|. .+..+.|+|.
T Consensus 81 ~~~p~g~-~~~~~~L~v~ 97 (97)
T cd05846 81 NTFPDGS-KSGTMCLTVY 97 (97)
T ss_pred EeCCCCC-eeeEEEEEEC
Confidence 865 455 4467888873
No 131
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.71 E-value=4.8e-08 Score=52.81 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=50.0
Q ss_pred cCCcEEEEeEeec-CCCCceEEEEECCeeccccc-------------c--ccEEe--eCCeEEEEeeccCCCeEEEEEEE
Q psy1595 70 EGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNV-------------T--GGIIL--SNISLVLQKVSRQSAGEYSCMAI 131 (147)
Q Consensus 70 ~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~-------------~--~~~~~--~~~~l~i~~~~~~d~g~y~C~~~ 131 (147)
.|+.+.|.|.... ..... +.|++......... . .+... .+.+|.|.++..+|+|.|.|.+.
T Consensus 3 ~G~sVtL~c~~~~~~~~~~-v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIES-ITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred cCCeEEEeCCCCCCcEEEE-EEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 5888999997654 33333 78887543211100 0 01111 13579999999999999999999
Q ss_pred eCCCCCccccEEEEE
Q psy1595 132 NTEGRGASQPIILAV 146 (147)
Q Consensus 132 n~~g~~~s~~~~l~v 146 (147)
+..|......+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 887766556677766
No 132
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.71 E-value=3.5e-07 Score=50.62 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=28.2
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.+|.|.++..+|+|.|.|.+.+...... ..+.|.|
T Consensus 73 ~asL~I~nl~~sDsG~Y~C~V~~g~~~~~-~~v~l~v 108 (112)
T cd05900 73 DATLEITELRSNDSGTYRCEVMHGIEDNY-DTVEVQV 108 (112)
T ss_pred CcEEEEeecccccCEEEEEEEecCCCCce-eEEEEEE
Confidence 46799999999999999999997654422 4566665
No 133
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.70 E-value=6e-07 Score=50.06 Aligned_cols=83 Identities=20% Similarity=0.439 Sum_probs=51.0
Q ss_pred CccceecCCcEEEEeEeecCCC---CceEEEEEC----Cee--cc---------cccc--ccEEe------eCCeEEEEe
Q psy1595 64 NPTDIKEGDDVYFECQVSANPR---AHRLLWFHN----DKE--IH---------HNVT--GGIIL------SNISLVLQK 117 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~---~~~~~w~~~----~~~--~~---------~~~~--~~~~~------~~~~l~i~~ 117 (147)
....+.+|+.+.|.|.....++ ...+.|++. +.. +. .... .+... .+.+|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 4556788999999998764321 123889752 111 10 0000 01111 134699999
Q ss_pred eccCCCeEEEEEEEeCCCC-CccccEEEEE
Q psy1595 118 VSRQSAGEYSCMAINTEGR-GASQPIILAV 146 (147)
Q Consensus 118 ~~~~d~g~y~C~~~n~~g~-~~s~~~~l~v 146 (147)
+..+|+|.|.|.+.|+.+. .....+.|.|
T Consensus 86 v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred CChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 9999999999999997653 2235566654
No 134
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.70 E-value=4.9e-07 Score=48.90 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=29.6
Q ss_pred CCeEEEEeeccCCCeEEEEEEEe-CCCCCccccEEEEEC
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAIN-TEGRGASQPIILAVK 147 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v~ 147 (147)
+.+|.|.++..+|+|.|.|.+.. +.|... ..+.|.|+
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~-~~~~l~V~ 98 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQGNRQ-KVTTLTVL 98 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCCcEE-EEEEEEeC
Confidence 35799999999999999999876 456644 67888774
No 135
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.68 E-value=9.3e-07 Score=47.53 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=30.3
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeC-CCCCccccEEEEEC
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINT-EGRGASQPIILAVK 147 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~-~g~~~s~~~~l~v~ 147 (147)
+.+|.|.++..+|.|.|+|.+... .|.. ...++|.|.
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~-~~~~~l~~~ 96 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNT-QSSTTVTVL 96 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCe-eEEEEEEEC
Confidence 568999999999999999998775 5664 467888874
No 136
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.66 E-value=3e-07 Score=50.36 Aligned_cols=68 Identities=19% Similarity=0.455 Sum_probs=45.5
Q ss_pred ceecCCcEEEEeEeecC-CCCceEEEEECCeecc---------------ccccccEE-e-----eCCeEEEEeeccCCCe
Q psy1595 67 DIKEGDDVYFECQVSAN-PRAHRLLWFHNDKEIH---------------HNVTGGII-L-----SNISLVLQKVSRQSAG 124 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~-~~~~~~~w~~~~~~~~---------------~~~~~~~~-~-----~~~~l~i~~~~~~d~g 124 (147)
.+..|+.+.|.|..... +... +.|++...... .....+.. . ...+|.|.++..+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~-v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYY-IFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcce-EEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 35679999999998875 4444 89998543100 00011111 1 1236999999999999
Q ss_pred EEEEEEEeCCC
Q psy1595 125 EYSCMAINTEG 135 (147)
Q Consensus 125 ~y~C~~~n~~g 135 (147)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999998654
No 137
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.64 E-value=1.1e-06 Score=46.01 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=42.8
Q ss_pred EEEEeEeec-CCCCceEEEEECCeecccccccc-------EEeeCCeEEEEeeccCCCeEEEEEEEeCCCC--CccccEE
Q psy1595 74 VYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGG-------IILSNISLVLQKVSRQSAGEYSCMAINTEGR--GASQPII 143 (147)
Q Consensus 74 ~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~--~~s~~~~ 143 (147)
+.|.|.+.+ +|.+ .+.|+++|+.+....... .......|.+.....++...|+|.+.|+... ..+....
T Consensus 2 ~~LtC~a~g~~P~~-~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~ 80 (83)
T cd07705 2 AKLRCTSSGSKPAA-NIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQR 80 (83)
T ss_pred EEEEEEecCccCCC-EeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEE
Confidence 578999987 4666 499999998765432110 1111122444333444567999999998733 3444445
Q ss_pred EEE
Q psy1595 144 LAV 146 (147)
Q Consensus 144 l~v 146 (147)
|.|
T Consensus 81 ~~~ 83 (83)
T cd07705 81 IEV 83 (83)
T ss_pred eeC
Confidence 443
No 138
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.64 E-value=1e-06 Score=48.74 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=28.4
Q ss_pred CeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 111 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
.+|.|.++..+|+|.|.|.+........ ..+.|+|
T Consensus 72 asL~I~~l~~sD~G~Y~C~v~~~~~~~~-~~v~l~V 106 (110)
T cd05878 72 ASLEISRLRSSDSGVYRCEVMHGIEDEQ-DTVPLEV 106 (110)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCcce-EEEEEEE
Confidence 4699999999999999999998654433 5677776
No 139
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.62 E-value=5.8e-07 Score=49.73 Aligned_cols=68 Identities=13% Similarity=0.313 Sum_probs=46.7
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCee--cc------------c-c-ccccEE-e----eCCeEEEEeeccCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKE--IH------------H-N-VTGGII-L----SNISLVLQKVSRQS 122 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~--~~------------~-~-~~~~~~-~----~~~~l~i~~~~~~d 122 (147)
....+.+|+.+.|.|...+ +... +.||+.... .. . . ...++. . ....|.|.++..+|
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~-v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D 83 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDN-MYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED 83 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCE-EEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence 4567788999999999877 5555 999996421 11 0 0 001111 1 12469999999999
Q ss_pred CeEEEEEEEeC
Q psy1595 123 AGEYSCMAINT 133 (147)
Q Consensus 123 ~g~y~C~~~n~ 133 (147)
+|.|.|.+.+.
T Consensus 84 sg~Y~Ca~~~~ 94 (110)
T cd05899 84 SAVYLCASSLG 94 (110)
T ss_pred CEEEEEEeeCC
Confidence 99999998864
No 140
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.62 E-value=2.4e-07 Score=50.91 Aligned_cols=69 Identities=17% Similarity=0.373 Sum_probs=45.3
Q ss_pred CccceecCCcEEEEeEeecCC-CCceEEEEECCe--ec---c-------ccccccEEee----CCeEEEEeeccCCCeEE
Q psy1595 64 NPTDIKEGDDVYFECQVSANP-RAHRLLWFHNDK--EI---H-------HNVTGGIILS----NISLVLQKVSRQSAGEY 126 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~-~~~~~~w~~~~~--~~---~-------~~~~~~~~~~----~~~l~i~~~~~~d~g~y 126 (147)
....+.+|+.+.|.|...+.. ... +.|++... .. . .....++... ...|.|.++..+|+|.|
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y 86 (106)
T cd04980 8 ATLSVSPGESATISCKASQSVSSNY-LAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY 86 (106)
T ss_pred CcEEECCCCCEEEEEEECCCCCCCc-EEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence 345678899999999987654 344 89998532 11 0 0000111111 13599999999999999
Q ss_pred EEEEEeC
Q psy1595 127 SCMAINT 133 (147)
Q Consensus 127 ~C~~~n~ 133 (147)
.|.+.+.
T Consensus 87 ~Ca~~~~ 93 (106)
T cd04980 87 YCQQYGT 93 (106)
T ss_pred EEEEeCC
Confidence 9998764
No 141
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.61 E-value=3.4e-07 Score=49.57 Aligned_cols=66 Identities=14% Similarity=0.351 Sum_probs=43.1
Q ss_pred ceecCCcEEEEeEeecC--CCCceEEEEECCeeccc------------cccccEEe----eCCeEEEEeeccCCCeEEEE
Q psy1595 67 DIKEGDDVYFECQVSAN--PRAHRLLWFHNDKEIHH------------NVTGGIIL----SNISLVLQKVSRQSAGEYSC 128 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~--~~~~~~~w~~~~~~~~~------------~~~~~~~~----~~~~l~i~~~~~~d~g~y~C 128 (147)
.+.+|+.+.|.|..... .... +.||+......+ ....++.. ....|.|.++..+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~-i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNY-VNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCC-EEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 35679999999998654 3444 899985431110 00011111 12359999999999999999
Q ss_pred EEEeC
Q psy1595 129 MAINT 133 (147)
Q Consensus 129 ~~~n~ 133 (147)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 98754
No 142
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.60 E-value=1.8e-06 Score=46.93 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=30.7
Q ss_pred CCeEEEEeeccCCCeEEEEEEEe-CCCCCccccEEEEEC
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAIN-TEGRGASQPIILAVK 147 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v~ 147 (147)
+.+|.|.++..+|+|.|.|.+.+ +.|.. ...+.|.|.
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~V~ 100 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNF-EAELVLTVW 100 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCe-eeEEEEEeC
Confidence 45799999999999999999998 45654 577888874
No 143
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.59 E-value=9.2e-07 Score=48.05 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=29.3
Q ss_pred CeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 111 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
.+|.|.++..+|+|.|.|.+.+..+. ....+.|+|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence 46999999999999999999987665 446677776
No 144
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.56 E-value=3.5e-06 Score=45.62 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=30.8
Q ss_pred CCeEEEEeeccCCCeEEEEEEEe-CCCCCccccEEEEE
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAIN-TEGRGASQPIILAV 146 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~s~~~~l~v 146 (147)
+.+|.|.++..+|.|.|+|.+.+ +.|. .+..+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence 46899999999999999999999 5665 457788887
No 145
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.56 E-value=2.9e-06 Score=47.42 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=49.9
Q ss_pred CccceecCCcEEEEeEeecCC---CCceEEEEECCe--e----cc--------c--ccc--ccEEe------eCCeEEEE
Q psy1595 64 NPTDIKEGDDVYFECQVSANP---RAHRLLWFHNDK--E----IH--------H--NVT--GGIIL------SNISLVLQ 116 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~---~~~~~~w~~~~~--~----~~--------~--~~~--~~~~~------~~~~l~i~ 116 (147)
....+..|+.+.|.|...... ....+.|++... . +. . ... .+... .+.+|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 345667899999999876432 112388976321 0 00 0 000 01111 12469999
Q ss_pred eeccCCCeEEEEEEEeCCCCC-ccccEEEEE
Q psy1595 117 KVSRQSAGEYSCMAINTEGRG-ASQPIILAV 146 (147)
Q Consensus 117 ~~~~~d~g~y~C~~~n~~g~~-~s~~~~l~v 146 (147)
++..+|+|.|.|.+.|.-... .+..+.|.|
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred eCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 999999999999999875432 223466654
No 146
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.55 E-value=1.9e-06 Score=45.04 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=37.8
Q ss_pred EEEEeEeec-CCCCceEEEEECCeeccccccccEE-------eeCCeEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 74 VYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGII-------LSNISLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 74 ~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
+.|.|.+.+ .|.+. +.|++++..+.... .... .....|.+.....++.+.|+|.+.|+...
T Consensus 2 ~~L~C~~~~~~P~~~-v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAAT-IRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCe-EEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 578999976 46664 99999998765321 1111 11122333333344456999999998754
No 147
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.53 E-value=5.9e-07 Score=48.27 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=44.6
Q ss_pred ecCCcEEEEeEeecC-CCCceEEEEECCeecccccc--ccEEee------CCeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 69 KEGDDVYFECQVSAN-PRAHRLLWFHNDKEIHHNVT--GGIILS------NISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 69 ~~g~~~~l~C~~~~~-~~~~~~~w~~~~~~~~~~~~--~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
..|+.+.|.|.+.+. |....+.|+++|..+..... ...... ...|.+......+.+.|+|.+.|...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468899999999986 54344999999987654321 011111 12354554445588999999999764
No 148
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.48 E-value=2.4e-06 Score=47.06 Aligned_cols=67 Identities=16% Similarity=0.443 Sum_probs=42.3
Q ss_pred ceecCCcEEEEeEeecCCCCceEEEEECCee---c--c----cc----------c-cccEE--ee----CCeEEEEeecc
Q psy1595 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKE---I--H----HN----------V-TGGII--LS----NISLVLQKVSR 120 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~---~--~----~~----------~-~~~~~--~~----~~~l~i~~~~~ 120 (147)
.+..|+.+.|.|..........+.|++.... . . .. . ..+.. .. ...|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 3577999999999865333223899985432 0 0 00 0 01111 11 12499999999
Q ss_pred CCCeEEEEEEEeC
Q psy1595 121 QSAGEYSCMAINT 133 (147)
Q Consensus 121 ~d~g~y~C~~~n~ 133 (147)
+|+|.|.|...+.
T Consensus 82 ~Dsg~YyCa~~~~ 94 (107)
T cd07700 82 EDSGTYFCMTVGS 94 (107)
T ss_pred HHCEEEEEeEcCC
Confidence 9999999997643
No 149
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.46 E-value=6.1e-06 Score=43.23 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=37.6
Q ss_pred EEEEeEeec-CCCCceEEEEECCeecccccccc-------EEeeCCeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 74 VYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGG-------IILSNISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 74 ~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
+.|.|.+.+ +|.. .+.|+++|..+....... .......|.+..-...+...|+|.+.|..-
T Consensus 2 ~~LtC~a~gf~P~~-~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAA-DIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCC-EEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 578999987 5554 599999999864322111 111112354443334445699999999763
No 150
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.46 E-value=5.3e-06 Score=49.36 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=53.8
Q ss_pred ccceecCCcEEEEeEee-cCCCCceEEEEECCeecc----------ccccccEEe-----eCCeEEEEeeccCCCeEEEE
Q psy1595 65 PTDIKEGDDVYFECQVS-ANPRAHRLLWFHNDKEIH----------HNVTGGIIL-----SNISLVLQKVSRQSAGEYSC 128 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~-~~~~~~~~~w~~~~~~~~----------~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C 128 (147)
...+.+|+.+.|.|... +...+. +.|.+....+. .....+... ....|.|.++.++|+|.|.|
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~q-VtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSIL-ITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccce-EEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 44678899999999974 444555 89988643211 111112211 34679999999999999999
Q ss_pred EEEeC-CCCCccccEEEEE
Q psy1595 129 MAINT-EGRGASQPIILAV 146 (147)
Q Consensus 129 ~~~n~-~g~~~s~~~~l~v 146 (147)
...-. .|...+....|.|
T Consensus 103 ~F~tfp~G~~~~gt~CLtV 121 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNV 121 (189)
T ss_pred EEEecCCCCCceeEEEEEE
Confidence 97664 4634556677766
No 151
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.42 E-value=3.5e-06 Score=47.05 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=45.2
Q ss_pred CccceecCCcEEEEeEeec--CCCCceEEEEECCe--ecc------c----------cccccEEe-----eCCeEEEEee
Q psy1595 64 NPTDIKEGDDVYFECQVSA--NPRAHRLLWFHNDK--EIH------H----------NVTGGIIL-----SNISLVLQKV 118 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~--~~~~~~~~w~~~~~--~~~------~----------~~~~~~~~-----~~~~l~i~~~ 118 (147)
....+.+|+.+.|.|...+ .+.+. +.|++... ... . ........ ....|.|.++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~-v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTY-IHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccE-EEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 4456778999999999876 45555 99999522 110 0 00111111 1236999999
Q ss_pred ccCCCeEEEEEEEe
Q psy1595 119 SRQSAGEYSCMAIN 132 (147)
Q Consensus 119 ~~~d~g~y~C~~~n 132 (147)
..+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 152
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.39 E-value=1.8e-06 Score=47.69 Aligned_cols=82 Identities=20% Similarity=0.450 Sum_probs=51.5
Q ss_pred CccceecCCcEEEEeEee-cCCCCceEEEEECCe---ec-cc-c--c----------ccc-EEee-----CCeEEEEeec
Q psy1595 64 NPTDIKEGDDVYFECQVS-ANPRAHRLLWFHNDK---EI-HH-N--V----------TGG-IILS-----NISLVLQKVS 119 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~-~~~~~~~~~w~~~~~---~~-~~-~--~----------~~~-~~~~-----~~~l~i~~~~ 119 (147)
....+.+|+.+.|.|... ...... +.|++... .. .. . . ..+ .... ..+|.|.++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~-v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSS-VYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSE-EEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CeEEEecCCCEEEEEEEeCCCCcce-EEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 455678899999999998 334444 89988432 10 00 0 0 000 0111 1359999999
Q ss_pred cCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 120 RQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 120 ~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
.+|+|.|.|.+...........+.|.|
T Consensus 88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999998873333334456654
No 153
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.39 E-value=2.3e-06 Score=44.48 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=36.8
Q ss_pred CCCCeeEEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEEEe
Q psy1595 5 SDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHF 51 (147)
Q Consensus 5 ~~~~~~~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~ 51 (147)
..++.+.+.|.|.+.++|+|..|+|+|.|+... .......|.|++
T Consensus 37 ~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~--~~~~~~~L~V~y 81 (82)
T cd05883 37 SRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVK--DLQTQRYLEVQY 81 (82)
T ss_pred CCCcEEEEEEEEECchhhCCCEEEEEEcCcccC--CceeeEEEEEEE
Confidence 456889999999999999999999999998752 356667777765
No 154
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.36 E-value=1.5e-05 Score=44.09 Aligned_cols=67 Identities=15% Similarity=0.349 Sum_probs=40.5
Q ss_pred ceecCCcEEEEeEeec-CCCCceEEEEECCeeccccccccE-------EeeCCeEEEEeeccCCCe-EEEEEEEeCC
Q psy1595 67 DIKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGI-------ILSNISLVLQKVSRQSAG-EYSCMAINTE 134 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g-~y~C~~~n~~ 134 (147)
....|+.+.|.|.+.+ +|....+.|++||+.+........ ......|.+.. ...|.+ .|+|.+.+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 3456788999999987 454445999999988653211111 11112233332 333434 5999999975
No 155
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.32 E-value=9.1e-06 Score=44.88 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=28.0
Q ss_pred CeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 111 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
.+|.|.++..+|+|.|.|.+...... ....+.|+|
T Consensus 72 asL~i~nv~~~D~G~Y~C~v~~g~~~-~~~~v~L~V 106 (110)
T cd05902 72 ASLVLSRLRYSDSGTYRCEVVLGIND-EQDTVPLEV 106 (110)
T ss_pred EEEEECCCCHHHCEEEEEEEEECCcc-cEEEEEEEE
Confidence 47999999999999999999985533 335677776
No 156
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.31 E-value=1.3e-05 Score=43.38 Aligned_cols=71 Identities=17% Similarity=0.392 Sum_probs=46.4
Q ss_pred ccceecCCcEEEEeEeec-CCCCc-eEEEEECCeecccccccc----EEeeCCeEEEEeeccCCCe-EEEEEEEeCCCC
Q psy1595 65 PTDIKEGDDVYFECQVSA-NPRAH-RLLWFHNDKEIHHNVTGG----IILSNISLVLQKVSRQSAG-EYSCMAINTEGR 136 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~-~~~~~-~~~w~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~ 136 (147)
...+.+|+.+.|.|.+.+ .|.+. .+.||+++..+....... ......++.+. +.++|.| .|+|.|.+.++.
