BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15955
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 189/282 (67%), Gaps = 6/282 (2%)
Query: 99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIK 158
SE +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+
Sbjct: 2 SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH 61
Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT 218
R+TLNP +NE F+ P +L + L + V+D+DRFS+ D IGE +P+ VD
Sbjct: 62 RKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 120
Query: 219 FWKALKPPAKD---KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQ 275
W+ L+ K+ K G++ SL Y P+ LT+ +L+A+NLK D+ G SDPYVK+ L
Sbjct: 121 EWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 180
Query: 276 FGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRIL 335
KR++K+KT I K LNP +NESFSF VP+E+I++ + V V+D+D IG+N+ IG++
Sbjct: 181 QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 240
Query: 336 LAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
+ G N +GA E +HW DM+ PR+ I QWH L+ + E+ L
Sbjct: 241 V-GYNSTGA-ELRHWSDMLANPRRPIAQWHTLQVEEEVDAML 280
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 90 DMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD- 148
D+ E E +G I FSL Y L + ++ AK L D+ G SDPYVK+ L+ +
Sbjct: 124 DLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 183
Query: 149 -KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
+ + +T IK+ TLNP +NE+ FE P +++Q + + V DYD+ ++D+IG+VF+
Sbjct: 184 KRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 178/285 (62%), Gaps = 8/285 (2%)
Query: 97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETK 156
E G+I F+L Y + + L++R++ A +LPAKD +G SDPYVK+ LLPD+K + +TK
Sbjct: 2 EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 61
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
+ R+TLNP +NET F P+ +L R LH V+D+DRFSR D IG+V L ++L+E+
Sbjct: 62 VHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL-LELAEQ 119
Query: 217 PT---FWKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVK 271
P W+ + +K GEL SLCY P+ +LT+T++KA NLKA D+ G SDPYVK
Sbjct: 120 PPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVK 179
Query: 272 VWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELI 331
L +R++KRKT I K LNP +NE+ F+V E + L++ V+D+D IG NE+I
Sbjct: 180 ASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVI 239
Query: 332 GRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTF 376
G + G + +HW +M+ PR+ + WH+L + + +F
Sbjct: 240 G-VCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSSF 283
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 178/285 (62%), Gaps = 8/285 (2%)
Query: 97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETK 156
E G+I F+L Y + + L++R++ A +LPAKD +G SDPYVK+ LLPD+K + +TK
Sbjct: 1 EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 60
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
+ R+TLNP +NET F P+ +L R LH V+D+DRFSR D IG+V L ++L+E+
Sbjct: 61 VHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL-LELAEQ 118
Query: 217 PT---FWKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVK 271
P W+ + +K GEL SLCY P+ +LT+T++KA NLKA D+ G SDPYVK
Sbjct: 119 PPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVK 178
Query: 272 VWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELI 331
L +R++KRKT I K LNP +NE+ F+V E + L++ V+D+D IG NE+I
Sbjct: 179 ASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVI 238
Query: 332 GRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTF 376
G + G + +HW +M+ PR+ + WH+L + + +F
Sbjct: 239 G-VCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSSF 282
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 103/126 (81%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
EN+G+I FS+ Y+F STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct: 10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 69
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
+ LNP WNET FEGFP +K+ R+L+L V DYDRFSR+D IGEV +PL +VDL++ TF
Sbjct: 70 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 129
Query: 220 WKALKP 225
WK LKP
Sbjct: 130 WKDLKP 135
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQ 287
++ G + S+ Y+ S LT+ ++KA+ L AKD +G SDP+VK++L +K K +T+
Sbjct: 9 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKK--HKLETK 66
Query: 288 IFKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASE 346
+ + NLNP +NE+F F P+EK+ + L + V+D+D RN+ IG + +
Sbjct: 67 VKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQM 126
Query: 347 TKHWQDM 353
W+D+
Sbjct: 127 QTFWKDL 133
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + +KR+EK+KT K
Sbjct: 3 GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+ K+G G E KHW+
Sbjct: 63 NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPG--EVKHWK 120
Query: 352 DMITKPRQTIVQWHRLK 368
DMI +PRQ + QWH+LK
Sbjct: 121 DMIARPRQPVAQWHQLK 137
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRR 160
G++ SL Y+ +++I+ +I A+ L A D+ GTSDPYVKV L+ K + +T K+R
Sbjct: 3 GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
LNP +NE+ F+ P +KL+ + + V D D+ SR+D IG+++L
Sbjct: 63 NLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 107
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
GELL SLCY + + LT+ +LKAR+L D++G SDPYVKV L +KRI K+KT + KC
Sbjct: 17 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL-AGKNGSGASETKHW 350
N VFNE F F++P E + E S+ +V+D + RNE+IGR++L A GSG HW
Sbjct: 77 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGG---HW 133
Query: 351 QDMITKPRQTIVQWHRL 367
+++ PR+ I +WH L
Sbjct: 134 KEICDFPRRQIAKWHML 150
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRR 160
G++ SL Y +TL + V+ A+ LP D+SG SDPYVKV L KK + +T +K+
Sbjct: 17 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
T N +NE F+ P + L+ + V D +R SR++ IG + L
