Query psy15953
Match_columns 154
No_of_seqs 138 out of 1153
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:18:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dww_A Prostaglandin E synthas 100.0 2E-35 7E-40 219.0 10.7 143 9-152 11-153 (158)
2 2h8a_A Microsomal glutathione 100.0 1.3E-31 4.6E-36 197.7 2.4 142 10-152 5-150 (154)
3 3pcv_A Leukotriene C4 synthase 99.9 7E-23 2.4E-27 151.2 16.7 121 15-150 3-123 (156)
4 2q7r_A Arachidonate 5-lipoxyge 99.9 3.7E-23 1.3E-27 153.5 10.7 120 16-150 8-127 (161)
5 1lgh_A LH II, B800/850, light 8.4 3.6E+02 0.012 15.7 3.4 24 128-151 14-37 (56)
6 3ehu_C Corticoliberin; G prote 6.3 2E+02 0.0069 13.4 0.9 8 71-78 6-13 (21)
7 3dxe_B Amyloid beta A4 protein 6.1 3.5E+02 0.012 14.1 1.9 18 66-83 8-25 (35)
8 2lp1_A C99; alzheimer'S D memb 7.5 1.4E+02 0.0047 20.3 0.0 18 67-84 74-91 (122)
9 2i15_A A05_ORF129, hypothetica 5.2 3.8E+02 0.013 17.7 2.1 21 73-93 93-113 (135)
10 1bl1_A Parathyroid hormone rec 5.0 3.4E+02 0.012 13.8 1.4 8 114-121 21-28 (31)
No 1
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle, isomerase, membrane, transmembrane; HET: GSH; 3.50A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=218.95 Aligned_cols=143 Identities=33% Similarity=0.582 Sum_probs=124.7
Q ss_pred hcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCChHHHHHHHHHhccchhHHHHHH
Q psy15953 9 IMDLSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFT 88 (154)
Q Consensus 9 ~~~l~~~~~~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~Ra~rAh~N~~E~~~~f~~ 88 (154)
-.+++||+++.+++|++++++|++++++.+++.|.++|++.||||....++.+.+.++++++|++|||+|++|++|+|++
T Consensus 11 ~~~~~~~v~~~~a~~a~ll~lk~l~ls~~t~~~R~~~kvf~~pED~~~~g~~~~~~~~~~~~Ra~RAh~N~lE~~p~Fl~ 90 (158)
T 3dww_A 11 SLVMSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCRSDPDVERCLRAHRNDMETIYPFLF 90 (158)
T ss_dssp ------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCSTTSCCSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCChHHHHhcCCccccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999975432223334678999999999999999999999
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15953 89 AAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAALY 152 (154)
Q Consensus 89 ~~l~a~~~~~~~~~~~~l~~~~~~~Ri~h~~~y~~~~~~~~~R~~~~~~~~~~~~~l~~~~l~~ 152 (154)
+++++.++|+++.++..++++|+++|++|+.+|+. +.+++.|+++|.+|+++++.|.++++..
T Consensus 91 ~~ll~~l~g~~~~~~~~l~~~fv~~Rilh~~~Y~~-~~p~~~Rsl~~~vg~~~~~~m~~~~l~~ 153 (158)
T 3dww_A 91 LGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAYLG-KLRAPIRSVTYTLAQLPCASMALQILWE 153 (158)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHTTS-SCCGGGGHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999953 4457899999999999999999998875
No 2
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH; 3.20A {Rattus norvegicus} SCOP: f.56.1.1
Probab=99.96 E-value=1.3e-31 Score=197.68 Aligned_cols=142 Identities=35% Similarity=0.521 Sum_probs=113.5
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHh----hccCCCCCChHHHHHHHHHhccchhHHH
Q psy15953 10 MDLSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLA----RGAKCIKDDPDVERTRRAHANDLENIPF 85 (154)
Q Consensus 10 ~~l~~~~~~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~----~~~~~~~~~~~~~Ra~rAh~N~~E~~~~ 85 (154)
.+++||+++.+++|++++++++++++..+++.|.++|.+.+|||.... ++++...++++++|++|||+|++|++|+
T Consensus 5 ~~~~~~~~~~~~~~a~ll~l~~l~~s~~v~~~R~~~~~~~~~ed~~~~g~~~~~~~~~~~~~~~~Ra~rAh~N~~E~~p~ 84 (154)
T 2h8a_A 5 QLMDNEVLMAFTSYATIILAKMMFLSSATAFQRLTNKVFANPEDCAGFGKGENAKKFLRTDEKVERVRRAHLNDLENIVP 84 (154)