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 345678999999999987 45553 259999998775432110 01112334443 5567766 899999998755
No 157
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.30 E-value=1.5e-05 Score=44.55 Aligned_cols=70 Identities=16% Similarity=0.411 Sum_probs=45.1
Q ss_pred CccceecCCcEEEEeEeecCCCCceEEEEECCe--ecc----------ccccccEEee------CCeEEEEeeccCCCeE
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDK--EIH----------HNVTGGIILS------NISLVLQKVSRQSAGE 125 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~--~~~----------~~~~~~~~~~------~~~l~i~~~~~~d~g~ 125 (147)
....+..|+.+.|.|..........+.|++... ... .....++... ...|.|.++..+|+|.
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~ 86 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK 86 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 455678899999999976532223389998432 110 0011112111 2359999999999999
Q ss_pred EEEEEEeC
Q psy1595 126 YSCMAINT 133 (147)
Q Consensus 126 y~C~~~n~ 133 (147)
|.|.+...
T Consensus 87 Y~C~~~~~ 94 (116)
T cd07706 87 YFCALSTL 94 (116)
T ss_pred EEEEEECC
Confidence 99999853
No 158
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.27 E-value=7.1e-06 Score=40.77 Aligned_cols=59 Identities=25% Similarity=0.558 Sum_probs=41.8
Q ss_pred EEEeEeecCCCCceEEEEECCeecccccc------ccEEeeCCeEEEEeeccCCCeEEEEEEEeCC
Q psy1595 75 YFECQVSANPRAHRLLWFHNDKEIHHNVT------GGIILSNISLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 75 ~l~C~~~~~~~~~~~~w~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
.+.|...+.+... +.|++++........ .........|.+.++...|.|.|.|.+.+..
T Consensus 2 ~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 2 TLTCLASGPPPPT-ITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEEecCCCCCc-EEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 5789988855565 999998876543221 1122234568888898999999999998865
No 159
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.24 E-value=1.2e-05 Score=43.54 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=43.4
Q ss_pred ceecCCcEEEEeEeecC-CCCceEEEEECCeecc-----------ccccccEEee------CCeEEEEeeccCCCeEEEE
Q psy1595 67 DIKEGDDVYFECQVSAN-PRAHRLLWFHNDKEIH-----------HNVTGGIILS------NISLVLQKVSRQSAGEYSC 128 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~-~~~~~~~w~~~~~~~~-----------~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C 128 (147)
.+.+|+.+.|.|..... .... +.|++...... .....+.... ...|.|.++..+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~-~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYE-KYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcE-eEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 45779999999987653 3343 88998643210 0001111111 1359999999999999999
Q ss_pred EEEeCC
Q psy1595 129 MAINTE 134 (147)
Q Consensus 129 ~~~n~~ 134 (147)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 988654
No 160
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.23 E-value=4.9e-05 Score=42.29 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=29.6
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
+.+|.|.++..+|+|.|.|.+.+...... ..+.|.|
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~-~~v~L~V 113 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQ-DTVSLDV 113 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccE-EEEEEEE
Confidence 45799999999999999999998765533 5677776
No 161
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.21 E-value=3.1e-05 Score=39.74 Aligned_cols=61 Identities=21% Similarity=0.403 Sum_probs=36.8
Q ss_pred EEEEeEeecC-CCCceEEEEECCeecccccccc-EE-eeC------CeEEEEeeccCCCeEEEEEEEeCC
Q psy1595 74 VYFECQVSAN-PRAHRLLWFHNDKEIHHNVTGG-II-LSN------ISLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 74 ~~l~C~~~~~-~~~~~~~w~~~~~~~~~~~~~~-~~-~~~------~~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
+.|.|.+.+. |...++.|+++|+.+....... .. ..+ ..|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 5789999874 5544599999998643221110 01 111 234444434456679999999875
No 162
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.21 E-value=7e-06 Score=42.54 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=30.2
Q ss_pred eeEEEEEeeeeecCCCCeEEEEEEecccccccccccEEE
Q psy1595 9 VTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWIL 47 (147)
Q Consensus 9 ~~~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l 47 (147)
+..+.|.+.+.++|+|..|+|+|.|+.+..........|
T Consensus 40 t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l 78 (80)
T cd05885 40 SVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSL 78 (80)
T ss_pred EEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEE
Confidence 577889999999999999999999998654334444444
No 163
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.18 E-value=7.6e-05 Score=40.20 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=25.9
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeC-CCCCccccEEE
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINT-EGRGASQPIIL 144 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~-~g~~~s~~~~l 144 (147)
+.+|.|.++..+|.|.|+|.+... .|... +.+.+
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~-~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWE-KVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeE-EEEEE
Confidence 467999999999999999999874 45533 44443
No 164
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.17 E-value=0.00013 Score=39.02 Aligned_cols=65 Identities=17% Similarity=0.359 Sum_probs=41.3
Q ss_pred ecCCcEEEEeEeec-CCCCceEEEEECCeeccccccccEE--eeCCeEEE---EeeccCCCeEEEEEEEeCC
Q psy1595 69 KEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVL---QKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 69 ~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~l~i---~~~~~~d~g~y~C~~~n~~ 134 (147)
..|....|.|.+.+ +|....+.|+++|+.+. ....... ..+.+..+ ..+..++...|.|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 44666789999998 56666689999999865 3221111 11222222 2334566678999999864
No 165
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.14 E-value=3.2e-05 Score=42.03 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=41.4
Q ss_pred ceecCCcEEEEeEeec-CCCCceEEEEECCeeccccccc--cEEeeCC------eEEEEeeccCCCeEEEEEEEeCC
Q psy1595 67 DIKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTG--GIILSNI------SLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
....++.+.|.|.+.+ +|....+.|+++|..+...... .....+. .|.+..-...+...|+|.+.+..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 3445677899999987 5545558999999886432110 0111122 23333333334568999999875
No 166
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.14 E-value=4.5e-05 Score=39.91 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=45.2
Q ss_pred cceecCCcEEEEeEeecCCC--CceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeC
Q psy1595 66 TDIKEGDDVYFECQVSANPR--AHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINT 133 (147)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 133 (147)
..+..|+++.|.|.....+. +. +.|+..+...... ......+|.+..+...|+|.++|.+...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~-i~w~~P~n~~~~~----~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFK-VEWRGPGNKSKQI----LNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCcc-EEEeCCCCcccee----ccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 35677999999999865443 35 8998765432210 1123467999999999999999999754
No 167
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.09 E-value=0.00014 Score=39.09 Aligned_cols=68 Identities=16% Similarity=0.321 Sum_probs=41.1
Q ss_pred ecCCcEEEEeEeec-CCCCceEEEEECCeecccccccc--EEeeCCeEEE---EeeccCCCeEEEEEEEeCCCC
Q psy1595 69 KEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGG--IILSNISLVL---QKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 69 ~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~--~~~~~~~l~i---~~~~~~d~g~y~C~~~n~~g~ 136 (147)
..++...|.|.+.+ +|...++.|+++|+.+....... ....+.++.+ -.+..++...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 35788999999998 55555589999998765421100 0111112111 123344556899999997543
No 168
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.07 E-value=0.00024 Score=38.12 Aligned_cols=64 Identities=17% Similarity=0.337 Sum_probs=38.2
Q ss_pred CCcEEEEeEeec-CCCCceEEEEECCeecccccccc--EEeeCCeEE---EEeeccCCCeEEEEEEEeCC
Q psy1595 71 GDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGG--IILSNISLV---LQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 71 g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~--~~~~~~~l~---i~~~~~~d~g~y~C~~~n~~ 134 (147)
+....|.|.+.+ +|....+.|.++|+.+....... ....+.+.. ...+.+++...|+|.+.+..
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 556799999998 56666689999998764321100 001111111 11233455569999999864
No 169
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.07 E-value=0.00029 Score=37.69 Aligned_cols=65 Identities=17% Similarity=0.387 Sum_probs=38.8
Q ss_pred CCcEEEEeEeecC-CCCceEEEEECCeeccccccc-cEE-eeCCeE---EEEeeccCCCeEEEEEEEeCCC
Q psy1595 71 GDDVYFECQVSAN-PRAHRLLWFHNDKEIHHNVTG-GII-LSNISL---VLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 71 g~~~~l~C~~~~~-~~~~~~~w~~~~~~~~~~~~~-~~~-~~~~~l---~i~~~~~~d~g~y~C~~~n~~g 135 (147)
++.+.|.|.+.+. |....+.|+++|......... ... ..+.++ ..-.+...+...|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 6789999999984 555458999998632221110 111 112221 1223444577899999998754
No 170
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.05 E-value=6.8e-05 Score=40.24 Aligned_cols=67 Identities=12% Similarity=0.250 Sum_probs=39.8
Q ss_pred cCCcEEEEeEeec-CCCCceEEEEECCeeccccccc--cEEeeC------CeEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 70 EGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTG--GIILSN------ISLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 70 ~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~--~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
..+.+.|.|.+.+ +|....+.|+++|..+...... .....+ ..|.+..-...+...|.|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 3466899999998 5655568999999875322110 011111 22433332233456899999997644
No 171
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.02 E-value=1.7e-05 Score=43.42 Aligned_cols=65 Identities=17% Similarity=0.367 Sum_probs=41.7
Q ss_pred ceecCCcEEEEeEeecCCCCceEEEEECCee--cc--------c--cc--------cccEEe----eCCeEEEEeeccCC
Q psy1595 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKE--IH--------H--NV--------TGGIIL----SNISLVLQKVSRQS 122 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~--~~--------~--~~--------~~~~~~----~~~~l~i~~~~~~d 122 (147)
.+..|+.+.|.|......... +.|++.... .. . .. ..+... ....|.|.++..+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~-v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTG-CSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCc-EEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 356799999999886543444 899985432 00 0 00 001110 11259999999999
Q ss_pred CeEEEEEEEe
Q psy1595 123 AGEYSCMAIN 132 (147)
Q Consensus 123 ~g~y~C~~~n 132 (147)
+|.|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999998764
No 172
>KOG3515|consensus
Probab=98.02 E-value=7.3e-06 Score=58.42 Aligned_cols=76 Identities=28% Similarity=0.526 Sum_probs=56.8
Q ss_pred ceecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEE
Q psy1595 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 145 (147)
.+..|+.+.|.|.+.+.|++..+.|++.++... .......+..|......++..+.|.|.+.|..+......+.+.
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~ 93 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH---GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILD 93 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc---cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeec
Confidence 778899999999999888877799999887665 2223334567777777777778999999998765444444443
No 173
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.01 E-value=2.4e-05 Score=41.45 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=29.8
Q ss_pred CeeEEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeCCc
Q psy1595 8 NVTVSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPR 54 (147)
Q Consensus 8 ~~~~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~ 54 (147)
....+.|.|.. ..+|.|. |+|.|.|..+. ....+.|.|..+|.
T Consensus 43 ~~~~s~L~I~~~~~~D~G~-YtC~A~N~~G~---~~~~~~L~V~~~P~ 86 (88)
T cd05735 43 DEVISTLQILPTVREDSGF-FSCHAINSYGE---DRGIIQLTVQEPPD 86 (88)
T ss_pred CcEEEEEEECCCCcccCEE-EEEEEEcCCCc---ceEEEEEEEeCCCC
Confidence 34457788875 4555555 69999999852 45668888887664
No 174
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.98 E-value=9.6e-05 Score=40.31 Aligned_cols=69 Identities=10% Similarity=0.220 Sum_probs=40.6
Q ss_pred eecCCcEEEEeEeec-CCCCceEEEEECCeeccccccc-----------cEEeeCCeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 68 IKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTG-----------GIILSNISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 68 ~~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
+..++.+.|.|.+.+ +|....+.|+++|+.+...... ........|.+..-...+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 344678999999998 4555457999999875422100 0111112243332222344589999999754
Q ss_pred C
Q psy1595 136 R 136 (147)
Q Consensus 136 ~ 136 (147)
.
T Consensus 93 ~ 93 (102)
T cd05768 93 P 93 (102)
T ss_pred C
Confidence 3
No 175
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.96 E-value=1e-05 Score=42.58 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=27.9
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEEEeCC
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVP 53 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p 53 (147)
+.|+|......+.+.|+|.|.+.. ...+....|.|..||
T Consensus 47 ~~L~I~nv~~~dsG~YtC~a~n~~---~~~~a~a~L~V~~pP 85 (85)
T cd05853 47 GDLMIRSIQLKHAGKYVCMVQTSV---DKLSAAADLIVRGPP 85 (85)
T ss_pred CcEEEecCCHHHCEEEEEEEEccc---CceEEEEEEEEecCC
Confidence 468887644444445699999987 346777888888765
No 176
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.95 E-value=0.00018 Score=40.31 Aligned_cols=69 Identities=17% Similarity=0.347 Sum_probs=43.5
Q ss_pred CccceecCCcEEEEeEeecCC-CCceEEEEECCeeccc-----------------cccccEEe--eC----CeEEEEeec
Q psy1595 64 NPTDIKEGDDVYFECQVSANP-RAHRLLWFHNDKEIHH-----------------NVTGGIIL--SN----ISLVLQKVS 119 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~-~~~~~~w~~~~~~~~~-----------------~~~~~~~~--~~----~~l~i~~~~ 119 (147)
....+..|+.+.|.|...... ....+.|++....-.+ ....++.. .. ..|.|.++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 456778899999999876432 1223899984321100 00111111 11 258999999
Q ss_pred cCCCeEEEEEEEe
Q psy1595 120 RQSAGEYSCMAIN 132 (147)
Q Consensus 120 ~~d~g~y~C~~~n 132 (147)
.+|+|.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999998864
No 177
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.87 E-value=0.00042 Score=36.22 Aligned_cols=64 Identities=30% Similarity=0.438 Sum_probs=41.1
Q ss_pred cCCcEEEEeEeec-CCCCceEEEEECCeeccccccccEEe--eCC------eEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 70 EGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGIIL--SNI------SLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 70 ~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~------~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
.++.+.|.|.+.+ +|....+.|+++|..+.......... .++ .|.+. ..+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 3888999999987 55555689999998765332111111 122 23333 55566999999997643
No 178
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.85 E-value=0.00014 Score=39.16 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=41.0
Q ss_pred ccceecCCcEEEEeEeecC--CCCceEEEEECCeeccc-cccccEEeeCCe------EEEEeeccCCCeEEEEEEEeCCC
Q psy1595 65 PTDIKEGDDVYFECQVSAN--PRAHRLLWFHNDKEIHH-NVTGGIILSNIS------LVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~--~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~------l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
...+..++.+.|.|.+.+. |+...+.|.++++.... .........+.+ |.+..-...+.-.|.|.+.+...
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 3345668899999999987 66656899998743211 111111111222 33332222234479999999753
No 179
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.84 E-value=0.00034 Score=38.97 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=41.5
Q ss_pred eecCCcEEEEeEeec-CCCCceEEEEECCeeccccccc---------cEEeeCCeEEEEeeccCC-CeEEEEEEEeCCCC
Q psy1595 68 IKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTG---------GIILSNISLVLQKVSRQS-AGEYSCMAINTEGR 136 (147)
Q Consensus 68 ~~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~ 136 (147)
+..++.+.|.|.+.+ +|...++.|+++|+.+...... ........|.+..-...+ ...|.|.+.+....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 345677899999987 4554458999999876532110 011112234444333333 45899999987544
No 180
>PHA03376 BARF1; Provisional
Probab=97.83 E-value=0.0004 Score=41.68 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=45.7
Q ss_pred EEe-eeeecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecCCCCceEEEE
Q psy1595 14 VPF-KPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWF 92 (147)
Q Consensus 14 l~~-~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~w~ 92 (147)
|.| +++.+|+|.| +|....... ..-...+|.+..|-...++.. .......+...+.|...+.|.|+ +.|+
T Consensus 89 LvI~~l~lSDdGtY-~C~fQkge~---~~~k~ehLt~V~~~~Lsv~a~----~~dFp~~~~~~i~C~sggfP~P~-~~Wl 159 (221)
T PHA03376 89 LVVTAANISHDGNY-LCRMKLGET---EVTKQEHLSVVKPLTLSVHSE----RSQFPDFSVLTVTCTVNAFPHPH-VQWL 159 (221)
T ss_pred EEEEeeeecCCceE-EEEEEcCCC---ceeeeeeeeeeecceEEEEec----cccCCCCCeeEEEEecCCcCCch-heec
Confidence 444 4578888885 999987542 222334555544333444321 11122256678899988899998 9999
Q ss_pred ECCe
Q psy1595 93 HNDK 96 (147)
Q Consensus 93 ~~~~ 96 (147)
.+..
T Consensus 160 e~~~ 163 (221)
T PHA03376 160 MPEG 163 (221)
T ss_pred cccC
Confidence 8754
No 181
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.82 E-value=0.00058 Score=36.79 Aligned_cols=68 Identities=10% Similarity=0.191 Sum_probs=38.5
Q ss_pred ceecCCcEEEEeEeec-CCCCceEEEEECCeecccccccc-EEeeCCeEEE---EeeccC-CCeEEEEEEEeCC
Q psy1595 67 DIKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGG-IILSNISLVL---QKVSRQ-SAGEYSCMAINTE 134 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~l~i---~~~~~~-d~g~y~C~~~n~~ 134 (147)
.+..+..+.|.|.+.+ +|....+.|.++|..+....... ....+.+..+ -.+..+ ....|+|.+.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence 3444567899999998 56665689999998754321111 0111112111 122333 2336999999954
No 182
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.80 E-value=0.00029 Score=39.57 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=43.7
Q ss_pred CccceecCCcEEEEeEeecCC-----CCceEEEEECCeec-----c---c-------cccccEEe----e--CCeEEEEe
Q psy1595 64 NPTDIKEGDDVYFECQVSANP-----RAHRLLWFHNDKEI-----H---H-------NVTGGIIL----S--NISLVLQK 117 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~-----~~~~~~w~~~~~~~-----~---~-------~~~~~~~~----~--~~~l~i~~ 117 (147)
....+..|+.+.|.|...... ....+.|++....- . . ....++.. . +.+|.|.+
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~ 86 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD 86 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence 445678899999999764321 12237899854211 0 0 00011111 1 23699999
Q ss_pred eccCCCeEEEEEEEeC
Q psy1595 118 VSRQSAGEYSCMAINT 133 (147)
Q Consensus 118 ~~~~d~g~y~C~~~n~ 133 (147)
+..+|+|.|.|.+...
T Consensus 87 l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 87 AQPEDSGKYFFRVELG 102 (119)
T ss_pred CChhhCeEEEEEEEcC
Confidence 9999999999998654
No 183
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.78 E-value=7.5e-05 Score=39.29 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=27.0
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeCC
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVP 53 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p 53 (147)
.+.|+|.. +..|.|. |+|.|.|..+ ..+..+.|.|..+|
T Consensus 46 ~~~L~I~~v~~~D~G~-YtC~A~n~~g---~~~~~~~L~V~~~P 85 (85)
T cd05854 46 IGDLVIVNAQLSHAGT-YTCTAQTVVD---SASASATLVVRGPP 85 (85)
T ss_pred EeEEEEccCChhhCeE-EEEEEecCCC---CEEEEEEEEEECCC
Confidence 35788875 5555555 6999999874 34667788887654
No 184
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.75 E-value=0.00024 Score=35.29 Aligned_cols=49 Identities=29% Similarity=0.504 Sum_probs=34.5
Q ss_pred CCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEe
Q psy1595 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 71 g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
.+.+.|.|... .. +.|++ |...... .+.+|.+.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----ts-i~W~k-G~~~~~~-------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TN-ITWKK-GKEILEV-------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----Cc-EEEec-Ccccccc-------cccEEeccCcccCCCcceEecCcc
Confidence 46788999652 33 99999 5544321 145677777777778999998876
No 185
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.70 E-value=0.00028 Score=37.34 Aligned_cols=64 Identities=17% Similarity=0.382 Sum_probs=38.6
Q ss_pred CCcEEEEeEee-cCCCCceEEEEECCeecccccccc-------EEeeCCeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 71 GDDVYFECQVS-ANPRAHRLLWFHNDKEIHHNVTGG-------IILSNISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 71 g~~~~l~C~~~-~~~~~~~~~w~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
++.+.+.|.+. ++|++. +.|+.++.......... .......|.+..-...+...++|.+.++..
