RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1595
(147 letters)
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 108 bits (271), Expect = 1e-29
Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 11/148 (7%)
Query: 1 STSSSDSNVTV-SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHF 59
+ + VTV S PS + L C + +++ LNV + P V I
Sbjct: 182 EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHM---DRFKESLTLNVQYEPEVTI-- 236
Query: 60 GSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVS 119
+ + DV C+ ANP A W + + G + ++
Sbjct: 237 -EGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSL---PKGVEAQNRTLFFKGPIN 292
Query: 120 RQSAGEYSCMAINTEGRGASQPIILAVK 147
AG Y C A N G S + + +
Sbjct: 293 YSLAGTYICEATNPIGTR-SGQVEVNIT 319
Score = 47.8 bits (113), Expect = 2e-07
Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 8/131 (6%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRV-VIHFGSSLNPTDIKEGDDVYFECQV 80
+D C N + L V P + + L ++ + C
Sbjct: 102 EDEGVYICEFATFPTGNRESQLN--LTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTS 159
Query: 81 SANPRAHRLLWFHNDKEI----HHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
+ + W K G + L +C+ R
Sbjct: 160 ANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR 219
Query: 137 GASQPIILAVK 147
+ + L V+
Sbjct: 220 -FKESLTLNVQ 229
Score = 39.7 bits (92), Expect = 1e-04
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 23/100 (23%)
Query: 70 EGDDVYFECQVS---ANPRAHRLLWFHNDKEIHHNVT--------------------GGI 106
G DV C + + + ++ W + NV
Sbjct: 28 IGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRP 87
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
++ ++ L ++ + G Y C + L V
Sbjct: 88 SFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 102 bits (255), Expect = 2e-27
Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 9/146 (6%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFG 60
S + S PS+ D +TC+ E+ T L V++ P V I
Sbjct: 166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESF-EKPQLLTVNLTVYYPPEVSI--- 221
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR 120
S + ++ C +NP W + + L+++ V +
Sbjct: 222 SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL----PPFAVAQGAQLLIRPVDK 277
Query: 121 QSAGEYSCMAINTEGRGASQPIILAV 146
C N G ++ + + V
Sbjct: 278 PINTTLICNVTNALGARQAE-LTVQV 302
Score = 48.6 bits (115), Expect = 1e-07
Identities = 17/132 (12%), Positives = 31/132 (23%), Gaps = 14/132 (10%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQV- 80
+D TC S L V P+ + + C
Sbjct: 89 EDEGNYTCLFVTF--PQGSRSVDIWLRVLAKPQNTAE----VQKVQLTGEPVPMARCVST 142
Query: 81 SANPRAHRLLWFHNDKEI-----HHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
P A ++ W + + G + +L S+ +C +
Sbjct: 143 GGRPPA-QITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESF 201
Query: 136 RG-ASQPIILAV 146
+ L V
Sbjct: 202 EKPQLLTVNLTV 213
Score = 40.1 bits (93), Expect = 8e-05
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 26/108 (24%)
Query: 65 PTDI--KEGDDVYFECQVSANP----RAHRLLWFHNDKE----IHHNVTG---------- 104
PT + GD V C + +L W + + + H G
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 105 ------GIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
G L N SL + + + G Y+C+ + S I L V
Sbjct: 67 FVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 85.3 bits (211), Expect = 5e-22
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 16/120 (13%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC+ +S+ D L V F V+ + +EG+ + C +
Sbjct: 67 TCQTGQ-----TSLSDPVHLTVLFEWLVLQT-----PHLEFQEGETIMLRCHSWKDKPLV 116
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
++ +F N K + + + + + +G+Y C +S+P+ + V+
Sbjct: 117 KVTFFQNGKSQKFSHLDP------TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 62.9 bits (153), Expect = 2e-13
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 17/96 (17%)
Query: 53 PRVVIHFGSSLNPTD--IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN 110
P+ V+ L P + + D V CQ + +P + + WFHN I
Sbjct: 3 PKAVL----KLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT--------HT 50
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
K + +GEY+C T S P+ L V
Sbjct: 51 QPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLTV 83
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 79.0 bits (195), Expect = 2e-19
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A N ++E L V P+ I EG C NP+
Sbjct: 78 CCTANNG--VGGAVESCGALQVKMKPK----ITRPPINVKIIEGLKAVLPCTTMGNPKPS 131
Query: 88 RLLWFHNDKEIHHNVTGGI-ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ W D + N I +L + SL + V ++ AG+Y C+A N+ G S+ + L V
Sbjct: 132 -VSWIKGDSALREN--SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
Query: 147 K 147
+
Sbjct: 189 E 189
Score = 59.0 bits (143), Expect = 8e-12
Identities = 24/100 (24%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 49 VHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL 108
+ P + L D + F C V + P+ + W N I T I
Sbjct: 4 LPKAPVITTP----LETVDALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIR 58
Query: 109 SNIS-LVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
N L + V G Y C A N G L VK
Sbjct: 59 ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK 98
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 76.1 bits (187), Expect = 2e-18
Identities = 13/120 (10%), Positives = 43/120 (35%), Gaps = 16/120 (13%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C+ + + + L V ++ + + EG ++ C N +
Sbjct: 67 KCQHQQ-----VNESEPVYLEVFSDWLLLQA-----SAEVVMEGQPLFLRCHGWRNWDVY 116
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+++++ + + + + ++ + + + +G Y C + S+P+ + V
Sbjct: 117 KVIYYKDGEALKYWYENH------NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 59.9 bits (145), Expect = 3e-12
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 53 PRVVIHFGSSLNPTD--IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN 110
+ + SLNP I +G++V C + WFHN +N
Sbjct: 3 QKPKV----SLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TN 50
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
SL + + +GEY C S+P+ L V
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYLEV 83
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 78.5 bits (193), Expect = 5e-18
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC+A N+ S T + + + SS N +++ D V F C+ A
Sbjct: 442 TCQANNSA---SGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT- 497
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
LW+ N + + + + N +L L V+R A Y C N+ S P+ L V
Sbjct: 498 -YLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Score = 73.1 bits (179), Expect = 3e-16
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+++ TC+A N+ + + T + + F +S N +++ D V C+
Sbjct: 258 NNSGSYTCQAHNSD---TGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPE 314
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141
LW+ N++ + + + N +L L V+R G Y C N S P
Sbjct: 315 IQN--TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDP 372
Query: 142 IILAV 146
+IL V
Sbjct: 373 VILNV 377
Score = 71.1 bits (174), Expect = 2e-15
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 6/119 (5%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
T + + E T V+ SS N +++ D V F C+
Sbjct: 87 TLHVIKS--DLVNEEATGQFRVYPELPKPSI--SSNNSKPVEDKDAVAFTCEPETQD--A 140
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
LW+ N++ + + + N +L L V+R Y C N S +IL V
Sbjct: 141 TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV 199
Score = 68.1 bits (166), Expect = 2e-14
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C +N + D ILNV + P S + T + G ++ C ++NP A
Sbjct: 358 ECGIQNE--LSVDHSDPVILNVLYGPDDPTI---SPSYTYYRPGVNLSLSCHAASNPPAQ 412
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
W + G I L + ++ +++G Y+C A N+
Sbjct: 413 -YSWLID---------GNIQQHTQELFISNITEKNSGLYTCQANNSAS 450
Score = 66.1 bits (161), Expect = 9e-14
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+D + C +N ++ D+ ILNV + P S T + G+++ C +
Sbjct: 174 NDTASYKCETQNP--VSARRSDSVILNVLYGPDAPT---ISPLNTSYRSGENLNLSCHAA 228
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRG-ASQ 140
+NP A WF N L + ++ ++G Y+C A N++ +
Sbjct: 229 SNPPAQ-YSWFVNGTFQQSTQE---------LFIPNITVNNSGSYTCQAHNSDTGLNRTT 278
Query: 141 PIILAV 146
+ V
Sbjct: 279 VTTITV 284
Score = 65.7 bits (160), Expect = 1e-13
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 16/120 (13%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C +N+ +++ D L+V + P I S + G ++ C ++NP
Sbjct: 536 VCGIQNS--VSANRSDPVTLDVLYGPDTPII---SPPDSSYLSGANLNLSCHSASNPSPQ 590
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
W N H L + K++ + G Y+C N G + I+ ++
Sbjct: 591 -YSWRINGIPQQHTQV---------LFIAKITPNNNGTYACFVSNLAT-GRNNSIVKSIT 639
Score = 48.8 bits (116), Expect = 9e-08
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 19/101 (18%)
Query: 65 PTDIKEGDDVYFECQVSANPRAHRLLWF-----HNDKEIHHNVTGG-------------I 106
P ++ EG +V W+ +++I V G I
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLFG-YSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
I N SL++Q + + G Y+ I ++ V
Sbjct: 67 IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY 107
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 74.4 bits (183), Expect = 9e-18
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 13/120 (10%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C+ E+ + + L V VP F + C+ P
Sbjct: 76 WCQVEDG--GETEISQPVWLTVEGVP----FFTVEPKDLAVPPNAPFQLSCEAVGPPEPV 129
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
++W+ +I VL + +SC A N +G +S+ + ++
Sbjct: 130 TIVWWRGTTKIGGPAPS-------PSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 61.4 bits (149), Expect = 9e-13
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 53 PRVVIHFGSSLNPTDI--KEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN 110
+++ P + +G V C V + W + + + I +S
Sbjct: 3 LKLMGA------PVKLTVSQGQPVKLNCSVEGMEEPD-IQWVKDGAVVQNLDQLYIPVSE 55
Query: 111 I----SLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L L+ V R AG Y C + SQP+ L V+
Sbjct: 56 QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 96
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 75.2 bits (185), Expect = 9e-18
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 7/123 (5%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVI---HFGSSLNPTDIKEGDDVYFECQVSANP 84
C AEN ++ L ++ + I+ G V C+ NP
Sbjct: 81 ECVAENG--VGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP 138
Query: 85 RAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
+ W N ++ + L + L ++ + G+Y C+A N+ G S+ L
Sbjct: 139 TP-NIYWIKNQTKVDMS-NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNL 196
Query: 145 AVK 147
VK
Sbjct: 197 YVK 199
Score = 55.2 bits (133), Expect = 3e-10
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN-----IS 112
++ G F C +P ++W N K++ + +L I
Sbjct: 8 EIIRKPQNQGVRVGGVASFYCAARGDPPP-SIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 113 LVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ + + Y C+A N G S L +
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY 101
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 74.0 bits (182), Expect = 2e-17
Identities = 22/109 (20%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C+A + + E T +L ++ F ++P + K+G+D C+VS++P
Sbjct: 74 RCQATDA--KGQTQEATVVLEIYQKLT----FREVVSPQEFKQGEDAEVVCRVSSSPAP- 126
Query: 88 RLLWFHNDKEIHHNVTGGI-ILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+ W ++++E+ +L+N +L + +++ G Y C
Sbjct: 127 AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 175
Score = 54.0 bits (130), Expect = 5e-10
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 52 VPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN- 110
+ +V I SL+ ++ G+ +F C P + W++ E + ++
Sbjct: 2 LLQVTI----SLSKVELSVGESKFFTCTAIGEPESI--DWYNPQGEKIISTQRVVVQKEG 55
Query: 111 --ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L + + + AG Y C A + +G+ ++L +
Sbjct: 56 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 94
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 75.0 bits (184), Expect = 8e-17
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A++ + E + LNV+ +P + + I G+ + C V+ P
Sbjct: 506 KCIAKSKV---GVAEHSAKLNVYGLPYI-----RQMEKKAIVAGETLIVTCPVAGYPIDS 557
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQS-AGEYSCMAINTEGRGASQPIILAV 146
++W +++ + N + N +L+++ V R S Y+C+A N EG A + + V
Sbjct: 558 -IVWERDNRALPIN-RKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQV 615
Query: 147 K 147
Sbjct: 616 M 616
Score = 70.3 bits (172), Expect = 3e-15
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 9/123 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC A+N S + + V +PR++ + + G + C V
Sbjct: 596 TCVAKNQ--EGYSARGSLEVQVMVLPRIIPF---AFEEGPAQVGQYLTLHCSVPGGDLPL 650
Query: 88 RLLWFHNDKEIH---HNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
+ W + + I T + L ++ V AG ++C A N G L
Sbjct: 651 NIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT-TPL 709
Query: 145 AVK 147
V
Sbjct: 710 NVY 712
Score = 70.0 bits (171), Expect = 5e-15
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
TC A N + LNV+ PR ++ +G D EC+ P+
Sbjct: 693 TCHARNLAGHQQFTTP----LNVYVPPRWIL----EPTDKAFAQGSDAKVECKADGFPKP 744
Query: 87 HRLLWFHNDKEIHHN-----VTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141
+ W + + I + +L + + + + G Y C AIN G G S
Sbjct: 745 Q-VTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAV 803
Query: 142 IILAVK 147
I+++V+
Sbjct: 804 IMISVQ 809
Score = 68.0 bits (166), Expect = 2e-14
Identities = 20/154 (12%), Positives = 46/154 (29%), Gaps = 14/154 (9%)
Query: 2 TSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVV----I 57
+ + V +D CR ++ L + + T V P +
Sbjct: 194 LVLPSGELHIREV----GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHN----VTGGIILSNISL 113
+ + + C P W+ + + + + +L
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPV-FRWYKFIEGTTRKQAVVLNDRVKQVSGTL 308
Query: 114 VLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+++ + +G+Y C+ N+ G S +L V
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVT 341
Score = 68.0 bits (166), Expect = 2e-14
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 16/108 (14%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C N++ +L V I + G F CQ + NP
Sbjct: 322 LCVVNNSV---GGESVETVLTVTAPLSAKID----PPTQTVDFGRPAVFTCQYTGNPIKT 374
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+ W + K I H S L ++ V ++ G Y C N
Sbjct: 375 -VSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRE 413
Score = 63.0 bits (153), Expect = 1e-12
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
A + ++ P + N D EC+ S NP
Sbjct: 15 AAVALIAC-GSQTLAANPPDADQKGPVFLKE---PTNRIDFSNSTGAEIECKASGNPMPE 70
Query: 88 RLLWFHNDKEIHHNVTGG-IILSNISLVLQKVSRQS------AGEYSCMAINTEGRGASQ 140
++W +D +V G I S+ LV + A Y+C+A N G S+
Sbjct: 71 -IIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 129
Query: 141 PIILAV 146
+ +
Sbjct: 130 DVHVRA 135
Score = 57.6 bits (139), Expect = 9e-11
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C N S E + L + + ++ G V+ +C NP
Sbjct: 405 QCFVRNDR---ESAEASAELKLG-GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP- 459
Query: 88 RLLWFHNDKEI----HHNVTGGIILSNI---SLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
+ W + K+I + V + ++ L + V G Y C+A + G A
Sbjct: 460 EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGV-AEH 518
Query: 141 PIILAVK 147
L V
Sbjct: 519 SAKLNVY 525
Score = 51.9 bits (124), Expect = 9e-09
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQV---SANP 84
C A N + S +VH V ++ + +N + G+ +C + A+
Sbjct: 116 ACLARNQFGSIIS------RDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 169
Query: 85 RAHRLLWFHNDKEIHHNVTGG----IILSNISLVLQKVSRQ-SAGEYSCMAINTEGR 136
+ W +++E + ++L + L +++V + Y C +
Sbjct: 170 VE-VVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG 225
Score = 25.7 bits (56), Expect = 7.1
Identities = 2/24 (8%), Positives = 9/24 (37%)
Query: 113 LVLQKVSRQSAGEYSCMAINTEGR 136
+ + + ++ +A+ G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGS 24
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 72.1 bits (177), Expect = 9e-17
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A ++ I+ + VP + S N T + G+++ F C+ S +P
Sbjct: 73 RCEGRV--EARGEIDFRDIIVIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGSPEPA 129
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+ WF N K I N + SN L ++ + G Y C A N G
Sbjct: 130 -ISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 176
Score = 61.7 bits (150), Expect = 8e-13
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 59 FGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI-ILSNISLVLQK 117
F ++P + K+G+D C+VS++P + W ++++E+ +L+N +L +
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 118 VSRQSAGEYSCMAIN-TEGRGASQPIILAV 146
+++ G Y C G + II+ V
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIV 93
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 74.5 bits (183), Expect = 1e-16
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 6/122 (4%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIK--EGDDVYFECQVSANPR 85
C A N A++ + + + P + P+++ EG D EC VS P
Sbjct: 193 RCSARNP--ASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 86 AHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145
W ++ I +L +L++ V+ +G Y+C+ S L
Sbjct: 251 PS-FTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN-ISASAELT 308
Query: 146 VK 147
V
Sbjct: 309 VL 310
Score = 69.5 bits (170), Expect = 6e-15
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Query: 5 SDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLN 64
+ ++ + + D C A + S + T + V R F S
Sbjct: 75 PNGSLLIQNILHSRHHKPDEGLYQCEASLG-DSGSIISRTAKVMVAGPLR----FLSQTE 129
Query: 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG--IILSNISLVLQKVSRQS 122
GD V +C+V +P + W N ++++ ++L + +L + ++
Sbjct: 130 SITAFMGDTVLLKCEVIGDPMPT-IHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGD 188
Query: 123 AGEYSCMAINTEGRGASQPIILAVK 147
+G Y C A N + +
Sbjct: 189 SGVYRCSARNPASTRTGNEAEVRIL 213
Score = 65.2 bits (159), Expect = 2e-13
Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 12/121 (9%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC ++ + L V P + H + E D+ FEC VS P
Sbjct: 291 TCVVTYKN---ENISASAELTVLVPPWFLNH----PSNLYAYESMDIEFECAVSGKPVP- 342
Query: 88 RLLWFHNDKEIHHNVTGGI-ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ W N + + I+ +L + V + G Y C+A N G A L V
Sbjct: 343 TVNWMKNGDVVIPS--DYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGN-AQSSAQLIV 399
Query: 147 K 147
Sbjct: 400 P 400
Score = 58.7 bits (142), Expect = 3e-11
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 14/124 (11%)
Query: 30 RAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRL 89
R + L S V G +V C ++ +
Sbjct: 2 RWGSEL---ESSHHHHHHGGRRSLHFVSEPSD----AVTMRGGNVLLNCSAESDRGVPVI 54
Query: 90 LWFHNDKEIHHNVTGGI-ILSNISLVLQKV-----SRQSAGEYSCMA-INTEGRGASQPI 142
W + + + L N SL++Q + + G Y C A + G S+
Sbjct: 55 KWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTA 114
Query: 143 ILAV 146
+ V
Sbjct: 115 KVMV 118
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 71.4 bits (175), Expect = 1e-16
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C + E T + + F ++ P + KEG+D C V ++
Sbjct: 78 KCVVTAE--DGTQSEATVNVKIFQKLM----FKNAPTPQEFKEGEDAVIVCDVVSSLPP- 130
Query: 88 RLLWFHNDKEIHHNVTGGI-ILSNISLVLQKVSRQSAGEYSCMAINTEG 135
++W H +++ +LSN L ++ + + G Y C
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Score = 59.8 bits (145), Expect = 4e-12
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 52 VPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEI-----HHNVTGGI 106
V +V I + +I G+ +F CQV+ + + + WF + E
Sbjct: 2 VLQVDIV----PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN 57
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ +L + + AG Y C+ +G + + + +
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 71.1 bits (174), Expect = 2e-16
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 16/120 (13%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C+ S++ D L VH ++ KE D ++ C N H
Sbjct: 70 RCQTNL-----STLSDPVQLEVHIGWLLL-----QAPRWVFKEEDPIHLRCHSWKNTALH 119
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
++ + N K+ + + K + + +G Y C + +S+ + + +
Sbjct: 120 KVTYLQNGKDRKYFHHNS------DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173
Score = 61.4 bits (149), Expect = 8e-13
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 52 VPRVVIHFGSSLNP--TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS 109
+P+ V+ L P + E D V +CQ + +P + WFHN+ I
Sbjct: 5 LPKAVV----FLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------Q 52
Query: 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
S + + +GEY C + S P+ L V
Sbjct: 53 ASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEV 86
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 71.0 bits (174), Expect = 3e-16
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 14/129 (10%)
Query: 28 TCRAENTL-IANSSMEDTWILNVH---FVPRVVIHFGSSLNPTDIKEGDDVYFECQVSAN 83