Sbjct: 77 TPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Query: 228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQ 287
++K G++ SL Y P+ LT+ +L+A+NLK D+ G SDPYVK+ L KR++K+KT
Sbjct: 1 QEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTT 60
Query: 288 IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASET 347
I K LNP +NESFSF VP+E+I++ + V V+D+D IG+N+ IG++ + G N +GA E
Sbjct: 61 IKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-GYNSTGA-EL 118
Query: 348 KHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
+HW DM+ PR+ I QWH L+ + E+ L
Sbjct: 119 RHWSDMLANPRRPIAQWHTLQVEEEVDAML 148
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETK 156
E +G I FSL Y L + ++ AK L D+ G SDPYVK+ L+ + + + +T
Sbjct: 1 QEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTT 60
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
IK+ TLNP +NE+ FE P +++Q + + V DYD+ ++D+IG+VF+
Sbjct: 61 IKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 109
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
+K G++ SL Y P+ LT+ +L+A+NLK D+ G SDPYVK+ L KR++K+KT I
Sbjct: 1 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 60
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
K LNP +NESFSF VP+E+I++ + V V+D+D IG+N+ IG++ + G N +GA E +
Sbjct: 61 KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-GYNSTGA-ELR 118
Query: 349 HWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
HW DM+ PR+ I QWH L+ + E+ L
Sbjct: 119 HWSDMLANPRRPIAQWHTLQVEEEVDAML 147
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKI 157
E +G I FSL Y L + ++ AK L D+ G SDPYVK+ L+ + + + +T I
Sbjct: 1 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 60
Query: 158 KRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
K+ TLNP +NE+ FE P +++Q + + V DYD+ ++D+IG+VF+
Sbjct: 61 KKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 108
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
+K G++ SL Y P+ LT+ +L+A+NLK D+ G SDPYVK+ L KR++K+KT I
Sbjct: 9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 68
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
K LNP +NESFSF VP+E+I++ + V V+D+D IG+N+ IG++ + G N +GA E +
Sbjct: 69 KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-GYNSTGA-ELR 126
Query: 349 HWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
HW DM+ PR+ I QWH L+ + E+ L
Sbjct: 127 HWSDMLANPRRPIAQWHTLQVEEEVDAML 155
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKI 157
E +G I FSL Y L + ++ AK L D+ G SDPYVK+ L+ + + + +T I
Sbjct: 9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 68
Query: 158 KRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
K+ TLNP +NE+ FE P +++Q + + V DYD+ ++D+IG+VF+
Sbjct: 69 KKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R
Sbjct: 1 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR 60
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
+TLNP +NE F+ P +L + L + V+D+DRFS+ D IGE +P+ VD
Sbjct: 61 KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 119
Query: 220 WKALKPPAK 228
W+ L+ K
Sbjct: 120 WRDLQSAEK 128
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
+K G+L SL Y N+ L + +++A L A D+ G SDPYVKV+L +K+ K +T++
Sbjct: 1 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKV 58
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
+ LNPVFNE F+F VP+ ++ +L + V DFD ++++IG + T+
Sbjct: 59 HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 118
Query: 349 HWQDM 353
W+D+
Sbjct: 119 EWRDL 123
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R
Sbjct: 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR 77
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
+TLNP +NE F+ P +L + L + V+D+DRFS+ D IGE +P+ VD
Sbjct: 78 KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
Query: 220 WKALK 224
W+ L+
Sbjct: 137 WRDLQ 141
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
+K G+L SL Y N+ L + +++A L A D+ G SDPYVKV+L +K+ K +T++
Sbjct: 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKV 75
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
+ LNPVFNE F+F VP+ ++ +L + V DFD ++++IG + T+
Sbjct: 76 HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 135
Query: 349 HWQDM 353
W+D+
Sbjct: 136 EWRDL 140
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R
Sbjct: 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR 77
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
+TLNP +NE F+ P +L + L + V+D+DRFS+ D IGE +P+ VD
Sbjct: 78 KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
Query: 220 WKALK 224
W+ L+
Sbjct: 137 WRDLQ 141
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
+K G+L SL Y N+ L + +++A L A D+ G SDPYVKV+L +K+ K +T++
Sbjct: 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKV 75
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
+ LNPVFNE F+F VP+ ++ +L + V DFD ++++IG + T+
Sbjct: 76 HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 135
Query: 349 HWQDM 353
W+D+
Sbjct: 136 EWRDL 140
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRT 161
+G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R+T
Sbjct: 28 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT 87
Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
LNP +NE F+ P +L + L + V+D+DRFS+ D IGE +P+ VD W+
Sbjct: 88 LNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 146
Query: 222 ALK 224
L+
Sbjct: 147 DLQ 149
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
G+L SL Y N+ L + +++A L A D+ G SDPYVKV+L +K+ K +T++ +
Sbjct: 28 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHR 85
Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW 350
LNPVFNE F+F VP+ ++ +L + V DFD ++++IG + T+ W
Sbjct: 86 KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW 145
Query: 351 QDM 353
+D+
Sbjct: 146 RDL 148
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 118 bits (295), Expect = 9e-27, Method: Composition-based stats.