T Consensus 14 ~~~~~~~C~s~~~~P~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQ-ITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EE-EEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeE-EEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 67999999876 577776 99999987762111110 111112344443333345689999999763
No 186
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.59 E-value=0.00012 Score=38.41 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=26.6
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeCC
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVP 53 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p 53 (147)
.+.|.|.. ...|.|. |+|.|.|..+ ..+..+.|.|..+|
T Consensus 46 ~~~L~I~~v~~~D~G~-Y~C~a~n~~g---~~~~~~~l~V~~pP 85 (85)
T cd04970 46 NGDLMIRNAQLKHAGK-YTCTAQTVVD---SLSASADLIVRGPP 85 (85)
T ss_pred cceEEEccCCHHhCee-eEEEEecCCC---cEEEEEEEEEECCC
Confidence 45678875 5555555 6999998774 34567788887654
No 187
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.57 E-value=0.00097 Score=36.08 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=39.4
Q ss_pred ceecCCcEEEEeEeec-C-CCCceEEEEECCeeccccccccEEeeCC------eEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 67 DIKEGDDVYFECQVSA-N-PRAHRLLWFHNDKEIHHNVTGGIILSNI------SLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~-~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
....+..+.|.|.+.+ + |....+.|.++|+. ...........+. .|.+..-.......|+|.+.+...
T Consensus 15 ~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 15 DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3445788999999998 4 44555899999875 1110000111122 244332222334579999999764
No 188
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.55 E-value=0.0023 Score=34.42 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=37.5
Q ss_pred cCCcEEEEeEeec-CCCCceEEEEECCeecccccc--ccEEeeCC------eEEEEeeccCCCeEEEEEEEeCC
Q psy1595 70 EGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVT--GGIILSNI------SLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 70 ~g~~~~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
.++.+.|.|.+.+ .|....+.|+++|+. ..... ......+. .|.+..-.......|.|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 3567899999998 565556899999986 32210 01111112 23333322223458999999865
No 189
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.55 E-value=0.0014 Score=35.33 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=38.4
Q ss_pred cceecCCcEEE-EeEee-cCCCCceEEEEECCeecccc----ccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCC
Q psy1595 66 TDIKEGDDVYF-ECQVS-ANPRAHRLLWFHNDKEIHHN----VTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135 (147)
Q Consensus 66 ~~~~~g~~~~l-~C~~~-~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 135 (147)
..+.+|+.+.+ .|.+. +.|++. +.|+.+....... ...........+.+......|.-.++|.+.++.-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~-IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAAD-VTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCE-eEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34566777777 88876 567776 9999874332110 0000111112344333333344589999999864
No 190
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=97.54 E-value=0.00022 Score=38.61 Aligned_cols=41 Identities=22% Similarity=0.101 Sum_probs=29.0
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeCCce
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRV 55 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~ 55 (147)
.+.|+|.. .++|.|. |+|.+.|..+ .....+.|.|...|.+
T Consensus 55 ~s~L~I~~~~~~D~G~-Ytc~a~N~~G---~~~~~~~l~V~~~P~p 96 (98)
T cd05762 55 SSKLTITEGQQEHCGC-YTLEVENKLG---SRQAQVNLTVVDKPDP 96 (98)
T ss_pred eeEEEECCCChhhCEE-EEEEEEcCCC---ceeEEEEEEEecCCCC
Confidence 46678875 5555555 5999999885 3455788888877643
No 191
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.50 E-value=0.00038 Score=36.24 Aligned_cols=39 Identities=36% Similarity=0.593 Sum_probs=28.1
Q ss_pred eeEEEEEeeeeecCCCCeEEEEEEecccccccccccEEEE
Q psy1595 9 VTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILN 48 (147)
Q Consensus 9 ~~~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~ 48 (147)
...+.|.+.+...|+++.|+|.|.|.... ......++|.
T Consensus 43 ~~~s~L~i~~~~~~~~~~y~C~a~n~~l~-~~~~~s~~l~ 81 (82)
T cd05759 43 TTVSTLPITPSDHDTGRTFTCRARNEALP-TGKETSVTLD 81 (82)
T ss_pred EEEEEEEEeCceecCCCEEEEEEcCccCC-CCcEEEEEEc
Confidence 35677888888888998899999997753 2344455543
No 192
>KOG3515|consensus
Probab=97.50 E-value=0.00081 Score=48.55 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=73.2
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEee--cCCCCceE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS--ANPRAHRL 89 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~~~~~~ 89 (147)
.+|.......|....|.|++.+.. +........+.+.++|.-.... .......+..+.+.|... +.|.+. +
T Consensus 59 ~~~~~~~~~~~~~~~~~c~a~ns~--~~~~~~~~~l~v~~~pa~~~~~----~e~~~~~~~vvqi~c~~~~~~~P~~n-l 131 (741)
T KOG3515|consen 59 PTLVTTGDVRDTVAELNCRAFNSV--GMPSRCPMILDVDYPPACLPEL----GEIFQVDKGVVQIICSAKVAGRPNPN-L 131 (741)
T ss_pred Cceeeecchhhhhhhhhhhhcccc--cCceecceeeccccCccccccc----cchhhhcCCeEEEEEeecCCCCCCcc-e
Confidence 345555666788888899998874 3445566777887776432222 333456677888888543 456665 9
Q ss_pred EEEECCeecccccc---c------cEE-eeCCeEEEEeeccCCCeEEEEEEEeCC
Q psy1595 90 LWFHNDKEIHHNVT---G------GII-LSNISLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 90 ~w~~~~~~~~~~~~---~------~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
.|..++........ . ... .....+.+......+.|.|+|.+.|..
T Consensus 132 rW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~ 186 (741)
T KOG3515|consen 132 RWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRN 186 (741)
T ss_pred eeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEccccccc
Confidence 99887765432210 0 001 223456777777788999999999954
No 193
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.50 E-value=0.0005 Score=35.40 Aligned_cols=20 Identities=25% Similarity=0.647 Sum_probs=17.5
Q ss_pred CeEEEEeeccCCCeEEEEEE
Q psy1595 111 ISLVLQKVSRQSAGEYSCMA 130 (147)
Q Consensus 111 ~~l~i~~~~~~d~g~y~C~~ 130 (147)
..|.|.++..+|+|.|.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEcCCCHHHCEEEEEcC
Confidence 35999999999999999963
No 194
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.42 E-value=0.00047 Score=35.97 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=25.7
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEeccccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLIAN 38 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~~~ 38 (147)
....+.|.+.+.++|+|..|+|++.|...+.
T Consensus 41 ~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 41 FTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 3467788888899999999999999987543
No 195
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.40 E-value=0.0023 Score=34.44 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=33.1
Q ss_pred cEEEEeEee-cCCCCceEEEEECCeeccccc----cccEEeeCCeEEEEeeccCCC-eEEEEEEEeCCC
Q psy1595 73 DVYFECQVS-ANPRAHRLLWFHNDKEIHHNV----TGGIILSNISLVLQKVSRQSA-GEYSCMAINTEG 135 (147)
Q Consensus 73 ~~~l~C~~~-~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~n~~g 135 (147)
...+.|.+. +.|++. +.|+++........ ........+.|.+.. .++|. ..|+|.+.|...
T Consensus 17 ~~va~C~s~~gkPaa~-IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P-~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 17 VPVAKCVSANGRPPAR-ISWSSTLGGNANTTSKENGDGTVTVTSEYSLVP-TPEANGKEVTCKVEHETL 83 (95)
T ss_pred cEEEEEEcCCCCCCcE-EEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEec-CHHHCCCEEEEEEeCccc
Confidence 457789887 567776 99998732211000 000001112344333 34444 489999999863
No 196
>PHA03376 BARF1; Provisional
Probab=97.38 E-value=0.0015 Score=39.33 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=42.5
Q ss_pred ccceecCCcEEEEeEeec---CCCCceEEEEECCe----ecc---------cccccc---EE---eeCCeEEEEeeccCC
Q psy1595 65 PTDIKEGDDVYFECQVSA---NPRAHRLLWFHNDK----EIH---------HNVTGG---II---LSNISLVLQKVSRQS 122 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~---~~~~~~~~w~~~~~----~~~---------~~~~~~---~~---~~~~~l~i~~~~~~d 122 (147)
+.....|+.+.|.|.-.. .+... +.|++.+. -+. +....+ .. .-+-+|.|.++..+|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~Mr-IrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIE-VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceE-EEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecC
Confidence 445667899999997652 12233 78999532 110 000000 11 012369999999999
Q ss_pred CeEEEEEEEeCC
Q psy1595 123 AGEYSCMAINTE 134 (147)
Q Consensus 123 ~g~y~C~~~n~~ 134 (147)
.|.|+|..+-..
T Consensus 99 dGtY~C~fQkge 110 (221)
T PHA03376 99 DGNYLCRMKLGE 110 (221)
T ss_pred CceEEEEEEcCC
Confidence 999999988654
No 197
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.37 E-value=0.00075 Score=35.32 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=28.5
Q ss_pred eeEEEEEeeeeecCCCCeEEEEEEecccccccccccEEE
Q psy1595 9 VTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWIL 47 (147)
Q Consensus 9 ~~~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l 47 (147)
...+.|.+.+..+|+|..|+|++.|+.......+....|
T Consensus 43 ~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~ 81 (83)
T cd07705 43 TVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRI 81 (83)
T ss_pred EEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEEe
Confidence 356888888899999999999999987543334444433
No 198
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=97.35 E-value=0.00082 Score=36.59 Aligned_cols=38 Identities=24% Similarity=0.137 Sum_probs=25.3
Q ss_pred eEEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 10 TVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 10 ~~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
..+.|.|...+.++.+.|+|.|.|..+ ..+..+.|.|.
T Consensus 63 ~~~~L~i~~v~~~D~G~Ytc~A~N~~G---~~~~t~~L~V~ 100 (101)
T cd04975 63 YVSELKLVRLKESEAGTYTFLASNSDA---SKSLTFELYVN 100 (101)
T ss_pred EEEEEEEeecCHhhCeeEEEEEECCCc---cEEEEEEEEEE
Confidence 457788876555555557999999884 23445555553
No 199
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.34 E-value=0.00091 Score=33.02 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=34.4
Q ss_pred ecCCcEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEe
Q psy1595 69 KEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 69 ~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
..|..+.|.|+... .. +.|.++++.... ....+.+.+.. +++|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~---~~-i~W~~n~~~~~g--------~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSG---DD-IKWKKNDQVSQG--------SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCC---CC-ceEEeCCccCCC--------CCceEEeeccC-CCCceEEEEeCC
Confidence 45888999997542 23 899999854432 11234444555 789999999864
No 200
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.30 E-value=0.00068 Score=36.45 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=25.1
Q ss_pred eeEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 9 VTVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 9 ~~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
...+.|.+.+.++|+|..|+|++.|...
T Consensus 56 tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 56 TVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred EEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 5788999999999999999999999763
No 201
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=97.29 E-value=0.0006 Score=36.74 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=23.1
Q ss_pred EEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
.+.|.|......|.+.|+|.|.|..+ ...+..+.|.|
T Consensus 59 ~~~L~I~~v~~~D~G~YtC~A~N~~~--g~~~~s~~l~v 95 (96)
T cd05865 59 SSTLTIYNANIDDAGIYKCVVSNEDE--GESEATVNVKI 95 (96)
T ss_pred ceEEEEeccChhhCEEEEEEEEcCCC--CcEEEEEEEEE
Confidence 36788876444555556999999862 23344555554
No 202
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.27 E-value=0.0046 Score=33.26 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=37.5
Q ss_pred CcEEEEeEee-cCCCCceEEEEECCeeccc-c---ccccEEeeCCeEEEEeeccCCCe-EEEEEEEeCCCC-CccccEEE
Q psy1595 72 DDVYFECQVS-ANPRAHRLLWFHNDKEIHH-N---VTGGIILSNISLVLQKVSRQSAG-EYSCMAINTEGR-GASQPIIL 144 (147)
Q Consensus 72 ~~~~l~C~~~-~~~~~~~~~w~~~~~~~~~-~---~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~-~~s~~~~l 144 (147)
....+.|.+. +.|++. +.|+++...... . .........+.|.+.. .++|.| .|+|.+.|+... .....+.|
T Consensus 16 ~~~va~C~s~~gkP~a~-ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p-~~~d~G~~~tC~v~h~~l~~~~~~~~~L 93 (95)
T cd05719 16 PVTVATCVSANGKPPAT-ISWETTLGGEAETQSKENPNGTVTVTSEYRLVP-SREANGKELTCVVSHPTLQEPQRFSVTL 93 (95)
T ss_pred ccEEEEEECCCCcCCCE-EEEEeCCCCcceeEeecCCCCCEEEEEEEEEec-CHHHCCCEEEEEEeCcccCCCeEEEEEe
Confidence 4556789985 677776 999997211110 0 0000011112344433 344544 899999998633 23233444
Q ss_pred E
Q psy1595 145 A 145 (147)
Q Consensus 145 ~ 145 (147)
.
T Consensus 94 ~ 94 (95)
T cd05719 94 N 94 (95)
T ss_pred e
Confidence 3
No 203
>KOG1480|consensus
Probab=97.25 E-value=0.00014 Score=51.96 Aligned_cols=79 Identities=22% Similarity=0.469 Sum_probs=58.1
Q ss_pred ccceecCCcEEEEeEee-cCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEE
Q psy1595 65 PTDIKEGDDVYFECQVS-ANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~ 143 (147)
...+..+....+.|... +.|... +.|++++..+.+ ...........+.+..+...|.|+|+|.+.|..+...+..+.
T Consensus 138 ~q~V~~~s~~~l~cr~pe~~paae-~~w~k~e~~~~p-d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~ 215 (909)
T KOG1480|consen 138 GQEVQEETTLQLPCRPPEGDPKAE-VEWLKNEVVIDP-DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPAT 215 (909)
T ss_pred hheecccccccccccCcccchhhh-hhccccCCCCCc-cccchhhhcCCccccchhhhhcccceeeeehhhccccccceE
Confidence 44566677778887754 667776 899999987766 233344456779999999999999999999988776655554
Q ss_pred EE
Q psy1595 144 LA 145 (147)
Q Consensus 144 l~ 145 (147)
+.
T Consensus 216 v~ 217 (909)
T KOG1480|consen 216 VQ 217 (909)
T ss_pred EE
Confidence 43
No 204
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=97.25 E-value=0.0012 Score=36.40 Aligned_cols=39 Identities=26% Similarity=0.126 Sum_probs=27.2
Q ss_pred EEEEEeeee-e-cCCCCeEEEEEEecccccccccccEEEEEEeCC
Q psy1595 11 VSYVPFKPS-A-DDDNSKLTCRAENTLIANSSMEDTWILNVHFVP 53 (147)
Q Consensus 11 ~s~l~~~~~-~-~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p 53 (147)
.+.|.|... . +|.| .|+|.|.|..+. ....+.|.+..+|
T Consensus 68 ~s~L~I~~v~~~~D~G-~Y~C~A~N~~G~---~~~~i~L~~~~~p 108 (109)
T cd05773 68 TSILTIINVSAALDYA-LFTCTAHNSLGE---DSLDIQLVSTSRP 108 (109)
T ss_pred eeEEEECcCCccCCCE-EEEEEEEeCCcc---CcEEEEEEecCCC
Confidence 467888753 3 5666 579999998852 3666777777655
No 205
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.22 E-value=0.001 Score=35.79 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.8
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
....+.|.+.+.++|+|..|+|++.|...
T Consensus 55 ~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 55 VTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred EEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 55788999999999999999999998764
No 206
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.21 E-value=0.00038 Score=34.88 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=17.8
Q ss_pred EEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.....+|.+.|+|.|.|..+
T Consensus 30 ~~~L~i~~v~~~D~G~YtC~a~N~~g 55 (67)
T cd05863 30 QHSLQIKDVTEASAGTYTLVLWNSAA 55 (67)
T ss_pred cCEEEECCCCHHHCEEEEEEEEECCc
Confidence 45677875444455556999999874
No 207
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=97.13 E-value=0.0022 Score=33.40 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=18.3
Q ss_pred eEEEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 10 TVSYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 10 ~~s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
..+.|.|.. ..+|.|. |+|.|.|..+
T Consensus 44 ~~~~L~I~~~~~~D~G~-YtC~A~N~~G 70 (81)
T cd04971 44 YHGCLQFDNPTHVNNGN-YTLVASNEYG 70 (81)
T ss_pred cEEEEEECCCCcccCeE-EEEEEEeCCC
Confidence 345688865 5555555 6999999885
No 208
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.12 E-value=0.0011 Score=36.13 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=23.6
Q ss_pred eEEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 10 TVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 10 ~~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
..+.|.|.....+|.+.|+|.|.|..+ ..+..+.|.|
T Consensus 63 ~~s~L~I~~v~~~D~G~Ytc~A~N~~g---~~~~t~~l~V 99 (101)
T cd05859 63 YVSKLKLIRAKEEDSGLYTALAQNEDA---VKSYTFALQI 99 (101)
T ss_pred eccEEEEeeCCHHHCEEEEEEEEcCCc---eEEEEEEEEE
Confidence 356788875544555556999999874 2344555554
No 209
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.11 E-value=0.0061 Score=32.87 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=40.6
Q ss_pred ccceecCCcEEEEeEeec-CCC-CceEEEEECCeecccccccc----EEe--eCCeEEEEeeccCCCe-EEEEEEEeCCC
Q psy1595 65 PTDIKEGDDVYFECQVSA-NPR-AHRLLWFHNDKEIHHNVTGG----IIL--SNISLVLQKVSRQSAG-EYSCMAINTEG 135 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~-~~~-~~~~~w~~~~~~~~~~~~~~----~~~--~~~~l~i~~~~~~d~g-~y~C~~~n~~g 135 (147)
......|..+.+.|.+.+ .|. ...+.|++....+....-.. ... ....+.+. ..++|.| .|.|.|.-..+
T Consensus 9 ~~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtft-ptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 9 SGPLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFT-PTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred cCcccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEe-cchhhCCcEEEEEEEEeec
Confidence 334578999999999986 444 12378987654433221000 000 11223333 3578877 99999987654
No 210
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=97.10 E-value=0.0011 Score=33.81 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=23.1
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
+.|.|.....++.+.|.|.|.|..+ ...+..+.|.|
T Consensus 38 g~L~i~~~~~~D~G~Y~C~a~N~~G--~~~s~~a~l~v 73 (74)
T cd05738 38 GALQIENSEESDQGKYECVATNSAG--TRYSAPANLYV 73 (74)
T ss_pred cEEEECCCChhhCEEEEEEEECCCC--ceEcccEEEEE
Confidence 3577765444555557999999884 44555566654
No 211
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.10 E-value=0.0014 Score=34.94 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=22.3
Q ss_pred eEEEEEeee-eecCCCCeEEEEEEecccccccccccEEEE
Q psy1595 10 TVSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILN 48 (147)
Q Consensus 10 ~~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~ 48 (147)
..+.|+|.. ..+|.| .|+|.|.|..+ ......+.|.
T Consensus 55 ~~~~L~I~~v~~~D~G-~Y~C~A~N~~g--~~~~~sv~l~ 91 (92)
T cd04977 55 VRSTLTIYNANIEDAG-IYKCVATDAKG--TESEATVNLK 91 (92)
T ss_pred CEEEEEEecCCcccCE-EEEEEEEcCCC--CcceeEEEEE
Confidence 345788875 555555 56999999764 2334444443
No 212
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.09 E-value=0.0031 Score=33.02 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=25.3
Q ss_pred eeEEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 9 VTVSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 9 ~~~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
...+.|.|.. ..+|.|. |.|.+.+.... ......+.|.|+
T Consensus 43 ~~~s~L~I~~~~~~DsG~-Y~C~a~n~~~~-~~~~~sv~i~V~ 83 (84)
T cd05861 43 TLRSTLTFPHATVEDSGT-YECAAHESTQD-QKAFKKVNITVH 83 (84)
T ss_pred EEEEEEEECCCCcCCCEE-EEEEEEECccC-cceeEEEEEEEe
Confidence 3467888875 5555555 69999976531 234556666664
No 213
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.09 E-value=0.0021 Score=33.65 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=25.1
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEecccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLIA 37 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~~ 37 (147)
....+.|.+.+..+|+|..|+|++.|....