C A N + + S L V +PR ++ C S N
Sbjct: 80 ECVASNNVGEISVSTR----LTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN 135
Query: 84 PRAHRLLWFHNDKEIHHNVTGGII-----LSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138
P + WF + + + G I S +L +++ G+Y C+A N+ G
Sbjct: 136 PDP-EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRY 194
Query: 139 SQPIILAVK 147
S P L V+
Sbjct: 195 SAPANLYVR 203
Score = 54.8 bits (132), Expect = 3e-10
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNIS---LV 114
F + G F CQ + +PR +++W K++ + I + S L
Sbjct: 8 RFTRTPVDQTGVSGGVASFICQATGDPRP-KIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 115 LQKVSRQS-AGEYSCMAINTEGRGASQPIILAVK 147
+Q + Y C+A N G S L V
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVL 99
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 72.0 bits (176), Expect = 4e-16
Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 16/132 (12%)
Query: 16 FKPSADDDNSKLTCRAENTLIANSSMEDTWI-LNVHFVPRVVIHFGSSLNPTDIKEGDDV 74
K + +D+ +C A + ++ L V + PR+ E
Sbjct: 146 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPG--NWTWPENSQQ 203
Query: 75 YFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134
CQ NP L + G L V+R G Y C A +T+
Sbjct: 204 TPMCQAWGNPLP-ELKCLKD---------GTFPLP--IGESVTVTRDLEGTYLCRARSTQ 251
Query: 135 GRGASQPIILAV 146
G ++ + + V
Sbjct: 252 GE-VTREVTVNV 262
Score = 51.6 bits (123), Expect = 8e-09
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 22/150 (14%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNS-KLTCRAENTLIANSSMEDTWILNVHFVPRVVIHF 59
T + ++ + +A+D+ + +LTC N S E + ++ P +
Sbjct: 49 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVIL---GNQSQETLQTVTIYSFPAPNV-- 103
Query: 60 GSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVS 119
L ++ EG +V +C+ ++ V + L+L+
Sbjct: 104 --ILTKPEVSEGTEVTVKCEAHPRA---KVTLN--------GVPAQPLGPRAQLLLKATP 150
Query: 120 RQSAGEYSCMAINT---EGRGASQPIILAV 146
+ +SC A + +Q L V
Sbjct: 151 EDNGRSFSCSATLEVAGQLIHKNQTRELRV 180
Score = 40.8 bits (95), Expect = 4e-05
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Query: 65 PTDIKEGDDVYFECQVSANPRA--HRLLWFHNDKEIHHNVT-GGIILSNISLVLQKVSRQ 121
P ++ C + ++ D+ ++ VT G S + V +
Sbjct: 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 71
Query: 122 SAGEYSCMAINTEGR 136
+C I
Sbjct: 72 GTQRLTCAVILGNQS 86
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 70.7 bits (173), Expect = 4e-16
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 16/120 (13%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C+ + S++ D L VH ++ KE D ++ C N H
Sbjct: 70 RCQTQL-----STLSDPVQLEVHIGWLLL-----QAPRWVFKEEDPIHLRCHSWKNTALH 119
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
++ + N K + + K + + +G Y C + +S+ + + +
Sbjct: 120 KVTYLQNGKGRKYFHHNS------DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT 173
Score = 62.2 bits (151), Expect = 7e-13
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 17/97 (17%)
Query: 52 VPRVVIHFGSSLNP--TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS 109
+P+ V+ L P + E D V +CQ + +P WFHN+ I
Sbjct: 5 LPKAVV----FLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS--------Q 52
Query: 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
S + + +GEY C + S P+ L V
Sbjct: 53 ASSYFIDAATVDDSGEYRCQTQLSTL---SDPVQLEV 86
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 72.3 bits (177), Expect = 6e-16
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 47 LNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI 106
L V P + +E + EC + N + + W + K +
Sbjct: 1 LPVDKYPVLKDQ----PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAA 56
Query: 107 I-LSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ SLV + G Y C A G +S+ I
Sbjct: 57 LRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 97
Score = 69.2 bits (169), Expect = 8e-15
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC +N + + L V P+ +K+G DV C+V+ P +
Sbjct: 286 TCEVDNG--VGKPQKHSLKLTVVSAPKYEQKP---EKVIVVKQGQDVTIPCKVTGLPAPN 340
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
++W HN K + G +++ LV++ V G Y C A N G
Sbjct: 341 -VVWSHNAKPLSG---GRATVTDSGLVIKGVKNGDKGYYGCRATNEHG 384
Score = 68.8 bits (168), Expect = 9e-15
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 9/128 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIH----FGSSLNPTDIKEGDDVYFECQVSAN 83
C A+N + + + + K GD C +N
Sbjct: 180 VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSN 239
Query: 84 PRAHRLLWFHNDKEIHHNVTGGI----ILSNISLVLQKVSRQSAGEYSCMAINTEGRGAS 139
P + +F N K+++ N I S L+ + + G Y+C N G+
Sbjct: 240 PMGY-PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 140 QPIILAVK 147
+ L V
Sbjct: 299 HSLKLTVV 306
Score = 54.1 bits (130), Expect = 1e-09
Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C AE SS + ++ + + EG +C +
Sbjct: 78 QCFAETPAGVASSRVIS--FRKTYLIA----SPAKTHEKTPIEGRPFQLDCVLPNAYPKP 131
Query: 88 RLLWFHNDKEIHHNVTGG------IILSNISLVLQKVSRQSA---GEYSCMAINTEGRGA 138
+ W N + +L V+++ +Y C A N
Sbjct: 132 LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE 191
Query: 139 SQPIILAVK 147
+ +K
Sbjct: 192 VVLVEYEIK 200
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 72.1 bits (176), Expect = 9e-16
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC A + L + +++ + VH P V + + G+ V + P
Sbjct: 306 TCAASSGL---MTKKNSTFVRVHEKPFVAF-GSGMESLVEATVGERVRIPAKYLGYPPPE 361
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRG-ASQPIILAV 146
+ W+ N + N T I + L + +VS + G Y+ + N + S + L V
Sbjct: 362 -IKWYKNGIPLESNHT---IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVV 417
Query: 147 K 147
Sbjct: 418 Y 418
Score = 70.9 bits (173), Expect = 2e-15
Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A++ + + + + RV +L G+ + C S NP
Sbjct: 641 VCLAQDRK---TKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ 697
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
++WF +++ + + + N +L +++V ++ G Y+C A + G A ++
Sbjct: 698 -IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIE 755
Score = 60.9 bits (147), Expect = 7e-12
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 15/137 (10%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+ C A+ + S + + V R+ S + ++ G+ + C
Sbjct: 193 SYAGMVFCEAKI---NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249
Query: 82 ANPRAH-RLLWFHNDKEIHHNVT----------GGIILSNISLVLQKVSRQSAGEYSCMA 130
W + + H + +L + V+R G Y+C A
Sbjct: 250 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 309
Query: 131 INTEGRGASQPIILAVK 147
+ + V
Sbjct: 310 SSGLMT-KKNSTFVRVH 325
Score = 60.2 bits (145), Expect = 1e-11
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 4/118 (3%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVV-IHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
C T +A+ + + P + + + + V C S +
Sbjct: 102 KCFYRETDLASVI---YVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLN 158
Query: 87 HRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
L + +K + S + AG C A + S I+
Sbjct: 159 VSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIV 216
Score = 54.8 bits (131), Expect = 9e-10
Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 31/140 (22%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+ ++ C A N + E +V P + + E + V C
Sbjct: 523 NVSALYKCEAVNKV---GRGERVISFHVTRGPEITL-----QPDMQPTEQESVSLWCTAD 574
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILS----------------------NISLVLQKVS 119
+ + L W+ + G + + + L+ S
Sbjct: 575 RSTFEN-LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNAS 633
Query: 120 RQSAGEYSCMAINTEGRGAS 139
Q G+Y C+A + + +
Sbjct: 634 LQDQGDYVCLAQDRKTKKRH 653
Score = 50.1 bits (119), Expect = 4e-08
Identities = 25/155 (16%), Positives = 38/155 (24%), Gaps = 38/155 (24%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
T N I+ L V+ VP + + G C V A P H
Sbjct: 397 TVILTNP-ISKEKQSHVVSLVVY-VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPH 454
Query: 88 RLLWFHNDKEIHHNVTGGIIL-----------------------------------SNIS 112
+ W+ +E N + +
Sbjct: 455 HIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV 514
Query: 113 LVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L + + Y C A+N GR + I V
Sbjct: 515 STLVIQAANVSALYKCEAVNKVGR-GERVISFHVT 548
Score = 48.6 bits (115), Expect = 1e-07
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 20/113 (17%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C S + L++ PR+ I + IK + C+ +
Sbjct: 13 LCVETRAA---SVGLPSVSLDL---PRLSIQ----KDILTIKANTTLQITCRGQRDLD-- 60
Query: 88 RLLWFHNDKEIHHNVTGGIILSN-----ISLVLQKVSRQSAGEYSCMAINTEG 135
W + + + + +L + KV G Y C T+
Sbjct: 61 ---WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 67.0 bits (164), Expect = 1e-15
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 59 FGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN--ISLVLQ 116
+ +EG V + C++ ++ ++ W+ +++ ++ I + L ++
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63
Query: 117 KVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+++ G Y C +N G S L VK
Sbjct: 64 DITKLDDGTYRCKVVNDYGE-DSSYAELFVK 93
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 70.6 bits (173), Expect = 1e-15
Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C+A + + E T +L ++ F ++P + K+G+D C+VS++P
Sbjct: 76 RCQATDA--KGQTQEATVVLEIYQKL----TFREVVSPQEFKQGEDAEVVCRVSSSPAPA 129
Query: 88 RLLWFHNDKEIHHNVTGGI-ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ W ++++E+ +L+N +L + +++ G Y C I+ +
Sbjct: 130 -VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
Score = 70.2 bits (172), Expect = 2e-15
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 5/120 (4%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A ++ I+ + VP + S N T + G+++ F C+ S +P
Sbjct: 169 RCEGRVE--ARGEIDFRDIIVIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGSPEPA 225
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ WF N K I N + SN L ++ + G Y C A N G + L V
Sbjct: 226 -ISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVF 283
Score = 61.4 bits (149), Expect = 3e-12
Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 52 VPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL--- 108
+ +V I L+ ++ G+ +F C P + + W++ E + ++
Sbjct: 4 LLQVTIS----LSKVELSVGESKFFTCTAIGEPES--IDWYNPQGEKIISTQRVVVQKEG 57
Query: 109 SNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L + + + AG Y C A + +G+ ++L +
Sbjct: 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 69.5 bits (170), Expect = 1e-15
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 21/131 (16%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVP-----------RVVIHFGSSLNPTDIKEGDDVYF 76
CR N L+V +P + + G +
Sbjct: 81 VCRVNNN--FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVL 138
Query: 77 ECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
+C +P H WF N+ + H + ++ V + G Y C N
Sbjct: 139 QCVAVGSPIPH-YQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTYWCHVYNDRDS 190
Query: 137 GASQPIILAVK 147
S+ + + +
Sbjct: 191 QDSKKVEIIID 201
Score = 63.4 bits (154), Expect = 3e-13
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 49 VHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL 108
V ++ ++ S + G V C+ + +P WF +KEI + T
Sbjct: 15 VPRGSKITVNPES----KAVLAGQFVKLCCRATGHPFVQ-YQWFKMNKEIPNGNTS---- 65
Query: 109 SNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L+ V + AG Y C N SQ L V
Sbjct: 66 ---ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVC 101
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 71.4 bits (175), Expect = 1e-15
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC A N + L V PR + S +K+ + +EC++ +P
Sbjct: 269 TCYASNVA---GKDSCSAQLGVQEPPRFIKKLEPS---RIVKQDEHTRYECKIGGSPEI- 321
Query: 88 RLLWFHNDKEIH--HNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145
++LW+ ++ EI + S L + +S + +G+Y+C A N G AS L
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLK 380
Query: 146 VK 147
VK
Sbjct: 381 VK 382
Score = 70.2 bits (172), Expect = 4e-15
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC+AEN++ A +S + +L + ++ F L G V FEC+++ +
Sbjct: 77 TCKAENSVGAVAS---SAVLVIK-ERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQ 132
Query: 88 RLLWFHNDKEIHHN--VTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145
+ W+ + + + + + I + +L + + + G+Y+C A N G AS L
Sbjct: 133 -VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT-ASSSAKLT 190
Query: 146 VK 147
+
Sbjct: 191 LS 192
Score = 67.9 bits (166), Expect = 2e-14
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A N L SS + L + V F D+ G+ F+C V+
Sbjct: 173 NCSASNPLGTASS---SAKLTL-SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK 228
Query: 88 RLLWFHNDKEIHHNVTGGIIL--SNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145
+ W +++EI + L + +L + KV++ AG+Y+C A N G+ S L
Sbjct: 229 -ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLG 286
Query: 146 VK 147
V+
Sbjct: 287 VQ 288
Score = 66.4 bits (162), Expect = 7e-14
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
TC A N A+SS L V P F +P + +G DV+ EC++ P
Sbjct: 363 TCEAHNAAGSASSSTS----LKVKEPPV----FRKKPHPVETLKGADVHLECELQGTPPF 414
Query: 87 HRLLWFHNDKEIHHNVTGGIILSN---ISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143
++ W + +E+ I+S S+ + V GEY C A N G
Sbjct: 415 -QVSWHKDKRELRSG-KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCV-GS 471
Query: 144 LAVK 147
+ +K
Sbjct: 472 ITLK 475
Score = 66.4 bits (162), Expect = 7e-14
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 14/124 (11%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
C+A N + + + PR F L+ G++V + +
Sbjct: 456 QCKASNDVGSDTCVGS----ITLKAPPR----FVKKLSDISTVVGEEVQLQATIEGAEPI 507
Query: 87 HRLLWFHNDKEIHHNVTGGIIL---SNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143
+ WF + EI I + +L + +AG+Y+C N G
Sbjct: 508 -SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGT-QECFAT 565
Query: 144 LAVK 147
L+V
Sbjct: 566 LSVL 569
Score = 61.4 bits (149), Expect = 4e-12
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI- 111
P + L + G+ + +C+V P + W+ ++ + N
Sbjct: 6 PYFIEP----LEHVEAAIGEPITLQCKVDGTPEIR-IAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 112 -SLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
SLV+ KV GEY+C A N+ G + +L +K
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGA-VASSAVLVIK 96
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 66.6 bits (163), Expect = 2e-15
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 47 LNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI 106
+ P F S L + EG D +C V P R+ W N + I +
Sbjct: 6 SGMEVAPS----FSSVLKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPIQYA-RSTC 59
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
L +Q + G Y+C+A N G+
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQ 89
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 66.5 bits (163), Expect = 2e-15
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN---ISLV 114
F SL ++EG DV +V P+ + W N + + + + L
Sbjct: 7 TFKVSLMDQSVREGQDVIMSIRVQGEPKPV-VSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 115 LQKVSRQSAGEYSCMAINTEG 135
+ R AG Y+C A+N G
Sbjct: 66 ILAAERGDAGFYTCKAVNEYG 86
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 68.6 bits (168), Expect = 2e-15
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 15/126 (11%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
TC A N + +S + L + P+ + G + P
Sbjct: 79 TCIATNEVGEVETSSK----LLLQATPQFHPGY-PLKEKYYGAVGSTLRLHVMYIGRPVP 133
Query: 87 HRLLWFHNDKEIHHNVTGGIILSN----ISLVLQKVSRQS-AGEYSCMAINTEGRGASQP 141
+ WFH K + + I + N LV++ V R++ AG+Y N G
Sbjct: 134 -AMTWFHGQKLLQ--NSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT-VDAI 189
Query: 142 IILAVK 147
+ + ++
Sbjct: 190 LDVEIQ 195
Score = 60.1 bits (146), Expect = 3e-12
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN--ISLVL 115
+ K G+ CQ+ P + W+ KE+ + + +L +
Sbjct: 9 GIRKEMKDVTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 116 QKVSRQSAGEYSCMAINTEGR 136
++ G Y+C+A N G
Sbjct: 68 MTEEQEDEGVYTCIATNEVGE 88
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 66.6 bits (163), Expect = 2e-15
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI----SL 113
F L I EG V F C+V+ NP+ ++ WF + K+I I ++ SL
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 114 VLQKVSRQSAGEYSCMAINTEGR 136
+ G Y+ MA N +GR
Sbjct: 69 HTTASTLDDDGNYTIMAANPQGR 91
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 66.7 bits (163), Expect = 3e-15
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----ISL 113
F + EGD V ECQ+SA P +L W N++ + N + + ++L
Sbjct: 17 MFIYKPQSKKVLEGDSVKLECQISAIPPP-KLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 114 VLQKVSRQSAGEYSCMAINTEGR 136
+++ V+++ AG Y+ A+N G
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGV 98
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 69.6 bits (170), Expect = 3e-15
Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 7/130 (5%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+ C A M + L V V G+ C S
Sbjct: 154 IQSQDYQCSALMG--GRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSAS 211
Query: 82 ANPRAHRLLWFHNDKEI----HHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRG 137
+ + HN+ ++ + ++L L +V Q AG YSC+A N +G+
Sbjct: 212 SVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGK- 270
Query: 138 ASQPIILAVK 147
S + V
Sbjct: 271 HSTSMFFRVV 280
Score = 65.4 bits (159), Expect = 1e-13
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 6/120 (5%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C + S+ L V R + + E D C ++
Sbjct: 67 RCTEPGDPLGGSA---AIHLYVKDPARP---WNVLAQEVVVFEDQDALLPCLLTDPVLEA 120
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ T + + + +Y C A+ + S I L V+
Sbjct: 121 GVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180
Score = 39.9 bits (93), Expect = 1e-04
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+K G V C + + W D + T S+ L + Q+ G Y
Sbjct: 16 VKPGATVTLRCVGNGSVE-----W---DGPPSPHWTLYSDGSSSILSTNNATFQNTGTYR 67
Query: 128 CMAINTEGRGASQPIILAVK 147
C G++ I L VK
Sbjct: 68 CTEPGDPLGGSAA-IHLYVK 86
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 68.4 bits (167), Expect = 3e-15
Identities = 24/149 (16%), Positives = 59/149 (39%), Gaps = 13/149 (8%)
Query: 4 SSDSNVTVSYVPFKPSADDDNSKLTCRAEN-------TLIANSSMEDTWILNVHFVPRVV 56
D N + + + D+D T + ++ T++ + F +
Sbjct: 53 HIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEW 112
Query: 57 I-----HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI 111
I HF L+ + +V +C+V+ + ++W+ +++EI +
Sbjct: 113 IRKQGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 171
Query: 112 SLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
+L++ + S++ AG Y + + G+ S+
Sbjct: 172 TLLITEFSKKDAGIYEVILKDDRGKDKSR 200
Score = 58.4 bits (141), Expect = 1e-11
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 56 VIHFGSSLNPTDIKEGDDVYFECQV-SANPRAHRLLWFHNDKEIHHNVTGGIILSN---- 110
+ F S +I E V F Q + A ++ + N+KEI + +
Sbjct: 2 IDPFTKSELAVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEGR 136
I + ++K+ + G Y+ + +
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKAT 86
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 65.8 bits (161), Expect = 4e-15
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----ISL 113
+ + G + F V + P A + W+HN E+ + I +N ++L
Sbjct: 10 RITLRMRSHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQES--SKIHYTNTSGVLTL 66
Query: 114 VLQKVSRQSAGEYSCMAINTEG 135
+ +G Y + N +G
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKG 88
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 69.5 bits (170), Expect = 4e-15
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVI---HFGSSLNPTDIKEGDDVYFEC 78
D + C A+N++ + L V ++ + ++ C
Sbjct: 74 RDENVYECVAQNSVGEITV---HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLC 130
Query: 79 QVSANPRAHRLLWFHNDKEIHHNVTGGII--LSNISLVLQKVSRQSAGEYSCMAINTEGR 136
S NP + WF + + + + G I L + +L ++ G+Y C+A N+ G
Sbjct: 131 AASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
Query: 137 GASQPIILAVK 147
S P L V+
Sbjct: 190 RYSSPANLYVR 200
Score = 64.1 bits (156), Expect = 3e-13
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 9/120 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A N+ S + V V F +I G +V C +P +
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVQNVAP---RFSILPMSHEIMPGGNVNITCVAVGSPMPY 236
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ W +++ + + VL+ + + Y+C+A+++ G + VK
Sbjct: 237 -VKWMQGAEDLTPE--DDMPVG--RNVLELTDVKDSANYTCVAMSSLGV-IEAVAQITVK 290
Score = 56.0 bits (135), Expect = 3e-10
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 49 VHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL 108
PR + G F CQ + +P+ R+ W K+++ I
Sbjct: 3 GEEPPRFIKE----PKDQIGVSGGVASFVCQATGDPKP-RVTWNKKGKKVNSQRFETIEF 57
Query: 109 ---SNISLVLQKVSRQS-AGEYSCMAINTEGRGASQPIILAVK 147
+ L +Q + Y C+A N+ G + L V
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVL 99
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 69.0 bits (169), Expect = 4e-15
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