Identities = 52/112 (46%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 105 IHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKRRTLN 163
+ FSLEY+F+ ++ + A+ LPA D S TSDPY+K+ +LP+KKH+++T++ R+TL+
Sbjct: 11 LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLD 70
Query: 164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE 215
P ++ET F G P ++Q LH + +DRFSRDD IGEV +PL ++LSE
Sbjct: 71 PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 234 LLTSLCYHPSNSVLTITLLKARNLKAKDING-KSDPYVKVWLQFGEKRIEKRKTQIFKCN 292
L SL Y+ + + +AR L A D SDPY+K+ + EK+ K KT++ +
Sbjct: 11 LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI-LPEKK-HKVKTRVLRKT 68
Query: 293 LNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
L+P F+E+F+F +P+ +I+E +L+ ++ FD R+++IG +L+
Sbjct: 69 LDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLI 113
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPA--------KDMSGTSDPYVKVALLPDKKHR 152
+G +HFS +YD ++ L +RVI A++LP +DM+ S+PYVK+ LLPD+K+
Sbjct: 11 QLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMA-HSNPYVKICLLPDQKNS 69
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
+T +KR+T P + E FE P + Q R L L V D+D+FSR IG+V +PLC+VD
Sbjct: 70 KQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVD 128
Query: 213 LSEKPTFWKALKP 225
L + +WKAL P
Sbjct: 129 LVKGGHWWKALIP 141
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 228 KDKCGELLTSLCYHPSNSVLTITLLKARNL-------KAKDINGKSDPYVKVWLQFGEKR 280
K + G L S Y ++ LT+ +++AR+L ++ S+PYVK+ L +K
Sbjct: 9 KYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKN 68
Query: 281 IE----KRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
+ KRKTQ PVF E ++F +P+ + + +L + V+DFD R+ +IG++
Sbjct: 69 SKQTGVKRKTQ------KPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKV 120
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP--DKKHR 152
+++ + +G + FSL YD DNS L +I AK L D +G +DPYVK+ LLP K ++
Sbjct: 8 DSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNK 67
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
L TK R T NP WNETL + G + +Q + L + V D D+F ++ IGE L ++
Sbjct: 68 LRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127
Query: 213 LSEKPTF 219
+++ F
Sbjct: 128 ANQRKNF 134
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
G L SL Y NS L T+++A+ LK D NG +DPYVK+ L G + K +T+ +
Sbjct: 16 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 292 NLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIG 332
NPV+NE+ ++ + E ++ +L + V D D G NE IG
Sbjct: 76 TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIG 117
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP--DKKHR 152
+++ + +G + FSL YD DNS L +I AK L D +G +DPYVK+ LLP K ++
Sbjct: 6 DSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNK 65
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
L TK R T NP WNETL + G + +Q + L + V D D+F ++ IGE L ++
Sbjct: 66 LRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 125
Query: 213 LSEKPTF 219
+++ F
Sbjct: 126 ANQRKNF 132
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
G L SL Y NS L T+++A+ LK D NG +DPYVK+ L G + K +T+ +
Sbjct: 14 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 292 NLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIG 332
NPV+NE+ ++ + E ++ +L + V D D G NE IG
Sbjct: 74 TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIG 115
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 13/133 (9%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK-----------KH 151
G+I + YD N LI+ ++ A+ L +D +G SDP+VKV LLP + ++
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
+ TK +++LNP WN+T+ ++ +++L + L + V+DYDRFS +D +GEV + L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 212 DLSEKPTFWKALK 224
+ W LK
Sbjct: 125 SHLDNTPRWYPLK 137
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI--------- 281
GE+ + Y N L I +L+ARNL +D NG SDP+VKV+L G ++
Sbjct: 6 TGEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 282 EKRKTQIFKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKN 340
KR+T+ + +LNP +N++ + ++ E++ + +L V V D+D N+ +G +L+ +
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Query: 341 GSGASETKHW 350
S T W
Sbjct: 124 TSHLDNTPRW 133
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
G++L SL Y L + +++ +L A D NG SDP+VK+WL+ + K KTQI K
Sbjct: 24 GKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKK 83
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
LNP FNE F +++ + + SL++ V D+D N+ IG L G + G KHW
Sbjct: 84 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKG-ERLKHWY 141
Query: 352 DMITKPRQTIVQWHRLKPDHEMQT 375
+ + + I +WH+L+ ++ + +
Sbjct: 142 ECLKNKDKKIERWHQLQNENHVSS 165
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKI 157
E G+I SL Y LI+ +I L A D +G SDP+VK+ L PD KK + +T+I