T Consensus 42 ~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 42 FTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 357788888888899999999999998753
No 214
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.08 E-value=0.0011 Score=35.43 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=22.7
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
+.|.|......|.+.|+|.|.|..+ ....+.+.|.+
T Consensus 56 ~~L~I~~v~~~D~G~Y~C~A~N~~G--~~~~~~i~l~~ 91 (92)
T cd05866 56 SRLTIYNANIEDAGIYRCQATDAKG--QTQEATVVLEI 91 (92)
T ss_pred eEEEEecCChHHCEEEEEEEEcCCC--cEEEEEEEEEE
Confidence 4688875444444446999999874 33455555554
No 215
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.07 E-value=0.001 Score=34.32 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=22.0
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILN 48 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~ 48 (147)
+.|.|.....++.+.|.|.|.|..+ ...+..+.|.
T Consensus 44 ~~L~I~~v~~~D~G~Y~C~a~N~~G--~~~s~~~~l~ 78 (79)
T cd05734 44 GSLLIKHVLEEDSGYYLCKVSNDVG--ADASKSMVLT 78 (79)
T ss_pred CeEEECcCCcccCEEEEEEEEeCCC--CCCceEEEEe
Confidence 5677765444444556999999875 3445545444
No 216
>PHA02633 hypothetical protein; Provisional
Probab=97.06 E-value=0.0014 Score=31.91 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=25.6
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
...|.|.++..+|+|.|.|...|..--.. -.+.|+|
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~-~si~l~V 52 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDM-MKFDLCI 52 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEE-EEEEEEE
Confidence 34588889999999999999987643222 2355554
No 217
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=96.98 E-value=0.00082 Score=33.96 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=16.8
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
..|.|.. ..+|.|. |+|.|.|..+
T Consensus 34 ~~L~I~~v~~~D~G~-YtC~a~N~~G 58 (70)
T cd05864 34 VHLTIYEVTEKDAGN-YTVVLTNPIT 58 (70)
T ss_pred CEEEECcCCHHHCEE-EEEEEEECCC
Confidence 3577765 5555555 6999999885
No 218
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=96.95 E-value=0.0035 Score=33.00 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=24.7
Q ss_pred eeEEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 9 VTVSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 9 ~~~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
...+.|.|.. ...|.|. |+|.|.+..+ .......|.|+
T Consensus 47 ~~~s~L~I~~~~~~DsG~-Y~C~a~n~~~---~~~~~t~~~V~ 85 (86)
T cd05862 47 ELSSTLTIENVTLSDLGR-YTCTASSGQM---IAKNSTIVIVH 85 (86)
T ss_pred eeeeEEEEecCCcccCEE-EEEEEeecce---EecccEEEEEe
Confidence 3567899875 5556665 6999998663 23445555554
No 219
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=96.92 E-value=0.0027 Score=33.17 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.7
Q ss_pred eeEEEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 9 VTVSYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 9 ~~~s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
...+.|+|.. ..+|.|. |+|.+.+..+
T Consensus 46 ~~~s~L~I~~v~~~DsG~-Y~C~a~n~~~ 73 (84)
T cd05742 46 ELSSTLTIPNATLKDSGT-YTCAASSGTM 73 (84)
T ss_pred EEEEEEEECCCChhhCEE-EEEEEccCCC
Confidence 4567888875 5656665 6999998874
No 220
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=96.91 E-value=0.0013 Score=33.72 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=17.0
Q ss_pred EEEeeeeecCCCCeEEEEEEeccc
Q psy1595 13 YVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 13 ~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
.|.|.....+|.+.|+|.|.|..+
T Consensus 42 ~L~I~~v~~~D~G~Y~C~A~N~~G 65 (75)
T cd05893 42 CLLIQGATKEDAGWYTVSAKNEAG 65 (75)
T ss_pred EEEECCCCHHHCEEEEEEEEcCCC
Confidence 477775544555556999999885
No 221
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=96.91 E-value=0.0016 Score=33.36 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=16.9
Q ss_pred EEEeeeeecCCCCeEEEEEEeccc
Q psy1595 13 YVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 13 ~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
.|.|.....+|.+.|+|.|.|..+
T Consensus 42 ~L~I~~~~~~D~G~Y~C~A~N~~G 65 (75)
T cd05892 42 TLLIKNVNKKDAGWYTVSAVNEAG 65 (75)
T ss_pred EEEECCCChhhCEEEEEEEEcCcC
Confidence 588875444444456999999885
No 222
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=96.91 E-value=0.0016 Score=34.69 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=23.2
Q ss_pred EEEeee-eecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 13 YVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 13 ~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
.|.|.. .++|.|. |.|.|.|..+ ...+..+.|.|
T Consensus 56 ~L~I~~v~~~D~G~-Y~C~a~N~~G--~~~S~~~~L~V 90 (91)
T cd05740 56 TLTFNNVTRSDTGH-YQCEASNEVS--NMTSDPYILNV 90 (91)
T ss_pred EEEECcCChhhCEE-EEEEEEcCCC--CEEeeeEEEEe
Confidence 577764 5566655 5999999884 44566666655
No 223
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=96.87 E-value=0.0015 Score=33.24 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=17.0
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. ..+|.| .|+|.|.|..+
T Consensus 40 ~~L~I~~v~~~D~G-~Y~C~A~N~~G 64 (74)
T cd05745 40 GTLRISRVALHDQG-QYECQAVNIVG 64 (74)
T ss_pred CeEEEeeCCHHhCE-EEEEEEEeCCC
Confidence 4577775 455555 56999999874
No 224
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=96.86 E-value=0.0026 Score=32.30 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=17.6
Q ss_pred EEEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.. ..+|.| .|+|.|.|..+
T Consensus 39 ~~~L~I~~~~~~D~G-~Y~C~a~N~~G 64 (74)
T cd05748 39 STSLVIKNAERSDSG-KYTLTLKNPAG 64 (74)
T ss_pred eEEEEECCCCcCcCE-EEEEEEECCCc
Confidence 45677865 555555 56999999874
No 225
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.86 E-value=0.0029 Score=32.24 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=21.7
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
+.|.|.....+|.+.|.|.|.|..+. .+..+.|.|
T Consensus 40 ~~L~I~~~~~~D~G~Y~C~A~N~~G~---~~~~~~l~V 74 (75)
T cd05763 40 DVFFIVDVKIEDTGVYSCTAQNTAGS---ISANATLTV 74 (75)
T ss_pred CEEEEeeCCcccCEEEEEEEEcCCCE---EEeeEEEEE
Confidence 35777654444455579999998742 344555554
No 226
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=96.86 E-value=0.0026 Score=33.74 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=21.9
Q ss_pred EEEEeee-eecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
..|.|.. ..+|.|. |+|.|.|..+. ....+.|.|
T Consensus 55 ~~L~I~~v~~~D~G~-Y~C~A~N~~G~---~~~sa~L~V 89 (90)
T cd04974 55 EVLYLRNVSFDDAGE-YTCLAGNSIGP---SHHSAWLTV 89 (90)
T ss_pred ceEEEeccccccCcE-EEEEeecccCc---ccCCEEEEe
Confidence 3566764 5555555 69999998852 344556655
No 227
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=96.86 E-value=0.0032 Score=33.89 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=18.5
Q ss_pred EEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.....++.+.|+|.|.|..+
T Consensus 62 ~~~L~I~~v~~~D~G~Y~C~A~N~~G 87 (97)
T cd05869 62 VSSLTLKYIQYTDAGEYLCTASNTIG 87 (97)
T ss_pred EEEEEEecCccCcCEEEEEEEecCCC
Confidence 36788876444455556999999885
No 228
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=96.83 E-value=0.0012 Score=33.45 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=16.5
Q ss_pred EEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.....++.+.|+|.|.|..+
T Consensus 35 ~~L~I~~v~~~D~G~YtC~a~N~~g 59 (71)
T cd04976 35 HSLTIKDVTEEDAGNYTVVLTNKQA 59 (71)
T ss_pred CEEEECcCCHHHCEEEEEEEEcCCc
Confidence 4577765444444446999999774
No 229
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.81 E-value=0.0015 Score=33.24 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=16.9
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. ..+|.|. |.|.|.|..+
T Consensus 39 g~L~I~~v~~~D~G~-Y~C~A~N~~G 63 (73)
T cd05852 39 GSLEILNITKLDEGS-YTCFAENNRG 63 (73)
T ss_pred CEEEECcCChhHCEE-EEEEEECCCC
Confidence 3577765 5555555 6999999884
No 230
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=96.81 E-value=0.0025 Score=33.30 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=21.3
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILN 48 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~ 48 (147)
+.|.|.....++.+.|+|.+.|..+ ...+..+.|.
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~N~~G--~~~s~~~~l~ 85 (86)
T cd05724 51 GNLLIAEARKSDEGTYKCVATNMVG--ERESAAARLS 85 (86)
T ss_pred CEEEEeECCcccCEEEEEEEEeccC--ceeeeeEEEE
Confidence 4577775444444456999999874 3344444443
No 231
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.80 E-value=0.0021 Score=33.17 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=17.5
Q ss_pred EEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.....++.+.|.|.+.|..+
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G 71 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGG 71 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCc
Confidence 4677775444455556999999874
No 232
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.80 E-value=0.0023 Score=32.31 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=21.5
Q ss_pred EEEEeee-eecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
..|.|.. ..+|.|. |+|.|.|..+. .+..+.|.|
T Consensus 36 ~~L~I~~v~~~D~G~-Y~C~a~N~~G~---~~~~~~l~V 70 (71)
T cd05876 36 KTLQLDNVLESDDGE-YVCTAENSEGS---ARHHYTVTV 70 (71)
T ss_pred CEEEEcccCHHhCEE-EEEEEEcCCCe---EEEEEEEEE
Confidence 4677764 5555555 69999998852 344455544
No 233
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=96.77 E-value=0.0031 Score=33.72 Aligned_cols=35 Identities=29% Similarity=0.248 Sum_probs=23.3
Q ss_pred EEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
+.|.|.. ..+|.| .|+|.|.|..+. ....+.|.|.
T Consensus 58 ~~L~I~~v~~~D~G-~Y~C~a~N~~G~---~~~~~~L~V~ 93 (95)
T cd05730 58 SEMTILDVDKLDEA-EYTCIAENKAGE---QEAEIHLKVF 93 (95)
T ss_pred CEEEECCCChhhCE-EEEEEEEcCCCe---EEEEEEEEEE
Confidence 4577765 555555 569999998852 3556666665
No 234
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=96.77 E-value=0.0028 Score=32.42 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=17.1
Q ss_pred EEEeeeeecCCCCeEEEEEEeccc
Q psy1595 13 YVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 13 ~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
.|.|.....++.+.|+|.|.|..+
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G 65 (75)
T cd05744 42 CLLIQNANKEDAGWYTVSAVNEAG 65 (75)
T ss_pred EEEECCCCcccCEEEEEEEEcCCC
Confidence 477775554555556999999885
No 235
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=96.76 E-value=0.0026 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=22.1
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
+.|.|.....++.+.|+|.|.|..+. ....+.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~---~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGI---SHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCc---ccceEEEEE
Confidence 56888754444555569999998852 334445544
No 236
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=96.75 E-value=0.0042 Score=32.89 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=24.3
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEEEe
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHF 51 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~ 51 (147)
+.|.|.....++.+.|+|.+.|..+ .....+.|.|..
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~N~~G---~~~~~~~l~V~~ 83 (90)
T cd05726 47 GDLTITNVQRSDVGYYICQTLNVAG---SILTKAYLEVTD 83 (90)
T ss_pred CeEEEeeCChhhCEEEEEEEEcCCC---ceEEEEEEEEee
Confidence 4588875444444456999999874 234567777764
No 237
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=96.75 E-value=0.0039 Score=33.35 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=18.3
Q ss_pred EEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.....++.+.|.|.|.|..+
T Consensus 61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G 86 (96)
T cd05732 61 VSSLTLKDVQLTDAGRYDCEASNRIG 86 (96)
T ss_pred EEEEEECcCCcCcCEEeEEEEEeCCC
Confidence 45788876444444457999999885
No 238
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=96.74 E-value=0.0048 Score=31.68 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=22.7
Q ss_pred EEEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 13 YVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 13 ~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
.|.|.. ..+|.|. |.|.|.|..+. ...+..++|.|.
T Consensus 39 ~L~I~~~~~~D~G~-Y~C~a~N~~G~-~~s~~~~~l~v~ 75 (77)
T cd05760 39 TLTLRSAGPDDSGL-YYCCAHNAFGS-VCSSQNFTLSII 75 (77)
T ss_pred EEEEeeCCcccCEE-EEEEEEeCCCe-EeeCceEEEEEe
Confidence 577764 5555555 69999998752 123445666654
No 239
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=96.71 E-value=0.005 Score=31.93 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=18.6
Q ss_pred eEEEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 10 TVSYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 10 ~~s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
..+.|.|.. ..+|.|. |+|.|+|..+
T Consensus 42 ~~~~L~i~~~~~~D~G~-YtC~A~N~~G 68 (79)
T cd05855 42 YHGCLQLDNPTHLNNGI-YTLVAKNEYG 68 (79)
T ss_pred eEEEEEECCCCcccCEE-EEEEEEcCCc
Confidence 345788875 5555555 6999999885
No 240
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=96.71 E-value=0.0024 Score=31.94 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=16.9
Q ss_pred EEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
..|.|.....++.+.|+|.+.|..+
T Consensus 35 ~~L~I~~v~~~D~G~Y~C~a~N~~G 59 (69)
T cd05725 35 KSLKIRNVTAGDEGSYTCEAENMVG 59 (69)
T ss_pred CEEEECcCChhHCEEEEEEEEcCCC
Confidence 3577775444444456999999874
No 241
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=96.70 E-value=0.0022 Score=32.20 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=16.8
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. ..+|.| .|+|.|.|..+
T Consensus 36 ~~L~i~~v~~~D~G-~Y~C~a~N~~G 60 (71)
T cd05731 36 KTLKIDNVSEEDDG-EYRCTASNSLG 60 (71)
T ss_pred CEEEECCCCHHHCE-EEEEEEEeCCc
Confidence 4677765 455555 56999999874
No 242
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.69 E-value=0.1 Score=35.63 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=51.3
Q ss_pred EEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecCCC--CceEE
Q psy1595 14 VPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPR--AHRLL 90 (147)
Q Consensus 14 l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~ 90 (147)
|+|.. +...+|- |+.+..+..+. ......+++..+.+|...+ ....+..|+...-.|.+..+.+ ...+.
T Consensus 184 L~I~slt~aTeGv-Y~Wr~~~~~~~-~~~~~~VtV~~yr~Psvsv------~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lr 255 (466)
T PHA03270 184 LVIQELTLATQGM-YYWARGPADRP-HRYGTWTRVRMFRRPSLSI------RPHAVLEGEPFGATCVAANYYPGDRAAFR 255 (466)
T ss_pred EEEEEcccccceE-EEEEEecCCCc-eeeeeEEEEEEecCCcccc------cCCccccCCCceEEEEeeeecCCCceEEE
Confidence 66664 4444555 57776655431 2344556777777776543 4556788999999999986433 23478
Q ss_pred EEECCeecc
Q psy1595 91 WFHNDKEIH 99 (147)
Q Consensus 91 w~~~~~~~~ 99 (147)
||+|+..+.
T Consensus 256 Wf~ng~~V~ 264 (466)
T PHA03270 256 WFEGGDEVF 264 (466)
T ss_pred EEeCCcccc
Confidence 999998775
No 243
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=96.69 E-value=0.0045 Score=32.59 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=18.4
Q ss_pred EEEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.. .++|.|. |+|.|.|..+
T Consensus 51 ~~~L~I~~~~~~D~G~-Y~c~a~N~~G 76 (86)
T cd05894 51 LSSFVIEGAEREDEGV-YTITVTNPVG 76 (86)
T ss_pred eEEEEECCCccCcCEE-EEEEEEeCCC
Confidence 45688875 5666665 5999999885
No 244
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.68 E-value=0.036 Score=30.87 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=43.0
Q ss_pred CccceecCCcEEEEeEeecCCCCc--eEEEEECCeec-cc------------ccccc-EEee-----CCeEEEEeeccCC
Q psy1595 64 NPTDIKEGDDVYFECQVSANPRAH--RLLWFHNDKEI-HH------------NVTGG-IILS-----NISLVLQKVSRQS 122 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~~~~~--~~~w~~~~~~~-~~------------~~~~~-~~~~-----~~~l~i~~~~~~d 122 (147)
....+..|+.+.|.|...+..... .+.|+++.... .. ....+ .... .-.|.+.++..+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 344567788899999986643322 37888843221 00 00000 1111 1248999999999
Q ss_pred CeEEEEEEEeCC
Q psy1595 123 AGEYSCMAINTE 134 (147)
Q Consensus 123 ~g~y~C~~~n~~ 134 (147)
.+.|.|..+...
T Consensus 86 Ta~Y~Ca~e~my 97 (115)
T cd05721 86 TDIYFCKIELMY 97 (115)
T ss_pred CeEEEEEeeecc
Confidence 999999876543
No 245
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.63 E-value=0.098 Score=36.36 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=52.2
Q ss_pred EEee-eeecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecC-CC-CceEE
Q psy1595 14 VPFK-PSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSAN-PR-AHRLL 90 (147)
Q Consensus 14 l~~~-~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~~ 90 (147)
|+|. +...++|-| +.++.+........+..+++..+.+|...+ ....+..|+...-.|.+..+ |+ ...+.
T Consensus 291 L~I~sltaATeGvY-~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV------~p~PVL~Ge~YkAtC~vA~YYPp~Svrlr 363 (566)
T PHA03269 291 LHILSLDASTEGTY-IWRVIHTANKNVINEHHITVMSYKRPNITV------IGDPVLLGNPYAAYCKVNKYYPPHSVIVK 363 (566)
T ss_pred eEEeecccccCceE-EEEEecCCCCceeeeeEEEEEEecCCCccc------cCCccccCCCceEEEEeeeecCCCceEEE
Confidence 6665 466666665 666554332112344566777777774433 45677889999999999864 33 33478
Q ss_pred EEECCeeccc
Q psy1595 91 WFHNDKEIHH 100 (147)
Q Consensus 91 w~~~~~~~~~ 100 (147)
|++|+.++..
T Consensus 364 Wf~ng~~V~~ 373 (566)
T PHA03269 364 WTSNFGNIGK 373 (566)
T ss_pred EEeCCcccCc
Confidence 9999887764
No 246
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.59 E-value=0.0035 Score=33.13 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=20.4
Q ss_pred EEEeee-eecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 13 YVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 13 ~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
.|.|.. ..+|.| .|+|.|.|..+. ....+.|.|
T Consensus 54 ~L~I~~v~~~D~G-~Y~C~A~N~~G~---~~~~~~l~V 87 (88)
T cd05851 54 VLKIFNIQPEDEG-TYECEAENIKGK---DKHQARVYV 87 (88)
T ss_pred EEEECcCChhhCE-EEEEEEEcCCCc---eEEEEEEEE
Confidence 577765 455555 569999998852 234444444
No 247
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.56 E-value=0.0037 Score=31.68 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=16.7
Q ss_pred EEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.....++.+.|+|.|.|..+
T Consensus 40 ~~L~i~~~~~~D~G~Y~C~a~N~~G 64 (74)
T cd05764 40 GTLDILITTVKDTGSFTCIASNAAG 64 (74)
T ss_pred CEEEEEECChhhCEEEEEEEECCCC
Confidence 3466665444455557999999874
No 248
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=96.54 E-value=0.0056 Score=32.20 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=18.3
Q ss_pred eEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 10 TVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 10 ~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
..+.|.|.....++.+.|.|.+.+..+
T Consensus 54 ~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 54 GSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp TEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred ceeEEccCCCChhhCEEEEEEEEECCC
Confidence 356677875444455557999999863
No 249
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.52 E-value=0.015 Score=31.60 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=26.3
Q ss_pred CCeeEEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 7 SNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 7 ~~~~~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
..+..+.|.+.-.+..+++.|+|.|.|.. ...+.++.|.|
T Consensus 60 ~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~---~~~s~tF~l~v 99 (101)
T cd05860 60 NNRYVSELHLTRLKGTEGGTYTFLVSNSD---ASASVTFNVYV 99 (101)
T ss_pred ceEEEEEEEEeecChhhCcEEEEEEECCC---CeEEEEEEEEE
Confidence 34577888887656666666799999876 23344455544
No 250
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=96.49 E-value=0.0043 Score=31.58 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=21.1
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
..|.|.....++.+.|+|.|.|..+. ....+.|.|
T Consensus 41 ~~L~i~~v~~~D~G~Y~C~A~N~~G~---~~~~~~l~V 75 (76)
T cd04978 41 GTLILSNVQPNDTAVYQCNASNVHGY---LLANAFVHV 75 (76)
T ss_pred CEEEECCCChhhCEEEEEEEEccCCe---EEEeEEEEE
Confidence 45777654444445579999998742 234455544
No 251
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.46 E-value=0.0064 Score=32.70 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=17.6
Q ss_pred EEEEeeeeecCCCCeEEEEEEecc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
+.|.|.....+|.++|+|.+.+..