TC A N A+SS L V P F +P + +G DV+ EC++ P
Sbjct: 171 TCEAHNAAGSASSSTS----LKVKEPPV----FRKKPHPVETLKGADVHLECELQGTPPF 222
Query: 87 HRLLWFHNDKEIHHNVTGGIILSN--ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
++ W + +E+ I+ N S+ + V GEY C A N G + +
Sbjct: 223 -QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS-YTCVGSI 280
Query: 145 AVK 147
+K
Sbjct: 281 TLK 283
Score = 68.2 bits (167), Expect = 9e-15
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC A N + L V PR + S +K+ + +EC++ +P
Sbjct: 77 TCYASNVA---GKDSCSAQLGVQEPPRFIKKLEPS---RIVKQDEHTRYECKIGGSPEIK 130
Query: 88 RLLWFHNDKEIHHNVTGGI--ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145
+LW+ ++ EI + + + S L + +S + +G+Y+C A N G AS L
Sbjct: 131 -VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLK 188
Query: 146 VK 147
VK
Sbjct: 189 VK 190
Score = 64.4 bits (157), Expect = 2e-13
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH--HNVTGGIILSNISLVL 115
F D+ G+ F+C V+ + W +++EI N ++ + +L +
Sbjct: 7 FFDLKPVSVDLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 116 QKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
KV++ AG+Y+C A N G+ S L V+
Sbjct: 66 LKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQ 96
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 64.6 bits (158), Expect = 8e-15
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN---ISLV 114
+ + +G D +F +V P W+ N +I + LV
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELV 65
Query: 115 LQKVSRQSAGEYSCMAINTEG 135
++ V+ + + AIN G
Sbjct: 66 IRDVTGEDSASIMVKAINIAG 86
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 68.5 bits (167), Expect = 8e-15
Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 28 TCRAENTLIANSS------------MEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVY 75
T + ++ N S ++ ++ + HF L+ + +V
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE-VTGECNVL 240
Query: 76 FECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+C+V+ + ++W+ +++EI + +L++ + S++ AG Y + + G
Sbjct: 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 300
Query: 136 RGASQPIILAVK 147
+ S+ + L +
Sbjct: 301 KDKSR-LKLVDE 311
Score = 61.9 bits (150), Expect = 2e-12
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 11/124 (8%)
Query: 22 DDNSKLTCRAENTLIANSS-----MEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYF 76
DD +C +T SS E +L + + S +I E V F
Sbjct: 68 DDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRF 127
Query: 77 ECQV-SANPRAHRLLWFHNDKEIHHNVTGGIILSN----ISLVLQKVSRQSAGEYSCMAI 131
Q + A + + N+KEI + + I + ++K+ + G Y+
Sbjct: 128 WMQAEKLSGNAK-VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 186
Query: 132 NTEG 135
+ +
Sbjct: 187 DGKA 190
Score = 53.8 bits (129), Expect = 1e-09
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 59 FGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN--ISLVLQ 116
+ D + FEC P++ W + + + + +
Sbjct: 6 TKEVVVNVDDDGVISLNFECDKM-TPKSE-FSWSKDYVSTEDSPRLEVESKGNKTKMTFK 63
Query: 117 KVSRQSAGEYSCMAINTEGRGAS 139
+ G YSC +T+G +S
Sbjct: 64 DLGMDDLGIYSCDVTDTDGIASS 86
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 68.9 bits (168), Expect = 1e-14
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 12/127 (9%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A NT S T L V + I F + +G++V + A P+
Sbjct: 289 MCYANNTF---GSANVTTTLEVVDKGFINI-FPMINTTVFVNDGENVDLIVEYEAFPKPE 344
Query: 88 RLLWFHNDKEIH-------HNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
W + ++ + I L L ++ G Y+ + N++ A+
Sbjct: 345 HQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN-AAI 403
Query: 141 PIILAVK 147
+ V
Sbjct: 404 AFNVYVN 410
Score = 65.1 bits (158), Expect = 3e-13
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 10/138 (7%)
Query: 17 KPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYF 76
L C + S + + +IL V + V S ++EG++
Sbjct: 174 SVKRAYHRLCLHCSVDQE--GKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV 231
Query: 77 ECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI-------SLVLQKVSRQSAGEYSCM 129
C + + W + + +L + +G + C
Sbjct: 232 TCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCY 291
Query: 130 AINTEGRGASQPIILAVK 147
A NT G A+ L V
Sbjct: 292 ANNTFGS-ANVTTTLEVV 308
Score = 54.3 bits (130), Expect = 1e-09
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC ++ L ++ + V ++ + KE +D C ++ +P
Sbjct: 96 TCTNKHGL------SNSIYVFVRDPAKLFLVD----RSLYGKEDNDTLVRCPLT-DPEVT 144
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR-QSAGEYSCMAINTEGRGASQPIILAV 146
+ I ++++ V R C S+ IL V
Sbjct: 145 NYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV 204
Query: 147 K 147
+
Sbjct: 205 R 205
Score = 50.1 bits (119), Expect = 3e-08
Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 18/110 (16%)
Query: 27 LTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
L S + + P + ++ GD++ C +
Sbjct: 14 LLLLLRV---QTGSSQPSVSPGEPSPPSIHPGKSD----LIVRVGDEIRLLCTDPGFVK- 65
Query: 87 HRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
W + + + +K + G+Y+C +
Sbjct: 66 ----WTFEILDETNENKQN------EWITEKAEATNTGKYTCTNKHGLSN 105
Score = 50.1 bits (119), Expect = 4e-08
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 31/135 (22%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
T N+ A + + V+ P ++ + +C + P
Sbjct: 391 TFLVSNSDVNAAIAFN----VYVNTKPEILT----------YDRLVNGMLQCVAAGFPEP 436
Query: 87 HRLLWFHNDKEIHHNVTGGIILSN--------------ISLVLQKVSRQSAGEYSCMAIN 132
+ W+ + + + + + + G C A N
Sbjct: 437 T-IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYN 495
Query: 133 TEGRGASQPIILAVK 147
G+ S A K
Sbjct: 496 DVGK-TSAYFNFAFK 509
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 66.7 bits (163), Expect = 1e-14
Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 19/129 (14%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVI-HFGSSLNPTDIKEGDDVYFECQVSANPR 85
RA N + + L V ++ + + G+ V + S P
Sbjct: 78 QVRATNQGGSVSGTAS----LEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133
Query: 86 AHRLLWFHNDKEI----HHNVT---GGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138
+ W I H+ V L + V R+ AG Y A N G
Sbjct: 134 P-VITWQKGQDLIDNNGHYQVIVTRSFTSL----VFPNGVERKDAGFYVVCAKNRFGI-D 187
Query: 139 SQPIILAVK 147
+ + L V
Sbjct: 188 QKTVELDVA 196
Score = 64.4 bits (157), Expect = 9e-14
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----ISL 113
HF L +++ + C+V+ +P+ + W+ KEI + I L
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 114 VLQKVSRQSAGEYSCMAINTEGR 136
++ V+ A Y A N G
Sbjct: 65 IIASVTDDDATVYQVRATNQGGS 87
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 66.3 bits (162), Expect = 1e-14
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFV---PRVVIHFGSSLNPTDIKEGDDVYFECQVSAN 83
+ +A N A S+ E L V P V L +++G V + +V+
Sbjct: 79 SLKATNGSGQATSTAE----LLVKAETAPPNFVQR----LQSMTVRQGSQVRLQVRVTGI 130
Query: 84 PRAHRLLWFHNDKEIHHNVTGGIILSN--ISLVLQKVSRQSAGEYSCMAINTEGR 136
P + ++ + EI ++ I SL++ + + +G YS A N+ GR
Sbjct: 131 PTP-VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Score = 62.4 bits (152), Expect = 4e-13
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS----NISL 113
F L + EG FE +S P + WF + + I + G+ +S L
Sbjct: 7 TFTQPLQSVVVLEGSTATFEAHISGFPV-PEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 114 VLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ V++ ++G YS A N G+ A+ L VK
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQ-ATSTAELLVK 98
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 66.4 bits (162), Expect = 2e-14
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 8/144 (5%)
Query: 5 SDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLN 64
++ + + D C A N ++ L V + F + +
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNY--LGEAVSHDASLEVAILRDD---FRQNPS 119
Query: 65 PTDIKEGDDVYFECQV-SANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSA 123
+ G+ ECQ +P + W + + I + L++ + A
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEP-TISWKKDGSPLDDK-DERITIRGGKLMITYTRKSDA 177
Query: 124 GEYSCMAINTEGRGASQPIILAVK 147
G+Y C+ N G S+ L V
Sbjct: 178 GKYVCVGTNMVGERESEVAELTVL 201
Score = 54.8 bits (132), Expect = 4e-10
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 46 ILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG 105
+ F PR+V H + +G+ C+ P + W+ + + +
Sbjct: 3 LRQEDFPPRIVEHPSD----LIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDP 57
Query: 106 ----IILSNISLVLQKV-----SRQSAGEYSCMAINTEGRGASQPIILAV 146
++L + SL ++ SR G Y C+A N G S L V
Sbjct: 58 RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 67.6 bits (165), Expect = 2e-14
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C + E T + + + F ++ P + KEG+D C V ++
Sbjct: 78 KCVVTAE--DGTQSEATVNVKIF----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-P 130
Query: 88 RLLWFHNDKEIHHNVTGGI-ILSNISLVLQKVSRQSAGEYSCMAINTEGRG-ASQPIILA 145
++W H +++ +LSN L ++ + + G Y C + I +
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Query: 146 V 146
V
Sbjct: 191 V 191
Score = 63.7 bits (155), Expect = 4e-13
Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 9/124 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C + +D + V+ P + S+ G V C P
Sbjct: 171 RCEGRILARGEINFKDI-QVIVNVPP--TVQARQSIVNATANLGQSVTLVCDADGFPEPT 227
Query: 88 RLLWFHNDKEIHHNVTGGI----ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143
+ W + + I + + L ++ V + EY C+A N G I
Sbjct: 228 -MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE-QDASIH 285
Query: 144 LAVK 147
L V
Sbjct: 286 LKVF 289
Score = 60.7 bits (147), Expect = 6e-12
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 52 VPRVVIHFGSSLNPTD--IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS 109
V +V I P+ I G+ +F CQV+ + + + WF + E I +
Sbjct: 2 VLQVDIV------PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV 55
Query: 110 NI-----SLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+L + + AG Y C+ +G + + + +
Sbjct: 56 WNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 68.0 bits (166), Expect = 2e-14
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 9/109 (8%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A N + S+ T + V P + + G+D C+ + NP+
Sbjct: 291 FCLASNKM---GSIRHTISVRVKAAPYWLDE----PKNLILAPGEDGRLVCRANGNPKPT 343
Query: 88 RLLWFHNDKEIHHNVTGG-IILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+ W N + + ++ +++ + S Y C N G
Sbjct: 344 -VQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG 391
Score = 63.7 bits (155), Expect = 5e-13
Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 9/135 (6%)
Query: 19 SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRV------VIHFGSSLNPTDIKEGD 72
D + +C A ++ + L V V ++ + + + G
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGM 238
Query: 73 DVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132
D+ EC S P + W+ ++ + N +L + VS + +GEY C+A N
Sbjct: 239 DLLLECIASGVP-TPDIAWYKKGGDLPSDKAK-FENFNKALRITNVSEEDSGEYFCLASN 296
Query: 133 TEGRGASQPIILAVK 147
G I + VK
Sbjct: 297 KMGS-IRHTISVRVK 310
Score = 62.6 bits (152), Expect = 1e-12
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 10/113 (8%)
Query: 40 SMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH 99
M+ + + P + S + D++ EC+ NP W N + +
Sbjct: 4 PMDPSIQNELTQPPTITKQ---SAKDHIVDPRDNILIECEAKGNPAPS-FHWTRNSRFFN 59
Query: 100 HNVTGGIILSN------ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ + I + GEY C A N G S I L V
Sbjct: 60 IAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112
Score = 58.0 bits (140), Expect = 5e-11
Identities = 28/141 (19%), Positives = 40/141 (28%), Gaps = 10/141 (7%)
Query: 11 VSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKE 70
V ++ + C A N S L V P +L+P ++E
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIR--LQVSKSPLWPKE---NLDPVVVQE 130
Query: 71 GDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQ-SAGEYSC 128
G + +C P + W + E N L V Q +YSC
Sbjct: 131 GAPLTLQCNPPPGLPSPV-IFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189
Query: 129 MAINTEGRGASQ--PIILAVK 147
A Q P L V
Sbjct: 190 NARFHFTHTIQQKNPFTLKVL 210
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 68.0 bits (165), Expect = 2e-14
Identities = 24/133 (18%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 16 FKPSADDDNSKLTCRAENTLIANSSME-DTWILNVHFVPRVVIHFGSSLNPTDIKEGDDV 74
K + +D+ +C A + + T L V + PR+ E
Sbjct: 331 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPG--NWTWPENSQQ 388
Query: 75 YFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134
CQ NP L + V+R G Y C A +T+
Sbjct: 389 TPMCQAWGNPLPE-LKCLKDGTFPLP-----------IGESVTVTRDLEGTYLCRARSTQ 436
Query: 135 GRGASQPIILAVK 147
G ++ + + V
Sbjct: 437 GE-VTREVTVNVL 448
Score = 54.5 bits (130), Expect = 9e-10
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 9/122 (7%)
Query: 16 FKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVY 75
++ S ++S+ C + + L V++ P V + P+ G ++
Sbjct: 52 YELSNVQEDSQPMCYSNC---PDGQSTAKTFLTVYWTPERVEL---APLPSWQPVGKNLT 105
Query: 76 FECQVSANPRAHRL--LWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINT 133
CQV L + +KE+ + ++ + +SC
Sbjct: 106 LRCQVEGGAPRANLTVVLLRGEKELK-REPAVGEPAEVTTTVLVRRDHHGANFSCRTELD 164
Query: 134 EG 135
Sbjct: 165 LR 166
Score = 54.1 bits (129), Expect = 2e-09
Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFG 60
+ + + + + + D+ +LTC N S E + ++ P +
Sbjct: 235 TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVIL---GNQSQETLQTVTIYSFPAPNV--- 288
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR 120
L ++ EG +V +C+ + L L+L+
Sbjct: 289 -ILTKPEVSEGTEVTVKCEAHPRAKV-TLNGVPAQPL----------GPRAQLLLKATPE 336
Query: 121 QSAGEYSCMAINTEG 135
+ +SC A
Sbjct: 337 DNGRSFSCSATLEVA 351
Score = 46.8 bits (110), Expect = 5e-07
Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 14/144 (9%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANS-----SMEDTWILNVHFVPRV 55
+ VT + D + +CR E L + + L +P
Sbjct: 134 PAVGEPAEVTTT---VLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190
Query: 56 VIHFGSSLNPTDIKEGDDVYFECQVSANPRAH--RLLWFHNDKEIHHNVT-GGIILSNIS 112
++P ++ C + ++ D+ ++ VT G S +
Sbjct: 191 PPQ---LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA 247
Query: 113 LVLQKVSRQSAGEYSCMAINTEGR 136
V + +C I
Sbjct: 248 SVSVTAEDEGTQRLTCAVILGNQS 271
Score = 32.9 bits (74), Expect = 0.032
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 62 SLNPTDI--KEGDDVYFECQVSAN-PRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKV 118
S++P+ + G V C S + P + KE+ V +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNN-------RKVYELS 55
Query: 119 SRQSAGEYSCMAINTEGRGASQPII 143
+ Q + C + +G+ ++ +
Sbjct: 56 NVQEDSQPMCYSNCPDGQSTAKTFL 80
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 67.3 bits (164), Expect = 2e-14
Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 7/130 (5%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
D++ C+ S L V+ V + G+ C +
Sbjct: 154 LDSNTYVCKTMVN--GRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSAT 211
Query: 82 ANPRAHRLLWFHNDKEI----HHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRG 137
++ D ++ + + +L L V Q AG YSC+A N G
Sbjct: 212 NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT- 270
Query: 138 ASQPIILAVK 147
+ + V
Sbjct: 271 RTATMNFQVV 280
Score = 63.4 bits (154), Expect = 5e-13
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 6/120 (5%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C +A S+ T L V + + EG + C ++
Sbjct: 67 RCTELEDPMAGST---TIHLYVKDPAHS---WNLLAQEVTVVEGQEAVLPCLITDPALKD 120
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ T +++K + Y C + S I L V
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180
Score = 41.5 bits (97), Expect = 3e-05
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 13/95 (13%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNIS 112
P + ++ G+ V C + + W T +
Sbjct: 5 PVIEPSGPE----LVVEPGETVTLRCVSNGSVE-----WDGPISP---YWTLDPESPGST 52
Query: 113 LVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L + + ++ G Y C + G++ I L VK
Sbjct: 53 LTTRNATFKNTGTYRCTELEDPMAGSTT-IHLYVK 86
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 63.5 bits (155), Expect = 3e-14
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS---NISLV 114
F I EG + +VS P + W+ N + + + +I+S SL+
Sbjct: 7 RFIQVPENMSIDEGRFCRMDFKVSGLPAPD-VSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 115 LQKVSRQSAGEYSCMAINTEG 135
+ V AG Y+C+A N G
Sbjct: 66 FEVVRASDAGAYACVAKNRAG 86
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 65.3 bits (159), Expect = 3e-14
Identities = 20/121 (16%), Positives = 30/121 (24%), Gaps = 15/121 (12%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDI--KEGDDVYFECQVSANPR 85
C S + + +P + P D CQ P
Sbjct: 84 QCLVFLGHQTFVS--QPGYVGLEGLPYFLEE------PEDRTVAANTPFNLSCQAQGPPE 135
Query: 86 AHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145
LLW + + G L +SC A N +G S+ +
Sbjct: 136 PVDLLWLQDAVPLATAPGHG-----PQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATIT 190
Query: 146 V 146
V
Sbjct: 191 V 191
Score = 54.1 bits (130), Expect = 6e-10
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 65 PTDI--KEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI-----------ILSNI 111
P +I G CQ+ + W + + + + +
Sbjct: 9 PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVS 68
Query: 112 SLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L + + G+Y C+ SQP + ++
Sbjct: 69 QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE 104
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 66.5 bits (162), Expect = 4e-14
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 17/120 (14%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C+ S D L +H ++ ++ EG+ + C + +
Sbjct: 64 RCQRGL-----SGRSDPIQLEIHRGWLLL-----QVSSRVFTEGEPLALRCHAWKDKLVY 113
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+L++ N K +L + K + G Y C + S I + VK
Sbjct: 114 NVLYYRNGKAFKFFHWNS------NLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVK 166
Score = 59.2 bits (143), Expect = 1e-11
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 62 SLNPTD--IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVS 119
+L P + + + V C+V P + WF N S S + S
Sbjct: 5 TLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT--------STPSYRITSAS 56
Query: 120 RQSAGEYSCMAINTEGRGASQPIILAVK 147
+GEY C + S PI L +
Sbjct: 57 VNDSGEYRCQRGLSGR---SDPIQLEIH 81
Score = 53.8 bits (129), Expect = 1e-09
Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 22/153 (14%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFG 60
+SN+T+ N C + V + +
Sbjct: 125 KFFHWNSNLTILKT-----NISHNGTYHCSGMGKH---RYTSAGISVTVKELFPAPVLNA 176
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLW----FHNDKEIHHNVTGGIILSNISLVLQ 116
S + + EG+ V C+ + L + K + T +
Sbjct: 177 SV--TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS------EYQIL 228
Query: 117 KVSRQSAGEYSCMAINTEGRG--ASQPIILAVK 147
R+ +G Y C A +G S + L V
Sbjct: 229 TARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 66.8 bits (163), Expect = 6e-14
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
C A + + SM L++ + P+ + + EG+ + C V +NP A
Sbjct: 79 DCEAASRIGGHQKSMY----LDIEYAPKFISNQ----TIYYSWEGNPINISCDVKSNPPA 130
Query: 87 HRLLWFHNDKEIHHNVTGGIIL----SNISLVLQKVSRQSAGEYSCMAINTEGRGASQPI 142
+ W + + T + + L + S G Y+C A N G Q
Sbjct: 131 S-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT-RFQEY 188
Query: 143 ILAVK 147
ILA+
Sbjct: 189 ILALA 193
Score = 51.7 bits (124), Expect = 9e-09
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 11/91 (12%)
Query: 66 TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI---------SLVLQ 116
E V C P + W + I SL ++
Sbjct: 10 ETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIK 68
Query: 117 KVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
V +G Y C A + G G + + L ++
Sbjct: 69 DVKLSDSGRYDCEAASRIG-GHQKSMYLDIE 98
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 66.4 bits (162), Expect = 6e-14
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C AEN+ L + P V +N + + V++EC+ + P+
Sbjct: 274 ECVAENSR---GKNVAKGQLTFYAQPNWVQI----INDIHVAMEESVFWECKANGRPKPT 326
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
W N + I + +L + V+ AG Y C+A N G
Sbjct: 327 -YRWLKNGDPLLTR--DRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 64.5 bits (157), Expect = 3e-13
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNIS 112
P V + P D E V C+V NP+ H + W N ++ + + + S
Sbjct: 6 PVFVQEPSHVMFPLD-SEEKKVKLSCEVKGNPKPH-IRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 113 LVLQKVSRQS-AGEYSCMAINTEGRGASQPIILAV 146
L++ ++ AG Y C+A N+ G S+ L
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF 98
Score = 61.4 bits (149), Expect = 4e-12
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 7/122 (5%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A N+ S E L ++ + + ++ G + C +
Sbjct: 79 QCIATNSFGTIVSREAK--LQFAYLENFKTR---TRSTVSVRRGQGMVLLCGPPPHSGEL 133
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR--GASQPIILA 145
W N+ + + + +L + KV + G Y+C+ NT P L
Sbjct: 134 SYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLI 193