T ss_dssp ----CHHHHHHHHHHHHHHTTHHHHGGGSCCCCCCCTTC------------------CHHHHHHHHHHHHHHHHHHTTHH
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHhhhcccccccccccCCHHHHHHHHHHHhhhhHHHH
Confidence 347999999999999999999999999999999999998899887431 2223334678999999999999999999
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15953 86 FFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAALY 152 (154)
Q Consensus 86 f~~~~l~a~~~~~~~~~~~~l~~~~~~~Ri~h~~~y~~~~~~~~~R~~~~~~~~~~~~~l~~~~l~~ 152 (154)
|+++++++.++|+++.+++.++++|+++|++|+.+|+. +++.+.|+.+|.+|+++++.|+++++.+
T Consensus 85 F~~~~ll~~~~g~~~~~~~~l~~~~v~~Ri~h~~~y~~-~~~~~~R~~~~~~~~~~~~~l~~~~l~~ 150 (154)
T 2h8a_A 85 FLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAYLT-PLPQPNRGLAFFVGYGVTLSMAYRLLRS 150 (154)
T ss_dssp HHHHHHHTTTSCCCSTTHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHTHHHHHHHHTC---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999953 4444899999999999999999987654
No 3
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=99.91 E-value=7e-23 Score=151.23 Aligned_cols=121 Identities=22% Similarity=0.137 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCChHHHHHHHHHhccchhHHHHHHHHHHHH
Q psy15953 15 PVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYM 94 (154)
Q Consensus 15 ~~~~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~Ra~rAh~N~~E~~~~f~~~~l~a~ 94 (154)
+.+...++++.+..+..+++++.+++.|+|.|+. .|+|. ++++++|++|||+|++|++|+|+++.+++.
T Consensus 3 ~el~lla~v~vl~~l~~~~~s~~V~~~R~k~~V~-~P~~~----------g~~~f~Ra~RAH~N~lE~~P~fl~ll~l~~ 71 (156)
T 3pcv_A 3 DEVALLAAVTLLGVLLQAYFSLQVISARRAFRVS-PPLTT----------GPPEFERVYRAQVNCSEYFPLFLATLWVAG 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-TTCCC----------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCC----------CCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3466777888888888999999999999887774 45553 578999999999999999999999999999
Q ss_pred hhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15953 95 CTNPSPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~Ri~h~~~y~~~~~~~~~R~~~~~~~~~~~~~l~~~~l 150 (154)
+.++ +.++..++++|+++|+.|+.+|.. + ++.|+.+|.+++.+++.+++...
T Consensus 72 l~~~-~~~a~~lg~~~~~gRily~~gY~~-~--~~~R~~G~~~t~~~~~~L~~~~~ 123 (156)
T 3pcv_A 72 IFFH-EGAAALCGLVYLFARLRYFQGYAR-S--AQLRLAPLYASARALWLLVALAA 123 (156)
T ss_dssp HHTC-HHHHHHHHHHHHHHHHHHHHHHHH-C--GGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-HHHHHHHHHHHHHHHHHHHHHHhc-C--CCccHHHHHHHHHHHHHHHHHHH
Confidence 9885 578999999999999999999953 3 77999999999999998887543
No 4
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg, membrane protein, lipid transport; HET: 3CS; 4.00A {Homo sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Probab=99.89 E-value=3.7e-23 Score=153.48 Aligned_cols=120 Identities=16% Similarity=0.074 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCChHHHHHHHHHhccchhHHHHHHHHHHHHh
Q psy15953 16 VFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYMC 95 (154)
Q Consensus 16 ~~~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~Ra~rAh~N~~E~~~~f~~~~l~a~~ 95 (154)
.+...++++.+..++.++++..+++.|+|.|+.. |+ +.++++++|++|||+|++|++|+|+++++++.+
T Consensus 8 e~~~~~l~a~l~~l~~~~~s~~V~~~R~k~~V~~-p~----------~~g~~~f~R~~RAh~N~lE~~P~fl~llll~~l 76 (161)