T Consensus 55 ~~L~I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 55 TYLHIIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred CEEEEEEcChhhCEEEEEEEEEee
Confidence 358887655566666799999875
No 252
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.46 E-value=0.0042 Score=31.48 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=16.4
Q ss_pred EEEeee-eecCCCCeEEEEEEeccc
Q psy1595 13 YVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 13 ~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
.|.|.. ..+|.| .|+|.+.|..+
T Consensus 40 ~L~i~~v~~~D~G-~Y~C~a~N~~G 63 (73)
T cd04969 40 SLEILNVTKSDEG-KYTCFAENFFG 63 (73)
T ss_pred eEEEccCChhHCE-EEEEEEECCCC
Confidence 477764 555555 56999999874
No 253
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=96.46 E-value=0.0055 Score=30.87 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=14.9
Q ss_pred EEee-eeecCCCCeEEEEEEeccc
Q psy1595 14 VPFK-PSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 14 l~~~-~~~~d~g~~y~C~~~~~~~ 36 (147)
|.+. +..+|.|. |+|.|.|..+
T Consensus 39 l~i~~v~~~D~G~-Y~C~A~N~~G 61 (71)
T cd05723 39 LQVLGLVKSDEGF-YQCIAENDVG 61 (71)
T ss_pred EEEEcCCcccCEE-EEEEEEcCCC
Confidence 4444 45555555 6999999884
No 254
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=96.46 E-value=0.0053 Score=31.64 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=17.0
Q ss_pred EEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.....++.+.|+|.+.|..+
T Consensus 48 ~~L~i~~v~~~D~G~Y~C~a~N~~G 72 (82)
T cd05856 48 WTLSLKNLKPEDSGKYTCHVSNRAG 72 (82)
T ss_pred EEEEEccCChhhCEEEEEEEEcCCc
Confidence 5677765444444557999999874
No 255
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=96.40 E-value=0.0092 Score=32.16 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=17.6
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. ..+|.|. |+|.|.|..+
T Consensus 64 ~~L~I~~v~~~D~G~-Y~C~A~N~~G 88 (98)
T cd05870 64 SSLHIKDVKLSDSGR-YDCEAASRIG 88 (98)
T ss_pred eEEEEeeCCcCCCEE-EEEEEeccCC
Confidence 4677875 5566665 6999999885
No 256
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.39 E-value=0.0063 Score=32.03 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=21.7
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
...|.|.. ..+|.|. |.|.+.|..+. ......|.|
T Consensus 52 ~~~L~i~~v~~~D~G~-Y~C~a~N~~G~---~~~~~~l~V 87 (88)
T cd04968 52 GAVLKIPNIQFEDEGT-YECEAENIKGK---DTHQGRIYV 87 (88)
T ss_pred CCEEEECCCCcccCEE-EEEEEEECCCc---EEEEEEEEE
Confidence 35677765 5555555 69999998753 234444444
No 257
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=96.38 E-value=0.0075 Score=32.09 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=17.2
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. ..+|.|. |+|.|.|..+
T Consensus 58 ~~L~I~~v~~~D~G~-Y~C~a~N~~G 82 (92)
T cd05737 58 ASLTIKGVSSEDSGK-YGIVVKNKYG 82 (92)
T ss_pred EEEEEccCChhhCEE-EEEEEEECCC
Confidence 4577775 5555555 6999999875
No 258
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.37 E-value=0.0062 Score=31.11 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=21.0
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
+.|.|.....++.+.|.|.|.|..+. ....+.|.|
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~a~N~~G~---~~~~~~l~V 75 (76)
T cd05867 41 GALILTDVQPSDTAVYQCEARNRHGN---LLANAHVHV 75 (76)
T ss_pred CEEEECCCChhhCEEEEEEEECCCCe---EEEEEEEEE
Confidence 45777654444444579999998742 233445544
No 259
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=96.37 E-value=0.0041 Score=31.16 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=17.4
Q ss_pred EEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.....+|.+.|+|.|.|..+
T Consensus 36 ~~L~I~~~~~~D~G~Y~C~a~N~~G 60 (69)
T cd05746 36 GYLAIRDVGVADQGRYECVARNTIG 60 (69)
T ss_pred CEEEECcCChhhCEEEEEEEECCCC
Confidence 4677875444444557999999875
No 260
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=96.35 E-value=0.01 Score=31.39 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=17.9
Q ss_pred EEEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.. ..+| ++.|.|.|.|..+
T Consensus 55 ~~~L~I~~v~~~D-~g~Y~C~A~N~~G 80 (90)
T cd04972 55 IYNLQLSNITSET-QTTVTCTAENPVG 80 (90)
T ss_pred EEEEEEecCCccc-CEEEEEEEECCCC
Confidence 45677775 4555 5557999999875
No 261
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=96.34 E-value=0.0053 Score=32.07 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=23.1
Q ss_pred EEEEee-eeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFK-PSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~-~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
+.|.|. ++.+|.|. |+|.+.+... ...+..+.|.|
T Consensus 48 ~~l~I~~~~~~dsG~-Y~C~~~~~~~--~~~s~~~~i~~ 83 (83)
T cd05753 48 SNLSIPQATLSDSGS-YHCSGIIGSY--DYSSEPVSITV 83 (83)
T ss_pred ceEEECccCHHHCEE-EEEEEEeCCc--eecCCCEEEEC
Confidence 457776 45666665 5999998874 44566666654
No 262
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.33 E-value=0.0095 Score=32.43 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=31.8
Q ss_pred EeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 107 ~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
...+..|.|+.++.+|+|.|...+.+..|....+.+++.|
T Consensus 67 ~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 67 TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 3446789999999999999999999999988766677665
No 263
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.30 E-value=0.0059 Score=32.74 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=16.9
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. ..+|.| .|+|.+.|..+
T Consensus 60 ~~L~I~~~~~~DsG-~Y~C~~~N~~g 84 (94)
T cd05756 60 DLLWFLPAALEDSG-LYTCVVRNSTY 84 (94)
T ss_pred CeEEEccCCcccCe-EEEEEEcCCCc
Confidence 4577765 566666 56999999774
No 264
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=96.28 E-value=0.0073 Score=31.04 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=17.5
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. ..+|.| .|.|.+.|..+
T Consensus 42 ~~L~I~~v~~~D~G-~Y~C~a~N~~G 66 (78)
T cd05743 42 GTLTIRDVKESDQG-AYTCEAINTRG 66 (78)
T ss_pred EEEEECCCChHHCE-EEEEEEEecCC
Confidence 5688875 555555 46999999875
No 265
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=96.28 E-value=0.018 Score=30.76 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=18.1
Q ss_pred eecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 19 SADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 19 ~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
..+|.| .|+|.+.|..+ ...+..+.|.|
T Consensus 72 ~~~D~G-~Y~C~a~N~~G--~~~s~~~~l~v 99 (100)
T cd07693 72 GRSDEG-VYVCVAHNSLG--EAVSRNASLEV 99 (100)
T ss_pred CcCcCE-EEEEEEEcccc--ceecceEEEEe
Confidence 355555 56999999885 33555555554
No 266
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.24 E-value=0.012 Score=32.01 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=24.8
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
....++|++.+.++|+|..|+|+|.+...
T Consensus 58 ~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 58 VNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred ceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 45678899999999999999999998653
No 267
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=96.24 E-value=0.011 Score=30.86 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=15.9
Q ss_pred EEEee-eeecCCCCeEEEEEEeccc
Q psy1595 13 YVPFK-PSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 13 ~l~~~-~~~~d~g~~y~C~~~~~~~ 36 (147)
.|.|. +..+|.| .|+|.+.|..+
T Consensus 52 ~l~i~~~~~~D~G-~Y~C~a~N~~G 75 (85)
T cd05857 52 SLIMESVVPSDKG-NYTCVVENEYG 75 (85)
T ss_pred EEEEccCCcccCE-EEEEEEEeCCC
Confidence 46665 4555665 46999999874
No 268
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=96.20 E-value=0.015 Score=31.04 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=17.7
Q ss_pred EEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.....+|.+.|+|.+.+..+
T Consensus 51 ~~~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 51 GSKLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred CCEEEEeeCChhhCEEEEEEEEecCC
Confidence 35677876555555557999998753
No 269
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=96.16 E-value=0.0055 Score=31.14 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=15.5
Q ss_pred EEEeee-eecCCCCeEEEEEEecc
Q psy1595 13 YVPFKP-SADDDNSKLTCRAENTL 35 (147)
Q Consensus 13 ~l~~~~-~~~d~g~~y~C~~~~~~ 35 (147)
.|.|.. ..+|.|. |+|.+.+..
T Consensus 37 ~L~I~~v~~~D~G~-YtC~a~~~~ 59 (72)
T cd07702 37 SLVIKDVTEEDAGI-YTILLGIKQ 59 (72)
T ss_pred EEEECcCCHHHCEE-EEEEEEccc
Confidence 577765 4555555 699999875
No 270
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=96.11 E-value=0.017 Score=29.43 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=21.8
Q ss_pred EEEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 13 YVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 13 ~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
.|.|.. ..+|.| .|+|.+.|..+. ....+.|.|.
T Consensus 40 ~l~I~~~~~~D~G-~Y~C~a~N~~G~---~~~~~~l~V~ 74 (76)
T cd05736 40 ELHISNVRYEDTG-AYTCIAKNEAGV---DEDISSLFVE 74 (76)
T ss_pred EEEECcCCcccCE-EEEEEEEcCCCC---cceEEEEEEE
Confidence 466664 555555 569999998742 3455666654
No 271
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.11 E-value=0.017 Score=31.10 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=19.5
Q ss_pred eEEEEEeeeeec-CCCCeEEEEEEeccc
Q psy1595 10 TVSYVPFKPSAD-DDNSKLTCRAENTLI 36 (147)
Q Consensus 10 ~~s~l~~~~~~~-d~g~~y~C~~~~~~~ 36 (147)
..+.|.|..... |+.+.|.|.|.|..+
T Consensus 62 ~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 62 VLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred eEEEEEECCccccccceeEEEEEEcCCC
Confidence 346788876544 765657999999885
No 272
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=96.08 E-value=0.013 Score=30.06 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEEeeee----ecCCCCeEEEEEEecccccccccccEE
Q psy1595 12 SYVPFKPS----ADDDNSKLTCRAENTLIANSSMEDTWI 46 (147)
Q Consensus 12 s~l~~~~~----~~d~g~~y~C~~~~~~~~~~~~~~~~~ 46 (147)
+.|.|... ..++.+.|.|.|.|..+ ...+..++
T Consensus 39 g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G--~~~s~~~~ 75 (77)
T cd05733 39 GTLVIDNMNGGRAEDYEGEYQCYASNELG--TAISNEIH 75 (77)
T ss_pred CEEEEeccCCCCCcCCCEEEEEEEEcCCC--cEEccccE
Confidence 45666543 23445556999999885 33444443
No 273
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=96.07 E-value=0.023 Score=30.78 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=23.0
Q ss_pred CCeeEEEEEeeee-ecCCCCeEEEEEEecccc
Q psy1595 7 SNVTVSYVPFKPS-ADDDNSKLTCRAENTLIA 37 (147)
Q Consensus 7 ~~~~~s~l~~~~~-~~d~g~~y~C~~~~~~~~ 37 (147)
+....+.|+|... +.|+++.|.|.|.|..+.
T Consensus 59 ~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~ 90 (98)
T cd05898 59 GSGVLSTLTINNIMEADFQTHYNCTAWNSFGS 90 (98)
T ss_pred CCCcEEEEEECCCccccCCcEEEEEEEeCCcc
Confidence 3456788999865 456666679999998853
No 274
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=96.03 E-value=0.013 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=17.8
Q ss_pred EEEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.. ..+|.| .|+|.|.|..+
T Consensus 42 ~~~L~I~~~~~~D~G-~Y~C~a~N~~G 67 (75)
T cd05750 42 NSELQINKAKLADSG-EYTCVVENILG 67 (75)
T ss_pred eEEEEEccCCcccCe-EEEEEEEEcCC
Confidence 46677775 455555 56999999885
No 275
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=96.03 E-value=0.01 Score=30.59 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=16.9
Q ss_pred EEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
..|.|.....++.+.|+|.+.+..+
T Consensus 45 ~~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 45 EEVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred CEEEECCCChhhCEEEEEEEeCCCC
Confidence 3577765444555557999998763
No 276
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=96.02 E-value=0.011 Score=30.30 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=20.1
Q ss_pred EEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 13 YVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 13 ~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
.|.+.....++.+.|.|.|.|..+. ....+.|.|
T Consensus 42 ~l~i~~v~~~D~G~Y~C~A~N~~G~---~~~~~~l~v 75 (76)
T cd05868 42 TIIFSKVQERSSAVYQCNASNEYGY---LLANAFVNV 75 (76)
T ss_pred EEEECCCCHhhCEEEEEEEEcCCCE---EEEEEEEEe
Confidence 4566544444445569999998852 344455544
No 277
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=96.01 E-value=0.014 Score=29.75 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=17.7
Q ss_pred EEEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.. ..+|.|. |+|.+.|..+
T Consensus 43 ~~~L~I~~~~~~DsG~-Y~C~a~N~~g 68 (76)
T cd05895 43 SSELQISKASLADNGE-YKCMVSSKLG 68 (76)
T ss_pred EEEEEECcCCcccCEE-EEEEEEeCCC
Confidence 46677875 5555555 6999999874
No 278
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.95 E-value=0.02 Score=36.38 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCceEEEEEC-CeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCC
Q psy1595 85 RAHRLLWFHN-DKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 85 ~~~~~~w~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
.|. +.|... |..+..+ ....+...+.|.+.+....++|.|+|......
T Consensus 12 DP~-y~W~GP~g~~l~gn-~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPT-YLWTGPNGKPLSGN-SYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCc-eEEECCCCcccCCC-CeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 455 889775 4444332 22345566789999999999999999987643
No 279
>PHA02633 hypothetical protein; Provisional
Probab=95.93 E-value=0.027 Score=27.51 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=25.2
Q ss_pred EEEeeeeecCCCCeEEEEEEecccccccccccEEEEEEeC
Q psy1595 13 YVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFV 52 (147)
Q Consensus 13 ~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~ 52 (147)
...+.+..+|+|.| .|.+++.. ......+.|.|...
T Consensus 20 Lwilpa~~sDSGiY-iC~~rn~t---~c~~~si~l~V~~~ 55 (63)
T PHA02633 20 MLILNPTQSDSGIY-MCITKNET---YSDMMKFDLCICLR 55 (63)
T ss_pred EEEeccccccCcEE-EEEEcCCC---eeEEEEEEEEEeec
Confidence 34456678888885 99999766 34566677777643
No 280
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.85 E-value=0.029 Score=30.32 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.0
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
.+..+.+.+.+.++|+|..++|++.+...
T Consensus 57 ~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 57 TTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred EEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34778888889999999999999999864
No 281
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=95.77 E-value=0.015 Score=30.42 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=17.2
Q ss_pred EEEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.. ..+|.| .|+|.|.|..+
T Consensus 50 ~~~L~i~~~~~~D~G-~Y~C~a~N~~G 75 (85)
T cd05728 50 AGDLRITKLSLSDSG-MYQCVAENKHG 75 (85)
T ss_pred CCEEEEeeCCHHHCE-EEEEEEECCCC
Confidence 34577765 555554 56999999874
No 282
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=95.76 E-value=0.018 Score=30.66 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=16.9
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. ..+|.|. |+|.+.|..+
T Consensus 58 ~~L~I~~~~~~D~G~-Y~C~a~N~~G 82 (92)
T cd05891 58 ASLTIKGVTSEDSGK-YSINVKNKYG 82 (92)
T ss_pred EEEEECCCChhhCEE-EEEEEEeCCC
Confidence 3577765 5556665 6999999874
No 283
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=95.75 E-value=0.02 Score=30.57 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=20.5
Q ss_pred EEEEeee-ee-cCCCCeEEEEEEecccccccccccEEE
Q psy1595 12 SYVPFKP-SA-DDDNSKLTCRAENTLIANSSMEDTWIL 47 (147)
Q Consensus 12 s~l~~~~-~~-~d~g~~y~C~~~~~~~~~~~~~~~~~l 47 (147)
+.|.|.. .+ +|.|. |.|.|.|..+ ...+..++|
T Consensus 57 g~L~I~~~~~~~D~G~-Y~C~A~N~~G--~~~s~~a~l 91 (93)
T cd05849 57 GNLVINNPDKYKDAGR-YVCIVSNIYG--KVRSREATL 91 (93)
T ss_pred CEEEECcCCcCCCCEE-EEEEEEeCcc--eEEEccEEE
Confidence 4677754 33 45555 6999999885 344444444
No 284
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=95.74 E-value=0.021 Score=29.33 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEEEeee----eecCCCCeEEEEEEecccccccccccEEE
Q psy1595 12 SYVPFKP----SADDDNSKLTCRAENTLIANSSMEDTWIL 47 (147)
Q Consensus 12 s~l~~~~----~~~d~g~~y~C~~~~~~~~~~~~~~~~~l 47 (147)
+.|.|.. ..+|+.+.|.|.|.|..+ ...+..++|
T Consensus 39 ~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G--~~~s~~~~~ 76 (77)
T cd05875 39 GTLVIDFSGGGRPEDYEGEYQCFARNNLG--TALSNKILL 76 (77)
T ss_pred ceEEEeccCCCCCCCCCEEEEEEEEeccc--eEEEEEEEE
Confidence 4566653 224555567999999885 344444443
No 285
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=95.71 E-value=0.014 Score=30.10 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=19.4
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
+.|.|.... ++.+.|.|.|.+. ..+..++|.|
T Consensus 47 ~~l~i~~~~-~dsG~Y~C~a~~~-----~~S~~v~l~V 78 (78)
T cd05752 47 NSYRIRAAN-NDSGEYRCQTQGS-----SLSDPVHLEV 78 (78)
T ss_pred CeEEEeecc-cCCEEeEEECCCC-----cCCCCEEEeC
Confidence 456676554 4555569999864 3455566553
No 286
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.69 E-value=0.02 Score=32.55 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=37.2
Q ss_pred cCCcEEEEeEeecC-----CCCceEEEEECCeeccccccc-cEE--------------eeCCeEEEEeeccCCCeEEEEE
Q psy1595 70 EGDDVYFECQVSAN-----PRAHRLLWFHNDKEIHHNVTG-GII--------------LSNISLVLQKVSRQSAGEYSCM 129 (147)
Q Consensus 70 ~g~~~~l~C~~~~~-----~~~~~~~w~~~~~~~~~~~~~-~~~--------------~~~~~l~i~~~~~~d~g~y~C~ 129 (147)
-.+.+.+.|.+... +... +.|..+|+.+-.-... ... ..+.+|.+..... -.|.|+|.
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~-VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a-~~GnYTCe 103 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMY-VKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA-VEGNYTCE 103 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEE-EEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH-H-EEEEEE
T ss_pred cCCCEEEEeEeccccccccceEE-EEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc-cccceEEE
Confidence 36778888887541 2233 7898888764321111 000 0123466655332 26999999
Q ss_pred EEeCCCCCccccEEEEE
Q psy1595 130 AINTEGRGASQPIILAV 146 (147)
Q Consensus 130 ~~n~~g~~~s~~~~l~v 146 (147)
+........ ..+.|..