Query: 146 VK 147
++
Sbjct: 194 LR 195
Score = 60.6 bits (147), Expect = 7e-12
Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNV-------HFVPRVVIHFGSSLNPTDIKEGDDV 74
D TC NT+ + + L + + P++ + F ++ ++G V
Sbjct: 167 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP---AEKGTTV 223
Query: 75 YFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTE 134
EC NP +LW D + SN L + ++ AG Y C+A N+
Sbjct: 224 KLECFALGNP-VPTILWRRADGKPI-ARKARRHKSNGILEIPNFQQEDAGSYECVAENSR 281
Query: 135 GRGASQPIILAVK 147
G+ L
Sbjct: 282 GK-NVAKGQLTFY 293
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 63.7 bits (155), Expect = 7e-14
Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 21 DDDNSKLTCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQ 79
+S + N + ++ +E+ H P F ++ ++ EG F+C+
Sbjct: 9 ASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPY----FTKTILDMEVVEGSAARFDCK 64
Query: 80 VSANPRAHRLLWFHNDKEIHHNVTGGIILSN---ISLVLQKVSRQSAGEYSCMAINTEGR 136
V P ++WF +D + + I SL + +V +Y+C A+N+ G
Sbjct: 65 VEGYPDPE-VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 66.1 bits (161), Expect = 8e-14
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 9/136 (6%)
Query: 19 SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVV---IHFGSSLNPTDIKEGDDVY 75
+D CR ++ L + + T V P P ++ +
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTIS 231
Query: 76 FECQVSANPRAHRLLWFHNDKEIHHN----VTGGIILSNISLVLQKVSRQSAGEYSCMAI 131
C P A W+ + + + + +L+++ + +G+Y C+
Sbjct: 232 LLCPAQGFP-APSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 290
Query: 132 NTEGRGASQPIILAVK 147
N+ G S +L V
Sbjct: 291 NSVGG-ESVETVLTVT 305
Score = 61.5 bits (149), Expect = 3e-12
Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C N++ S +L V I + G F CQ + NP
Sbjct: 286 LCVVNNSVGGESV---ETVLTVTAPLSAKID----PPTQTVDFGRPAVFTCQYTGNPIKT 338
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+ W + K I H S L ++ V ++ G Y C N
Sbjct: 339 -VSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRE 377
Score = 56.9 bits (137), Expect = 1e-10
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG-IILSNI 111
P + N D EC+ S NP ++W +D +V G I S+
Sbjct: 4 PVFLKE---PTNRIDFSNSTGAEIECKASGNPMPE-IIWIRSDGTAVGDVPGLRQISSDG 59
Query: 112 SLVLQKVSRQS------AGEYSCMAINTEGRGASQPIILAV 146
LV + A Y+C+A N G S+ + +
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 100
Score = 48.0 bits (114), Expect = 2e-07
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 15/121 (12%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
C A N S +VH V ++ + +N + G+ +C + +
Sbjct: 81 ACLARNQFGSIISR-------DVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD 133
Query: 87 H--RLLWFHNDKEIHHNVTGG----IILSNISLVLQKVSRQ-SAGEYSCMAINTEGRGAS 139
+ W +++E + ++L + L +++V + Y C +
Sbjct: 134 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR 193
Query: 140 Q 140
Sbjct: 194 L 194
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 62.4 bits (152), Expect = 1e-13
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 51 FVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN 110
V +H L D++EG F C++S + WF + +H N I
Sbjct: 8 LVQGRRVHIIEDLEDVDVQEGSSATFRCRISPAN-YEPVHWFLDKTPLHANELNEIDAQP 66
Query: 111 ---ISLVLQKVSRQSAGEYSCMA 130
L L++++ + +G A
Sbjct: 67 GGYHVLTLRQLALKDSGTIYFEA 89
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 65.7 bits (160), Expect = 1e-13
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C AEN ++ + +H P + + T+ G D+ + C S PR
Sbjct: 273 ECEAENIKGRDTY---QGRIIIHAQPDWLDV----ITDTEADIGSDLRWSCVASGKPRPA 325
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+ W + + + I +S L K+ + +G Y C+A N G
Sbjct: 326 -VRWLRDGQPLASQ--NRIEVSGGELRFSKLVLEDSGMYQCVAENKHG 370
Score = 61.0 bits (148), Expect = 5e-12
Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNIS 112
P +L P + V C+ ANP A W N E+ L
Sbjct: 5 PVFEEQPAHTLFPEG-SAEEKVTLTCRARANPPAT-YRWKMNGTELKMGPDSRYRLVAGD 62
Query: 113 LVLQKVSRQS-AGEYSCMAINTEGRGASQPIILAV 146
LV+ + AG Y C+A N G S+ L
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97
Score = 59.5 bits (144), Expect = 2e-11
Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 17/134 (12%)
Query: 22 DDNSKLTCRAENTL--IANSSMEDTWILNV------HFVPRVVIHFGSSLNPTDIKEGDD 73
D +C A + + I S L++ + P + F + T G
Sbjct: 168 SDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPAD---TYALTGQM 224
Query: 74 VYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINT 133
V EC NP ++ W D + T + S L +Q V + G Y C A N
Sbjct: 225 VTLECFAFGNP-VPQIKWRKLD----GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENI 279
Query: 134 EGRGASQPIILAVK 147
+GR + + +
Sbjct: 280 KGR-DTYQGRIIIH 292
Score = 54.9 bits (132), Expect = 7e-10
Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 7/115 (6%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C A N S L F+ +P I EG V F C + A
Sbjct: 78 QCVATNARGTVVS--REASLRFGFLQEFSAE---ERDPVKITEGWGVMFTCSPPPHYPAL 132
Query: 88 RLLWFHNDKEIHHNVTGG--IILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
W N+ G + + +L + K G YSC A +
Sbjct: 133 SYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 62.2 bits (151), Expect = 1e-13
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 47 LNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI 106
L V+ P + SS G+ +C + + P R+ W + + +G
Sbjct: 9 LTVNGPPII-----SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRY 63
Query: 107 ILSNI--------SLVLQKVSRQ-SAGEYSCMAINTEGRGASQPIILAVK 147
+ I +L + + R Y+C A N+ G ++ I L +
Sbjct: 64 TVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQ 112
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 61.6 bits (150), Expect = 1e-13
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS--NISLVL 115
+L G+ + C S NP +++WF +++ + + GI+L N +L +
Sbjct: 12 TITGNLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVED--SGIVLKDGNRNLTI 68
Query: 116 QKVSRQSAGEYSCMAINTEG 135
++V ++ G Y+C A + G
Sbjct: 69 RRVRKEDEGLYTCQACSVLG 88
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 64.1 bits (156), Expect = 2e-13
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 26 KLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPR 85
L+ +A + A + RV G + I+EG + C V +P
Sbjct: 90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARV---LGGLPDVVTIQEGKALNLTCNVWGDPP 146
Query: 86 AHRLLWFHNDKEIHHNVTGGIILS---NISLVLQKVSRQSAGEYSCMAINTEG 135
+ W N+K + + + VS +G+Y + N G
Sbjct: 147 P-EVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 198
Score = 47.6 bits (113), Expect = 1e-07
Identities = 11/96 (11%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 54 RVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN--I 111
+ + L + + V+ ++ W HN I ++ ++ I
Sbjct: 2 SSIALSATDL--KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI 59
Query: 112 SLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L + + + G+Y + + + + L+ +
Sbjct: 60 WLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLSGQ 94
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 61.3 bits (149), Expect = 2e-13
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNIS 112
++V+ + G V C+V A P + W + + + +
Sbjct: 11 VQLVVE----PEGGAVAPGGTVTLTCEVPAQPSPQ-IHWMKDGVPLP-------LPPSPV 58
Query: 113 LVLQKVSRQSAGEYSCMAINTEGRG-ASQPIILAV 146
L+L ++ Q G YSC+A ++ S+ + +++
Sbjct: 59 LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 61.6 bits (150), Expect = 2e-13
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS---NISLV 114
HF + ++EG +C+VS P L W + K + + +++ SL+
Sbjct: 11 HFLQAPGDLTVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 115 LQKVSRQSAGEYSCMAINTEG 135
++ V+ + AG Y+C+A N G
Sbjct: 70 IEPVTSRDAGIYTCIATNRAG 90
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 60.8 bits (148), Expect = 2e-13
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 53 PRVVIHFGSSLNPTD--IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN 110
++ + PT + G + +C +P H WF N+ + H +
Sbjct: 4 LQICVE------PTSQKLMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHE-------TK 49
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
++ V + G Y C N S+ + + +
Sbjct: 50 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 65.1 bits (158), Expect = 2e-13
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 21 DDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
+ + + C A N L + + ++++ P+ +L +K G+ ++ C+
Sbjct: 200 ELFGTDIRCCARNELGRECT--RLFTIDLNQTPQT------TLPQLFLKVGEPLWIRCKA 251
Query: 81 SANPRAHRLLWFHNDKEIHHN--------VTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132
L W +K + T ++ + + V+R G Y+C +
Sbjct: 252 VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK 311
Query: 133 TEGRGAS 139
+ A
Sbjct: 312 HPSQSAL 318
Score = 63.2 bits (153), Expect = 9e-13
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC + + S + + I+ +S +I + ++ F + A P+
Sbjct: 306 TCSSSKH--PSQSAL----VTIVEKG--FINATNSSEDYEIDQYEEFCFSVRFKAYPQIR 357
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
W + K G + + S+ + GEY A N + ++ L ++
Sbjct: 358 -CTWTFSRKSFPCEQKG--LDNGYSISKFCNHKHQPGEYIFHAENDDA-QFTKMFTLNIR 413
Score = 59.3 bits (143), Expect = 2e-11
Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 18/142 (12%)
Query: 19 SADDDNSKLTCRAENTLIANSSMEDT----------WILNVHFVPRV--VIHFGSSLNPT 66
+ + D + C N +SS+ + L P+ ++ +++
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAV--- 58
Query: 67 DIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI-SLVLQKVSRQSAGE 125
++ + + V A LW ++ + + S+V+ K++ AGE
Sbjct: 59 EVDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGE 117
Query: 126 YSCMAINTEGRGASQPIILAVK 147
Y + + ++++
Sbjct: 118 YLLFIQSEAT-NYTILFTVSIR 138
Score = 53.2 bits (127), Expect = 3e-09
Identities = 13/121 (10%), Positives = 33/121 (27%), Gaps = 13/121 (10%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
++ + + +++ + P K + C + P
Sbjct: 119 LLFIQSEATNYTI---LFTVSIRNTLLYTLR-----RPYFRKMENQDALVCISESVPEP- 169
Query: 88 RLLWFHNDKEIH-HNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ W D + ++ VL + + C A N GR ++ + +
Sbjct: 170 IVEWVLCDSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDL 226
Query: 147 K 147
Sbjct: 227 N 227
Score = 45.8 bits (108), Expect = 1e-06
Identities = 20/134 (14%), Positives = 30/134 (22%), Gaps = 32/134 (23%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
AEN LN+ P+V+ E C P
Sbjct: 394 IFHAENDDAQFTKMFT----LNIRRKPQVL------------AEASASQASCFSDGYPLP 437
Query: 87 HRLLWFHND---KEIHHNVTGGIILSNIS----------LVLQKVSRQSAGEYSCMAINT 133
W +T G+ + L C A N+
Sbjct: 438 S-WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNS 496
Query: 134 EGRGASQPIILAVK 147
G + + I+L
Sbjct: 497 LGT-SCETILLNSP 509
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 63.3 bits (154), Expect = 3e-13
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 14/128 (10%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFEC-QVSANPRA 86
C A+N ++ L + + F T + +G+ EC P
Sbjct: 85 WCVAKNR--VGQAVSRHASLQIAVLRDD---FRVEPKDTRVAKGETALLECGPPKGIPEP 139
Query: 87 HRLLWFHNDKEIHHNVTGGI-------ILSNISLVLQKVSRQSAGEYSCMAINTEGRGAS 139
L+W + + I+ +L++ V G Y C+A N G S
Sbjct: 140 -TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRES 198
Query: 140 QPIILAVK 147
L V+
Sbjct: 199 SYAKLIVQ 206
Score = 56.4 bits (136), Expect = 9e-11
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHN--VTGGIILSN----I 111
+K+ + C+V P + WF + + + N + + +
Sbjct: 11 RIIEHPTDLVVKKNEPATLNCKVEGKPEPT-IEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 112 SLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+Q Q GEY C+A N G+ S+ L +
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 63.4 bits (154), Expect = 3e-13
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 17/120 (14%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQV-SANPRA 86
TC + E + L V P + P+ + G+ C +P +
Sbjct: 81 TCMVSEE-GGQNYGEVSIHLTVLVPP----SKPTISVPSSVTIGNRAVLTCSEHDGSPPS 135
Query: 87 HRLLWFHNDKEI----------HHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
WF + + N + I + L+ V+ +GEY C A N G
Sbjct: 136 E-YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 194
Score = 50.4 bits (120), Expect = 2e-08
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 20/107 (18%)
Query: 53 PRVVIHFGSSLNPTDI--KEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG----- 105
V +D+ E + + C S R+ W V
Sbjct: 2 GSVYTA------QSDVQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITA 54
Query: 106 -----IILSNISLVLQKVSRQSAGEYSCMAINTEGRG-ASQPIILAV 146
+ S+ + V+R+ GEY+CM G+ I L V
Sbjct: 55 PYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 62.6 bits (152), Expect = 4e-13
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 11/125 (8%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIH-----FGSSLNPTDIKEGDDVYFECQVSA 82
+C + I S + + + +P G +V EC
Sbjct: 82 SCFVSSPSITKSV--FSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALG 139
Query: 83 NPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPI 142
NP + W + + I S L + + + G Y C A N G+
Sbjct: 140 NPVPD-IRWRKVLEPMPST--AEISTSGAVLKIFNIQLEDEGIYECEAENIRGK-DKHQA 195
Query: 143 ILAVK 147
+ V+
Sbjct: 196 RIYVQ 200
Score = 54.1 bits (130), Expect = 6e-10
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 65 PTDIKEGDDVYFECQVSAN-PRAHRLLWFHNDKEIHHNVTGG--IILSNISLVLQKVSRQ 121
+KEG + C + P W N+ + + + +N +L + V
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEAS 76
Query: 122 SAGEYSCMAINTEGRGASQPIILAVK 147
G YSC + + + +
Sbjct: 77 DKGNYSCFVSSPSITKSVFSKFIPLI 102
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 60.5 bits (147), Expect = 5e-13
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN--ISLVL 115
F P + G + +C V P ++W +++ + L+L
Sbjct: 15 CFLRFPRPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQLAASERLSFPADGAEHGLLL 73
Query: 116 QKVSRQSAGEYSCMAINTEG 135
AG Y C A N G
Sbjct: 74 TAALPTDAGVYVCRARNAAG 93
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 60.5 bits (147), Expect = 5e-13
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQK 117
+ C + +P +LW + + + L N L ++
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVATGSPV-PTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 118 VSRQSAGEYSCMAINTEGRGASQPIILAVK 147
G Y+C+A G A+ + V+
Sbjct: 69 AKLGDTGRYTCIASTPSGE-ATWSAYIEVQ 97
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 62.3 bits (151), Expect = 6e-13
Identities = 29/130 (22%), Positives = 39/130 (30%), Gaps = 17/130 (13%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS-ANPRA 86
TC NS E L V P P+ G+ C +P +
Sbjct: 84 TCMVSEE-GGNSYGEVKVKLIVLVPPSKPTV----NIPSSATIGNRAVLTCSEQDGSPPS 138
Query: 87 HRLLWFHNDKEIHHNVTGGIILSNIS---------LVLQKVSRQSAGEYSCMAINTEGRG 137
WF + + N SN S LV +S GEYSC A N G
Sbjct: 139 E-YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT- 196
Query: 138 ASQPIILAVK 147
+ ++
Sbjct: 197 PMTSNAVRME 206
Score = 56.5 bits (136), Expect = 9e-11
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 52 VPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNV--------- 102
+ V +H SS I E + V C S R+ W + + V
Sbjct: 2 MGSVTVH--SSEPEVRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITAS 58
Query: 103 -TGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRG-ASQPIILAV 146
+ + + V+R+ G Y+CM G + L V
Sbjct: 59 YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV 104
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 63.4 bits (154), Expect = 6e-13
Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 25/140 (17%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIH-----------------FGSSLNPTDIKE 70
+ + + T L+ G + I+E
Sbjct: 180 VMELFD---GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 236
Query: 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS---NISLVLQKVSRQSAGEYS 127
G + C V +P + W N+K + + + + VS +G+Y
Sbjct: 237 GKALNLTCNVWGDPPP-EVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 128 CMAINTEGRGASQPIILAVK 147
+ N G + ++V
Sbjct: 296 LVVKNKYGS-ETSDFTVSVF 314
Score = 59.9 bits (145), Expect = 1e-11
Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 47 LNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI 106
++ P HF L+ + +V +C+V+ + ++W+ +++EI +
Sbjct: 2 IDPFTGP----HFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF 56
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+L++ + S++ AG Y + + G+ + L +
Sbjct: 57 KDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDE 96
Score = 49.1 bits (117), Expect = 6e-08
Identities = 14/131 (10%), Positives = 33/131 (25%), Gaps = 19/131 (14%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
++ + S L + D+ +
Sbjct: 77 EVILKDDRGKDKS---RLKLVDEAFK----ELMMEVCKKIALSATDLKIQSTAEGIQLYS 129
Query: 88 RLL---------WFHNDKEIHH--NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
+ W HN I + V G+ I L + + + G+Y + +
Sbjct: 130 FVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG 189
Query: 137 GASQPIILAVK 147
+ + L+ +
Sbjct: 190 -HQKTVDLSGQ 199
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 61.8 bits (150), Expect = 7e-13
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 52 VPRVVIHFGSSLNPTDI--KEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS 109
+P + + + + G+++ F C+ S +P + WF N K I N + S
Sbjct: 2 MPAISM----PQKSFNATAERGEEMTFSCRASGSP-EPAISWFRNGKLIEENEKYILKGS 56
Query: 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
N L ++ + G Y C A N G + L V
Sbjct: 57 NTELTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVF 93
Score = 56.0 bits (135), Expect = 1e-10
Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 19/129 (14%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
CRA N E L V P ++ L E V C P
Sbjct: 74 VCRATN---KAGEDEKQAFLQVFVQPHII-----QLKNETTYENGQVTLVCDAEGEPIPE 125
Query: 88 RLLWFHNDKEI-----HHNVTGGIILS----NISLVLQKVSRQSAGEYSCMAINTEGRGA 138
+ W ++ G I + + SL ++ V +G Y C A + G
Sbjct: 126 -ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG-H 183
Query: 139 SQPIILAVK 147
+ + L ++
Sbjct: 184 QKSMYLDIE 192
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 59.6 bits (145), Expect = 8e-13
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----ISL 113
+ + I EG + C + P + W ++IH G + N +L
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 114 VLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
++ V +Q G Y+ N G S + + ++
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGS-DSATVNIHIR 98
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 59.6 bits (145), Expect = 9e-13
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----ISL 113
+ L T + F + + PR +W + K I G LS L
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAVKATGEPRP-TAIWTKDGKAITQG--GKYKLSEDKGGFFL 64
Query: 114 VLQKVSRQSAGEYSCMAINTEG 135
+ K +G Y+C N+ G
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAG 86
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 59.7 bits (145), Expect = 1e-12
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI--SLVL 115
+ + EG+ F C P + W + + + + + + +
Sbjct: 16 RILTKPRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLSTSARHQVTTTKYKSTFEI 74
Query: 116 QKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
V G YS + N+EG+ L ++
Sbjct: 75 SSVQASDEGNYSVVVENSEGK-QEAEFTLTIQ 105
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 62.4 bits (151), Expect = 2e-12
Identities = 18/144 (12%), Positives = 41/144 (28%), Gaps = 22/144 (15%)
Query: 19 SADDDNSKLTCRAENTLIANSSMEDT--------------WILNVHFVPRVVIHFGSSLN 64
+ + D + C N +SS+ + L V
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQ-SSGTVYE----AA 56
Query: 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHN-VTGGIILSNISLVLQKVSRQSA 123
++ + + V A LW ++ +S+V+ K++ A
Sbjct: 57 AVEVDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQA 115
Query: 124 GEYSCMAINTEGRGASQPIILAVK 147
GEY + + ++++
Sbjct: 116 GEYLLFIQSEATN-YTILFTVSIR 138
Score = 62.0 bits (150), Expect = 3e-12
Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
TC + + S + + I+ +S +I + ++ F + A P+
Sbjct: 306 TCSSSKH--PSQSAL----VTIVEKGF--INATNSSEDYEIDQYEEFCFSVRFKAYPQIR 357
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
W + K + + S+ + GEY A N + + ++ L ++
Sbjct: 358 -CTWTFSRKSFPCEQK--GLDNGYSISKFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIR 413
Score = 57.4 bits (138), Expect = 1e-10
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 16/124 (12%)
Query: 21 DDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
+ + + C A N L + + + +L +K G+ ++ C+
Sbjct: 200 ELFGTDIRCCARNELGRECTR----LFTIDLNQTPQT----TLPQLFLKVGEPLWIRCKA 251
Query: 81 SANPRAHRLLWFHNDKEIHHN--------VTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132
L W +K + T ++ + + V+R G Y+C +
Sbjct: 252 VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK 311
Query: 133 TEGR 136
+
Sbjct: 312 HPSQ 315
Score = 52.8 bits (126), Expect = 4e-09
Identities = 13/121 (10%), Positives = 34/121 (28%), Gaps = 13/121 (10%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
++ + + +++ + P K + C + P
Sbjct: 119 LLFIQSEATNYTI---LFTVSIRNTLLYTLRR-----PYFRKMENQDALVCISESVPEP- 169
Query: 88 RLLWFHNDKEIHH-NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ W D + ++ VL ++ + C A N GR ++ + +