Sbjct: 21 EERGKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQI 80
Query: 158 KRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
K++TLNP +NE +++ L + L + V+DYD +D IG CQ+ +S K
Sbjct: 81 KKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGG-----CQLGISAK 133
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 87.0 bits (214), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
G++L SL Y L + +++ +L A D NG SDP+VK+WL+ + K KTQI K
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
LNP FNE F +++ + + SL++ V D+D N+ IG L G + G KHW
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKG-ERLKHWY 119
Query: 352 DMITKPRQTIVQWHRLKPDH 371
+ + + I +WH+L+ ++
Sbjct: 120 ECLKNKDKKIERWHQLQNEN 139
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKIKRR 160
G+I SL Y LI+ +I L A D +G SDP+VK+ L PD KK + +T+IK++
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
TLNP +NE +++ L + L + V+DYD +D IG CQ+ +S K
Sbjct: 62 TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGG-----CQLGISAK 111
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
G++L SL Y L + +++ +L A D NG SDP+VK+WL+ + K KTQI K
Sbjct: 24 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 83
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
LNP FNE F +++ + + SL++ V D+D N+ IG L G + G KHW
Sbjct: 84 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKG-ERLKHWY 141
Query: 352 DMITKPRQTIVQWHRLKPDHEMQT 375
+ + + I +WH+L+ ++ + +
Sbjct: 142 ECLKNKDKKIERWHQLQNENHVSS 165
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKI 157
E G+I SL Y LI+ +I L A D +G SDP+VK+ L PD KK + +T+I
Sbjct: 21 EERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQI 80
Query: 158 KRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
K++TLNP +NE +++ L + L + V+DYD +D IG CQ+ +S K
Sbjct: 81 KKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGG-----CQLGISAK 133
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 10/123 (8%)
Query: 101 NVGQIHFSLEYDFDNSTLI-LRVISAKELPAKDMSGTSDPYVKVALLPDKKHR----LET 155
+G+ + L D S ++ ++V+S +L KD+ G SDPYVK++L ++R ++T
Sbjct: 5 GLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQT 64
Query: 156 KIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE 215
K ++TLNP+WNE YF P + L VFD +R +RDD +G+V +PL + +E
Sbjct: 65 KTIKKTLNPKWNEEFYFRVNP----SNHRLLFEVFDENRLTRDDFLGQVDVPLSHLP-TE 119
Query: 216 KPT 218
PT
Sbjct: 120 DPT 122
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 231 CGELLTSLCYHPSNS-VLTITLLKARNLKAKDINGKSDPYVKVWLQFGE--KRIEKRKTQ 287
GE + L S +L + ++ +L KDI G SDPYVK+ L + + + +T+
Sbjct: 6 LGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTK 65
Query: 288 IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
K LNP +NE F F V R L V D + + R++ +G++
Sbjct: 66 TIKKTLNPKWNEEFYFRVNPSNHR---LLFEVFDENRLTRDDFLGQV 109
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRR 160
GQ+ L +D LI+ ++ AK+LP+++ +PYVK+ LPD+ K++ TK ++
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDS--IGEVFLPLCQVDLSEKPT 218
TL P+WN+T + ++ + R+L + ++D R ++S +GE+ + L L ++P
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
Query: 219 FWK 221
++K
Sbjct: 125 WYK 127
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
G+L L + L +T+L A++L +++ +PYVK++ KR+T+ K
Sbjct: 4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK 63
Query: 291 CNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGASET 347
L P +N++F ++ V + RE L + + D + +E +G IL+ + E
Sbjct: 64 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP 123
Query: 348 KHW 350
HW
Sbjct: 124 -HW 125
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Query: 107 FSLEYDFDNSTLI-LRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL---ETKIKRRTL 162
F L D +NS ++ +RVI+ L KD+ G SDPYV+V L L +TK +++L
Sbjct: 10 FGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSL 69
Query: 163 NPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
NP+WNE + F P Q L VFD +R +RDD +G+V +PL
Sbjct: 70 NPKWNEEILFRVHP----QQHRLLFEVFDENRLTRDDFLGQVDVPL 111
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 231 CGELLTSLCYHPSNS-VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI-EKRKTQI 288
C + L NS ++ + ++ L KDI G SDPYV+V L + +T+
Sbjct: 5 CAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKT 64
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
K +LNP +NE F V ++ R L V D + + R++ +G++
Sbjct: 65 IKKSLNPKWNEEILFRVHPQQHR---LLFEVFDENRLTRDDFLGQV 107
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKIKRR 160
G + S+ Y N TL + V+ K+L +D +PYVK LLPD K + +TKI R+
Sbjct: 9 GAVKLSVSYR--NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
T NP +NE L + G+ + L+ R L L V + + +G + LPL +LS++ W
Sbjct: 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKW 125
Query: 221 KAL 223
L
Sbjct: 126 YQL 128
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
