Query psy15953
Match_columns 154
No_of_seqs 138 out of 1153
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 17:18:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01124 MAPEG: MAPEG family; 99.9 3.3E-24 7.2E-29 152.8 13.1 127 21-150 2-128 (129)
2 COG3686 Predicted membrane pro 99.9 9.2E-23 2E-27 142.6 13.8 121 20-150 4-124 (125)
3 COG3788 Uncharacterized relati 99.8 2.4E-17 5.3E-22 115.5 15.4 121 18-152 5-125 (131)
4 COG5331 Uncharacterized protei 99.1 1.8E-09 3.9E-14 76.3 10.3 79 70-149 53-131 (139)
5 PF09980 DUF2214: Predicted me 59.6 39 0.00084 25.0 5.9 33 12-44 74-106 (150)
6 PF11833 DUF3353: Protein of u 43.9 1.5E+02 0.0032 22.8 10.4 21 126-146 136-156 (194)
7 KOG1962|consensus 40.6 1.8E+02 0.0039 22.9 7.5 56 17-79 44-100 (216)
8 PF05232 BTP: Bacterial Transm 36.8 1.1E+02 0.0024 19.3 6.1 47 75-121 8-54 (67)
9 PF07578 LAB_N: Lipid A Biosyn 35.0 1.3E+02 0.0028 19.5 6.9 48 105-152 3-50 (72)
10 PF11119 DUF2633: Protein of u 28.7 1.1E+02 0.0025 19.0 3.5 23 100-122 10-32 (59)
11 PRK03830 small acid-soluble sp 25.1 66 0.0014 20.9 2.0 21 64-84 6-26 (73)
12 COG3556 Predicted membrane pro 22.3 3.2E+02 0.0069 20.0 5.9 23 67-89 121-143 (150)
13 TIGR03055 photo_alph_chp2 puta 20.0 4.7E+02 0.01 21.0 8.9 49 66-115 97-145 (245)
No 1
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=99.92 E-value=3.3e-24 Score=152.82 Aligned_cols=127 Identities=29% Similarity=0.418 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCChHHHHHHHHHhccchhHHHHHHHHHHHHhhCCCH
Q psy15953 21 LFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYMCTNPSP 100 (154)
Q Consensus 21 ~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~Ra~rAh~N~~E~~~~f~~~~l~a~~~~~~~ 100 (154)
++|+.++.+..++++..++..|.+.+...+.++... ++.+++.+++++|++|||+|++|++|+|+++++++.+.|.++
T Consensus 2 ~~~~~~l~~~~~~l~~~v~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~R~~ra~~N~~E~~~~f~~~~~~~~~~g~~~ 79 (129)
T PF01124_consen 2 AAWSALLVLLLFYLSYIVGAARFKAKVKGGEGDANP--RDNPPTLPPWLERAQRAHQNFLENLPLFLVAVLLAILTGASP 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHCCHHHTTT--SSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-T-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCc--ccccccCcHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCcH
Confidence 578889999999999999999988777543222111 122344678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15953 101 WLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 101 ~~~~~l~~~~~~~Ri~h~~~y~~~~~~~~~R~~~~~~~~~~~~~l~~~~l 150 (154)
.+++.++++|+++|+.|+.+|.. ++.++.|+.+|.+|+.+++.+++.++
T Consensus 80 ~~~~~l~~~~~~~R~~y~~~y~~-~~~~~~R~~~~~~~~~~~~~l~~~~~ 128 (129)
T PF01124_consen 80 SLAALLAWVFVVARVAYAVGYIA-GNIPPLRSLGFLVGLLCLLALALAAL 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-SSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999954 34678999999999999999998765
No 2
>COG3686 Predicted membrane protein [Function unknown]
Probab=99.90 E-value=9.2e-23 Score=142.59 Aligned_cols=121 Identities=25% Similarity=0.281 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCChHHHHHHHHHhccchhHHHHHHHHHHHHhhCCC
Q psy15953 20 YLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYMCTNPS 99 (154)
Q Consensus 20 ~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~Ra~rAh~N~~E~~~~f~~~~l~a~~~~~~ 99 (154)
..+|..+++...++++.....++ ..+.+++|||... +.++..+|++|||+|++|.+|.|.++++.+++.|.+
T Consensus 4 ~~w~V~i~i~lpl~~~~~A~~~~-g~~~Na~PRd~~~-------kl~G~a~RA~~A~~N~fE~fp~FaAavl~a~l~G~~ 75 (125)
T COG3686 4 ALWCVLIAILLPLLCSAYAKFEG-GRRWNAGPRDFLA-------KLQGLAGRANRAQQNFFETFPAFAAAVLVAHLTGNP 75 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCcCCCCchhhhc-------cCccHHHHHHHHHhhhHHhhHHHHHHHHHHHHcCCh
Confidence 45666666666666666555544 4778899999853 356688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15953 100 PWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 100 ~~~~~~l~~~~~~~Ri~h~~~y~~~~~~~~~R~~~~~~~~~~~~~l~~~~l 150 (154)
....+.+++.|+.+|++|++.|+. +.+++||++|++|+.++..+++...