Sbjct: 170 IVEWVLCDSQGESCKEESPAVVKKEEKVLHELF---GTDIRCCARNELGRECTRLFTIDL 226
Query: 147 K 147
Sbjct: 227 N 227
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 58.6 bits (142), Expect = 2e-12
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGII---LS 109
P + + V F C NP + W N KE G
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 110 NISLVLQKVSRQSAGEYSCMAINTEGR 136
+ SL+++ V G Y+C+ N G
Sbjct: 64 HWSLIMESVVPSDKGNYTCVVENEYGS 90
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 61.2 bits (148), Expect = 2e-12
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 7/119 (5%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
T + + + V + V + T +KE D V C +
Sbjct: 87 TLDMTDENYRRTQATVRFH-----VHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANI 141
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ W N + + + +N L + + R+ AGEY C N S I L +
Sbjct: 142 Q--WLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 44.3 bits (104), Expect = 2e-06
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 19/100 (19%)
Query: 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG------------------I 106
P + E ++V W+ + I
Sbjct: 8 PPQVAEDNNVLLLVHNLPLALG-AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREI 66
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
I SN SL+ Q ++ + G Y+ + R + V
Sbjct: 67 IYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 58.1 bits (141), Expect = 3e-12
Identities = 16/93 (17%), Positives = 22/93 (23%), Gaps = 8/93 (8%)
Query: 59 FGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEI----HHNVTGGIILSNISLV 114
++ IK G E P W D V S S+
Sbjct: 5 ILTASRKIKIKAGFTHNLEVDFIGAP-DPTATWTVGDSGAALAPELLVD--AKSSTTSIF 61
Query: 115 LQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
R +G Y N G + V+
Sbjct: 62 FPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 58.1 bits (141), Expect = 3e-12
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----IS 112
I L T G+ V EC+VS A+ + WF N +EI +
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVS-EDDAN-VKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 113 LVLQKVSRQSAGEYSCMAINTEG 135
L+++ ++ A EYS M +
Sbjct: 66 LIIEGATKADAAEYSVMTTGGQS 88
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 60.9 bits (148), Expect = 4e-12
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS----NISL 113
HF L +++ + C+V+ +P+ + W+ KEI + I L
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 114 VLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
++ V+ A Y A N G S L V+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGS-VSGTASLEVE 97
Score = 57.8 bits (140), Expect = 5e-11
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 11/124 (8%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVI-HFGSSLNPTDIKEGDDVYFECQVSANPR 85
RA N + + L V ++ + + G+ V + S P
Sbjct: 78 QVRATNQGGSVSGTAS----LEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133
Query: 86 AHRLLWFHNDKEIHHNVTGGIILSN---ISLVLQKVSRQSAGEYSCMAINTEGRGASQPI 142
+ W I +N +I++ + V R+ AG Y A N G + +
Sbjct: 134 P-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTV 191
Query: 143 ILAV 146
L V
Sbjct: 192 ELDV 195
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 59.7 bits (144), Expect = 4e-12
Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 20/152 (13%)
Query: 5 SDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLN 64
+ + FK +DD + +C + ++ + +H PRV +
Sbjct: 42 KEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTAN------IQLHGPPRVKAV----KS 91
Query: 65 PTDIKEGDDVYFECQVSANPRAHRLLWFH----NDKEIHHNVTGGIILSN----ISLVLQ 116
I EG+ C+ + P W+ DK + + +S+ L ++
Sbjct: 92 SEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIE 151
Query: 117 KVSRQS-AGEYSCMAINTEGRGASQPIILAVK 147
++ ++ G+Y C +++G I L V+
Sbjct: 152 NLNMEADPGQYRCNGTSSKGS-DQAIITLRVR 182
Score = 49.6 bits (118), Expect = 2e-08
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 6/67 (8%)
Query: 70 EGDDVYFECQVSANPRAH-RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSC 128
G + C ++ + W + + + S GEYSC
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDSDDQWGEYSC 66
Query: 129 MAINTEG 135
+ +
Sbjct: 67 VFLPEPM 73
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 60.3 bits (146), Expect = 4e-12
Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 18/123 (14%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVV-IHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
TC EN S+ T+ L+V R I G DV F C+V ++ +
Sbjct: 92 TCVVENEY---GSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP 148
Query: 87 HRLLWFHNDKEIHHNVTGG-------------IILSNISLVLQKVSRQSAGEYSCMAINT 133
H + W + ++ + L L V+ AGEY C N
Sbjct: 149 H-IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY 207
Query: 134 EGR 136
G+
Sbjct: 208 IGQ 210
Score = 58.0 bits (140), Expect = 3e-11
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 12/108 (11%)
Query: 31 AENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLL 90
AE+ + NS N P + + V F C NP +
Sbjct: 2 AEDFVSENS--------NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPM-PTMR 52
Query: 91 WFHNDKEIHHNVTGGII---LSNISLVLQKVSRQSAGEYSCMAINTEG 135
W N KE G + SL+++ V G Y+C+ N G
Sbjct: 53 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 100
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 59.5 bits (144), Expect = 5e-12
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 18/128 (14%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C ++ + V P + H S + EG D C+ P
Sbjct: 72 HCVYHFVSAPKANAT----IEVKAAPDITGHKRS----ENKNEGQDAMMYCKSVGYPHPE 123
Query: 88 RLLWFHNDKEIH---HNVTGGIILSN----ISLVLQKVSRQS-AGEYSCMAINTEGRGAS 139
+W + + N +G + N L + + GEY C A N+ G AS
Sbjct: 124 -WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-AS 181
Query: 140 QPIILAVK 147
+L V+
Sbjct: 182 VSTVLRVR 189
Score = 57.2 bits (138), Expect = 4e-11
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPR-AHRLLWFHNDKEIHHNVTGGIILSNISLVLQ 116
+S V +C ++++ W N E+ SN+ +
Sbjct: 5 RIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT---ATRKNASNMEYRIN 61
Query: 117 KVSRQSAGEYSCMAINTEGRGAS 139
K + +GEY C+ A+
Sbjct: 62 KPRAEDSGEYHCVYHFVSAPKAN 84
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 59.7 bits (144), Expect = 7e-12
Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 10/126 (7%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
D C+ + A ++L V P + G+D +C+
Sbjct: 94 SDIGTYQCKVKK---APGVANKKFLLTVLVKP----SGTRCFVDGSEEIGNDFKLKCEPK 146
Query: 82 A-NPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
+ W +++ + ++ S + +G YSC N G
Sbjct: 147 EGSLPLQ-FEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVG-SDQC 204
Query: 141 PIILAV 146
+ L V
Sbjct: 205 MLRLDV 210
Score = 37.4 bits (86), Expect = 7e-04
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 30/112 (26%)
Query: 64 NPTDIKEGDDVYFECQVSANPRAHRLL---WFHNDKEIHHN------------------- 101
+ +G+ Y C+ + +P L W + +
Sbjct: 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67
Query: 102 -------VTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ + + S+ + + G Y C G A++ +L V
Sbjct: 68 LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTV 118
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 57.5 bits (139), Expect = 7e-12
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 47 LNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEI------HH 100
L V++ PRVV + + + + E V NP L W HN + + H
Sbjct: 3 LTVYYPPRVV-------SLEEPELRLEHCIEFVVRGNPPP-TLHWLHNGQPLRESKIIHV 54
Query: 101 NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
+S L+ K + + G Y+ +A N G
Sbjct: 55 EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT 90
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 56.9 bits (138), Expect = 1e-11
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHN-----VTGGIILSNI 111
L + G+DV C++S W + K I + V G +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTPVH--WLKDRKAIRKSQKYDVVCEG---TMA 63
Query: 112 SLVLQKVSRQSAGEYSCMAINTEG 135
LV++ S + AGEY+C ++
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKS 87
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 59.2 bits (143), Expect = 1e-11
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 28 TCRAENTLIANSSMEDTWILNVH-FVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
TC EN S+ T+ L+V P I G DV F C+V ++ +
Sbjct: 88 TCVVENKF---GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP 144
Query: 87 HRLLWFHNDK--------------EIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132
H + W + + + + + +++ L L VS + GEY C A N
Sbjct: 145 H-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATN 203
Query: 133 TEG 135
G
Sbjct: 204 FIG 206
Score = 54.9 bits (132), Expect = 4e-10
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI---HHNVTGGIILSNISLVLQKVSRQSAG 124
+ + V F C + NP + W N +E H + SLV++ V G
Sbjct: 27 VPAANTVRFRCPAAGNPT-PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 85
Query: 125 EYSCMAINTEG 135
Y+C+ N G
Sbjct: 86 NYTCVVENKFG 96
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 56.7 bits (137), Expect = 1e-11
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 46 ILNVHFVPRVVIHFGSSLNPTDI--KEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVT 103
+ F PR+V H P+D+ +G+ C+ P + W+ + + +
Sbjct: 3 LRQEDFPPRIVEH------PSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKD 55
Query: 104 GG----IILSNISLVLQKV-----SRQSAGEYSCMAINTEGRGASQPIILAVK 147
++L + SL ++ SR G Y C+A N G S L V
Sbjct: 56 DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 59.6 bits (144), Expect = 1e-11
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 47 LNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI 106
P + + V F C + NP + W N +E G
Sbjct: 114 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPT-PSISWLKNGREFRGEHRIGG 172
Query: 107 I---LSNISLVLQKVSRQSAGEYSCMAINTEG 135
I SLV++ V G Y+C+ N G
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFG 204
Score = 58.5 bits (141), Expect = 3e-11
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 20/124 (16%)
Query: 28 TCRAENTLIANSSMEDTWILNVH-FVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA 86
TC EN S+ T+ L+V P I G DV F C+V ++ +
Sbjct: 196 TCVVENKF---GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP 252
Query: 87 HRLLWFHNDKEIHHNVTGG---------------IILSNISLVLQKVSRQSAGEYSCMAI 131
H + W + + V L L V+ + AGEY+C+A
Sbjct: 253 H-IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
Query: 132 NTEG 135
N+ G
Sbjct: 312 NSIG 315
Score = 52.3 bits (125), Expect = 5e-09
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 65 PTDIKEGDDVYFECQV-SANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSA 123
GD V C P +W + + + +++ L + S + +
Sbjct: 17 QLVFGSGDAVELSCPPPGGGPMGP-TVWVKDGTGLVPS--ERVLVGPQRLQVLNASHEDS 73
Query: 124 GEYSCMAINTEGRGASQPIILAVK 147
G YSC T+ + +
Sbjct: 74 GAYSCRQRLTQRVLCHFSVRVTDA 97
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 56.2 bits (136), Expect = 1e-11
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 65 PTD--IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQS 122
P + + +C+ + +P + W I +L ++ +
Sbjct: 15 PANQTLAVDGTALLKCKATGDPL-PVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISD 73
Query: 123 AGEYSCMAINTEGRGASQPIILAVK 147
G Y+C+A ++ G S +L V
Sbjct: 74 TGTYTCVATSSSGE-TSWSAVLDVT 97
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 56.3 bits (136), Expect = 1e-11
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 49 VHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHN------- 101
VHF P + V NP+ L WF+N ++ +
Sbjct: 1 VHFAPTIT-------FLESPTSDHHWCIPFTVKGNPKPA-LQWFYNGAILNESKYICTKI 52
Query: 102 VTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ L L + + G+Y+ +A N G+ + I
Sbjct: 53 HVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHF 96
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 59.5 bits (143), Expect = 1e-11
Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 14/140 (10%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANS-----SMEDTWILNVHFVPRV 55
+ VT + + D + +CR E L + + L +P
Sbjct: 134 PAVGEPAEVTTTVLV---RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190
Query: 56 VIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLL--WFHNDKEIHHNVT-GGIILSNIS 112
S P ++ C + D+ ++ VT G S +
Sbjct: 191 PPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA 247
Query: 113 LVLQKVSRQSAGEYSCMAIN 132
V + +C I
Sbjct: 248 SVSVTAEDEGTQRLTCAVIL 267
Score = 46.4 bits (109), Expect = 7e-07
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 9/122 (7%)
Query: 16 FKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVY 75
++ S ++S+ C + + L V++ P V + P+ G ++
Sbjct: 52 YELSNVQEDSQPMCYSNC---PDGQSTAKTFLTVYWTPERVE---LAPLPSWQPVGKNLT 105
Query: 76 FECQVSANPRAHRL--LWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINT 133
CQV L + +KE+ + ++ + +SC
Sbjct: 106 LRCQVEGGAPRANLTVVLLRGEKELK-REPAVGEPAEVTTTVLVRRDHHGANFSCRTELD 164
Query: 134 EG 135
Sbjct: 165 LR 166
Score = 29.4 bits (65), Expect = 0.35
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 62 SLNPTD--IKEGDDVYFECQVS-ANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKV 118
S++P+ + G V C S P+ + KE+ V +
Sbjct: 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNN-------RKVYELS 55
Query: 119 SRQSAGEYSCMAINTEGR 136
+ Q + C + +G+
Sbjct: 56 NVQEDSQPMCYSNCPDGQ 73
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 58.6 bits (141), Expect = 3e-11
Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 12/134 (8%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+ C A+ S D + L V + + +K+GD C +
Sbjct: 156 YHRLCVRCAAQRDGTWLHS--DKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK 213
Query: 82 ANPRAHRLLWFHNDKEIHH---------NVTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132
+ +W + + H + +L + +G + C A N
Sbjct: 214 DVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANN 273
Query: 133 TEGRGASQPIILAV 146
T G A+ L V
Sbjct: 274 TFGS-ANVTTTLKV 286
Score = 54.7 bits (131), Expect = 6e-10
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 10/126 (7%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
TC N L ++ + V ++ + P KE D C ++
Sbjct: 67 TRTGTYTCSNSNGLTSSIY------VFVRDPAKLFLV----GLPLFGKEDSDALVRCPLT 116
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQP 141
+ L + K + ++T + C A S
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK 176
Query: 142 IILAVK 147
L V+
Sbjct: 177 FTLKVR 182
Score = 33.9 bits (77), Expect = 0.011
Identities = 10/68 (14%), Positives = 17/68 (25%), Gaps = 10/68 (14%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
++ GD + C R W + + +K G Y+
Sbjct: 24 VEAGDTLSLTCIDPDFVR-----WTFKTYFNEM-----VENKKNEWIQEKAEATRTGTYT 73
Query: 128 CMAINTEG 135
C N
Sbjct: 74 CSNSNGLT 81
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 55.5 bits (134), Expect = 3e-11
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI--SLV 114
+ + +K + F+C+VS W+ N E+ + I LV
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSDEKV--TGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 115 LQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ V + G+Y+ + +++ L +K
Sbjct: 67 IDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIK 99
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 55.4 bits (134), Expect = 4e-11
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEI----HHNVTGGIILSNISL 113
++ G+ V +V+ W K+I H V + L
Sbjct: 9 QIIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQESEHMKVENS--ENGSKL 65
Query: 114 VLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ ++ G Y+ + N G + L V
Sbjct: 66 TILAARQEHCGCYTLLVENKLGS-RQAQVNLTV 97
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 54.6 bits (132), Expect = 6e-11
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI----S 112
+ + L + G ++ +C++S N W N + + + +
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISENIPGK---WTKNGLPVQE--SDRLKVVQKGRIHK 62
Query: 113 LVLQKVSRQSAGEYSCMAINTEG 135
LV+ + G+Y
Sbjct: 63 LVIANALTEDEGDYVFAPDAYNV 85
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 54.3 bits (131), Expect = 8e-11
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI----S 112
+ L ++ EG+ FEC +S + +W K + + +
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS--SRFQATRQGRKYI 66
Query: 113 LVLQKVSRQSAGEYSCMAINTEGR 136
LV+++ + AGE +
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTSK 90
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 57.5 bits (139), Expect = 9e-11
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 38 NSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKE 97
+ E + F T++ EG F C+V A+ + W +D+E
Sbjct: 464 HRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV-VTWHKDDRE 522
Query: 98 IHHNVTGGIILS--NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ +V + + L + +V GEY+ A N+ G + + L V
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGT-KEEIVFLNV 572
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 53.9 bits (130), Expect = 1e-10
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI---ILSN--- 110
+ + L + GD V +VS A ++W N E+ + +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQ-VMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 111 ISLVLQKVSRQSAGEYSCMAINTE 134
L+ V ++ G Y + +
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQ 90
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 53.9 bits (130), Expect = 1e-10
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----IS 112
+ F +L ++ EG C +S+ + W + + + L +
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAA--PVKWCYGNNVLRPG--DKYSLRQEGAMLE 64
Query: 113 LVLQKVSRQSAGEYSCMA 130
LV++ + Q +G YSC
Sbjct: 65 LVVRNLRPQDSGRYSCSF 82
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 56.7 bits (136), Expect = 2e-10
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQS-AGEY 126
+ GDDV CQV W + E V L ++ L L V+
Sbjct: 170 VDVGDDVLLRCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNV 228
Query: 127 SCMAINTEG 135
+C A N G
Sbjct: 229 TCWAENDVG 237
Score = 53.6 bits (128), Expect = 2e-09
Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 19 SADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFEC 78
++D + +TC AEN + E + +NV F V +H E
Sbjct: 220 TSDLNRKNVTCWAENDV---GRAEVSVQVNVSFPASVQLHTAV--------EMHHWCIPF 268
Query: 79 QVSANPRAHRLLWFHNDKEIHHN---------VTGGIILSNISLVLQKVSRQSAGEYSCM 129
V P L W N ++ + + L L + + + G Y+ +
Sbjct: 269 SVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 327
Query: 130 AINTEGRGASQPIILAVK 147
A N G+ AS I+ A
Sbjct: 328 AANPFGQ-ASASIMAAFM 344
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 53.9 bits (130), Expect = 2e-10
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 37 ANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDK 96
+ SS + +L V +P I F L + EG C++S W+ +
Sbjct: 3 SGSSGRTSAMLTVRALP---IKFTEGLRNEEATEGATAVLRCELSKMAPVE---WWKGHE 56
Query: 97 EIHHNVTGGIILS----NISLVLQKVSRQSAGEYSCMA 130
+ L L ++ + + AGEY CM
Sbjct: 57 TLRDG--DRHSLRQDGARCELQIRGLVAEDAGEYLCMC 92
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 53.5 bits (129), Expect = 2e-10
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 56 VIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI--SL 113
+I L ++ G+ +FE ++S P H W + + + II L
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIELS-EPDVH-GQWKLKGQPLAASPDCEIIEDGKKHIL 62
Query: 114 VLQKVSRQSAGEYSCMAINTE 134
+L GE S A NT+
Sbjct: 63 ILHNCQLGMTGEVSFQAANTK 83
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 56.3 bits (135), Expect = 2e-10
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 9/113 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRA- 86
C N+ + + + + ++ + D C +
Sbjct: 78 YCVVRNS---SYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE 134
Query: 87 ----HRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+L W+ + K + + L++ V+ + G Y+C A T
Sbjct: 135 NNELPKLQWYKDCKPLLLD-NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186
Score = 49.0 bits (116), Expect = 9e-08
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKE--IHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ C ++ N + W+ +D + + I L + +G Y
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 78
Query: 128 CMAINTEG 135
C+ N+
Sbjct: 79 CVVRNSSY 86
Score = 48.2 bits (114), Expect = 1e-07
Identities = 16/127 (12%), Positives = 32/127 (25%), Gaps = 19/127 (14%)
Query: 28 TCRAENTLI-ANSSMEDTWILNVHFVPRVV--IHFGSSLNPTDIKEGDDVYFECQVSANP 84
TC A T + + + + + ++ G + C V+
Sbjct: 178 TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL 237
Query: 85 RAHRLLWFHNDKEI--------------HHNVTGGIILSNISLVLQKVSRQ-SAGEYSCM 129
W N I + L + ++ + ++C
Sbjct: 238 SDI-AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF 296
Query: 130 AINTEGR 136
A NT G
Sbjct: 297 AKNTHGI 303
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 53.1 bits (128), Expect = 3e-10
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----ISL 113
F L ++E F C+ +P A + W E+ + G S + L
Sbjct: 10 CFTEELTNLQVEEKGTAVFTCKTE-HPAA-TVTWRKGLLELRAS--GKHQPSQEGLTLRL 65
Query: 114 VLQKVSRQSAGEYSCMA 130
+ + + + Y+C
Sbjct: 66 TISALEKADSDTYTCDI 82