G + S+ Y N L I ++ ++L +D +PYVK +L + KRKT+I +
Sbjct: 8 SGAVKLSVSYR--NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISR 64
Query: 291 CNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKH 349
NP FNE ++ E +R+ L + V+ +++ N +G I L K+ + + ET
Sbjct: 65 KTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVK 124
Query: 350 WQDM 353
W +
Sbjct: 125 WYQL 128
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK 156
+E G+I+ E + L + V AK L D +G SDPYVK+ L+PD K+ + +TK
Sbjct: 1 TEKRGRIYLKAE--VTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 58
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
R TLNP+WNE+ F+ P K R L + ++D+DR +R+D +G + + ++
Sbjct: 59 TIRSTLNPQWNESFTFKLKPSDK--DRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFS 302
++ L +T+ A+NL D NG SDPYVK+ L K K+KT+ + LNP +NESF+
Sbjct: 14 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 73
Query: 303 FNV-PWEKIRECSLNVMVMDFDNIGRNELIGRI 334
F + P +K R L+V + D+D RN+ +G +
Sbjct: 74 FKLKPSDKDRR--LSVEIWDWDRTTRNDFMGSL 104
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK 156
+E G+I+ E + L + V AK L D +G SDPYVK+ L+PD K+ + +TK
Sbjct: 2 TEKRGRIYLKAE--VTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 59
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
R TLNP+WNE+ F+ P K R L + ++D+DR +R+D +G + + ++
Sbjct: 60 TIRSTLNPQWNESFTFKLKPSDK--DRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFS 302
++ L +T+ A+NL D NG SDPYVK+ L K K+KT+ + LNP +NESF+
Sbjct: 15 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 74
Query: 303 FNV-PWEKIRECSLNVMVMDFDNIGRNELIGRI 334
F + P +K R L+V + D+D RN+ +G +
Sbjct: 75 FKLKPSDKDRR--LSVEIWDWDRTTRNDFMGSL 105
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELP-AKDMSGTSDPYVKVALLPDK--KHRLETKIK 158
G+I FSL+Y+ +L++ V +L A + S+PYVK LLPDK + + +T IK
Sbjct: 9 TGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68
Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
R T+NP ++ETL +E P L R L V+ + RF R+ +GE + + L +K
Sbjct: 69 RDTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKK 125
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLK-AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
G + SL Y L + + + L A + +S+PYVK +L + R KRKT I +
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
+NP+++E+ + +P + + +L V GRN +G
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLG 111
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Query: 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRT 161
Q+ L +D LI+ ++ AK+LP+++ +PYVK+ LPD+ K++ TK ++T
Sbjct: 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDS--IGEVFLPLCQVDLSEKPTF 219
L P+WN+T + ++ + R+L + ++D R ++S +GE+ + L L ++P +
Sbjct: 69 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHW 128
Query: 220 WK 221
+K
Sbjct: 129 YK 130
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 233 ELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCN 292
+L L + L +T+L A++L +++ +PYVK++ KR+T+ K
Sbjct: 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 293 LNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGASETKH 349
L P +N++F ++ V + RE L + + D + +E +G IL+ + E H
Sbjct: 69 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP-H 127
Query: 350 WQDMIT 355
W + T
Sbjct: 128 WYKLQT 133
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK 156
+E G+I+ E + L + V AK L D +G SDPYVK+ L+PD K+ + +TK
Sbjct: 3 TEKRGRIYLKAE--VADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTK 60
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
R TLNP+WNE+ F+ P K R L + ++D+DR +R+D G + + ++
Sbjct: 61 TIRSTLNPQWNESFTFKLKPSDK--DRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFS 302
++ L +T+ A+NL D NG SDPYVK+ L K K+KT+ + LNP +NESF+
Sbjct: 16 ADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 75
Query: 303 FNV-PWEKIRECSLNVMVMDFDNIGRNELIGRI 334
F + P +K R L+V + D+D RN+ G +
Sbjct: 76 FKLKPSDKDRR--LSVEIWDWDRTTRNDFXGSL 106
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 242 PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESF 301
P+ + +T+ +ARNL D NG SDPYVK+ L + + K+KT+ K LNPV+NE+F
Sbjct: 17 PTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETF 76
Query: 302 SFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
FN+ + E L+V V D+D RN+ +G
Sbjct: 77 VFNLKPGDV-ERRLSVEVWDWDRTSRNDFMG 106
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 125 AKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFPIQKLQS 182
A+ L D +G SDPYVK+ L+PD ++ + +T+ + TLNP WNET F P
Sbjct: 29 ARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGD--VE 86
Query: 183 RVLHLHVFDYDRFSRDDSIG 202
R L + V+D+DR SR+D +G
Sbjct: 87 RRLSVEVWDWDRTSRNDFMG 106
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HR 152
T+ +E G+I+ ++ D LI+ V AK L D +G SDPYVK+ L+PD K +