T Consensus 76 ~~~~~~~A~l~i~~RllYi~~Yla--~~p~lRSlvW~~gmvg~~~lfv~~~ 124 (125)
T COG3686 76 SQAANTLAILFIAARLLYIPCYLA--DIPYLRSLVWLGGMVGTGALFVALA 124 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999953 4788999999999999999998754
No 3
>COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]
Probab=99.78 E-value=2.4e-17 Score=115.51 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCChHHHHHHHHHhccchhHHHHHHHHHHHHhhC
Q psy15953 18 RAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYMCTN 97 (154)
Q Consensus 18 ~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~Ra~rAh~N~~E~~~~f~~~~l~a~~~~ 97 (154)
.+...|+.+.++..+.+|+.+.+.|.|+++..+ +.+.++.+|+.|||.|..|++|.++++.++.++.|
T Consensus 5 mvstlyavl~~llll~LS~~vVrlR~k~rVa~g------------dgg~~eLqraira~gNatEYIPi~lill~~lemng 72 (131)
T COG3788 5 MVSALYAVLNALLLLKLSFDVVRLRMKYRVAYG------------DGGFSELQRAIRAHGNATEYIPIGLILLLFLEMNG 72 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhheec------------CCChHHHHHHHHHcCChHHHhHHHHHHHHHHHHcC
Confidence 456778899999999999999999999888643 34678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15953 98 PSPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAALY 152 (154)
Q Consensus 98 ~~~~~~~~l~~~~~~~Ri~h~~~y~~~~~~~~~R~~~~~~~~~~~~~l~~~~l~~ 152 (154)
..+.+.+.++.+++++|++|..+.. +.+.+.|..++..+++|.+.+.+..+..
T Consensus 73 a~tw~ihilG~il~~gRv~Ha~g~~--~~~~~~R~~Gm~aTw~~liv~~lanl~y 125 (131)
T COG3788 73 AETWMVHILGIILTAGRVLHAYGLH--HRLSPWRASGMSATWCALIVMVLANLWY 125 (131)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHh--ccCCcchhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988883 4478899999999999999998877654
No 4
>COG5331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=1.8e-09 Score=76.33 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=70.5
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy15953 70 ERTRRAHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQA 149 (154)
Q Consensus 70 ~Ra~rAh~N~~E~~~~f~~~~l~a~~~~~~~~~~~~l~~~~~~~Ri~h~~~y~~~~~~~~~R~~~~~~~~~~~~~l~~~~ 149 (154)
--..+.-.|++|-+.+|...++...+++.++.....++|+|+..|.+|..+|.+ .|.-..|+..|+.|+..+..+|++.
T Consensus 53 ~~V~nnl~NqFElPVLF~alcl~L~iT~~~n~vtv~lAWiFVl~Ry~Hs~VHvt-sN~lr~R~p~f~~gfavLa~~wiwf 131 (139)
T COG5331 53 LSVSNNLANQFELPVLFYALCLLLYITQAVNTVTVNLAWIFVLFRYAHSVVHVT-SNRLRLRQPLFLAGFAVLAVWWIWF 131 (139)
T ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhcccceeeeHHHHHHHHHHHHHHHheeh-hchhhhhhhHHHHHHHHHHHHHHHH
Confidence 345568999999999999999999999999999999999999999999999965 4556789999999999888888765
No 5
>PF09980 DUF2214: Predicted membrane protein (DUF2214); InterPro: IPR018706 This family has no known function.
Probab=59.57 E-value=39 Score=25.01 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=18.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15953 12 LSNPVFRAYLFYMSILIVKVLFSSLLTARQRFR 44 (154)
Q Consensus 12 l~~~~~~~~~~~~~ll~~~~~~~s~~~~~~R~~ 44 (154)
++||.|..=...-.+.++..+..+....+.|+.
T Consensus 74 ~~nP~F~~K~~lfvligllSi~PT~~~irWr~~ 106 (150)
T PF09980_consen 74 LHNPLFWAKMGLFVLIGLLSIYPTLTFIRWRKA 106 (150)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466665544444444455556666666666654
No 6
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=43.95 E-value=1.5e+02 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=14.4
Q ss_pred CCCchhHHHHHHHHHHHHHHH
Q psy15953 126 MPQPTRAIVWSVGYIINIYMA 146 (154)
Q Consensus 126 ~~~~~R~~~~~~~~~~~~~l~ 146 (154)
+....|+.+|.++.+..-.++
T Consensus 136 ~~~~~rA~~~~~~~L~~G~~l 156 (194)
T PF11833_consen 136 ERKLGRAFLWTLGGLVVGLIL 156 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 356799999888876544443
No 7
>KOG1962|consensus
Probab=40.56 E-value=1.8e+02 Score=22.87 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCChhhhHHhhccCCCCCChHHHHHHHHHhcc
Q psy15953 17 FRAYLFYMSILIVKVLFSSLLTARQRFRK-RVFISPEDTVLARGAKCIKDDPDVERTRRAHAND 79 (154)
Q Consensus 17 ~~~~~~~~~ll~~~~~~~s~~~~~~R~~~-~~~~~p~d~~~~~~~~~~~~~~~~~Ra~rAh~N~ 79 (154)
+..+..+...+.+..+..++.-.+.|.+. +...||.|.. ....+..+..-|+++|.