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 52.8 bits (127), Expect = 3e-10
Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 59 FGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKV 118
G + + GD + C++ + + W + ++ + ++ + +Q
Sbjct: 6 SGVEVESFLVHPGDLLQLRCRLRDDV--QSINWLRDGVQLAES--NRTRITGEEVEVQDS 61
Query: 119 SRQSAGEYSCMAINTEGRGASQPIILAVK 147
+G Y+C+ + G + + V
Sbjct: 62 VPADSGLYACVTSSPSGS-DTTYFSVNVS 89
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 56.0 bits (134), Expect = 3e-10
Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 14/139 (10%)
Query: 22 DDNSKLTCRAENTLI-ANSSMEDTWILNVHFVPRVVIHFGSSLNPT-DIKEGDDVYFECQ 79
+D+ + C + + + + + +P F L+P ++ G+ C
Sbjct: 192 EDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCT 251
Query: 80 VSANPRAHRLL---WFHNDKEI-------HHNVTGGIILSNISLVLQKVSRQSAGE-YSC 128
+ + W + I + +T ++ +L + V+ + G Y+C
Sbjct: 252 AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTC 311
Query: 129 MAINTEGRGASQPIILAVK 147
N + + ++
Sbjct: 312 RGHNYYFD-KTLTTTVVLE 329
Score = 55.2 bits (132), Expect = 5e-10
Identities = 14/120 (11%), Positives = 39/120 (32%), Gaps = 7/120 (5%)
Query: 21 DDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQV 80
+D + + C ++ ++ P + + + C +
Sbjct: 99 NDSHRRYLCTVTTK--NGDCVQGIVRSHIRKPPSCI----PETYELGTHDKYGIDLYCGI 152
Query: 81 SANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
+ + W+ N++E+ + T S +L++ + +G Y C + R +
Sbjct: 153 LYAKHYNNITWYKNNQELIIDGTK-YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKND 211
Score = 39.0 bits (90), Expect = 2e-04
Identities = 7/85 (8%), Positives = 19/85 (22%), Gaps = 6/85 (7%)
Query: 69 KEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI-----SLVLQKVSRQSA 123
G+ +C + ++ + N L + + +
Sbjct: 42 ALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDS 101
Query: 124 GE-YSCMAINTEGRGASQPIILAVK 147
Y C G + ++
Sbjct: 102 HRRYLCTVTTKNGDCVQGIVRSHIR 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 55.6 bits (134), Expect = 4e-10
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCM 129
GD + C + N++ + G + + N L +KV + G Y+C
Sbjct: 260 LGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCY 319
Query: 130 AINTEGRGASQPIILAV 146
A+ + + L V
Sbjct: 320 AMGETFN-ETLSVELKV 335
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 52.3 bits (126), Expect = 4e-10
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 56 VIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS----NI 111
V F ++ G FE + + W +I + L+
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETE-RAGVK-VRWQRGGSDISAS--NKYGLATEGTRH 63
Query: 112 SLVLQKVSRQSAGEYSCMAINTEG 135
+L +++V G Y+ +A +++
Sbjct: 64 TLTVREVGPADQGSYAVIAGSSKV 87
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 52.8 bits (127), Expect = 4e-10
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 57 IHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----IS 112
F L + EG +C++S + W + + G L
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELSKVA---PVEWKKGPETLRDG--GRYSLKQDGTRCE 63
Query: 113 LVLQKVSRQSAGEYSCMAINTEGRG 137
L + +S AGEYSCM
Sbjct: 64 LQIHDLSVADAGEYSCMCGQERTSA 88
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 55.5 bits (134), Expect = 5e-10
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG--IILSN 110
R+ + + EG V F C+ +P +LW K + + G + +
Sbjct: 385 ARIRDRKAQQVF---VDEGHTVQFVCRADGDPPPA-ILWLSPRKHLVSAKSNGRLTVFPD 440
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+L ++ Q G Y C+A N G S P L V+
Sbjct: 441 GTLEVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHVR 476
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 52.0 bits (125), Expect = 7e-10
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI- 111
V I + V C++S W+ + +++ + +++
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPAT--WYKDGQKVEES--ELLVVKMDG 62
Query: 112 ---SLVLQKVSRQSAGEYSCMAINTEG 135
L+L + Q +GE+ C
Sbjct: 63 RKHRLILPEAKVQDSGEFECRTEGVSA 89
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 54.0 bits (129), Expect = 7e-10
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 14/125 (11%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+ C A+ + S + + V R+ S + ++ G+ + C
Sbjct: 74 SYAGMVFCEAKIN---DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 130
Query: 82 ANPRAH-RLLWFHNDKEIHHNVTG----------GIILSNISLVLQKVSRQSAGEYSCMA 130
W + + H + +L + V+R G Y+C A
Sbjct: 131 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 190
Query: 131 INTEG 135
+
Sbjct: 191 SSGLM 195
Score = 42.9 bits (100), Expect = 7e-06
Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 4/95 (4%)
Query: 51 FVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH-RLLWFHNDKEIHHNVTGGIILS 109
F+ V G + V C S + L + +K + S
Sbjct: 6 FIASVSDQHGVVY--ITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDS 62
Query: 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
+ AG C A + S I+
Sbjct: 63 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIV 97
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 54.7 bits (131), Expect = 8e-10
Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 12/121 (9%)
Query: 23 DNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSA 82
++ C+ D+ V+ + I+ + T +++G+++ C V
Sbjct: 152 EDRSYICKTTI----GDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIG 207
Query: 83 NPRAHRLLWFHNDKEIHHNVTGGIILS-------NISLVLQKVSRQSAGEYSCMAINTEG 135
N + W + KE V L + + +G Y+C +
Sbjct: 208 NEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVN 266
Query: 136 R 136
Sbjct: 267 D 267
Score = 47.0 bits (111), Expect = 4e-07
Identities = 10/119 (8%), Positives = 28/119 (23%), Gaps = 9/119 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C ++ + + V + + + E ++ C+V+ +P+
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQL- 124
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ ++ V Y C + S +
Sbjct: 125 VVTLHEKKGDVALPVPYDHQRGF-------SGIFEDRSYICKTTIGDREVDSDAYYVYR 176
Score = 44.3 bits (104), Expect = 3e-06
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNIS-LVLQKVSRQSAGEY 126
+ C SA ++W +E + + S L L ++ GEY
Sbjct: 12 LNVSSTFVLTCSGSAP-----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 127 SCMAINTEGRGASQPIILAVK 147
C ++ G + L +
Sbjct: 67 FCTHNDSRGLETDERKRLYIF 87
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 52.0 bits (125), Expect = 9e-10
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN---ISLVLQKVSRQSAG 124
+ +G + +++ + A + W N +EI + + I S +L + + S
Sbjct: 28 VSKGHKIRLTVELA-DHDAE-VKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDA 85
Query: 125 EYSCMAINTEG 135
Y C+ +
Sbjct: 86 AYQCVVGGEKC 96
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 51.6 bits (124), Expect = 9e-10
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI- 111
V + + G C+V+ + + W+ + K++ + + + +
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEVA-QAQTE-VTWYKDGKKLSS--SSKVRVEAVG 63
Query: 112 ---SLVLQKVSRQSAGEYSCMAINTEG 135
LV+Q+ + AGEYSC A +
Sbjct: 64 CTRRLVVQQAGQAEAGEYSCEAGGQQL 90
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 52.3 bits (125), Expect = 1e-09
Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 17/105 (16%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH---------------HNV 102
F + G V C+ +P + W+ + + H
Sbjct: 23 GFVQAPLSQQRWVGGSVELHCEAVGSPVPE-IQWWFEGQGPNDICSQLWDGARLDRVHIH 81
Query: 103 TGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ ++ + + + G Y C A N R VK
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECRASNDPDR-NHLTRAPRVK 125
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 53.5 bits (128), Expect = 1e-09
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
CR + + + L+V + +H + + + C V+A P H
Sbjct: 83 LCRMKL---GETEVTKQEHLSVVKPLTLSVH----SERSQFPDFSVLTVTCTVNAFPHPH 135
Query: 88 RLLWFHNDKEIHHNVTGG---IILSNISL---VLQKVSRQSAGEYSCMAINTEG 135
+ W + + + SL V + + +C+ N +
Sbjct: 136 -VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 37.3 bits (86), Expect = 7e-04
Identities = 11/100 (11%), Positives = 25/100 (25%), Gaps = 14/100 (14%)
Query: 48 NVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGII 107
V P + + + + ++ + P +
Sbjct: 17 RVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA------------ 64
Query: 108 LSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ LV+ + G Y C E ++ L+V
Sbjct: 65 -NTFFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVV 102
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 53.5 bits (128), Expect = 2e-09
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 15/129 (11%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQ-----VSA 82
C N A+ + + L V + F S P + C
Sbjct: 97 VCTTRN---ASYCDKMSIELRVFENTDAFLPFIS--YPQILTLSTSGVLVCPDLSEFTRD 151
Query: 83 NPRAHRLLWFHNDKEIHH-NVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRG---A 138
+ W+ + + N + L++ V+ + AG Y C+
Sbjct: 152 KTDVK-IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNI 210
Query: 139 SQPIILAVK 147
++ I L +K
Sbjct: 211 TRSIELRIK 219
Score = 50.8 bits (121), Expect = 2e-08
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 57 IHFGSSLNPTDIKEGDDVYFEC-------QVSANPRAHRLLWFHNDKEIH--HNVTGGII 107
G EG+ V C S +PR L W ND +
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRI-NLTWHKNDSARTVPGEEETRMW 77
Query: 108 LSNISLVLQKVSRQSAGEYSCMAINTEG 135
+ +L L ++ +G Y C N
Sbjct: 78 AQDGALWLLPALQEDSGTYVCTTRNASY 105
Score = 43.1 bits (101), Expect = 7e-06
Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 20/129 (15%)
Query: 28 TCRAENTL-IANSSMEDTWILNVHFVPRVVI-HFGSSLNPTDIKEGDDVYFECQVSA--- 82
C ++ + L + I S L G + C+V
Sbjct: 196 RCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTG 255
Query: 83 NPRAHRLLWFHNDKEIHHNVTGGIILSN--------------ISLVLQKVSRQSAG-EYS 127
P L W ND I GG + + L+ V+R+ ++
Sbjct: 256 TPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFK 315
Query: 128 CMAINTEGR 136
C+ NT
Sbjct: 316 CVVHNTLSF 324
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 50.5 bits (121), Expect = 3e-09
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 52 VPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILS-- 109
I + S + V C++ P A + W + +E+ + ++L
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAE-VRWTKDGEEVVES--PALLLQKE 64
Query: 110 --NISLVLQKVSRQSAGEYSCMAINTEGR 136
LVL V + +GEY C +
Sbjct: 65 DTVRRLVLPAVQLEDSGEYLCEIDDESAS 93
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 52.9 bits (126), Expect = 4e-09
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 11/125 (8%)
Query: 16 FKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDV- 74
F+P+ +D TC N + + L V E
Sbjct: 83 FRPTLLNDTGNYTCMLRN---TTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQR 139
Query: 75 ----YFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMA 130
+ ++ + + W+ +I + +I ++L + G Y+C+
Sbjct: 140 ITCPNVDGYFPSSVKPT-ITWYMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVV 196
Query: 131 INTEG 135
E
Sbjct: 197 TYPEN 201
Score = 41.8 bits (97), Expect = 2e-05
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 22/141 (15%)
Query: 28 TCRAENTLI-ANSSMEDTWILNVHFVPRVVI--HFGSSLNPTDIK--EGDDVYFECQVSA 82
TC + T + V P+ + S + + G+++ C V
Sbjct: 193 TCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF 252
Query: 83 NPRAH---RLLWFHNDKEIHHNVTGGIILSNIS------------LVLQKVSRQ-SAGEY 126
+ + W + K+ I +IS L ++KV+ + Y
Sbjct: 253 SFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSY 312
Query: 127 SCMAINTEGRGASQPIILAVK 147
C A + +G ++ + K
Sbjct: 313 VCHARSAKGE-VAKAAKVKQK 332
Score = 34.5 bits (78), Expect = 0.007
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 17/85 (20%)
Query: 68 IKEGDDVYFECQVSANPRAHR----------LLWFHNDKE-------IHHNVTGGIILSN 110
+ E + +C + + L+W+ ++ I
Sbjct: 19 VFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK 78
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEG 135
L + G Y+CM NT
Sbjct: 79 DVLWFRPTLLNDTGNYTCMLRNTTY 103
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 52.1 bits (125), Expect = 4e-09
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI----HHNVTGGIILSNISLVLQKVSRQSA 123
EG+ V C+V A P A + WF + + + + N+ S L + S
Sbjct: 30 TWEGNQVNITCEVFAYPSAT-ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88
Query: 124 GEYSCMAINTEGRGASQPIILAV 146
G Y+C A+N G+ S IL
Sbjct: 89 GNYNCTAVNRIGQ-ESLEFILVQ 110
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 51.5 bits (123), Expect = 4e-09
Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 15/149 (10%)
Query: 3 SSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDT-----WILNVHFVPRVVI 57
+ S +T AD S +I N +ED+ + + ++++
Sbjct: 39 GNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV 98
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQK 117
++ + T + +G + + + G I +L + +
Sbjct: 99 FGLTANSDTHLLQGQSLTLTLESPPGSSP-SVQCRSPR--------GKNIQGGKTLSVSQ 149
Query: 118 VSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ Q +G ++C + + + I + V
Sbjct: 150 LELQDSGTWTCTVLQNQKK-VEFKIDIVV 177
Score = 42.3 bits (99), Expect = 1e-05
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 20/87 (22%)
Query: 69 KEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL-------------------S 109
K+GD V C S + W ++++ G +
Sbjct: 8 KKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 110 NISLVLQKVSRQSAGEYSCMAINTEGR 136
N L+++ + + + Y C + +
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEE 93
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 50.0 bits (119), Expect = 6e-09
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 68 IKEGDDVYFECQVSANPRAHR--LLWFHNDK-----------EIHHNVTGGIILSNISLV 114
+K G+D+ F +V A + + WF ++ + +
Sbjct: 19 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78
Query: 115 LQKVSRQSAGEYSCMAINTEGR 136
+ K AG Y C +
Sbjct: 79 IIKAKDNFAGNYRCEVTYKDKF 100
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 52.4 bits (126), Expect = 6e-09
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG---IILS 109
++ LN + EG +C+ W + + + + +L+
Sbjct: 352 APFIMDAPRDLNIS---EGRMAELKCRTPPMSSVK---WLLPNGTVLSHASRHPRISVLN 405
Query: 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ +L V G Y+CM N G ++ L V
Sbjct: 406 DGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNVS 442
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 49.4 bits (118), Expect = 6e-09
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 53 PRVVIHFGSSLNPTDIKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGIILSNI 111
V + S + ++ G DV F C + +P L+W + + N
Sbjct: 10 IMVTVEEQRSQS---VRPGADVTFICTAKSKSPAYT-LVWTRLHNGK---LPSRAMDFNG 62
Query: 112 SLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L ++ V AG Y C N L V+
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAM-DQGTATLHVQ 97
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 49.4 bits (118), Expect = 7e-09
Identities = 8/69 (11%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ GD + C++ + + W + ++ + ++ + ++ +G Y+
Sbjct: 21 VHPGDLLQLRCRLRDDV--QSINWLRDGVQLVES--NRTRITGEEVEVRDSIPADSGLYA 76
Query: 128 CMAINTEGR 136
C+ + G
Sbjct: 77 CVTSSPSGS 85
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 51.5 bits (122), Expect = 1e-08
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 26/139 (18%)
Query: 22 DDNSKLTCRAENTLIANSSMED--TWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQ 79
D + C+ I D + +L V S+ + EG+D+ C
Sbjct: 100 QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCP 159
Query: 80 VSANPRAHRLLWFHNDKEIHHNVTGGI-----------------------ILSNISLVLQ 116
+ A+ + W+ + TG +LV++
Sbjct: 160 CTDCANAN-VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIR 218
Query: 117 KVSRQSAGEYSCMAINTEG 135
AG C +G
Sbjct: 219 AAKITDAGRVWCELATGQG 237
Score = 31.0 bits (69), Expect = 0.10
Identities = 14/116 (12%), Positives = 21/116 (18%), Gaps = 33/116 (28%)
Query: 64 NPTDIKEGDDVYFECQVSANP--RAHRLLWFHNDKEIHHNVTGGII-------------- 107
++ G V C + + W
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 108 -----------------LSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
L+ +L L V Q G Y C R +V
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 48.9 bits (117), Expect = 1e-08
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 59 FGSSLNP-TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI----SL 113
F L+P + +G V F +++ +P+ + W+ N +EI + I + L
Sbjct: 10 FAKILDPAYQVDKGGRVRFVVELA-DPKLE-VKWYKNGQEIRPS--TKYIFEHKGCQRIL 65
Query: 114 VLQKVSRQSAGEYSCMA 130
+ EY A
Sbjct: 66 FINNCQMTDDSEYYVTA 82
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 51.3 bits (122), Expect = 1e-08
Identities = 12/119 (10%), Positives = 30/119 (25%), Gaps = 25/119 (21%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C E+ + + T + +G + +
Sbjct: 83 ICEVED----QKEEVQLLVFGLTANS-----------DTHLLQGQSLTLTLESPPGSSPS 127
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ G I +L + ++ Q +G ++C + + I + V
Sbjct: 128 -VQCRSPR--------GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
Score = 44.8 bits (105), Expect = 2e-06
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 20/98 (20%)
Query: 69 KEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL-------------------S 109
K+GD V C S + W ++++ G +
Sbjct: 7 KKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 110 NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
N L+++ + + + Y C + + L
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 103
Score = 39.4 bits (91), Expect = 1e-04
Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 17/135 (12%)
Query: 28 TCRAEN---------TLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFEC 78
TC ++ + + + I+ +V F + + +++++
Sbjct: 158 TCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA 217
Query: 79 QVSANPRAHRLLWFHNDKEIHHNVTGGIILS-----NISLVLQKVSRQSA--GEYSCMAI 131
+ +++ ++ N + VT L + L L + Q A G +
Sbjct: 218 ERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALE 277
Query: 132 NTEGRGASQPIILAV 146
G+ Q + L V
Sbjct: 278 AKTGK-LHQEVNLVV 291
Score = 29.4 bits (65), Expect = 0.36
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 10/71 (14%)
Query: 70 EGDDVYFECQVSANPRAH-RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSC 128
C+V L +KE + + V AG + C
Sbjct: 295 TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAV---------WVLNPEAGMWQC 345
Query: 129 MAINTEGRGAS 139
+ ++
Sbjct: 346 LLSDSGQVLLE 356
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 50.3 bits (119), Expect = 2e-08
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN-ISLVLQKVSRQS-AGEYS 127
G V C +LW HNDK I + I S+ L L++ S +G Y
Sbjct: 127 SGTTVILTCPQYPGSE---ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYV 183
Query: 128 CMAINTEGRGASQPIILAVK 147
C ++ A+ + L +
Sbjct: 184 CYPRGSKPEDANFYLYLRAR 203
Score = 42.6 bits (99), Expect = 8e-06
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 66 TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGE 125
D +E V C A + WF + K I + L ++ G
Sbjct: 13 YDYQEDGSVLLTCDAEAKN----ITWFKDGKMIGFLTEDKKKWN-----LGSNAKDPRGM 63
Query: 126 YSCMAINTEGR 136
Y C + +
Sbjct: 64 YQCKGSQNKSK 74
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 48.8 bits (116), Expect = 2e-08
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 76 FECQVSANPRAHRLLWFHNDKEIH---------HNVTGGIILSNISLVLQKVSRQSAGEY 126
V P L W N ++ + + L L + + + G Y
Sbjct: 20 IPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78
Query: 127 SCMAINTEGRGASQPIILAVK 147
+ +A N G+ AS I+ A
Sbjct: 79 TLLAANPFGQ-ASASIMAAFM 98
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 47.8 bits (113), Expect = 4e-08
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 19/107 (17%)
Query: 53 PRVVIHFGSSLNPTDIK--EGDDVYFECQVSANPRAH-RLLWFHNDKEI---------HH 100
P++ + P G DV F C +++ + W +++ + H
Sbjct: 11 PQITVQ------PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL 64
Query: 101 NVTGGIILSNIS-LVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
GG ++ + L L+ V S G Y C+ N G S L +
Sbjct: 65 RAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 47.4 bits (113), Expect = 6e-08
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI----SLVLQKVSRQSA 123
K G+ + PR +++W + T + + +++ +R +
Sbjct: 36 RKVGEQLNLVVPFQGKPRP-QVVWTKGGAPL---DTSRVHVRTSDFDTVFFVRQAARSDS 91
Query: 124 GEYSCMAINTEGRGASQPIILAV 146
GEY + + I + V
Sbjct: 92 GEYELSVQIENMK-DTATIRIRV 113
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 46.9 bits (111), Expect = 8e-08
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 13/90 (14%)
Query: 59 FGSSLNPTDIKEGDDVYFECQVSANPRAHR--LLWFHNDKEIHHNVTGGIILSNIS---- 112
F ++ G + F +V+ + WF + G + + S
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 113 -------LVLQKVSRQSAGEYSCMAINTEG 135
L + G Y C +
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDK 96
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 47.8 bits (114), Expect = 2e-07
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 66 TDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI---ILSNISLVLQKVSRQS 122
++ EG +C+ S + + + W + + + + +LS+ +L V+ Q
Sbjct: 351 LNVTEGMAAELKCRASTSLTS--VSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQD 408
Query: 123 AGEYSCMAINTEGRGASQPIILAV 146