Sbjct: 153 GTDHTERRGRIY--IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESK 210
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEV 204
+TK + +LNP WNET F+ + + R L + ++D+D SR+D +G +
Sbjct: 211 QKTKTIKSSLNPEWNETFRFQ--LKESDKDRRLSVEIWDWDLTSRNDFMGSL 260
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 241 HPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNES 300
H VL + + A+NL D NG SDPYVK+ L K K+KT+ K +LNP +NE+
Sbjct: 168 HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNET 227
Query: 301 FSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
F F + E ++ L+V + D+D RN+ +G +
Sbjct: 228 FRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSL 260
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 241 HPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNES 300
H VL + + A+NL D NG SDPYVK+ L K K+KT+ KC+LNP +NE+
Sbjct: 27 HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET 86
Query: 301 FSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
F F + E ++ L+V + D+D RN+ +G +
Sbjct: 87 FRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSL 119
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKI 157
E G+I+ ++ D LI+ V AK L D +G SDPYVK+ L+PD K + +TK
Sbjct: 17 ERRGRIY--IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKT 74
Query: 158 KRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
+ +LNP WNET F+ K R L + ++D+D SR+D +G + + ++
Sbjct: 75 IKCSLNPEWNETFRFQLKESDK--DRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL---ETKIKRRTLNPRWNETL 170
D + ++VI+ L KD+ G SDPYV+V L L +TK +++LNP+WNE +
Sbjct: 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEI 65
Query: 171 YFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS----EKP-TFWKALKP 225
F P Q + VFD +R +RDD +G+V +PL + E+P TF +
Sbjct: 66 LFRVLP----QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121
Query: 226 PAKDKC---GELLTSLCYHPSNS 245
P K G L + Y P N
Sbjct: 122 PRSHKSRVKGYLRLKMTYLPKNG 144
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI-EKRKTQIFKCNLNPVFNESFSFN 304
V+ + ++ L KDI G SDPYV+V L I +T+ K +LNP +NE F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
V ++ R + V D + + R++ +G++
Sbjct: 69 VLPQRHR---ILFEVFDENRLTRDDFLGQV 95
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
G++ ++ + + L + + RNL A +G SDPYV+++L ++R +RKT + K
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNE--LIGRILLAGKNGSGASETKH 349
LNPVF++SF F+V +++ +L+V V + + L+G++L+A + A
Sbjct: 70 TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129
Query: 350 WQDM 353
W D+
Sbjct: 130 WYDL 133
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKR 159
+GQI ++ + + LI+ V + + L A G SDPYV++ LLPDK+ R +T + +
Sbjct: 10 LGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSK 68
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDS--IGEVFLPLCQVDLSEKP 217
+TLNP ++++ F + ++Q R L + V + F D +G+V + L +L++
Sbjct: 69 KTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGW 127
Query: 218 TFWKAL 223
T W L
Sbjct: 128 TQWYDL 133
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
D L ++V+ A +L A D SG SDP+ + L D RL+T + LNP WN+
Sbjct: 11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGND---RLQTHTVYKNLNPEWNKVF--- 64
Query: 174 GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
FPI+ + VL + VFD D D +G+V +PL +
Sbjct: 65 TFPIKDIHD-VLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
+L + +LKA +L A D +GKSDP+ L+ G R++ T NLNP +N+ F+F
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPF--CLLELGNDRLQ---THTVYKNLNPEWNKVFTF-- 66
Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRI---LLAGKNG 341
P + I + L V V D D + +G++ LL+ ++G
Sbjct: 67 PIKDIHDV-LEVTVFDEDGDKPPDFLGKVAIPLLSIRDG 104
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
L++ VI A EL A +G S+PY ++++ T+ + TLNP+WN + F I
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISM---GSQSYTTRTIQDTLNPKWN---FNCQFFI 442
Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
+ L VL L +FD D+FS DD +G +P+ ++
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKI 476
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
L + +++A LKA NGKS+PY ++ + G + R Q LNP +N + F +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISM--GSQSYTTRTIQD---TLNPKWNFNCQFFI- 442
Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGR 333
+ + + L + + D D ++ +GR
Sbjct: 443 -KDLYQDVLCLTLFDRDQFSPDDFLGR 468
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 18/83 (21%)
Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
++IT++ A+ L+AKD G SDPYV V Q G+ K++T+ NLNPV+ E+F F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTV--QVGK---TKKRTKTIYGNLNPVWEENFHF--- 70
Query: 307 WEKIREC-----SLNVMVMDFDN 324
EC + V V+D D+
Sbjct: 71 -----ECHNSSDRIKVRVLDEDD 88
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 120 LRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK 179