T Consensus 44 ~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~~~~-------~a~~~~~~~l~raqrn~ 100 (216)
T KOG1962|consen 44 VLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPTDQP-------LARTHLLEALFRAQRNL 100 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccch-------HHHHHHHHHHHHHHhhh
Confidence 34444444455555666666655555432 2334555542 11334566788888886
No 8
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=36.78 E-value=1.1e+02 Score=19.25 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=40.5
Q ss_pred HHhccchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15953 75 AHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVY 121 (154)
Q Consensus 75 Ah~N~~E~~~~f~~~~l~a~~~~~~~~~~~~l~~~~~~~Ri~h~~~y 121 (154)
.|.=.+|...+.+..-+++...|.+...+..+...+.+.=.+|+.+|
T Consensus 8 ~hai~FE~~~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~if 54 (67)
T PF05232_consen 8 LHAILFEVGALLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIF 54 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999988888888888888777777777
No 9
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=35.00 E-value=1.3e+02 Score=19.50 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15953 105 TLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAALY 152 (154)
Q Consensus 105 ~l~~~~~~~Ri~h~~~y~~~~~~~~~R~~~~~~~~~~~~~l~~~~l~~ 152 (154)
.++.+.+.+|.++=+.|.--.+.+.....+|..+....+.+++..+.+
T Consensus 3 ~~gq~lF~~Rf~~QW~~SEk~k~sv~P~~FW~lSl~Gs~lll~Y~i~r 50 (72)
T PF07578_consen 3 FIGQLLFSSRFIVQWIYSEKAKKSVVPVAFWYLSLIGSLLLLIYAIIR 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999995433445678899999999888888776654
No 10
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=28.72 E-value=1.1e+02 Score=18.96 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15953 100 PWLAQTLFLVYAVSRIVYTVVYA 122 (154)
Q Consensus 100 ~~~~~~l~~~~~~~Ri~h~~~y~ 122 (154)
..++.+...+.+.+|++|..+=.
T Consensus 10 triVLLISfiIlfgRl~Y~~I~a 32 (59)
T PF11119_consen 10 TRIVLLISFIILFGRLIYSAIGA 32 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 45677888899999999986543
No 11
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=25.14 E-value=66 Score=20.89 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.4
Q ss_pred CCChHHHHHHHHHhccchhHH
Q psy15953 64 KDDPDVERTRRAHANDLENIP 84 (154)
Q Consensus 64 ~~~~~~~Ra~rAh~N~~E~~~ 84 (154)
.-.+-++|+|..-+|++||+=
T Consensus 6 dRsDNVEkLQ~mi~nTieNi~ 26 (73)
T PRK03830 6 DRSDNVEKLQEMIQNTIENIE 26 (73)
T ss_pred cccchHHHHHHHHHHHHHHHH
Confidence 345679999999999999974
No 12
>COG3556 Predicted membrane protein [Function unknown]
Probab=22.29 E-value=3.2e+02 Score=19.97 Aligned_cols=23 Identities=30% Similarity=0.223 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhccchhHHHHHHH
Q psy15953 67 PDVERTRRAHANDLENIPFFFTA 89 (154)
Q Consensus 67 ~~~~Ra~rAh~N~~E~~~~f~~~ 89 (154)
..+.+..|.+.-.+--+|+|..+
T Consensus 121 a~vr~~ir~e~lllllIPl~Aal 143 (150)
T COG3556 121 ASVRTYIRLEALLLLLIPLFAAL 143 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788877777777776544
No 13
>TIGR03055 photo_alph_chp2 putative photosynthetic complex assembly protein 2. This uncharacterized protein family was identified, by the method of partial phylogenetic profiling, as having a matching phylogenetic distribution to that of the photosynthetic reaction center of the alpha-proteobacterial type. It is nearly always encoded near other photosynthesis-related genes, including puhA.
Probab=20.01 E-value=4.7e+02 Score=21.00 Aligned_cols=49 Identities=12% Similarity=-0.084 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHhccchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Q psy15953 66 DPDVERTRRAHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRI 115 (154)
Q Consensus 66 ~~~~~Ra~rAh~N~~E~~~~f~~~~l~a~~~~~~~~~~~~l~~~~~~~Ri 115 (154)
.+++.|+-+.... -|...+.....++....|.+|....+...+....|+
T Consensus 97 ~~RF~~A~~t~l~-HE~~l~~~~~~~~~lt~ga~N~~g~wTf~~Lw~mr~ 145 (245)
T TIGR03055 97 FERFLRALGTILW-HEICLLACGILVLVLTWGAENQVGLWTFVVLWVMRV 145 (245)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Confidence 3455555555555 577777777777777788888766655555555554
Done!