T Consensus 104 Vt~~~~ege-~~i~Lk~ 119 (130)
T PF08204_consen 104 VTELSREGE-TTIELKY 119 (130)
T ss_dssp EEETTEEEE-EEEEEEE
T ss_pred EEecCCCce-EEEEEEE
Confidence 987654433 4566654
No 287
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=95.63 E-value=0.024 Score=30.12 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=16.9
Q ss_pred EEEEeee-eecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. ..+|.|. |.|.+.|..+
T Consensus 59 ~~L~i~~~~~~D~G~-Y~C~a~N~~G 83 (92)
T cd05747 59 STFEISKVQMSDEGN-YTVVVENSEG 83 (92)
T ss_pred eEEEECCCCcccCEe-EEEEEEcCCC
Confidence 4677765 4555555 6999999874
No 288
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=95.62 E-value=0.031 Score=30.13 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=21.0
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
..|.|.....+|.+.|+|.+.+..+ ..+..+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~---~~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGF---YEEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCc---EEEEEEEEEE
Confidence 4577775444444556999997552 2444555554
No 289
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=95.60 E-value=0.031 Score=30.34 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=21.9
Q ss_pred EEEEeee-eecCCCCeEEEEEEe-cccccccccccEEEEE
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAEN-TLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~-~~~~~~~~~~~~~l~v 49 (147)
+.|.|.. +.+|.|. |.|.+.+ +.+ ..+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~-Y~C~v~t~P~g---~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGV-YICEFATFPTG---NRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEE-EEEEEEeCCCC---CeEEEEEEEE
Confidence 3466664 5666666 5999998 442 3566667766
No 290
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=95.52 E-value=0.045 Score=29.06 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=23.9
Q ss_pred eeEEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 9 VTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 9 ~~~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
...+.|.|.....++++.|+|.+.+........+..+.|.|
T Consensus 50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 50 QNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred ceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 34566778765555555579999875311233445555544
No 291
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=95.46 E-value=0.034 Score=28.53 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=18.7
Q ss_pred EEEEeeeee-c---CCCCeEEEEEEecccccccccccEE
Q psy1595 12 SYVPFKPSA-D---DDNSKLTCRAENTLIANSSMEDTWI 46 (147)
Q Consensus 12 s~l~~~~~~-~---d~g~~y~C~~~~~~~~~~~~~~~~~ 46 (147)
+.|.|.... + .+.+.|.|.|.|..+ ...+..++
T Consensus 39 g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G--~~~s~~~~ 75 (77)
T cd05874 39 GTLVINIMNGEKAEAYEGVYQCTARNERG--AAVSNNIV 75 (77)
T ss_pred ceEEEeccccCCCCCCCEEEEEEEEcCCC--eEEeeEEE
Confidence 456665322 1 234556999999874 33444444
No 292
>PHA03273 envelope glycoprotein C; Provisional
Probab=95.33 E-value=0.29 Score=33.92 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=50.4
Q ss_pred EEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecC-CC-CceEE
Q psy1595 14 VPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSAN-PR-AHRLL 90 (147)
Q Consensus 14 l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~~ 90 (147)
|+|.. +...+|-| +.+..+..+. ......+++..+.+|...+ ....+..|+...-.|.+..+ |+ ...+.
T Consensus 200 LtI~sltaaTeGvY-tWr~~~~n~t-~~~~~~VtV~~yr~Psvsv------~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~r 271 (486)
T PHA03273 200 LTIKSVDWRTAGVY-VWSLYAKNGT-LVNSTSVTVSTYNAPLVDL------SVHPSLKGENYRAVCVVASYFPHSSVKLR 271 (486)
T ss_pred eEEEecchhhceEE-EEEEecCCCc-eeeeeEEEEEEecCCcccc------cCCccccCCCceEEEEeeeecCCCceEEE
Confidence 66664 55566665 7666554321 2233445555566775443 45677889999999999864 33 33478
Q ss_pred EEECCeecc
Q psy1595 91 WFHNDKEIH 99 (147)
Q Consensus 91 w~~~~~~~~ 99 (147)
|++++.++.
T Consensus 272 Wf~dg~~V~ 280 (486)
T PHA03273 272 WYKNAKEVD 280 (486)
T ss_pred EEeCCeecc
Confidence 999999876
No 293
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=95.31 E-value=0.041 Score=29.41 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=19.9
Q ss_pred EEEEee-eee-cCCCCeEEEEEEecccccccccccEEE
Q psy1595 12 SYVPFK-PSA-DDDNSKLTCRAENTLIANSSMEDTWIL 47 (147)
Q Consensus 12 s~l~~~-~~~-~d~g~~y~C~~~~~~~~~~~~~~~~~l 47 (147)
+.|.|. ... .|.|. |.|.|.|..+ ...+..+.|
T Consensus 58 g~L~I~~~~~~~D~G~-Y~C~A~N~~G--~~~s~~a~l 92 (94)
T cd05850 58 GNLVINNPQKARDAGS-YQCLAINRCG--TVVSREANL 92 (94)
T ss_pred CeEEEccCCccCcCEE-EEEEEEcCcC--cEEEEEEEE
Confidence 456664 344 55555 6999999885 344444443
No 294
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.27 E-value=0.068 Score=27.22 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.5
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
+...+.|.+.+...|++..|+|.+.+..
T Consensus 44 ~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 44 YFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred EEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 5577778887777788888999999865
No 295
>KOG4597|consensus
Probab=95.26 E-value=0.031 Score=38.52 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=52.9
Q ss_pred ceecCCcEEEEeEeecCCCCceEEEEE---CCeec-ccccc---ccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCcc
Q psy1595 67 DIKEGDDVYFECQVSANPRAHRLLWFH---NDKEI-HHNVT---GGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGAS 139 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~~~~~~~~~~w~~---~~~~~-~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s 139 (147)
.+-.++...+.|-+.|.+.+. +.|-+ ++..+ +.... .-.......|.|-+....|+|.|+|.+.+.+|...
T Consensus 207 ~vg~wetcS~tCg~~G~q~r~-V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~- 284 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYRV-VTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR- 284 (560)
T ss_pred hcccchhhcccccccCCcCce-eeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee-
Confidence 356688889999999988887 89955 33222 11110 00122234599999999999999999999998755
Q ss_pred ccEEEEE
Q psy1595 140 QPIILAV 146 (147)
Q Consensus 140 ~~~~l~v 146 (147)
+.+.+.+
T Consensus 285 rdv~c~s 291 (560)
T KOG4597|consen 285 RDVPCSS 291 (560)
T ss_pred ccceeee
Confidence 4555543
No 296
>PHA03042 CD47-like protein; Provisional
Probab=95.25 E-value=0.27 Score=31.66 Aligned_cols=68 Identities=25% Similarity=0.429 Sum_probs=39.7
Q ss_pred CCcEEEEeEeecC-----CCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEE
Q psy1595 71 GDDVYFECQVSAN-----PRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145 (147)
Q Consensus 71 g~~~~l~C~~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 145 (147)
.+.+.+.|..... ...+ +.|..++...-..... ...+|.. +-...-.|+|+|.|.+...... +.+.|+
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~-V~Wkf~~~~If~~n~t----n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk-~~IeLk 103 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIH-INWKFNNKVIFKKNNT----NTSSLKF-NFSKNLSGNYTCEAINKFNKIK-NTIELQ 103 (286)
T ss_pred CceEEEEeecCChhhcCccceE-EEEEeCCeeEEEecCC----cceEEEE-eccccCCCceeEEEeecccCcc-EEEEEE
Confidence 5677888887642 2344 8999998765432211 0122333 3333447999999998654433 445554
No 297
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=95.21 E-value=0.035 Score=29.54 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=21.8
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
....+.|.+.....++++.|+|++.|..
T Consensus 58 ~~~~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 58 YSVSSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred EEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence 4567777777776678888899999876
No 298
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=95.20 E-value=0.033 Score=29.34 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=22.7
Q ss_pred EEEee-eeecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 13 YVPFK-PSADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 13 ~l~~~-~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
.|.|. +..+|.|. |.|.+.+... ......++|.|.
T Consensus 52 ~L~I~~~~~~D~G~-Y~C~a~~~~~--~~~~~~~~l~V~ 87 (89)
T cd04979 52 GLLIRSVSPADAGV-YTCQSVEHGF--KQTLATYSLNVL 87 (89)
T ss_pred CEEEccCCHHHCEE-EEEEEecCcc--ceeEeEEEEEEe
Confidence 36665 45666666 5999987653 445566666664
No 299
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=95.15 E-value=0.074 Score=29.42 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=23.5
Q ss_pred EEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
.+.|+|......|.+.|.|.+.... ...+..+.|.|.
T Consensus 71 ~asL~I~~l~~sD~G~Y~C~v~~~~---~~~~~~v~l~V~ 107 (110)
T cd05878 71 DASLEISRLRSSDSGVYRCEVMHGI---EDEQDTVPLEVT 107 (110)
T ss_pred cEEEEECCCChhhCEEEEEEEEeCC---CcceEEEEEEEE
Confidence 3558887644444444699998754 344566777665
No 300
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=95.13 E-value=0.052 Score=29.19 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=15.4
Q ss_pred EEEEEeee-eecCCCCeEEEEEEe
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAEN 33 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~ 33 (147)
...|.|.. ..+|.|. |+|.+..
T Consensus 61 ~~~L~I~nV~~~D~G~-YtC~~~t 83 (95)
T cd05882 61 ELIISISNVQLSDEGE-YTCSIFT 83 (95)
T ss_pred eEEEEECCCCcccCEE-EEEEEEe
Confidence 35677875 5555555 6999986
No 301
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=95.10 E-value=0.039 Score=29.01 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=24.6
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
....+.|.+.+.+.|++..++|.+.++..
T Consensus 57 ~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 57 FTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp EEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 34678899999999999999999998763
No 302
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=95.04 E-value=0.067 Score=28.55 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=16.7
Q ss_pred ecCCCCeEEEEEEec-ccccccccccEEEE
Q psy1595 20 ADDDNSKLTCRAENT-LIANSSMEDTWILN 48 (147)
Q Consensus 20 ~~d~g~~y~C~~~~~-~~~~~~~~~~~~l~ 48 (147)
+.|.|. |.|.|.|. .+ ...+..++|.
T Consensus 68 ~~D~G~-Y~C~a~N~~~G--~~~s~~~~l~ 94 (95)
T cd05722 68 KPDEGF-YQCVAQNDSLG--SIVSRTARLT 94 (95)
T ss_pred CCcCEE-EEEEEECCccC--cEEEeeeEEe
Confidence 445554 69999998 64 4445555554
No 303
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.02 E-value=0.051 Score=29.63 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=21.9
Q ss_pred EEEEeeeeecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
+.|.|.....+|.+.|.|.+.+.. ......++|.|.
T Consensus 68 ~sL~I~~v~~~DsG~Y~C~v~~~~---~~~~~~~~l~v~ 103 (106)
T cd05877 68 ASLVITDLRLEDYGRYRCEVIDGL---EDESVVVALRLR 103 (106)
T ss_pred EEEEEccCChHHCEEEEEEEEecc---cceEEEEEEEEE
Confidence 457777654455555699998754 234455566553
No 304
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=94.99 E-value=0.078 Score=27.31 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=16.0
Q ss_pred EEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
..|.|.....++.+.|.|.+.+..+
T Consensus 51 ~~l~i~~~~~~d~g~Y~C~~~n~~g 75 (85)
T cd05729 51 WTLILESVVPSDSGKYTCIVENKYG 75 (85)
T ss_pred EEEEEeECCcccCEEEEEEEEECCc
Confidence 3566665444444456999998764
No 305
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=94.96 E-value=0.049 Score=29.72 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=23.2
Q ss_pred EEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
...|.|.....+|.+.|.|.+.+.. ......++|.|.
T Consensus 67 ~~sL~I~~v~~sD~G~Y~C~v~~~~---~~~~~~v~L~V~ 103 (106)
T cd05714 67 DASLVITDLRLEDSGRYRCEVIDGI---EDEQDTVELEVR 103 (106)
T ss_pred cceEEECCCCHHHCEEEEEEEEcCC---CceEEEEEEEEE
Confidence 4567787655555555699998753 233556666664
No 306
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=94.89 E-value=0.063 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=15.9
Q ss_pred EEEEeee-e-ecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFKP-S-ADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~~-~-~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|.. . .+|.|. |.|.|.|..+
T Consensus 58 g~L~i~~~~~~~D~G~-Y~C~A~N~~G 83 (94)
T cd05848 58 GNLIISNPSEVKDSGR-YQCLATNSIG 83 (94)
T ss_pred CeEEEccCCccCcCEE-EEEEEEcCCC
Confidence 4455653 3 356555 6999999885
No 307
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=94.85 E-value=0.053 Score=28.20 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=17.2
Q ss_pred eEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 10 TVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 10 ~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
..+.|.+... .|. +.|.|.|.|..+
T Consensus 47 ~~s~L~i~~~-~d~-g~Y~C~A~N~~G 71 (81)
T cd05749 47 SPSVLNVPGL-NET-SKFSCEAHNAKG 71 (81)
T ss_pred CCCEEEEccc-cCC-eEEEEEEEeccC
Confidence 3456777654 354 467999999885
No 308
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=94.85 E-value=0.048 Score=25.92 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=15.7
Q ss_pred EEEEeeeeecCCCCeEEEEEEecc
Q psy1595 12 SYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 12 s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
..|.|.....++.+.|+|.+.+..
T Consensus 39 ~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 39 STLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred cEEEEeeCCcccCEEEEEEEecCC
Confidence 457776544455555799998754
No 309
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=94.66 E-value=0.11 Score=28.82 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=22.2
Q ss_pred eEEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 10 TVSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 10 ~~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
..+.|+|.. +.+|.|. |.|.+.+.. ......+.|.|.
T Consensus 72 ~~asL~I~nl~~sDsG~-Y~C~V~~g~---~~~~~~v~l~v~ 109 (112)
T cd05900 72 SDATLEITELRSNDSGT-YRCEVMHGI---EDNYDTVEVQVK 109 (112)
T ss_pred CCcEEEEeecccccCEE-EEEEEecCC---CCceeEEEEEEE
Confidence 345677876 4555555 699999653 234455555553
No 310
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=94.62 E-value=0.064 Score=27.18 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=17.4
Q ss_pred eeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 17 KPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 17 ~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
.+..+|.|. |+|.+.+..+ ...+..+.|.|
T Consensus 51 ~~~~~~~g~-y~C~~~~~~~--~~~s~~~~v~V 80 (80)
T PF13895_consen 51 NVSPEDSGN-YTCRASNGSG--SNTSTSVNVTV 80 (80)
T ss_dssp SEEGGGTEE-EEEEEEETTE--EEEEEEEEEEE
T ss_pred eeccccCEE-EEEEEEeCCC--CeEeeeEEeeC
Confidence 345555555 6999988553 23445555543
No 311
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=94.60 E-value=0.061 Score=28.97 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=21.9
Q ss_pred EEEEeee-eecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
..|+|.. ..+|.|. |.|.+....+ ......+.|.|
T Consensus 61 ~sL~I~~~~~~DsG~-Y~c~v~~~~~--~~~~~~f~L~v 96 (97)
T cd05775 61 YSLQISNLKMEDAGS-YRAEINTKNG--VTITKEFTLHI 96 (97)
T ss_pred eeEEECCCchHHCEE-EEEEEEcCCC--CeEEEEEEEEe
Confidence 5588876 4555555 6999987652 33445555555
No 312
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=94.57 E-value=0.052 Score=29.27 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=17.2
Q ss_pred EEEEee-eeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFK-PSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~-~~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|. +...|.|. |+|.|.+...
T Consensus 60 G~L~fs~v~~~D~g~-Y~C~A~n~~~ 84 (96)
T cd05727 60 GNLYIAKVEASDRGN-YSCFVSSPSS 84 (96)
T ss_pred CcEEEeecCHhhCce-eEEEEEeccc
Confidence 457776 46667665 6999999763
No 313
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=94.54 E-value=0.027 Score=27.47 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=13.6
Q ss_pred EEEeeeeecCCCCeEEEEE
Q psy1595 13 YVPFKPSADDDNSKLTCRA 31 (147)
Q Consensus 13 ~l~~~~~~~d~g~~y~C~~ 31 (147)
.|.|.+...++.+.|+|.|
T Consensus 46 ~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 46 RLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEESSCTGGGTEEEEEEE
T ss_pred EEEEccCCHHHCEEEEEEC
Confidence 3888876555666679986
No 314
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=94.36 E-value=0.084 Score=28.90 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=16.2
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecc
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTL 35 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~ 35 (147)
...|.|.+ ..+|.|. |+|.+.|..
T Consensus 69 ~~~Lwf~Pa~~eDSG~-Y~C~~rN~t 93 (104)
T cd05896 69 EDSIWFRPAELQDSGL-YTCVLRNST 93 (104)
T ss_pred CCEEEEEeCChhhCeE-EEEEECCCC
Confidence 34566665 5555555 699999866
No 315
>smart00409 IG Immunoglobulin.
Probab=94.30 E-value=0.18 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=17.0
Q ss_pred EEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
...|.+.....++.+.|.|.+.+..
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00409 50 NSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCC
Confidence 3457777655555566799999655
No 316
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=94.30 E-value=0.18 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=17.0
Q ss_pred EEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
...|.+.....++.+.|.|.+.+..
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00410 50 NSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCC
Confidence 3457777655555566799999655
No 317
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=94.30 E-value=0.15 Score=27.25 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=20.7
Q ss_pred EEEEEeeeeecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
...|.|.....+|.+.|.|.+..... ......+.|.|
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~--g~~~~~~~l~V 97 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQ--GNRQKVTTLTV 97 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCC--CcEEEEEEEEe
Confidence 45678876444444556999875321 22344455554
No 318
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=94.20 E-value=0.18 Score=27.27 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred EEEEEeee-eecCCCCeEEEEEEe-cccccccccccEEEEE
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAEN-TLIANSSMEDTWILNV 49 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~-~~~~~~~~~~~~~l~v 49 (147)
.+.|+|.. +.+|.|. |.|.+.+ +.+ . .+..+.|.|
T Consensus 63 ~~sL~I~nv~~sD~Gt-Y~C~v~~~p~g--~-~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGK-YKCRVITFPAG--N-FEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceE-EEEEEEeCCCC--C-eeeEEEEEe
Confidence 34577775 5556665 5999986 432 2 355555554
No 319
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=94.18 E-value=0.066 Score=26.66 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=17.7
Q ss_pred CeeEEEEEee-eeecCCCCeEEEEEEe
Q psy1595 8 NVTVSYVPFK-PSADDDNSKLTCRAEN 33 (147)
Q Consensus 8 ~~~~s~l~~~-~~~~d~g~~y~C~~~~ 33 (147)
....+.|.+. +...|.|. |+|.|.|
T Consensus 50 ~~~~~~L~i~~v~~~~~g~-y~C~a~N 75 (75)
T PF13927_consen 50 SSSNSTLTISNVTRSDNGT-YTCIASN 75 (75)
T ss_dssp EEEEEEEEESSCCGGGTEE-EEEEEEE
T ss_pred cceeeEEEEccCCHHhCcE-EEEEEEC
Confidence 3466778887 45666666 6999975
No 320
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=94.04 E-value=0.058 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=17.2
Q ss_pred EEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
.+.|.|.....++.+.|.|.+.|..+
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g 76 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLD 76 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCC
Confidence 35688875444444446999998774
No 321
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=94.02 E-value=0.13 Score=27.40 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=21.0
Q ss_pred EEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
+.|.|.. .++|.|- |+|.+.+... ......++|.|.
T Consensus 53 ~~L~I~~~~~~DsG~-Y~C~a~~~~~--~~~~~~~~l~v~ 89 (91)
T cd05871 53 RGLLLRSLQRSDAGV-YTCTAVEHSF--SQTLAKYTLHVI 89 (91)
T ss_pred CeEEEeeCChhHCEE-EEEEEEccCC--eEEEEEEEEEEe
Confidence 4477764 5666666 5999986442 122335666654
No 322
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=93.95 E-value=0.23 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=22.8
Q ss_pred EEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
..|.|.. +..|.|. |.|.+.... ......+.|.|.
T Consensus 79 asL~i~~v~~sD~G~-Y~C~V~~g~---~~~~~~v~L~V~ 114 (117)
T cd05901 79 ASLTIVKLRASDAGV-YRCEVMHGI---EDTQDTVSLDVS 114 (117)
T ss_pred eEEEEcccccccCEE-EEEEEEECC---cccEEEEEEEEE
Confidence 5566764 5666666 599998765 345566666664
No 323
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=93.88 E-value=0.085 Score=28.42 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=17.9
Q ss_pred EEEEee-eeecCCCCeEEEEEEeccc
Q psy1595 12 SYVPFK-PSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~-~~~~d~g~~y~C~~~~~~~ 36 (147)
+.|.|. +...|.|..|.|.|.+...