+ V+ A+ L AKD +G+SDPYV V + KK TK LNP W E +FE
Sbjct: 21 ITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKR---TKTIYGNLNPVWEENFHFECHN--- 74
Query: 180 LQSRVLHLHVFDYD---------RFSR--DDSIGEVFLPL 208
S + + V D D RF R DD +G+ + +
Sbjct: 75 -SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV 113
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 118 LILRVISAKELPAKDMS-GTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEG 174
L + VI A+ L K S T PYVKV LL + + +T+I R+TL+P + ++L F+
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE 91
Query: 175 FPIQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227
P Q +VL + V+ DY R G + L ++DLS W L PP+
Sbjct: 92 SP----QGKVLQVIVWGDYGRXDHKCFXGVAQILLEELDLSSXVIGWYKLFPPS 141
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 247 LTITLLKARNLKAKDINGKSD-PYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
L + +++AR+L K + + PYVKV+L I K+KT+I + L+P++ +S F+
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 115 NSTLILRVISAKELPAKDMSGTSDPYVKVAL-LPDKKHRLETKIKRRTLNPRWNETLYF- 172
+ TL + ++SAK L D DPYV++ D+K + + P WNET F
Sbjct: 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT---TPEWNETFIFT 65
Query: 173 --EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL--CQVDLSEKPTFWKALKPPAK 228
EG + L +FD D + DD++GE +PL V+ S PT + +K +
Sbjct: 66 VSEG-------TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD--E 116
Query: 229 DKCGELLTSLCYHPS 243
+ GE+ +L + PS
Sbjct: 117 EYKGEIWVALSFKPS 131
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 116 STLILRVISAKELPAKDMSGTSDPYVK--VALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
+ ++LR + DM T DPYV+ ++ PD + R T+ +NP WNET FE
Sbjct: 6 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKR--TRHFNNDINPVWNET--FE 61
Query: 174 GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
F + Q VL + + D + + D+++G + + + EK
Sbjct: 62 -FILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEK 102
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 247 LTITLLKARNLKAK---DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSF 303
T+ +L+A + D+ DPYV++++ +++T+ F ++NPV+NE+F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDS--RKRTRHFNNDINPVWNETFEF 62
Query: 304 NVPWEKIRECSLNVMVMDFDNIGRNELIG 332
+ + +E L + +MD N +E +G
Sbjct: 63 IL--DPNQENVLEITLMD-ANYVMDETLG 88
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 110 EYDFDNSTLILRVISAKELPAKDMSGTSDPYVK--VALLPDKKHRLETKIKRRTLNPRWN 167
+Y + ++LR + DM T DPYV+ ++ PD + R T+ +NP WN
Sbjct: 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKR--TRHFNNDINPVWN 72
Query: 168 ETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
ET FE F + Q VL + + D + + D+++G + + + EK
Sbjct: 73 ET--FE-FILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEK 117
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 241 HPSNSVLTITLLKARNLKAK---DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVF 297
H + T+ +L+A + D+ DPYV++++ +++T+ F ++NPV+
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVW 71
Query: 298 NESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
NE+F F + + +E L + +MD N +E +G
Sbjct: 72 NETFEFIL--DPNQENVLEITLMD-ANYVMDETLG 103
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 106 HFSLEYDFDN--STLILRVISAKELPAKDMSGTSDPYVK--VALLPDKKHRLETKIKRRT 161
H +E+ + + + ++LR + DM T DPYV+ ++ PD + R T+
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKR--TRHFNND 66
Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
+NP WNET FE F + Q VL + + D + + D+++G + + + EK
Sbjct: 67 INPVWNET--FE-FILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEK 117
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 238 LCYHPSNSVLTITLLKARNLKAK---DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLN 294
+ H + T+ +L+A + D+ DPYV++++ +++T+ F ++N
Sbjct: 11 IVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDS--RKRTRHFNNDIN 68
Query: 295 PVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
PV+NE+F F + + +E L + +MD N +E +G
Sbjct: 69 PVWNETFEFIL--DPNQENVLEITLMD-ANYVMDETLG 103
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK---KHRLETK 156
+ GQ+ S+ D + L+L +I K L +K GT DPYVK++L+P+ +H+ +T+
Sbjct: 13 QGAGQLRLSI--DAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQ-KTQ 68
Query: 157 IKRRTLNPRWNETLYFEGFPIQKL--QSRVL 185
+P ++E + FP+Q+ Q R+L
Sbjct: 69 TVPDCRDPAFHEHFF---FPVQEEDDQKRLL 96
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSF 303
+ VL + +++ + L +K G DPYVK+ L + R+ +KTQ +P F+E F F
Sbjct: 26 DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84
Query: 304 NVPWE 308
V E
Sbjct: 85 PVQEE 89
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 11/104 (10%)
Query: 243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFS 302
S+ +L + + A N+ K GK DP V V + +K+ +K + LNPV+NE