G Y+CM N+ G + L V
Sbjct: 409 TGMYTCMVSNSVGN-TTASATLNV 431
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 45.0 bits (106), Expect = 4e-07
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 18/95 (18%)
Query: 49 VHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL 108
+ L + +G+D F +S + WF N +E+ N G +
Sbjct: 3 SGSSGTA--RLVAGLEDVQVYDGEDAVFSLDLSTIIQGT---WFLNGEELKSNEPEGQVE 57
Query: 109 SNI------------SLVLQKVSRQSAG-EYSCMA 130
L+L V Q +G
Sbjct: 58 PGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSC 92
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 46.2 bits (109), Expect = 4e-07
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 12/79 (15%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHN-----------VTGGIILSNISLVLQKV 118
G V EC L + N + + L + V
Sbjct: 16 VGSSVSLECDFDRRECT-ELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74
Query: 119 SRQSAGEYSCMAINTEGRG 137
+ +G+Y C+ I
Sbjct: 75 QVRDSGQYRCLVICGAAWD 93
Score = 38.5 bits (89), Expect = 2e-04
Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 15/125 (12%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
D+ + C + + V + ++ +V CQ
Sbjct: 77 RDSGQYRCLVICG---AAWDYKYLTVKVKASYMRI-----DTRILEVPGTGEVQLTCQAR 128
Query: 82 ANPRAHRLLWFHNDKEIHHNVT---GGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138
P A + W + + + G+ L + Q + +SCM N +
Sbjct: 129 GYPLAE-VSWQNVSVPANTSHIRTPEGLYQVTSVLR---LKPQPSRNFSCMFWNAHMKEL 184
Query: 139 SQPII 143
+ II
Sbjct: 185 TSAII 189
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 44.8 bits (105), Expect = 2e-06
Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 15/143 (10%)
Query: 7 SNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPT 66
+ T S + P + + C A + +E + ++ P+
Sbjct: 49 NEGTTSTLTMNPVSFGNEHSYLCTATC---ESRKLEKGIQVEIYSFPKDPEIH----LSG 101
Query: 67 DIKEGDDVYFECQVSANPRAHRL--LWFHNDKEIHHN------VTGGIILSNISLVLQKV 118
++ G + +C V+ RL D + + ++ + V
Sbjct: 102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV 161
Query: 119 SRQSAGEYSCMAINTEGRGASQP 141
C A S P
Sbjct: 162 IEDIGKVLVCRAKLHIDEMDSVP 184
Score = 41.7 bits (97), Expect = 2e-05
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR 120
+ + + GD V C + W + + +L + VS
Sbjct: 6 TPESRYLAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLNGKV-TNEGTTSTLTMNPVSF 63
Query: 121 QSAGEYSCMAINTEGR 136
+ Y C A +
Sbjct: 64 GNEHSYLCTATCESRK 79
Score = 39.4 bits (91), Expect = 1e-04
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSS----MEDTWILNVHFVPRV 55
V F P +D L CRA+ + S + L V+ P+
Sbjct: 143 DADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN 201
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 43.2 bits (101), Expect = 2e-06
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 11/87 (12%)
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAH-RLLWFHNDKEIHHNVT----------GGIILS 109
S + ++ G+ + C W + + H +
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 110 NISLVLQKVSRQSAGEYSCMAINTEGR 136
+L + V+R G Y+C A +
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMT 99
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 44.2 bits (103), Expect = 4e-06
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 10/127 (7%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPT---DIKEGDDVYFECQVSANP 84
C+A + ++ + V S+ + + F C+ S+
Sbjct: 201 LCQAGDDS-NSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGE 259
Query: 85 RAHRLLWFHNDKEIHHN-----VTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGAS 139
++ K + + S+V+ + ++ AG Y C A +
Sbjct: 260 N-CDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEG 318
Query: 140 QPIILAV 146
PI
Sbjct: 319 SPIQAWQ 325
Score = 41.9 bits (97), Expect = 2e-05
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 27/143 (18%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIK--EGDDVYFECQ 79
+D + C A + + V +PT +K G V C
Sbjct: 300 EDAGRYLCGAHS-----DGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCP 354
Query: 80 VSANPRAHRLLWFH--------------NDKEIHHNVTGGIIL------SNISLVLQKVS 119
+ W ++ + G + L +++L +++
Sbjct: 355 YNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLT 414
Query: 120 RQSAGEYSCMAINTEGRGASQPI 142
+ AG Y C+ + I
Sbjct: 415 SRDAGFYWCLTNGDTLWRTTVEI 437
Score = 41.9 bits (97), Expect = 3e-05
Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 20/132 (15%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
C + +++ I + P + + G+ + C ++
Sbjct: 422 WCLTNGDTLWRTTV---EIKIIEGEPNLKVP-----GNVTAVLGETLKVPCHFPCKFSSY 473
Query: 88 RLLWFHNDKEIHHNVTGGIILSN------------ISLVLQKVSRQSAGEYSCMAINTEG 135
W + + + +SL L V+R G Y C
Sbjct: 474 EKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHF 533
Query: 136 RGASQPIILAVK 147
G + + +AV+
Sbjct: 534 YGETAAVYVAVE 545
Score = 36.9 bits (84), Expect = 0.001
Identities = 17/132 (12%), Positives = 29/132 (21%), Gaps = 25/132 (18%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
DD+ + C +V + + G V C
Sbjct: 85 DDSGRYKCGLGIN-------SRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFK 137
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGIILSN------------------ISLVLQKVSRQSA 123
R + V N S+V+ ++ A
Sbjct: 138 TENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDA 197
Query: 124 GEYSCMAINTEG 135
G+Y C A +
Sbjct: 198 GQYLCQAGDDSN 209
Score = 29.6 bits (65), Expect = 0.36
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 20/86 (23%)
Query: 70 EGDDVYFECQVSAN--PRAHRLLWFH------------NDKEIHHNVTGGIILSN----- 110
EG+ V C R R W ++ + G L+N
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 111 -ISLVLQKVSRQSAGEYSCMAINTEG 135
+ + ++S+ +G Y C
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSR 99
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 43.1 bits (101), Expect = 6e-06
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 1 STSSSDSNVTV-SYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIH 58
VTV S PS+ D ++TC+ E+ T L V++ H
Sbjct: 164 VPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESF-EKPQLLTVSLTVYYPHHHHHH 221
Score = 30.4 bits (68), Expect = 0.16
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 70 EGDDVYFECQVSANP----RAHRLLWFHNDKE----IHHNVTG----------------G 105
GD V C + +L W + + + H G G
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 106 IILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
L + SL + + + G Y+C+ + S I L V
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 43.3 bits (101), Expect = 8e-06
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 64 NPTDIKEGDDVYFECQVSANPRAHRLL---WFHNDKEIHHNVTGGIILSNISLVLQKVSR 120
N GD V+ + L W +D+ N T +L + +
Sbjct: 10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE-NNTA-------TLTVADATS 61
Query: 121 QSAGEYSCMAINTEGRGASQPIILAV 146
++AG Y +T+ + + + +
Sbjct: 62 ENAGSYKVTVQDTDTMTSVESEVFLM 87
Score = 42.9 bits (100), Expect = 8e-06
Identities = 11/126 (8%), Positives = 31/126 (24%), Gaps = 20/126 (15%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSA----- 82
++T + ++ + + +V + + DV V
Sbjct: 68 KVTVQDT--DTMTSVESEVFLMEEAELIV--NITEPQHFYVSSQTDVELHATVKFSGGKT 123
Query: 83 --NPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
+ W +I + + +Q+ + G Y+ A+
Sbjct: 124 PADNYELHYSWSKG---------EDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAAS 174
Query: 141 PIILAV 146
+
Sbjct: 175 ASTKIM 180
Score = 31.3 bits (70), Expect = 0.089
Identities = 14/133 (10%), Positives = 38/133 (28%), Gaps = 24/133 (18%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
D N T + +++ + + V + + G+++ VS
Sbjct: 155 DKNGVYTVKVWGESEDSAA---SASTKIMLATMNVDQ--DVVESKTVALGNEISLNYVVS 209
Query: 82 ANPRAH---------RLLWFHNDK----------EIHHNVTGGIILSNISLVLQKVSRQS 122
+ + W+ + E+ + G I + L + +
Sbjct: 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDD 269
Query: 123 AGEYSCMAINTEG 135
++ C+A +
Sbjct: 270 TAKFWCVAKLYQQ 282
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 43.2 bits (101), Expect = 9e-06
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 4/105 (3%)
Query: 47 LNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH-RLLWFHNDKEIHHNVTGG 105
+ V P + ++ G F+C A RL D
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK 214
Query: 106 IILSN---ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+ S S + +++ AG+Y CM G G S L VK
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.1 bits (97), Expect = 2e-05
Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 2/107 (1%)
Query: 26 KLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPR 85
T S S K G +C +N
Sbjct: 503 PPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNL- 561
Query: 86 AHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAIN 132
R+ W + + ++ +L++ +S +G Y C++
Sbjct: 562 -ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 607
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 40.1 bits (93), Expect = 3e-05
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 71 GDDVYFECQVSANPRAHRLLWFHNDKEI-HHNVTGGIILSNISLVLQKVSR-QSAGEYSC 128
G V C W HNDK I I L L++ S + +G Y C
Sbjct: 21 GTTVILTCPQYPGSEIL---WQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
Query: 129 MAINTEGRGASQPIILAVK 147
++ A+ + L +
Sbjct: 78 YPRGSKPEDANFYLYLRAR 96
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 40.3 bits (94), Expect = 5e-05
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 10/76 (13%)
Query: 70 EGDDVYFECQ-VSANPRAHRLLWFHNDKEIHHNVTGGI---------ILSNISLVLQKVS 119
G + + W + IL+N L ++ ++
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 120 RQSAGEYSCMAINTEG 135
R +G Y+ +T G
Sbjct: 70 RDDSGTYNVTVYSTNG 85
Score = 39.9 bits (93), Expect = 7e-05
Identities = 13/116 (11%), Positives = 30/116 (25%), Gaps = 20/116 (17%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
+T N + L++ + V P E + C+V
Sbjct: 77 NVTVYST---NGTRILNKALDLRILEMV-------SKPMIYWECSNATLTCEVLEGTDVE 126
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143
L + + + S + + C A+N + + ++
Sbjct: 127 -LKLYQGKEHLR---------SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 39.9 bits (93), Expect = 6e-05
Identities = 13/106 (12%), Positives = 28/106 (26%), Gaps = 20/106 (18%)
Query: 28 TCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAH 87
+T I ++ RV P + C+V
Sbjct: 82 KVSIYDT---KGKNVLEKIFDLKIQERVS-------KPKISWTCINTTLTCEVMNGTDPE 131
Query: 88 RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINT 133
L + + K + + ++ K + + ++ C A N
Sbjct: 132 -LNLYQDGKHLKLSQR---------VITHKWTTSLSAKFKCTAGNK 167
Score = 39.5 bits (92), Expect = 9e-05
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 12/85 (14%)
Query: 71 GDDVYFECQVSA------------NPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKV 118
G D+ + ++ F +KE + N +L ++ +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 119 SRQSAGEYSCMAINTEGRGASQPII 143
Y +T+G+ + I
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIF 98
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 40.0 bits (93), Expect = 8e-05
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 26/101 (25%)
Query: 71 GDDVYFECQVSANPRAH----RLLWFHNDKEIHHNVTG--------------------GI 106
G ++ EC+ + + W DK I V G +
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
L N +L + V Q AG Y CM G + I + V
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKVN 114
Score = 36.9 bits (85), Expect = 9e-04
Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 16/120 (13%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
D C + + V+ + ++P + CQ
Sbjct: 90 QDAGVYRCMISY----GGADYKRITVKVNAPYNKINQRILVVDP----VTSEHELTCQAE 141
Query: 82 ANPRAHRLLWFHNDKEIHHNVTGGII------LSNISLVLQKVSRQSAGEYSCMAINTEG 135
P+A ++W +D ++ T L N++ L +++ + + C +
Sbjct: 142 GYPKAE-VIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTL-RINTTTNEIFYCTFRRLDP 199
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 39.9 bits (93), Expect = 9e-05
Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 12/138 (8%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFG 60
S S S + +D +S++ C + + + T L+ +
Sbjct: 169 PVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVT 228
Query: 61 SSLNPTDIKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNVTGGIILSN------IS- 112
++ + V CQV P+ +L W N + + +S
Sbjct: 229 QQ----PVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSW 284
Query: 113 LVLQKVSRQSAGEYSCMA 130
L++ + + + +C
Sbjct: 285 LLVNVSAHRDDVKLTCQV 302
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 38.7 bits (89), Expect = 2e-04
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMA 130
G V C + ++ W N +E+ ++L + S V +G Y C
Sbjct: 14 GTSVELTCPLDSDENLK---WEKNGQELPQKHDKHLVLQDFSEVED------SGYYVCYT 64
Query: 131 INTEGR 136
+
Sbjct: 65 PASNKN 70
Score = 37.9 bits (87), Expect = 3e-04
Identities = 8/75 (10%), Positives = 20/75 (26%), Gaps = 9/75 (12%)
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR 120
+ + + V C ++ + W + I + + + L ++
Sbjct: 112 NLVQVDGSRGDGSVLLTCGLTDKT----IKWLKDGSII-----SPLNATKNTWNLGNNAK 162
Query: 121 QSAGEYSCMAINTEG 135
G Y C
Sbjct: 163 DPRGTYQCQGAKETS 177
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 38.7 bits (89), Expect = 2e-04
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 39/153 (25%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
D TC ++ ++ V+ L ++ GD C +
Sbjct: 94 ADEGIYTCEIRLK-------NESMVMKKPVELWVLPEEPRDLR---VRVGDTTQMRCSIQ 143
Query: 82 ANP-----------------RAHRLLWFHNDKEIHH-----------NVTGGIILSNISL 113
+ +L + ++ ++TG I ++ S+
Sbjct: 144 STEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSI 203
Query: 114 VLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
LQ V G Y+C + + + I+L V
Sbjct: 204 KLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHV 235
Score = 34.8 bits (79), Expect = 0.006
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 24/97 (24%)
Query: 68 IKEGDDVYFECQVSA-----------------NPRAHRLLWFHNDKEIHH-------NVT 103
+ G+ V C V + + +L+++++ + ++
Sbjct: 17 VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLV 76
Query: 104 GGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
G ++ SL+LQ V + G Y+C +
Sbjct: 77 GDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMK 113
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 37.4 bits (86), Expect = 4e-04
Identities = 12/126 (9%), Positives = 34/126 (26%), Gaps = 34/126 (26%)
Query: 53 PRVVI-HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI 111
P++ + G + + G+ + + +S +P A ++W + + +
Sbjct: 14 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDP-APTVIWQKAITQGNKAPARPAPDAPE 72
Query: 112 -------------------------------SLVLQKVSRQSAGEYSCMAINTEGRGASQ 140
++ ++ G Y+ N G
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQV 131
Query: 141 PIILAV 146
+ + V
Sbjct: 132 NLTVKV 137
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 37.7 bits (87), Expect = 4e-04
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 18/92 (19%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI-----------------ILSNIS 112
G+ V + A + + + W N+ + V + S
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 113 LVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
L L + + G Y I+T+ L
Sbjct: 72 LQLSNLKMEDTGSYRAQ-ISTKTSAKLSSYTL 102
Score = 36.5 bits (84), Expect = 0.001
Identities = 10/111 (9%), Positives = 28/111 (25%), Gaps = 9/111 (8%)
Query: 36 IANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHND 95
I+ + + + ++ ++ + +++ C V W
Sbjct: 89 ISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALG 148
Query: 96 KEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ + S +Y+C+A N S +
Sbjct: 149 NTLSSQPNLTVSWDP--------RISSEQDYTCIAENAVSN-LSFSVSAQK 190
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 38.3 bits (88), Expect = 4e-04
Identities = 12/71 (16%), Positives = 17/71 (23%), Gaps = 1/71 (1%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
GD V C + W + L+L+ V +G YS
Sbjct: 18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-PSRWAGMGRRLLLRSVQLHDSGNYS 76
Query: 128 CMAINTEGRGA 138
C
Sbjct: 77 CYRAGRPAGTV 87
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 36.8 bits (85), Expect = 4e-04
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 69 KEGDDVYFECQVSA-NPRAHRLLWFHNDKEI--HHNVTGGIIL----------SNISLVL 115
++G + +C +S+ + ++ W D+ + + G I + L L
Sbjct: 16 EKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTL 75
Query: 116 QKVSRQSAGEYSCMAINTEGRGASQ 140
Q ++ GEY C+ +T G
Sbjct: 76 QSLTVNDTGEYFCI-YHTYPDGTYT 99
Score = 24.9 bits (54), Expect = 8.3
Identities = 12/67 (17%), Positives = 24/67 (35%)
Query: 18 PSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFE 77
S +++ ++ L+A + + W ++ F RV G L + D +
Sbjct: 28 SSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYF 87
Query: 78 CQVSANP 84
C P
Sbjct: 88 CIYHTYP 94
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 37.5 bits (86), Expect = 7e-04
Identities = 16/99 (16%), Positives = 24/99 (24%), Gaps = 22/99 (22%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKE----------------------IHHNVTGGII 107
G V +C + + L WF D+ +
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 108 LSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
S LVL + +Y C+ A L V
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Score = 36.7 bits (84), Expect = 0.001
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 10 TVSYVPFKPSADDDNSKLTCRAENTLIANSSM---EDTWILNVHF 51
S + + DD ++ C A +L T+ L +H+
Sbjct: 187 LTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY 231
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 37.2 bits (86), Expect = 9e-04
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 3/75 (4%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIH-HNVTGGIILSNISLVLQKVSRQSAGEY 126
I V +CQ +L+ N ++ V+ + AG Y
Sbjct: 20 IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRY 79
Query: 127 SCMAINTEGRGASQP 141
C R +
Sbjct: 80 QCQYRIGHYR--FRY 92
Score = 29.1 bits (65), Expect = 0.48
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 8/90 (8%)
Query: 39 SSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEI 98
S + + ++ P + G + G+++ C SA+ R +
Sbjct: 93 SDTLELVVTGLYGKPFLSADRGLV-----LMPGENISLTCS-SAHIPFDRFSLAKEGELS 146
Query: 99 HHNVTGGIILSNISLVLQKVSRQSAGEYSC 128
G + L V +G Y C
Sbjct: 147 LPQHQSG--EHPANFSLGPVDLNVSGIYRC 174
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 37.3 bits (85), Expect = 9e-04
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 6/106 (5%)
Query: 38 NSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKE 97
S ++ H + L + Y C + + W H +
Sbjct: 482 RSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMESRHA--TYSWRHKENV 539
Query: 98 IHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPII 143
G N L ++ ++ Q G Y C A EG +
Sbjct: 540 EQSC-EPGHQSPNCILFIENLTAQQYGHYFCEA--QEG-SYFREAQ 581
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 36.9 bits (85), Expect = 9e-04
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 16/95 (16%)
Query: 69 KEGDDVYFECQVS---ANPRAHRLLWFHNDKEIHH-------------NVTGGIILSNIS 112
+ + C + R+ W K + N T I +N+S
Sbjct: 7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS 66
Query: 113 LVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
+V+ + G Y C+ + E + + V
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVT 101
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 36.0 bits (83), Expect = 0.001
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 14/91 (15%)
Query: 70 EGDDVYFECQVSANPRAHRLLWFHNDKE--IHHNVTGGIIL------------SNISLVL 115
G +V S +L WF+ + + + + +L +
Sbjct: 18 SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 116 QKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
KV ++ Y + G I L V
Sbjct: 78 SKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 35.2 bits (81), Expect = 0.001
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 14/90 (15%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI----HHNVTGG--IILSN-----ISLVLQ 116
+ EG C+V L W + ++ I L +S+ +
Sbjct: 18 VVEGGTAILTCRVD-QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76
Query: 117 KVSRQSAGEYSCMAINTEGRGASQPIILAV 146
VS G+Y+C + T + L V
Sbjct: 77 DVSLSDEGQYTCS-LFTMP-VKTSKAYLTV 104
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 34.9 bits (80), Expect = 0.004
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 15/92 (16%)
Query: 60 GSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKE--IHHNVTGGIIL--------- 108
S+ + G +V RL W H + + + G +
Sbjct: 3 DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV 62
Query: 109 ----SNISLVLQKVSRQSAGEYSCMAINTEGR 136
+N +L + VS++ G+Y ++
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETED 94
Score = 32.9 bits (75), Expect = 0.017
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 10/79 (12%)
Query: 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAG 124
P E + C+V L + + + S +
Sbjct: 109 PMIYWECSNATLTCEVLEGTDVE-LKLYQGKEHLR---------SLRQKTMSYQWTNLRA 158
Query: 125 EYSCMAINTEGRGASQPII 143
+ C A+N + + ++
Sbjct: 159 PFKCKAVNRVSQESEMEVV 177
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 34.8 bits (79), Expect = 0.005