T Consensus 58 GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 58 GNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceEEEEEEehhhCCCCeEEEEEcccc
Confidence 556675 5677777457999998763
No 324
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=93.85 E-value=0.16 Score=27.10 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=15.3
Q ss_pred EEEEeee-eecCCCCeEEEEEEecc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTL 35 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~ 35 (147)
+.|.|.. ..+|.|. |.|.+....
T Consensus 62 ~~L~I~~v~~~DsG~-Y~C~~~~~~ 85 (95)
T cd05717 62 LSISISNVSLSDEGR-YTCSLYTMP 85 (95)
T ss_pred eEEEEccCCcccCEE-EEEEEecCC
Confidence 4577875 5555555 699998643
No 325
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=93.82 E-value=0.14 Score=27.44 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=20.8
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
+...+.|.+.+...+++..|+|.+.+..
T Consensus 59 y~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 59 FSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 4466777776666667888899999865
No 326
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=93.82 E-value=0.14 Score=27.47 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=15.2
Q ss_pred EEEEeee-eecCCCCeEEEEEEec
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENT 34 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~ 34 (147)
+.|.|.. ..+|.|. |.|.+...
T Consensus 62 ~sL~I~~v~~~DsG~-Y~C~~~t~ 84 (95)
T cd07701 62 LSISISDVSLSDEGQ-YTCSLFTM 84 (95)
T ss_pred EEEEECcCCcccCEE-EEEEeEee
Confidence 4677875 5555555 69999873
No 327
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=93.71 E-value=0.1 Score=28.22 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=21.7
Q ss_pred eEEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 10 TVSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 10 ~~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
..+.+++.++++|+|..|+|+|....
T Consensus 61 ~~~~vtftptreD~g~~fsC~A~L~l 86 (99)
T cd07689 61 KSLEVTFTPTIEDIGKVLVCRAKLHI 86 (99)
T ss_pred cceeEEEecchhhCCcEEEEEEEEee
Confidence 44678888889999999999998654
No 328
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=93.61 E-value=0.14 Score=27.77 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=22.7
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
+...+.|.+....+++|..|+|.+.+...
T Consensus 62 y~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 62 YSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred EEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 55677777777777788889999998763
No 329
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.53 E-value=0.14 Score=27.85 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=23.8
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
+...|.|.+.+..+..|..|+|.+.|...
T Consensus 62 ys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 62 YSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred EEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 56888888887777888888999998763
No 330
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.48 E-value=0.48 Score=31.69 Aligned_cols=22 Identities=14% Similarity=0.519 Sum_probs=17.7
Q ss_pred cEEEEeEeec-CCCCceEEEEEC
Q psy1595 73 DVYFECQVSA-NPRAHRLLWFHN 94 (147)
Q Consensus 73 ~~~l~C~~~~-~~~~~~~~w~~~ 94 (147)
.+.|.|.+.| +|....+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5789999998 566555899999
No 331
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.42 E-value=0.16 Score=27.43 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=21.9
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
+...+.|.+.+..++.|..|+|.+.|...
T Consensus 59 y~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 59 LSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred EEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 55677777776666778888999998763
No 332
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=93.37 E-value=0.094 Score=27.73 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=16.6
Q ss_pred EEEEee-eee-cCCCCeEEEEEEeccc
Q psy1595 12 SYVPFK-PSA-DDDNSKLTCRAENTLI 36 (147)
Q Consensus 12 s~l~~~-~~~-~d~g~~y~C~~~~~~~ 36 (147)
+.|.|. +.. +|.|. |+|.|.|..+
T Consensus 58 ~~L~i~~~~~~~d~G~-Y~C~a~N~~G 83 (91)
T cd04967 58 GNLVISNPSKAKDAGR-YQCLASNIVG 83 (91)
T ss_pred CEEEEecCCccCCCEE-EEEEEEcCCC
Confidence 456665 444 56665 6999999875
No 333
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=93.15 E-value=0.27 Score=26.56 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=20.4
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
-+.|.|.. +.+|.|. |.|.+...-. ...+....|.|
T Consensus 59 d~sl~i~nv~~~D~G~-Y~C~v~tfP~--G~~~~~~~l~~ 95 (96)
T cd05887 59 DATIMLENVGFSDIGV-YICKAVTFPL--GNTQSSTTVTV 95 (96)
T ss_pred ccEEEEeCCCccccEE-EEEEEEeCCC--CCeeEEEEEEE
Confidence 34566764 5666666 5999865321 23444455554
No 334
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=93.07 E-value=0.18 Score=27.72 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=15.3
Q ss_pred EEEee-eeecCCCCeEEEEEEecc
Q psy1595 13 YVPFK-PSADDDNSKLTCRAENTL 35 (147)
Q Consensus 13 ~l~~~-~~~~d~g~~y~C~~~~~~ 35 (147)
.|.|. ++++|.|. |+|.+.+..
T Consensus 71 SL~I~~v~~~D~G~-Y~~~v~~~~ 93 (105)
T cd05774 71 SLLIQNVTQKDTGF-YTLQTITTN 93 (105)
T ss_pred cEEEecCCcccCEE-EEEEEEeCC
Confidence 46666 46666666 599998765
No 335
>PHA03271 envelope glycoprotein C; Provisional
Probab=92.90 E-value=2.2 Score=29.55 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=44.9
Q ss_pred EEeee-eecCCCCeEEEEEEecccccccccccEEEEEEe-CCceeEEeccCCCccceecCCcEEEEeEeecC-CC-CceE
Q psy1595 14 VPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHF-VPRVVIHFGSSLNPTDIKEGDDVYFECQVSAN-PR-AHRL 89 (147)
Q Consensus 14 l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~ 89 (147)
+.|.. -..++| ||.-........ ........+.+.+ +|...+ ....+..|+.-.-.|.+..+ |+ ...+
T Consensus 209 v~I~svD~~t~G-y~~v~~~d~~N~-~i~e~~~~~~v~~RPPsVsV------~a~PVL~Ge~YkAtC~vAnYYPP~Svrl 280 (490)
T PHA03271 209 VEIRNVDYADNG-YIQVIMRDPFNR-PLLDKHIYIRVCQRPASVDV------LAPPVLSGENYKASCIVRHFYPPGSVYV 280 (490)
T ss_pred EEEEEeecccce-EEEEEecCCCCC-ccccceEEEEEEecCCCccc------cCCccccCCCceEEEEeeeecCCCceEE
Confidence 45554 444555 654333333221 1223333444443 333332 45567889999999999864 33 3347
Q ss_pred EEEECCeecccc
Q psy1595 90 LWFHNDKEIHHN 101 (147)
Q Consensus 90 ~w~~~~~~~~~~ 101 (147)
.|+++|......
T Consensus 281 rWf~nG~~V~~~ 292 (490)
T PHA03271 281 SWRQNGNIATPR 292 (490)
T ss_pred EEEeCCccccCc
Confidence 899999876543
No 336
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=92.88 E-value=0.49 Score=25.46 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=28.4
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEecccccccccccEEEE
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILN 48 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~ 48 (147)
-...|.+.+.+++.++|...+|.+.++. ......+.|.
T Consensus 60 ~TV~S~y~lVPs~~~~gk~lTCvV~h~~---~~~~~~~~L~ 97 (98)
T cd05890 60 VTVISRYRLVPSREAHKQKLTCIVNYRN---DRFTDSVTLN 97 (98)
T ss_pred EEEEEEEEEeECHHHcCCEeEEEEEecc---ccccccEEec
Confidence 3478888888999999999999999864 3344455554
No 337
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=92.76 E-value=0.31 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=23.4
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
...|.|.. +.+|.|. |.|.+.... ...+..+.|.|.
T Consensus 71 ~asL~i~nv~~~D~G~-Y~C~v~~g~---~~~~~~v~L~V~ 107 (110)
T cd05902 71 NASLVLSRLRYSDSGT-YRCEVVLGI---NDEQDTVPLEVT 107 (110)
T ss_pred eEEEEECCCCHHHCEE-EEEEEEECC---cccEEEEEEEEE
Confidence 45566764 6666666 599998744 345566667664
No 338
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=92.74 E-value=0.19 Score=27.38 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=21.4
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEeccc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTLI 36 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~~ 36 (147)
+...+.|.+.+..++++..|+|.+.|...
T Consensus 64 y~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 64 YFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred EEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 44677777766666677778999998763
No 339
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=92.71 E-value=0.2 Score=26.39 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=15.9
Q ss_pred EEEEeee-eecCCCCeEEEEEEecc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTL 35 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~ 35 (147)
..|.|.. ..+|.|. |.|.+....
T Consensus 57 ~sL~I~~l~~~DsG~-Y~c~v~~~~ 80 (92)
T cd05741 57 GSLLIQNLTKEDSGT-YTLQIISTN 80 (92)
T ss_pred ceEEEccCCchhcEE-EEEEEEcCC
Confidence 4577775 5555555 599998765
No 340
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=92.63 E-value=0.31 Score=27.30 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=14.9
Q ss_pred EEee-eeecCCCCeEEEEEEecc
Q psy1595 14 VPFK-PSADDDNSKLTCRAENTL 35 (147)
Q Consensus 14 l~~~-~~~~d~g~~y~C~~~~~~ 35 (147)
|.|. .+.+|.|. |+|.+.+.-
T Consensus 82 I~I~nv~~sD~G~-Y~C~v~n~p 103 (116)
T cd05879 82 IVIHNLDYTDNGT-FTCDVKNPP 103 (116)
T ss_pred EEEccCCcccCEE-EEEEEEcCC
Confidence 4444 56777777 599999865
No 341
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=92.62 E-value=0.26 Score=26.40 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=21.5
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEE
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNV 49 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v 49 (147)
.+.|.|.. ..+|.|- |.|.+...- ....+..+.|.|
T Consensus 60 ~~sL~I~nv~~~D~G~-Y~C~~~~~p--~g~~~~~~~L~v 96 (97)
T cd05846 60 STSITIWNVTLEDEGC-YKCIFNTFP--DGSKSGTMCLTV 96 (97)
T ss_pred ccEEEEeCCceeeeEE-EEEEEEeCC--CCCeeeEEEEEE
Confidence 35577765 5666666 599987532 123455566665
No 342
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=92.62 E-value=0.31 Score=27.06 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=22.7
Q ss_pred CeeEEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 8 NVTVSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 8 ~~~~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
+...+.|.+.+..+|.+..|+|.+.|..
T Consensus 65 y~~~S~L~~~~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 65 YNVTSTVQVKLTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EEEEEEEEEECccccccCceEEEEEeCC
Confidence 4577888888888887777799999875
No 343
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=92.23 E-value=0.45 Score=26.48 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=16.1
Q ss_pred EEEEeee-eecCCCCeEEEEEEecc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTL 35 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~ 35 (147)
+.|+|.. ..+|.|. |.|.+.+..
T Consensus 80 ~sL~I~~v~~~D~G~-Y~C~v~~~~ 103 (116)
T cd05715 80 ASIVIHNLQFTDNGT-YTCDVKNPP 103 (116)
T ss_pred eEEEEeeCCcccCEE-EEEEEEeCC
Confidence 4577765 6666666 599999764
No 344
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=92.23 E-value=0.26 Score=26.81 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=16.2
Q ss_pred EEEEEeeeeecCCCCeEEEEEEec
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENT 34 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~ 34 (147)
...|.|......|.+.|.|.+...
T Consensus 78 ~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 78 NFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp EEEEEESSESGGGEEEEEEEEEES
T ss_pred eEEEEECCCCcCcCEEEEEEEEEC
Confidence 455778765555555569999875
No 345
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=91.91 E-value=0.12 Score=27.78 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=16.5
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecc
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTL 35 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~ 35 (147)
.+.|+|.. ..+|.|. |.|.+.+..
T Consensus 64 ~~~L~I~~l~~sDsgt-Y~C~v~~~~ 88 (94)
T cd07690 64 SFPLIIKNLKIEDSDT-YICEVEDKK 88 (94)
T ss_pred eEEEEECCCCHHHCEE-EEEEECCcc
Confidence 35688875 5555555 699998765
No 346
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=91.62 E-value=1.5 Score=30.16 Aligned_cols=68 Identities=25% Similarity=0.330 Sum_probs=45.4
Q ss_pred ceecCCcEEEEeEee--cCCCCceEEEEECCeeccccc----------------cccE---------EeeCCeEEEEeec
Q psy1595 67 DIKEGDDVYFECQVS--ANPRAHRLLWFHNDKEIHHNV----------------TGGI---------ILSNISLVLQKVS 119 (147)
Q Consensus 67 ~~~~g~~~~l~C~~~--~~~~~~~~~w~~~~~~~~~~~----------------~~~~---------~~~~~~l~i~~~~ 119 (147)
.+..|..+.+.|... |+.......|+..|.+..+-. +.+. -+..++|+|+.+.
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 355699999999865 444444478988765443110 0011 1124679999999
Q ss_pred cCCCeEEEEEEEeCC
Q psy1595 120 RQSAGEYSCMAINTE 134 (147)
Q Consensus 120 ~~d~g~y~C~~~n~~ 134 (147)
.+..|-|.|.+....
T Consensus 355 I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 355 INNAGCYEAQAFMGK 369 (500)
T ss_pred EEcCCceEEEEecCc
Confidence 999999999998653
No 347
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=90.98 E-value=0.62 Score=25.09 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=14.7
Q ss_pred EEEEEeeeeecCCCCeEEEEEEe
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAEN 33 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~ 33 (147)
...|.|.....+|.+.|.|++..
T Consensus 61 ~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 61 ELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred EEEEEECcCCcccCEEEEEEEEc
Confidence 44578875444444446999975
No 348
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=90.97 E-value=0.65 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=16.0
Q ss_pred EEEEeee-eecCCCCeEEEEEEecc
Q psy1595 12 SYVPFKP-SADDDNSKLTCRAENTL 35 (147)
Q Consensus 12 s~l~~~~-~~~d~g~~y~C~~~~~~ 35 (147)
+.|.|.. +.+|.|. |.|.+.+..
T Consensus 79 ~sL~I~~v~~~D~G~-Y~C~v~~~~ 102 (115)
T cd05880 79 ASILIWQLQPTDNGT-YTCQVKNPP 102 (115)
T ss_pred eEEEEeeCChhhCEE-EEEEEEeCC
Confidence 4477775 5666666 599999765
No 349
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=90.86 E-value=0.52 Score=25.34 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=20.5
Q ss_pred CCeeEEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 7 SNVTVSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 7 ~~~~~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
.+...+.|.+.....+.+..|+|.+.+..
T Consensus 59 ty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 59 LYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 35567777776555456777899999864
No 350
>PHA02982 hypothetical protein; Provisional
Probab=90.46 E-value=2 Score=26.86 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=23.0
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeCCCC
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINTEGR 136 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~~g~ 136 (147)
.++|+|+.+..+..|-|+|.+....+.
T Consensus 99 ~STLTIkk~~i~N~GCYtc~~ks~~~k 125 (251)
T PHA02982 99 SSTFTMKKPDPQNLGCFTCEAKDAEGK 125 (251)
T ss_pred ceeEEeccCCcccCCceEEEEecCCCc
Confidence 467999999999999999999875543
No 351
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=89.97 E-value=0.99 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=15.8
Q ss_pred eeEEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 9 VTVSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 9 ~~~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
...+.|.+... ++..|+|++.|..
T Consensus 60 ~~~s~l~v~~~---~~~~ytC~V~H~~ 83 (93)
T cd07698 60 QLWVTLEVPPE---DKARYSCRVEHSG 83 (93)
T ss_pred EEEEEEEECCC---CCCEEEEEEEeCC
Confidence 34555555433 5677899999865
No 352
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=89.92 E-value=1.2 Score=23.76 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=17.3
Q ss_pred eeEEEEEeeeeecCCCCeEEEEEEe
Q psy1595 9 VTVSYVPFKPSADDDNSKLTCRAEN 33 (147)
Q Consensus 9 ~~~s~l~~~~~~~d~g~~y~C~~~~ 33 (147)
...+.+.|......+++.|.|....
T Consensus 52 ~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 52 GFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred eEEEEEEecCCCcccCEEEEEEEEC
Confidence 3456777876666666667999864
No 353
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=89.87 E-value=0.86 Score=24.79 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=15.2
Q ss_pred EEEEEeee-eecCCCCeEEEEEEec
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENT 34 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~ 34 (147)
...|.|.. ..+|.|. |.|.+.+.
T Consensus 69 ~~~L~I~~~~~~DsG~-Y~C~~~~~ 92 (109)
T cd04983 69 SSSLHISAAQLSDSAV-YFCALSES 92 (109)
T ss_pred EEEEEECCCCHHHCEE-EEEEEecC
Confidence 45677765 4555555 69999864
No 354
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=87.93 E-value=0.96 Score=25.33 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=20.5
Q ss_pred CeeEEEEEeeeeec-CCCCeEEEEEEeccc
Q psy1595 8 NVTVSYVPFKPSAD-DDNSKLTCRAENTLI 36 (147)
Q Consensus 8 ~~~~s~l~~~~~~~-d~g~~y~C~~~~~~~ 36 (147)
+...+.|.+.+..+ +.+..|+|.+.|...
T Consensus 64 Ys~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 64 YSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred EEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 44677777776554 347778999998763
No 355
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=87.89 E-value=2.6 Score=21.96 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=17.8
Q ss_pred eCCeEEEEeeccCCCeEEEEEEE
Q psy1595 109 SNISLVLQKVSRQSAGEYSCMAI 131 (147)
Q Consensus 109 ~~~~l~i~~~~~~d~g~y~C~~~ 131 (147)
............+|+|.+.|.|.
T Consensus 41 ~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 41 TKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp ESSEEEEESBTCGGSEEEEEEEE
T ss_pred cceEEEEecCCCCCCEEEEEEEc
Confidence 33456667777899999999995
No 356
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=87.50 E-value=1.3 Score=23.66 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=14.9
Q ss_pred eEEEEEeeeeecCCCCeEEEEEEe
Q psy1595 10 TVSYVPFKPSADDDNSKLTCRAEN 33 (147)
Q Consensus 10 ~~s~l~~~~~~~d~g~~y~C~~~~ 33 (147)
....|.|......|.+.|.|.+.+
T Consensus 61 ~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 61 NTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CEEEEEECCCChhhCEEEEEEEcc
Confidence 345677875444444456999874
No 357
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=86.98 E-value=0.93 Score=24.66 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=14.8
Q ss_pred EEEEEeeeeecCCCCeEEEEEEe
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAEN 33 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~ 33 (147)
...|.|......|.+.|.|.+.+
T Consensus 70 ~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 70 DFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred EEEEEECCCChHHCEEEEEEEeC
Confidence 45678876444455556999864
No 358
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=86.55 E-value=2.4 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=15.3
Q ss_pred EEEEEeeeeecCCCCeEEEEEEec
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAENT 34 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~~ 34 (147)
...|.|......|.+.|.|++...
T Consensus 79 ~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 79 NCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEEEEccCChhhCeEEEEEEEcC
Confidence 456888764444444469998753
No 359
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=85.85 E-value=1.1 Score=24.53 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=14.8
Q ss_pred EEEEEeeeeecCCCCeEEEEEEe
Q psy1595 11 VSYVPFKPSADDDNSKLTCRAEN 33 (147)
Q Consensus 11 ~s~l~~~~~~~d~g~~y~C~~~~ 33 (147)
...|+|.....+|.+.|.|....
T Consensus 71 ~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 71 RYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred EEEEEECCCCHHHCEEEEEeEcC
Confidence 34588876555555556999863
No 360
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=83.86 E-value=3.9 Score=20.35 Aligned_cols=43 Identities=16% Similarity=0.538 Sum_probs=25.4
Q ss_pred EEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEe
Q psy1595 76 FECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 76 l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
|.|.... ..| ++||.++..+.. ....++.+..+ .++|+|....
