RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15953
         (154 letters)



>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 139

 Score =  125 bits (315), Expect = 3e-38
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 14  NPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVL----ARGAKCIKDDPDV 69
           N V  A+  Y +I++ K++F S  TA QR   +VF +PED           K ++ D  V
Sbjct: 1   NEVLMAFTSYATIILAKMMFLSSATAFQRLTNKVFANPEDCAGFGKGENAKKFLRTDEKV 60

Query: 70  ERTRRAHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYAVVVMPQP 129
           ER RRAH NDLENI  F      Y  + P    A   F ++  +RI +T+ Y +  +PQP
Sbjct: 61  ERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPLPQP 119

Query: 130 TRAIVWSVGYIINIYMAVQ 148
            R + + VGY + + MA +
Sbjct: 120 NRGLAFFVGYGVTLSMAYR 138


>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 146

 Score = 62.5 bits (152), Expect = 8e-14
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 66  DPDVERTRRAHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYAVVV 125
            P+ ER  RA  N  E  P F    +           A    LVY  +R+ Y   YA   
Sbjct: 42  PPEFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAA-LCGLVYLFARLRYFQGYARSA 100

Query: 126 MPQPTRAIVWSVGYIINIYMAVQAALYFY 154
             +       +    + + +A    L  +
Sbjct: 101 QLRLAPLYASARALWLLVALAALGLLAHF 129


>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating
           protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 66  DPDVERTRRAHANDLENIPFFFTAAFAYMCTNPSPWLAQTLFLVYAVSRIVYTVVYAVVV 125
               ER   A+ N ++  P F    ++      S   A    L+Y   R  Y V Y    
Sbjct: 47  TLAFERVYTANQNCVDAYPTFLAVLWS-AGLLCSQVPAAFAGLMYLFVRQKYFVGYLGER 105

Query: 126 MPQPTRAIVWSVGYIINIYMAVQAALYFY 154
                  I      +    M+V     +Y
Sbjct: 106 TQSTPGYIFGKRIILFLFLMSVAGIFNYY 134


>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 26.0 bits (57), Expect = 1.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 36 LLTARQRFRKRVFISPEDTVL 56
          L   R + RK+V+I+  D +L
Sbjct: 57 LCHIRGKLRKKVWINTSDIIL 77


>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 115

 Score = 25.1 bits (55), Expect = 2.2
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 33  FSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHAN-DLENIPFFFTAAF 91
           F   +   +R+ +R  I      + +G +    DP V+  R   AN  L+N+  F     
Sbjct: 43  FLETVKNARRWTRRTVIDVAKGEVRKGEEFFVVDP-VDEKRNVAANLSLDNLARFVHLCR 101

Query: 92  AYMCTNPS 99
            +M   PS
Sbjct: 102 EFM-EAPS 108


>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 102

 Score = 25.0 bits (55), Expect = 2.4
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 40 RQRFRKRVFISPEDTVL 56
            R + R+++   D V+
Sbjct: 50 PGRLKNRIWVREGDVVI 66


>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens
           [TaxId: 34413]}
          Length = 210

 Score = 25.5 bits (56), Expect = 2.7
 Identities = 5/10 (50%), Positives = 7/10 (70%)

Query: 92  AYMCTNPSPW 101
           AY C + +PW
Sbjct: 53  AYSCADQTPW 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,179
Number of extensions: 25253
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 9
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (22.8 bits)