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNV 49
+ S + P +D + LTC+ + A + E T LNV
Sbjct: 166 LSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQG-AQVTTERTVQLNV 213
Score = 27.5 bits (60), Expect = 1.6
Identities = 12/125 (9%), Positives = 27/125 (21%), Gaps = 10/125 (8%)
Query: 22 DDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVS 81
+D R E ++ +I ++ G C +
Sbjct: 92 EDTGSYFFRVER---GRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLP 148
Query: 82 ANPRAH---RLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGA 138
+ A W N + + L L +C +
Sbjct: 149 GSCEAGPPLTFSWTGNA----LSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVT 204
Query: 139 SQPII 143
++ +
Sbjct: 205 TERTV 209
Score = 26.0 bits (56), Expect = 5.7
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
++G+ Y+ V+ N R+ + + G + N SL + + G Y
Sbjct: 42 FRDGEIPYYAEVVATNNPDRRVKPETQGR---FRLLGDVQKKNCSLSIGDARMEDTGSYF 98
Query: 128 CMAINTEGRGAS 139
S
Sbjct: 99 FRVERGRDVKYS 110
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 34.5 bits (78), Expect = 0.006
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSR 120
+ G C+++ R + W D + + L ++ S
Sbjct: 12 PPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT---GRSVLTVRNASL 68
Query: 121 QSAGEYSCMAINTEGRGASQPIILAV 146
+AG C+ GR + L V
Sbjct: 69 SAAGTRVCVGSC-GGRTFQHTVQLLV 93
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.9 bits (74), Expect = 0.011
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 13/90 (14%)
Query: 59 FGSSLNPTDIKEGDDVYFECQVSANPRAH--RLLWFHNDK-----------EIHHNVTGG 105
F + ++ G D +V+ + WF +
Sbjct: 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSA 74
Query: 106 IILSNISLVLQKVSRQSAGEYSCMAINTEG 135
+ + L + KV G Y +
Sbjct: 75 SNVYTVELHIGKVVLGDRGYYRLEVKAKDT 104
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 33.0 bits (75), Expect = 0.012
Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 68 IKEGDDVYFECQVSANPRAH--------RLLWFHNDKEIHHNVTGGIILS--NISLVLQK 117
++EG + +C S + ++ + + ++ + S +S+ +
Sbjct: 13 VEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPN 72
Query: 118 VSRQSAGEYSCMAINTEGRGASQPIILAV 146
V+ Q G Y C+ + ++ + + V
Sbjct: 73 VTLQDEGVYKCLHYSDSVS--TKEVKVIV 99
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 32.9 bits (74), Expect = 0.025
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 63 LNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSN----ISLVLQKV 118
+ ++ G F+C A LW + + S+ S +
Sbjct: 171 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNT 230
Query: 119 SRQSAGEYSCMAINTEGRGASQPIILAVK 147
+++ AG+Y CM G G S L VK
Sbjct: 231 TKRDAGKYRCMIRTEGGVGISNYAELVVK 259
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 31.8 bits (72), Expect = 0.038
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 25/101 (24%)
Query: 71 GDDVYFECQVS--ANPRAHRLLWFHND--KEIH--------------------HNVTGGI 106
GD+ C++S N + W+ + + +H + I
Sbjct: 21 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 80
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAVK 147
++L +Q V G Y+C + L V+
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCF-FRDHSYQEEAAVELKVE 120
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 31.4 bits (71), Expect = 0.040
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 17/106 (16%)
Query: 56 VIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDK----EIHHNVTGGIILS-- 109
I S+ + G +V + R+ W H E ++N T I S
Sbjct: 3 RIRARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEF 62
Query: 110 ---------NISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
N +L + V ++ G Y + I L V
Sbjct: 63 KGRVYLEENNGALHISNVRKEDKGTYYMRVLRETENELK--ITLEV 106
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 32.3 bits (73), Expect = 0.040
Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 9/83 (10%)
Query: 65 PTD--IKEGDDVYFECQVSANPR------AHRLLWFHNDKEIHHNVTGGIILSNISLVLQ 116
P ++ + C + A+ ++W N I I + S+
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69
Query: 117 KVSRQSAGEYSCMAINTEGRGAS 139
++ + +C + +
Sbjct: 70 DIASLNIQ-LTCNILTFGQLEQN 91
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 31.1 bits (70), Expect = 0.083
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEI---HHNVTGGIILSNISLVLQKVSRQSAG 124
+K + V +C ++ R L K H +S + + + + AG
Sbjct: 18 VKSEETVILQCW--SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAG 75
Query: 125 EYSCMAINTEGR-GASQP 141
Y C T S P
Sbjct: 76 TYRCYGSVTHSPYQLSAP 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.088
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 63/153 (41%)
Query: 11 VSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFGSSLN-PT-DI 68
V+ PF +S L A + + +D NV F + P D
Sbjct: 423 VA-SPF-------HSHLLVPASDLI-----NKDLVKNNVSFN-------AKDIQIPVYDT 462
Query: 69 KEGDDVYFECQVSANPRAHRLL---------WFHNDKEIHHNVT-------GGIILSNIS 112
+G D+ +V + + R++ W + T GG S +
Sbjct: 463 FDGSDL----RVLSGSISERIVDCIIRLPVKW---ETTTQFKATHILDFGPGGA--SGLG 513
Query: 113 LVLQKVSRQSAGEYSCMAINTEGRGASQPIILA 145
++ + N +G G +I+A
Sbjct: 514 VLTHR--------------NKDGTGVR--VIVA 530
Score = 28.9 bits (64), Expect = 0.71
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 42/131 (32%)
Query: 37 ANSSMEDTW---ILNV--HFVPRVVIHFG-----------SSL---NPTDIKEGDDVYFE 77
A++ +DT+ IL++ + + IHFG S++ D K + F+
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 78 CQVSANPRAHRLLWFHNDKEIHHNVTG----GIILSNISL--VLQK---VSRQSA----- 123
N + + + + T + L + L+ + +
Sbjct: 1709 ---EINEHSTSYTFRSEKGLL--SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 124 -GEYS---CMA 130
GEY+ +A
Sbjct: 1764 LGEYAALASLA 1774
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 30.9 bits (70), Expect = 0.10
Identities = 13/80 (16%), Positives = 20/80 (25%), Gaps = 11/80 (13%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ V CQ + + +K L + + R AG Y
Sbjct: 19 VPLEKPVTLRCQGPPG-----VDLYRLEKLSSSRYQ-----DQAVLFIPAMKRSLAGRYR 68
Query: 128 CMAINTEGR-GASQPIILAV 146
C N S + L
Sbjct: 69 CSYQNGSLWSLPSDQLELVA 88
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 30.0 bits (68), Expect = 0.11
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ GD V C + PR + + + + + + AG Y
Sbjct: 16 VSLGDTVTLRCHL---PRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQ 72
Query: 128 CMAINTEGRGASQP 141
C +E S
Sbjct: 73 CRYQVSEPLWTSNQ 86
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 29.8 bits (67), Expect = 0.12
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 21/96 (21%)
Query: 71 GDDVYFECQVSANPRA----HRLLWFHNDKEIHHNVTGG----------------IILSN 110
+ CQ + + + W + + + V G +
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+L L + + G Y C+ I+ + I
Sbjct: 69 WTLRLHNLQIKDKGLYQCI-IHHKKPTGMIRIHQMN 103
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 30.6 bits (69), Expect = 0.13
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGII------LSNISLVLQKVSRQ 121
+K + V +C F +E N T +I +S + + ++++
Sbjct: 19 VKSEETVILQCWSDVMFE-----HFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQD 73
Query: 122 SAGEYSCMAINTEGR-GASQP 141
AG Y C T S P
Sbjct: 74 LAGTYRCYGSVTHSPYQVSAP 94
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 30.3 bits (68), Expect = 0.13
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 56 VIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIH--------HNVTGGII 107
+ S L +I E V F Q ++ + N+KEI + GI
Sbjct: 38 TVPTKSELA-VEILEKGQVRFWMQAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGI- 95
Query: 108 LSNISLVLQKVSRQSAGEYSCMAINTEGRGAS 139
I + ++K+ + G Y+ + + G S
Sbjct: 96 ---IEMFMEKLQDEDEGTYTFQIQDGKATGHS 124
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 30.4 bits (68), Expect = 0.14
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 24/91 (26%)
Query: 71 GDDVYFECQVS--ANPRAHRLLWFHNDKEI----------------------HHNVTGGI 106
G+D C + + L W + + GI
Sbjct: 19 GEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI 78
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRG 137
+L + V+ +G+Y C + +
Sbjct: 79 TAGKAALRIHNVTASDSGKYLCYFQDGDFYE 109
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 29.6 bits (67), Expect = 0.15
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
I +G V C S + ++ D + + + V+ G YS
Sbjct: 20 ISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYS 79
Query: 128 C 128
C
Sbjct: 80 C 80
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 30.6 bits (69), Expect = 0.15
Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 10/120 (8%)
Query: 28 TCRAENTLIAN--SSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPR 85
TCR + S+ + ++ V R + +K G+ V +C ++
Sbjct: 90 TCRGSHPHSPTGWSAPSNPVVIMVTGNHRKP--SLLAHPGPLVKSGERVILQCW--SDIM 145
Query: 86 AHRLLWFHNDKEIHHNVTGGIILSNIS---LVLQKVSRQSAGEYSCMAINTEGR-GASQP 141
+ G I +S + + AG Y C T S P
Sbjct: 146 FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAP 205
Score = 30.6 bits (69), Expect = 0.15
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ G V C R + + + D+ G I S + V+ AG Y+
Sbjct: 35 VPRGGHVTLRCHYR--HRFNNFMLYKEDRIHIPIFHGRI--FQESFNMSPVTTAHAGNYT 90
Query: 128 CMAINTEGRGA----SQPIILAV 146
C + S P+++ V
Sbjct: 91 CRGSHPHSPTGWSAPSNPVVIMV 113
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 29.7 bits (66), Expect = 0.15
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
+ EG ++ C+V+ +P L + + I S ++ + + G +
Sbjct: 17 MTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLT 75
Query: 128 CMA 130
C A
Sbjct: 76 CEA 78
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 30.4 bits (68), Expect = 0.16
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTL 35
+ + V +D + +CRAE L
Sbjct: 139 AGEPPRARGAVLTATVLARREDHGANFSCRAELDL 173
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 30.2 bits (68), Expect = 0.19
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIIL--SNISLVLQKVSRQSAGE 125
I G+ V CQ R ++ + + + ++ AG
Sbjct: 16 ISWGNSVTIWCQG---TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGR 72
Query: 126 YSCMAINTEGRGA-SQPIILAV 146
Y C + G S P+ L +
Sbjct: 73 YRCYYRSPVGWSQPSDPLELVM 94
Score = 25.2 bits (55), Expect = 7.9
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 1/69 (1%)
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHH-NVTGGIILSNISLVLQKVS 119
S+L + G V CQ + L + G + V+
Sbjct: 104 SALPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVT 163
Query: 120 RQSAGEYSC 128
G Y C
Sbjct: 164 SVHGGTYRC 172
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 29.3 bits (66), Expect = 0.20
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYS 127
I +G V C S + ++ D + + + V+ G YS
Sbjct: 20 ISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYS 79
Query: 128 C 128
C
Sbjct: 80 C 80
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 29.4 bits (66), Expect = 0.32
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI-SLVLQKVSRQSAGEY 126
+ + V CQ + A + N + ++ + AG+Y
Sbjct: 15 VPKEKQVTICCQGN--YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 72
Query: 127 SCMAINTEGRGA-SQPIILAV 146
SC+ E S + L V
Sbjct: 73 SCIYRVGELWSEPSNLLDLVV 93
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 28.5 bits (63), Expect = 0.32
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 71 GDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAGEYSCMA 130
G V C + ++ W N +E+ ++L + S V + +G Y C
Sbjct: 14 GTSVELTCPLDSDENLK---WEKNGQELPQKHDKHLVLQDFSEV------EDSGYYVCYT 64
Query: 131 INTE 134
+
Sbjct: 65 PASN 68
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 28.7 bits (64), Expect = 0.35
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 30/106 (28%)
Query: 70 EGDDVYFECQVSANPRAHRLL---WFHNDKE--------IHHN----------------- 101
+G+ Y C+ + +P L W + + I ++
Sbjct: 19 KGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVH 78
Query: 102 -VTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+ + + S+ + + G Y C G ++ I L V
Sbjct: 79 FTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVV 123
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 29.1 bits (65), Expect = 0.38
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNI--SLVLQKVSRQSAGE 125
I G+ V CQ + + T + + ++ AG
Sbjct: 16 ISRGNSVTIRCQG---TLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGR 72
Query: 126 YSCMAINTEGRGA-SQPIILAVK 147
Y C + G S P+ L V
Sbjct: 73 YRCYYYSPAGWSEPSDPLELVVT 95
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 28.4 bits (63), Expect = 0.40
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 65 PTDIKEGDDVYFECQ-VSANPRAHRLLWF-----HNDKEIHHNVTGG------------- 105
P ++ EG +V + + + W+ +++I V G
Sbjct: 9 PFNVAEGKEVLLLVHNLPQHLFGYS--WYKGERVDGNRQIIGYVIGTQQATPGPAYSGRE 66
Query: 106 IILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
II N SL++Q + + AG Y+ I ++
Sbjct: 67 IIYPNASLLIQNIIQNDAGFYTLHVIKSDLV 97
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 29.0 bits (64), Expect = 0.42
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 14/100 (14%)
Query: 58 HFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEI----HHNVTG-------GI 106
+ + G V +CQV + + W + ++
Sbjct: 40 DSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQ-WSNPAQQTLYFGEKRALRDNRIQLVTS 98
Query: 107 ILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
+S+ + V+ GEY+C I T + ++ V
Sbjct: 99 TPHELSISISNVALADEGEYTCS-IFTMP-VRTAKSLVTV 136
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel,
translational REGU RNA chaperone, RNA/DNA binding, QB
fold, greek-KEY topology protein; NMR {Homo sapiens}
Length = 89
Score = 27.9 bits (62), Expect = 0.57
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 46 ILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGG 105
I V R+ HF L+ + D+V F V + + + +
Sbjct: 23 IKCVDRDVRMFFHFSEILDGNQLHIADEVEFT--VVPDMLS-------AQRNHAIRIK-- 71
Query: 106 IILSNISLVLQKVSRQSAG 124
L ++ S S+G
Sbjct: 72 -KLPKGTVSFHSHSGPSSG 89
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 28.7 bits (64), Expect = 0.58
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 10/79 (12%)
Query: 65 PTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGIILSNISLVLQKVSRQSAG 124
P E + C+V L + + + S +
Sbjct: 99 PMIYWECSNATLTCEVLEGTDVE-LKLYQGKEHLR---------SLRQKTMSYQWTNLRA 148
Query: 125 EYSCMAINTEGRGASQPII 143
+ C A+N + + ++
Sbjct: 149 PFKCKAVNRVSQESEMEVV 167
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 28.6 bits (63), Expect = 0.60
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 2 TSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTL 35
+ + T ++ +D + +C A L
Sbjct: 140 AAPAPQEATATF-NSTADREDGHRNFSCLAVLDL 172
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 28.7 bits (64), Expect = 0.68
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 68 IKEGDDVYFECQVSANPRAHRLL----WFHNDKEIHHNVTGGIILSNISLVLQKVSRQSA 123
+ + V CQ + ++L F D+ + + + ++ + A
Sbjct: 18 VPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERI-----NKVKFYIPDMNSRMA 72
Query: 124 GEYSCMAINTEGRGASQP 141
G+YSC+ E S+P
Sbjct: 73 GQYSCIYRVGELW--SEP 88
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 27.9 bits (62), Expect = 1.0
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTGGI--ILSNISLVLQKVSRQSAGE 125
I +G V CQ + + + +K+ +T ++ + ++ + G
Sbjct: 16 ITQGSPVTLRCQG---GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGR 72
Query: 126 YSCMAINTEGRGASQP 141
Y C + G S+
Sbjct: 73 YRCYYGSDTA-GRSES 87
Score = 25.2 bits (55), Expect = 8.4
Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 2/70 (2%)
Query: 61 SSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHN--VTGGIILSNISLVLQKV 118
S+ + G +V +C L D+ S + V
Sbjct: 105 SAQPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPV 164
Query: 119 SRQSAGEYSC 128
S Y C
Sbjct: 165 SPSRRWWYRC 174
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 27.2 bits (60), Expect = 1.4
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 23/87 (26%)
Query: 65 PTDIK--EGDDVYFECQVSANPRAHRLLW-------FHNDKEIHH--------------N 101
++K G V C S W + N
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 102 VTGGIILSNISLVLQKVSRQSAGEYSC 128
+ G I ++SL ++ +G Y C
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCC 90
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB
fold, cold shock structural genomics; NMR
{Pectobacterium atrosepticum}
Length = 74
Score = 26.5 bits (59), Expect = 1.4
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 55 VVIHFGSSLNPTDIKEGDDVYFECQVSAN-PRAHRLLWFHNDKEIHHN 101
H NP IK+ V FE + A+ + + HH+
Sbjct: 27 RYFHVIKVANPDLIKKDAAVTFEPTTNNKGLSAYAVKVVPLEHHHHHH 74
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 27.7 bits (61), Expect = 1.5
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 24/91 (26%)
Query: 71 GDDVYFECQVSANPR-----------------AHRLLWFHNDKEIHHNVTGGIILS---- 109
D+V C + + + F + G I+S
Sbjct: 18 NDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRL 77
Query: 110 ---NISLVLQKVSRQSAGEYSCMAINTEGRG 137
+ SL L + + AGEY C + T +
Sbjct: 78 KSGDASLRLPGIQLEEAGEYRCEVVVTPLKA 108
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 27.5 bits (61), Expect = 1.6
Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 9/103 (8%)
Query: 1 STSSSDSNVTVSYVPFKPSADDDNSKLTCRAENTLIANSSMEDTWILNVHFVPRVVIHFG 60
S S + P+ + TC A F P V +
Sbjct: 60 GCYSVSSVLPGCAEPW-----NHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPP 114
Query: 61 SSLNPTDIKEGDDVYFECQVSA-NPRAHRLLWFHNDKEIHHNV 102
S ++ + V C +P+ + W +E+
Sbjct: 115 PSE---ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREK 154
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 25.8 bits (57), Expect = 3.1
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 68 IKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVT-----GGIILSNISLVLQKVSRQS 122
I G V F C+ P + + +N T S + VS +
Sbjct: 20 IPLGSHVTFVCRG---PVGVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGN 76
Query: 123 AGEYSC 128
AG Y C
Sbjct: 77 AGPYRC 82
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 26.6 bits (58), Expect = 3.2
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 64 NPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKEIHHNVTG 104
P +K G+ + + V N + R L + N +
Sbjct: 298 KPFSVKAGEALKGKVTVHKNKKDPRSLTV----TLTLNNST 334
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP:
b.1.1.1 b.1.1.3
Length = 177
Score = 26.3 bits (57), Expect = 3.7
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 111 ISLVLQKVSRQSAGEYSCMAINTEGRGASQPIILAV 146
++L + +VS Q AG + + + Q + L V
Sbjct: 72 LTLQIPQVSLQFAGSGNL-TLTLDRGILYQEVNLVV 106
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 25.7 bits (56), Expect = 4.6
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 84 PRAHRLLWFHNDKE---IHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGR 136
+A+ LLW+ ++ + + G + L+ IS V +Q C IN +
Sbjct: 41 TQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQ 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 4.9
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query: 44 TWILNVHFVPRVVIHFGSSLNPT--------DIKEGDDVYFECQVSAN-PRAHRLLWFHN 94
L+ F+ + + H ++ N + +K +++ + N P+ RL+ N
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-----FYKPYICDNDPKYERLV---N 546
Query: 95 D-KEIHHNVTGGIILSNISLVLQ 116
+ + +I S + +L+
Sbjct: 547 AILDFLPKIEENLICSKYTDLLR 569
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 25.6 bits (55), Expect = 5.9
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 108 LSNISLVLQKVSRQSAGEYSCMAINTEGRG 137
L+ +L L V Q G Y C R
Sbjct: 89 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRT 118
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 25.3 bits (55), Expect = 6.0
Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 22/84 (26%)
Query: 71 GDDVYFECQVS--ANPRAHRLLWFH----NDKEIHHNVTGGIILS--------------- 109
DV +C R + W + I + G +
Sbjct: 16 KGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVP 75
Query: 110 -NISLVLQKVSRQSAGEYSCMAIN 132
++SL + + Y+C
Sbjct: 76 GDVSLQINTLQMDDRNHYTCEVTW 99
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown
function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A
3gqm_A
Length = 281
Score = 25.2 bits (54), Expect = 8.6
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 38 NSSMEDTWILNVHFVPRVVIHFGSSLNPTDIKEGDDVYFECQVSANPRAHRLLWFHNDKE 97
+SS+ +T + + +I L + Q + ++R++W
Sbjct: 6 SSSISNTNRTGENPMITPIISSNLGLKHRVTLRKATLASLMQSLSGESSNRVMWNDRYDT 65
Query: 98 IHHNVTGGIILSNISLVLQKVSRQSAGEYSCMAINTEGRGASQPIIL 144
+ I + I +S ++ + E G + P L
Sbjct: 66 LLIARDPREIKNAIE--------KSVTDFGGLENYKELTGGADPFAL 104
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure,
protein turnover, protein transport; HET: EPE; 2.50A
{Kluyveromyces marxianus}
Length = 274
Score = 25.4 bits (55), Expect = 9.5
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 51 FVPRVVIHFGSSLNPTDIKEGDDVYFEC 78
++P VV ++ + + +FE
Sbjct: 51 YLPTVVRKLADTIKVPYESDYRNWWFEY 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.383
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,112,977
Number of extensions: 114089
Number of successful extensions: 1011
Number of sequences better than 10.0: 1
Number of HSP's gapped: 671
Number of HSP's successfully gapped: 384
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)