RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15953
(154 letters)
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle,
isomerase, membrane, transmembrane; HET: GSH; 3.50A
{Homo sapiens}
Length = 158
Score = 156 bits (395), Expect = 6e-50
Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 8 SIMDLSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDP 67
+ +S+P A+L ++L++K+ +++T + R RK+ F +PED + G + + DP
Sbjct: 10 HSLVMSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCRSDP 69
Query: 68 DVERTRRAHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYAVVVMP 127
DVER RAH ND+E I F F Y P+P++A FLV+ V R+ +TV Y + +
Sbjct: 70 DVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAY-LGKLR 128
Query: 128 QPTRAIVWSVGYIINIYMAVQ 148
P R++ +++ + MA+Q
Sbjct: 129 APIRSVTYTLAQLPCASMALQ 149
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH;
3.20A {Rattus norvegicus} SCOP: f.56.1.1
Length = 154
Score = 142 bits (358), Expect = 3e-44
Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 12 LSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVL----ARGAKCIKDDP 67
+ N V A+ Y +I++ K++F S TA QR +VF +PED K ++ D
Sbjct: 7 MDNEVLMAFTSYATIILAKMMFLSSATAFQRLTNKVFANPEDCAGFGKGENAKKFLRTDE 66
Query: 68 DVERTRRAHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYAVVVMP 127
VER RRAH NDLENI F Y + P A F ++ +RI +T+ Y + +P
Sbjct: 67 KVERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPLP 125
Query: 128 QPTRAIVWSVGYIINIYMAVQ---AALYF 153
QP R + + VGY + + MA + + LY
Sbjct: 126 QPNRGLAFFVGYGVTLSMAYRLLRSRLYL 154
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO
trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo
sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A*
3leo_A*
Length = 156
Score = 37.8 bits (87), Expect = 4e-04
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 1/89 (1%)
Query: 66 DPDVERTRRAHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYAVVV 125
P+ ER RA N E P F + A LVY +R+ Y YA
Sbjct: 43 PPEFERVYRAQVNCSEYFPLFLATLWVA-GIFFHEGAAALCGLVYLFARLRYFQGYARSA 101
Query: 126 MPQPTRAIVWSVGYIINIYMAVQAALYFY 154
+ + + + +A L +
Sbjct: 102 QLRLAPLYASARALWLLVALAALGLLAHF 130
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg,
membrane protein, lipid transport; HET: 3CS; 4.00A {Homo
sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Length = 161
Score = 34.2 bits (78), Expect = 0.006
Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 65 DDPDVERTRRAHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYA 122
ER A+ N ++ P F A S A L+Y R Y V Y
Sbjct: 46 GTLAFERVYTANQNCVDAYPTFL-AVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYL 102
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming
nucleotide, nucleotidyltransfera superfamily; HET: CTP;
1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7
d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A*
1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A*
2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A
2zh4_A ...
Length = 437
Score = 28.8 bits (64), Expect = 0.82
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 17 FRAYLFYMSILIVKV-LFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRA 75
F YL +LIV F + +R+ +R I + +G + DP E+ A
Sbjct: 170 FSGYL--CELLIVFYGSFLETVKNARRWTRRTVIDVAKGEVRKGEEFFVVDPVDEKRNVA 227
Query: 76 HANDLENIPFFFTAAFAYMCTNPS 99
L+N+ F +M PS
Sbjct: 228 ANLSLDNLARFVHLCREFM-EAPS 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.99
Identities = 30/144 (20%), Positives = 37/144 (25%), Gaps = 42/144 (29%)
Query: 2 ANTSITSIM------DLSNPVF--RAYLFYMSILIVKVLFS-------------SL---- 36
N TS LS F A L M + L S SL
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPA-LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 37 -LTARQRFRKRVFISPEDT---VLARGAKCIKDDPDVERTRRAHA----NDLENIPFFFT 88
L + +S E V RG P E R + N F
Sbjct: 1769 ALASLAD-----VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 89 AAFAYMCTNPSPWLAQTLFLVYAV 112
A Y+ +T +LV V
Sbjct: 1824 EALQYVVERVG---KRTGWLVEIV 1844
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll,
dexter energy transfer, foerster exciton transfer
mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum
molischianum} SCOP: f.3.1.1
Length = 56
Score = 25.1 bits (54), Expect = 3.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 93 YMCTNPSPWLAQTLFLVYAVSRIVYTVVYAV 123
++ NPS WL + V+ V+ V A
Sbjct: 10 WLVINPSTWLPVIWIVATVVAIAVHAAVLAA 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.139 0.419
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,433,134
Number of extensions: 138704
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 9
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.7 bits)