Sbjct: 5 SSGMLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNE-----LNPVWNEILE 58
Query: 303 FN---VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343
F+ +P + SL ++V DF+ IG+N+LIG +A K+ +G
Sbjct: 59 FDLRGIPLD--FSSSLGIIVKDFETIGQNKLIGTATVALKDLTG 100
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 115 NSTLILRVI--SAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYF 172
S+ +LRVI SA +P K G DP V V +KK + LNP WNE L F
Sbjct: 4 GSSGMLRVIVESASNIP-KTKFGKPDPIVSVIFKDEKKKTKKVD---NELNPVWNEILEF 59
Query: 173 E--GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
+ G P+ S L + V D++ ++ IG + L
Sbjct: 60 DLRGIPLD--FSSSLGIIVKDFETIGQNKLIGTATVAL 95
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 118 LILRVISAKELPA--KDMSGTSDPYVKV---ALLPDKKHRLETKIKRRTLNPRWNETLYF 172
L +R+IS ++LP K+ + DP V V + D R I NPRW+ F
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 173 EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP 207
E + ++ V DYD S++D IG+ +P
Sbjct: 557 E---VTVPDLALVRFMVEDYDSSSKNDFIGQSTIP 588
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 118 LILRVISAKELPA--KDMSGTSDPYVKV---ALLPDKKHRLETKIKRRTLNPRWNETLYF 172
L +R+IS ++LP K+ + DP V V + D R I NPRW+ F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 173 EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP 207
E + ++ V DYD S++D IG+ +P
Sbjct: 559 E---VTVPDLALVRFMVEDYDSSSKNDFIGQSTIP 590
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 294 NPVFNESFSFNVPW--EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
N +F +VP+ E +++ SL + D + NEL L+ S K +
Sbjct: 2 NVLFTSVPQEDVPFYQEALKDLSLKIYTTDVSKVPENELKKAELI-----SVFVYDKLTE 56
Query: 352 DMITK-PRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLR 410
++++K PR ++ + DH + + G+ IP Y P S AE+ + ++
Sbjct: 57 ELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPES--VAEHTFAXILTLVK 114
Query: 411 KCNWNNVDEELLNFSQ 426
+ + LNFSQ
Sbjct: 115 RLKRIEDRVKKLNFSQ 130
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNE 168
L L V+ AK L KD DP+ KV ++ T + TL+P+WN+
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKV-VVDGSGQCHSTDTVKNTLDPKWNQ 54
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 120 LRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNE 168
L V+ AK L KD DP+ K+ ++ T + TL+P+WN+
Sbjct: 9 LTVLCAKNLAKKDFFRLPDPFAKI-VVDGSGQCHSTDTVKNTLDPKWNQ 56
>pdb|1WFM|A Chain A, The First C2 Domain Of Human Synaptotagmin Xiii
Length = 138
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLE--TKIKRRT 161
++H+ L+YD + L ++ E + G D YV+ ++ ++ +E T +K+R
Sbjct: 14 KLHYCLDYDCQKAELF---VTRLEAVTSNHDGGCDCYVQGSV-ANRTGSVEAQTALKKRQ 69
Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
L+ W E L ++L + L L + DRFSR GE+ L L + W
Sbjct: 70 LHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWG 128
Query: 222 ALK 224
LK
Sbjct: 129 ELK 131
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 121 RVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
R +SA+E+PA+++ Y++ AL K ++ KI L E + E
Sbjct: 106 RYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLE 158
>pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus
Length = 145
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 121 RVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
R +SA+E+PA+++ Y++ AL K ++ KI L E + E
Sbjct: 52 RYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLE 104
>pdb|1MEX|L Chain L, Antibody Catalysis Of A Bimolecular Cycloaddition Reaction
Length = 213
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 360 TIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDE 419
T V W + KP +T + S + +P S + + + NNV
Sbjct: 31 TNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTI----------NNVQS 80
Query: 420 ELLN--FSQSYNSTPHTTLGVSPAEL 443
E L F Q YNS P+T G + E+
Sbjct: 81 EDLAEYFCQQYNSYPYTFGGGTKLEI 106
>pdb|2Z0U|A Chain A, Crystal Structure Of C2 Domain Of Kibra Protein
pdb|2Z0U|B Chain B, Crystal Structure Of C2 Domain Of Kibra Protein
Length = 155
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 95 NTEPSENVG--QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHR 152
+++ SE VG +I +L+YD N + +I L A ++VA+LP +
Sbjct: 20 DSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSE-- 77
Query: 153 LETKIKRRTLNPRWNETLYF-EGFPIQK----LQSRVLHLHVFDYDRFSRDDSIGEVFLP 207
T RT ++TL F E F + L + L + V DR ++ +G +
Sbjct: 78 -STTCLFRTRPLDASDTLVFNEVFWVSXSYPALHQKTLRVDVCTTDRSHLEECLGGAQIS 136
Query: 208 LCQVDLS-EKPTFWKAL 223
L +V S E+ T W L
Sbjct: 137 LAEVCRSGERSTRWYNL 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,349,648
Number of Sequences: 62578
Number of extensions: 596274
Number of successful extensions: 1462
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 108
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)