T Consensus 3 ltC~s~~-sLP--iswYcN~TRLlR-------lt~~Tlt~~~l----tcNFtCV~qS 45 (71)
T PF11049_consen 3 LTCPSNA-SLP--ISWYCNGTRLLR-------LTQQTLTVVTL----TCNFTCVGQS 45 (71)
T ss_pred eecCCCC-CCc--ccEEECCceeee-------ecCCeEeeeee----eEEeeecCCC
Confidence 4565443 223 799999886542 23345555443 4788897543
No 361
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=82.99 E-value=4 Score=25.08 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=24.6
Q ss_pred EEEEEeee-eecCCCCeEEEEEEecccccccccccEEEEEEeC
Q psy1595 11 VSYVPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVHFV 52 (147)
Q Consensus 11 ~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~~~ 52 (147)
.+.|+|.. +.+|.|- |.|....-.. +...+....|.|..+
T Consensus 84 ~StItIknVt~sDeGc-Y~C~F~tfp~-G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 84 ESTILIKNVSLKDNGC-YTCIFNTLLS-KNNEKGVVCLNVTTD 124 (189)
T ss_pred cceEEEEeCChhhCeE-EEEEEEecCC-CCCceeEEEEEEEch
Confidence 35677765 5555555 5998864321 225566777888744
No 362
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=81.35 E-value=16 Score=25.56 Aligned_cols=36 Identities=11% Similarity=0.398 Sum_probs=26.8
Q ss_pred CeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 111 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
..+.+.++...|.|.|+|...-..-....+.+.+.|
T Consensus 81 Ysf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrV 116 (500)
T PHA02914 81 YSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRK 116 (500)
T ss_pred eEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEE
Confidence 357888899999999999987655444546676665
No 363
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=80.36 E-value=6.9 Score=20.83 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=23.9
Q ss_pred CccceecCCcEEEEeEeecC-----CCCceEEEEECCeeccc
Q psy1595 64 NPTDIKEGDDVYFECQVSAN-----PRAHRLLWFHNDKEIHH 100 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~~~-----~~~~~~~w~~~~~~~~~ 100 (147)
.+..+..|+.+...|..... .... +.|..++..++.
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~-I~Wkln~~~iP~ 51 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQ-IVWKLNGEKIPG 51 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTC-EEEECSSCESTC
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccce-EEEEECCEECCh
Confidence 56678889999999987631 2334 888888775443
No 364
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=69.87 E-value=13 Score=20.59 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=20.5
Q ss_pred EEeeeeecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 14 VPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 14 l~~~~~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
|.|.+...++.+.|.-++.+..+ ......+++.|+
T Consensus 73 LlIkaAq~qDSG~Y~LEvT~~sG--~V~~~~FqVsVF 107 (108)
T PF11465_consen 73 LLIKAAQPQDSGLYCLEVTNESG--KVCTKNFQVSVF 107 (108)
T ss_dssp EEESS-SGGG-EEEEEEEEETTS--CEEEEEEEEEEE
T ss_pred EEEeecCcccCceEEEEEEcCCC--cEEEEEEEEEee
Confidence 66775444444445778887663 455666676664
No 365
>COG5475 Uncharacterized small protein [Function unknown]
Probab=69.26 E-value=7.4 Score=18.64 Aligned_cols=16 Identities=25% Similarity=0.435 Sum_probs=13.2
Q ss_pred CeEEEEEEEeCCCCCc
Q psy1595 123 AGEYSCMAINTEGRGA 138 (147)
Q Consensus 123 ~g~y~C~~~n~~g~~~ 138 (147)
.|.|.|...+..|...
T Consensus 28 ~Gmy~C~Wf~g~g~~~ 43 (60)
T COG5475 28 DGMYECRWFDGYGVKR 43 (60)
T ss_pred CCeEEEEEecCCCccc
Confidence 3999999999888644
No 366
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=66.63 E-value=19 Score=19.60 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=35.2
Q ss_pred cEEEEeEe-ecCCCCceEEEEEC--Ceecc-c-cccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 73 DVYFECQV-SANPRAHRLLWFHN--DKEIH-H-NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 73 ~~~l~C~~-~~~~~~~~~~w~~~--~~~~~-~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
.+.-.|.. .|.|++. +.|.-+ |..-. . ..........+.+.+-.....|.-..+|.+.+..-.-. ..+.|.|
T Consensus 22 v~VA~CiSa~GrPpa~-ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~-~~~~L~v 98 (98)
T cd05890 22 MLVATCVSANGKPPSV-VRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFT-DSVTLNV 98 (98)
T ss_pred EEEEEEEcCCCcCCcE-eEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecccccc-ccEEecC
Confidence 34456885 5777776 999653 22100 0 00000011112233333445556689999998643322 3455543
No 367
>PHA03282 envelope glycoprotein E; Provisional
Probab=66.54 E-value=24 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.4
Q ss_pred EEeeCCeEEEEeeccCCCeEEEEEEEe
Q psy1595 106 IILSNISLVLQKVSRQSAGEYSCMAIN 132 (147)
Q Consensus 106 ~~~~~~~l~i~~~~~~d~g~y~C~~~n 132 (147)
....+.+|.|.++..+|+|.|...+..
T Consensus 119 vs~~n~tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 119 VAVVNGTLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred eeEecceEEEeeccccCCceEEEEecC
Confidence 344578899999999999999998643
No 368
>PHA03052 Hypothetical protein; Provisional
Probab=65.85 E-value=16 Score=18.41 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=23.9
Q ss_pred CccceecCCcEEEEeEee-cCC--CCceEEEEECCeec
Q psy1595 64 NPTDIKEGDDVYFECQVS-ANP--RAHRLLWFHNDKEI 98 (147)
Q Consensus 64 ~~~~~~~g~~~~l~C~~~-~~~--~~~~~~w~~~~~~~ 98 (147)
....+..|..+.+.|.+. +.+ .+. +.|..++...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~-V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDAD-VFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceE-EEEEeCCcEE
Confidence 345677899999999986 322 233 7888887655
No 369
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=61.62 E-value=24 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=19.1
Q ss_pred eEEEEEeeeeecCCCCeEEEEEEecc
Q psy1595 10 TVSYVPFKPSADDDNSKLTCRAENTL 35 (147)
Q Consensus 10 ~~s~l~~~~~~~d~g~~y~C~~~~~~ 35 (147)
..+.|++....+...+.|+|..+...
T Consensus 35 ~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 35 ETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred cCceEEeeccccccCCceEEEEEEEe
Confidence 45668888766666666799999865
No 370
>KOG3611|consensus
Probab=56.10 E-value=43 Score=25.74 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=34.4
Q ss_pred cEEEEeEeecCCCCceEEEEECCee----ccccccccEEe-eCCeEEEEeeccCCCeEEEEEEEeCC
Q psy1595 73 DVYFECQVSANPRAHRLLWFHNDKE----IHHNVTGGIIL-SNISLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 73 ~~~l~C~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
...+.|...+.-. . +.|+..... ........... ..+.+.+..+...|.|.|.|.+....
T Consensus 571 ~~~l~c~~~~~~a-~-~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 571 SEVLRCVPSSNQA-P-VVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred cceeecccccccc-c-eeeEeeccCccccceeccCcceeecccCceeEEEEeeccCcccccccccCc
Confidence 3566776654332 2 678743221 11111112222 23448888899999999999987654
No 371
>PHA03286 envelope glycoprotein E; Provisional
Probab=54.72 E-value=33 Score=24.46 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
...|.|.++..+.+|.|+-...|.-|......+.|.|
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV 162 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWV 162 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEE
Confidence 3569999999999999999999876665544455554
No 372
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=54.66 E-value=4.1 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=0.0
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
.+.|.|.++..+|+|.|+-...+.-+......+.|.|
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v 124 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTV 124 (439)
T ss_dssp -------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEE
Confidence 3569999999999999999998776654444455554
No 373
>PHA03283 envelope glycoprotein E; Provisional
Probab=49.72 E-value=50 Score=24.10 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.1
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
...|.|.++..+++|.|+-...+..+. ....+.|.|
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~-~~~vflvtV 168 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMM-KHSVFFVTV 168 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCce-EEEEEEEEe
Confidence 356999999999999999999986653 323455554
No 374
>PHA03240 envelope glycoprotein M; Provisional
Probab=46.56 E-value=76 Score=20.26 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=15.7
Q ss_pred CCeEEEEeeccCCCeEEE
Q psy1595 110 NISLVLQKVSRQSAGEYS 127 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~ 127 (147)
+++|.|.++..+|.|+|-
T Consensus 104 NstL~i~~vn~sd~~nYc 121 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYC 121 (258)
T ss_pred cceEEEEEEeecCcchhh
Confidence 578999999999999983
No 375
>PHA03189 UL14 tegument protein; Provisional
Probab=43.09 E-value=1.1e+02 Score=20.90 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=15.2
Q ss_pred EeeccCCCeEEEEEEEeCC
Q psy1595 116 QKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 116 ~~~~~~d~g~y~C~~~n~~ 134 (147)
.++..+-+|.|.|...|..
T Consensus 138 F~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 138 FRVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEEecccceEEEEecccc
Confidence 3556677899999999875
No 376
>PHA03112 IL-18 binding protein; Provisional
Probab=37.80 E-value=88 Score=18.49 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=38.5
Q ss_pred ecCCcEEEEeEeecC-CCCceEEEEECC-eecccc-c----------ccc----EEeeCCeEEEEeeccC-CCeEEEEEE
Q psy1595 69 KEGDDVYFECQVSAN-PRAHRLLWFHND-KEIHHN-V----------TGG----IILSNISLVLQKVSRQ-SAGEYSCMA 130 (147)
Q Consensus 69 ~~g~~~~l~C~~~~~-~~~~~~~w~~~~-~~~~~~-~----------~~~----~~~~~~~l~i~~~~~~-d~g~y~C~~ 130 (147)
..++.+.|.|.+-+. |.-..+.|...+ ...... . ... .......+.+.++... +.-.++|..
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 337889999998754 443447899654 221100 0 000 0011234666776644 334899998
Q ss_pred EeCCCCCc
Q psy1595 131 INTEGRGA 138 (147)
Q Consensus 131 ~n~~g~~~ 138 (147)
..+.+...
T Consensus 116 ~D~~~~~k 123 (141)
T PHA03112 116 MDLDGPIK 123 (141)
T ss_pred ecCCchhh
Confidence 87766543
No 377
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=37.79 E-value=1.1e+02 Score=19.54 Aligned_cols=78 Identities=26% Similarity=0.306 Sum_probs=40.2
Q ss_pred CeeEEEEEeee-eecCCCCeEEEEEEecccccc--cccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEeecCC
Q psy1595 8 NVTVSYVPFKP-SADDDNSKLTCRAENTLIANS--SMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANP 84 (147)
Q Consensus 8 ~~~~s~l~~~~-~~~d~g~~y~C~~~~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 84 (147)
-+..|+|++.. ...+.-...+|.+.-...... .......-.|+.+|...+... + ....|.+.=-|
T Consensus 35 ~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv~F~----------~--g~AVC~A~CVP 102 (211)
T PF02124_consen 35 FSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSVRFE----------D--GYAVCTARCVP 102 (211)
T ss_pred EEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEEEec----------C--CEEEEEcceee
Confidence 34566777733 333444556999876442111 123344555666666655431 1 23346554333
Q ss_pred CC-ceEEEEECCee
Q psy1595 85 RA-HRLLWFHNDKE 97 (147)
Q Consensus 85 ~~-~~~~w~~~~~~ 97 (147)
.. ..+.|+.++..
T Consensus 103 ~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 103 RGNVTLRWSVGDDP 116 (211)
T ss_pred CCCeEEEEEECCcc
Confidence 21 23899877654
No 378
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=37.66 E-value=57 Score=16.23 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=30.1
Q ss_pred eEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEE
Q psy1595 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145 (147)
Q Consensus 88 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~ 145 (147)
.+.|+++++....-.-......=++..-+.+.+...|.++..+....|... ..+...
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l-~~~~F~ 64 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVL-GSLRFS 64 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEE-EEEEEE
Confidence 378999987643210000000012233344455678999999887776643 334443
No 379
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=36.41 E-value=52 Score=15.60 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=12.6
Q ss_pred CCCeEEEEEEEeCCCCC
Q psy1595 121 QSAGEYSCMAINTEGRG 137 (147)
Q Consensus 121 ~d~g~y~C~~~n~~g~~ 137 (147)
..+..|.|.+.|..|..
T Consensus 8 dssnsflctvqnkng~~ 24 (65)
T PF13220_consen 8 DSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred cCCCceEEEEecccHhH
Confidence 44568999999877653
No 380
>KOG1026|consensus
Probab=31.79 E-value=45 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=26.8
Q ss_pred cceecCCcEEEEeEeecCCCCceEEEEECCeecc
Q psy1595 66 TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH 99 (147)
Q Consensus 66 ~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~ 99 (147)
..+..+..+.+.|...+.|.+. +.|+..+....
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~-~~~~~~~~~~~ 234 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPC-HYWFPNCLASS 234 (774)
T ss_pred hhhcccchheeeeecccCCCcc-eeeeccccccc
Confidence 4567789999999999999997 99988765543
No 381
>KOG1480|consensus
Probab=29.94 E-value=46 Score=25.68 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=20.6
Q ss_pred EEeee-eecCCCCeEEEEEEecccccccccccEEEEEE
Q psy1595 14 VPFKP-SADDDNSKLTCRAENTLIANSSMEDTWILNVH 50 (147)
Q Consensus 14 l~~~~-~~~d~g~~y~C~~~~~~~~~~~~~~~~~l~v~ 50 (147)
+++.+ ...|.++ |+|.+.+... ......+.+.++
T Consensus 185 li~~~arlsd~~n-ytc~a~ni~~--~r~~~~~~v~vy 219 (909)
T KOG1480|consen 185 LIISQARLSDSGN-YTCEATNIVA--KRKSDPATVQVY 219 (909)
T ss_pred ccccchhhhhccc-ceeeeehhhc--cccccceEEEEE
Confidence 44554 4455555 5999999774 344455555554
No 382
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=29.14 E-value=1.4e+02 Score=18.16 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=19.8
Q ss_pred eEEEEeeccCCCeEEEEEEEeCC
Q psy1595 112 SLVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 112 ~l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
.|.|.+...+|+|.|.-.+.-..
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECC
Confidence 48899999999999999987654
No 383
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=28.69 E-value=47 Score=16.82 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=12.0
Q ss_pred ecCCCCeEEEEEEec
Q psy1595 20 ADDDNSKLTCRAENT 34 (147)
Q Consensus 20 ~~d~g~~y~C~~~~~ 34 (147)
++|-+.-|-|.|.+.
T Consensus 58 kED~stDYAcIa~~k 72 (74)
T PF05083_consen 58 KEDPSTDYACIAKNK 72 (74)
T ss_pred ccCCCcCeeeeeccC
Confidence 677777789999874
No 384
>PHA03271 envelope glycoprotein C; Provisional
Probab=28.39 E-value=2.3e+02 Score=20.44 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=28.3
Q ss_pred CCCCeeEEEEEeeeeecCCCCeEEEEEEecccc-cccccccEEEEEEeCCceeEEe
Q psy1595 5 SDSNVTVSYVPFKPSADDDNSKLTCRAENTLIA-NSSMEDTWILNVHFVPRVVIHF 59 (147)
Q Consensus 5 ~~~~~~~s~l~~~~~~~d~g~~y~C~~~~~~~~-~~~~~~~~~l~v~~~p~~~~~~ 59 (147)
.++.+..|+|++.....+.-...+|.+.-.... ...+.+...-.|+.+|...+..
T Consensus 305 ~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv~F 360 (490)
T PHA03271 305 GRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISLAF 360 (490)
T ss_pred CCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEEEE
Confidence 344455666666443334444679998754421 1223334445566666655443
No 385
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=27.16 E-value=1.6e+02 Score=18.26 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=15.8
Q ss_pred EEEEeeccCCCeEEEEEEEeCC
Q psy1595 113 LVLQKVSRQSAGEYSCMAINTE 134 (147)
Q Consensus 113 l~i~~~~~~d~g~y~C~~~n~~ 134 (147)
+.+..+..+-.|.|+|...-..
T Consensus 95 mt~hQVN~DGaGP~~C~iD~tg 116 (184)
T PF11327_consen 95 MTIHQVNADGAGPFTCDIDETG 116 (184)
T ss_pred EEEEEecCCCCcCeEEEECCCC
Confidence 5566677666899999976543
No 386
>PHA03270 envelope glycoprotein C; Provisional
Probab=26.09 E-value=2.6e+02 Score=20.26 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=41.0
Q ss_pred CCCCeeEEEEEeeeeecC-CCCeEEEEEEecccc--cccccccEEEEEEeCCceeEEeccCCCccceecCCcEEEEeEee
Q psy1595 5 SDSNVTVSYVPFKPSADD-DNSKLTCRAENTLIA--NSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81 (147)
Q Consensus 5 ~~~~~~~s~l~~~~~~~d-~g~~y~C~~~~~~~~--~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 81 (147)
.++-+..|+|++-....+ .-..++|.+.-.... ....+....-.|+.+|.+.+... ++ ...|.+.
T Consensus 277 ~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~F~----------dG--~AVCtA~ 344 (466)
T PHA03270 277 RDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEMEFG----------GD--EAVCTAA 344 (466)
T ss_pred CCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEEEe----------CC--EEEEecc
Confidence 455556677766543222 223569988754321 12234445556776776655432 12 2235444
Q ss_pred cCCCCceEEEEECCee
Q psy1595 82 ANPRAHRLLWFHNDKE 97 (147)
Q Consensus 82 ~~~~~~~~~w~~~~~~ 97 (147)
=-|....+.|+.+...
T Consensus 345 CVPegV~l~W~V~D~~ 360 (466)
T PHA03270 345 CVPEGVTLAWLLGADP 360 (466)
T ss_pred ccCCCCEEEEEecCCC
Confidence 2233234888775543
No 387
>PHA03281 envelope glycoprotein E; Provisional
Probab=26.04 E-value=1.9e+02 Score=21.57 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=26.1
Q ss_pred CCeEEEEeeccCCCeEEEEEEEeCCCCCccccEEEEE
Q psy1595 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146 (147)
Q Consensus 110 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~s~~~~l~v 146 (147)
.+.|.|.++..+.+|.|+-......|......+.|.|
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtV 333 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKL 333 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEe
Confidence 3568999999999999999888655543322444544
No 388
>KOG0613|consensus
Probab=24.55 E-value=1.7e+02 Score=24.17 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=48.7
Q ss_pred ccceecCCcEEEEeEeecCCCCceEEEEECCeecccccc----ccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCc
Q psy1595 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVT----GGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138 (147)
Q Consensus 65 ~~~~~~g~~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 138 (147)
......+..+.+.|...+...+..+.|+..+........ +........+.+..+...+.+.|.|.+.|..|...
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccc
Confidence 334555777888898888776655788876544332211 11112234577788888888999999999887643
No 389
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=20.83 E-value=1.7e+02 Score=16.14 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=20.3
Q ss_pred cceecCCcEEEEeEeec----CCCCceEEEEECCeecc
Q psy1595 66 TDIKEGDDVYFECQVSA----NPRAHRLLWFHNDKEIH 99 (147)
Q Consensus 66 ~~~~~g~~~~l~C~~~~----~~~~~~~~w~~~~~~~~ 99 (147)
.....|.+..+.|.++. .|....+.|+..++.+.
T Consensus 11 ~~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLe 48 (110)
T PF09085_consen 11 EALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELE 48 (110)
T ss_dssp SSB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-T
T ss_pred hHhccCCCceeeeeeccccCCCCCeEEeeeeeCceeec
Confidence 34566888889999874 23333478988877653
No 390
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=20.67 E-value=1.5e+02 Score=15.47 Aligned_cols=55 Identities=16% Similarity=0.348 Sum_probs=31.6
Q ss_pred cEEEEeEeecCCCCceEEEEECCeeccccccccEEeeCCeEEEEeeccCCCeEEEEEEEeCCCCCc
Q psy1595 73 DVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138 (147)
Q Consensus 73 ~~~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 138 (147)
...+.+.+.+. ... +.|+.||..+.... ....+.. .....|.|+-.+....|...
T Consensus 31 ~~~l~l~a~~~-~~~-~~W~vdg~~~g~~~------~~~~~~~---~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGP-VYWFVDGEPLGTTQ------PGHQLFW---QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCc-EEEEECCEEcccCC------CCCeEEe---CCCCCeeEEEEEEcCCCCEE
Confidence 33444455444 224 99999999873221 1122322 23456899888877777643
No 391
>PHA02634 hypothetical protein; Provisional
Probab=20.53 E-value=71 Score=14.86 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=8.9
Q ss_pred cCCCCeEEEEE
Q psy1595 21 DDDNSKLTCRA 31 (147)
Q Consensus 21 ~d~g~~y~C~~ 31 (147)
.|...||.|+.
T Consensus 10 nDs~~YF~CK~ 20 (49)
T PHA02634 10 SDLEAYFMCKL 20 (49)
T ss_pred CCchheeEEec
Confidence 47778999987
Done!