T 2q7r_A 8 NVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRS-FQ----------RTGTLAFERVYTANQNCVDAYPTFLAVLWSAGL 76 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS-CC----------SCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCCC-CC----------CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677777888888899999999999999877652 32 236789999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15953 96 TNPSPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~Ri~h~~~y~~~~~~~~~R~~~~~~~~~~~~~l~~~~l 150 (154)
.| ++.++..++++|+++|+.|+.+| . .++ ..|+.+|.+|+++++.+++..+
T Consensus 77 ~g-~~~~a~~~G~i~l~gRily~~gY-~-~~p-~~R~~G~~~~~l~l~~l~~~~l 127 (161)
T 2q7r_A 77 LC-SQVPAAFAGLMYLFVRQKYFVGY-L-GER-TQSTPGYIFGKRIILFLFLMSV 127 (161)
T ss_dssp HS-CHHHHHHHHHHHHHHHHHHHHHT-C-CSS-SCCCCCSCCCHHHHHHHHHHHH
T ss_pred cC-ChHHHHHHHHHHHHHHHHHHHHH-h-CCC-cchHHHHHHHHHHHHHHHHHHH
Confidence 99 78899999999999999999999 3 334 4899999888888877776543
No 5
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=8.37 E-value=3.6e+02 Score=15.67 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=16.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q psy15953 128 QPTRAIVWSVGYIINIYMAVQAAL 151 (154)
Q Consensus 128 ~~~R~~~~~~~~~~~~~l~~~~l~ 151 (154)
.|-|.+.-+.+++..+.+.++.++
T Consensus 14 dP~~~L~~l~~~v~vlAllIH~~l 37 (56)
T 1lgh_A 14 NPSTWLPVIWIVATVVAIAVHAAV 37 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777776543
No 6
>3ehu_C Corticoliberin; G protein-coupled receptor, corticotropin releasing factor, fold, MBP fusion, extracellular domain, sugar transport; HET: BTB MAL; 1.96A {Escherichia coli}
Probab=6.28 E-value=2e+02 Score=13.36 Aligned_cols=8 Identities=38% Similarity=0.613 Sum_probs=5.1
Q ss_pred HHHHHHhc
Q psy15953 71 RTRRAHAN 78 (154)
Q Consensus 71 Ra~rAh~N 78 (154)
-++.||.|
T Consensus 6 ~~qQA~~N 13 (21)
T 3ehu_C 6 LAQQAHSN 13 (26)
T ss_pred HHHHHHHh
Confidence 35667776
No 7
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=6.10 E-value=3.5e+02 Score=14.08 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHhccchhH
Q psy15953 66 DPDVERTRRAHANDLENI 83 (154)
Q Consensus 66 ~~~~~Ra~rAh~N~~E~~ 83 (154)
.++-.-..+-|.|.-||+
T Consensus 8 tpEErh~~~mQ~~GYENP 25 (35)
T 3dxe_B 8 APEERHLSKMQQNGYENP 25 (35)
T ss_dssp CHHHHHHHHHHHTCEECH
T ss_pred ChhHHHHHHHHhccCcCc
Confidence 444455778899999994
No 8
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=7.46 E-value=1.4e+02 Score=20.27 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhccchhHH
Q psy15953 67 PDVERTRRAHANDLENIP 84 (154)
Q Consensus 67 ~~~~Ra~rAh~N~~E~~~ 84 (154)
|+-.....-|+|+-||+.
T Consensus 74 PEERHva~MQ~nGYENPT 91 (122)
T 2lp1_A 74 PEERHLSKMQQNGYENPT 91 (122)
Confidence 444457788999999975
No 9
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural genomics, MPN423, hypothetical protien, all alpha structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP: a.291.1.1
Probab=5.18 E-value=3.8e+02 Score=17.69 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=15.8
Q ss_pred HHHHhccchhHHHHHHHHHHH
Q psy15953 73 RRAHANDLENIPFFFTAAFAY 93 (154)
Q Consensus 73 ~rAh~N~~E~~~~f~~~~l~a 93 (154)
+.+-+|..|.+.+|+.+..+.
T Consensus 93 ~~ccq~fyeal~~fisalait 113 (135)
T 2i15_A 93 KSCCQSFYEALTLFISALAIT 113 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999987765443
No 10
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=4.99 E-value=3.4e+02 Score=13.82 Aligned_cols=8 Identities=50% Similarity=0.949 Sum_probs=4.6
Q ss_pred HHHHHHHH
Q psy15953 114 RIVYTVVY 121 (154)
Q Consensus 114 Ri~h~~~y 121 (154)
.+.|+++|
T Consensus 21 ~~iYTVGY 28 (31)
T 1bl1_A 21 GMIYTVGY 28 (31)
T ss_dssp HHHHHHHH
T ss_pred eeEEEEee
Confidence 34566666
Done!