Query psy15955
Match_columns 475
No_of_seqs 552 out of 3309
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 17:20:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 100.0 2.4E-45 5.1E-50 365.8 26.0 269 98-369 149-420 (421)
2 cd08407 C2B_Synaptotagmin-13 C 100.0 4.3E-28 9.4E-33 204.9 11.5 136 231-368 1-138 (138)
3 cd08692 C2B_Tac2-N C2 domain s 99.9 1.8E-27 3.9E-32 197.8 13.1 134 232-367 1-135 (135)
4 cd08406 C2B_Synaptotagmin-12 C 99.9 2.3E-27 4.9E-32 200.8 12.5 135 232-368 2-136 (136)
5 cd08409 C2B_Synaptotagmin-15 C 99.9 3.6E-26 7.8E-31 194.8 13.2 136 231-367 1-136 (137)
6 cd08677 C2A_Synaptotagmin-13 C 99.9 1E-25 2.2E-30 182.8 12.7 117 103-223 1-118 (118)
7 PLN02230 phosphoinositide phos 99.9 5.5E-26 1.2E-30 230.8 13.8 204 15-239 380-596 (598)
8 PLN02223 phosphoinositide phos 99.9 8E-26 1.7E-30 225.1 14.2 201 17-239 322-535 (537)
9 cd08677 C2A_Synaptotagmin-13 C 99.9 1.9E-25 4.2E-30 181.2 12.3 118 232-353 1-118 (118)
10 cd08408 C2B_Synaptotagmin-14_1 99.9 3.3E-25 7.2E-30 188.5 12.5 136 232-368 2-138 (138)
11 KOG0169|consensus 99.9 1.8E-25 3.9E-30 226.1 11.2 198 16-240 530-743 (746)
12 KOG1013|consensus 99.9 3.9E-26 8.4E-31 209.1 4.7 269 100-370 77-356 (362)
13 cd08393 C2A_SLP-1_2 C2 domain 99.9 1.2E-24 2.7E-29 182.4 13.1 122 102-224 1-125 (125)
14 PLN02952 phosphoinositide phos 99.9 9.1E-25 2E-29 222.4 14.2 204 15-239 381-595 (599)
15 cd08410 C2B_Synaptotagmin-17 C 99.9 1.3E-24 2.8E-29 184.9 12.5 135 232-367 1-135 (135)
16 cd08381 C2B_PI3K_class_II C2 d 99.9 2.5E-24 5.3E-29 179.6 13.1 118 103-223 2-121 (122)
17 cd08402 C2B_Synaptotagmin-1 C2 99.9 2.4E-24 5.2E-29 183.9 12.8 136 231-368 1-136 (136)
18 cd08404 C2B_Synaptotagmin-4 C2 99.9 2.9E-24 6.2E-29 183.4 13.1 136 231-368 1-136 (136)
19 cd08405 C2B_Synaptotagmin-7 C2 99.9 2E-24 4.4E-29 184.4 11.8 136 231-368 1-136 (136)
20 cd04029 C2A_SLP-4_5 C2 domain 99.9 5.8E-24 1.3E-28 178.2 14.1 121 103-224 2-125 (125)
21 cd08403 C2B_Synaptotagmin-3-5- 99.9 4.8E-24 1E-28 181.6 12.6 134 232-367 1-134 (134)
22 cd08389 C2A_Synaptotagmin-14_1 99.9 7.5E-24 1.6E-28 177.3 13.1 123 102-225 2-124 (124)
23 PLN02222 phosphoinositide phos 99.9 4.8E-24 1E-28 216.4 14.2 193 16-229 364-567 (581)
24 cd08388 C2A_Synaptotagmin-4-11 99.9 1.4E-23 3.1E-28 176.6 14.7 125 101-225 1-128 (128)
25 cd08392 C2A_SLP-3 C2 domain fi 99.9 1.1E-23 2.4E-28 176.7 13.5 122 102-224 1-128 (128)
26 cd08680 C2_Kibra C2 domain fou 99.9 7.7E-24 1.7E-28 176.0 12.3 119 104-223 2-124 (124)
27 cd08385 C2A_Synaptotagmin-1-5- 99.9 1.6E-23 3.6E-28 175.9 14.2 122 102-224 2-123 (124)
28 cd04028 C2B_RIM1alpha C2 domai 99.9 2.8E-23 6.2E-28 176.7 15.2 124 98-227 13-140 (146)
29 cd08387 C2A_Synaptotagmin-8 C2 99.9 2.4E-23 5.1E-28 174.9 14.1 122 102-224 2-123 (124)
30 cd08384 C2B_Rabphilin_Doc2 C2 99.9 1.2E-23 2.6E-28 179.0 11.7 133 233-367 1-133 (133)
31 cd08386 C2A_Synaptotagmin-7 C2 99.9 3.6E-23 7.7E-28 174.2 14.1 124 102-225 2-125 (125)
32 KOG2059|consensus 99.9 1.9E-23 4.1E-28 208.0 12.9 217 115-340 4-238 (800)
33 cd08393 C2A_SLP-1_2 C2 domain 99.9 3.6E-23 7.9E-28 173.5 12.6 122 231-352 1-123 (125)
34 cd08680 C2_Kibra C2 domain fou 99.9 9.4E-23 2E-27 169.5 12.4 120 233-352 2-123 (124)
35 PLN02228 Phosphoinositide phos 99.9 9.2E-23 2E-27 206.5 14.3 204 15-242 345-562 (567)
36 cd04030 C2C_KIAA1228 C2 domain 99.9 2.2E-22 4.7E-27 169.9 14.3 122 102-224 2-127 (127)
37 cd08390 C2A_Synaptotagmin-15-1 99.9 2E-22 4.4E-27 169.1 13.9 122 103-225 1-123 (123)
38 cd08381 C2B_PI3K_class_II C2 d 99.9 1.3E-22 2.8E-27 169.2 12.6 118 231-351 1-119 (122)
39 cd04029 C2A_SLP-4_5 C2 domain 99.9 1.3E-22 2.9E-27 169.9 12.7 120 231-350 1-121 (125)
40 cd00276 C2B_Synaptotagmin C2 d 99.9 1.6E-22 3.5E-27 172.4 13.2 134 232-367 1-134 (134)
41 cd08406 C2B_Synaptotagmin-12 C 99.9 8.5E-23 1.8E-27 172.8 11.0 123 102-227 1-125 (136)
42 cd08521 C2A_SLP C2 domain firs 99.9 2.2E-22 4.8E-27 168.9 13.4 120 103-223 1-123 (123)
43 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 1.4E-22 3.1E-27 177.1 12.6 137 231-367 1-161 (162)
44 cd08392 C2A_SLP-3 C2 domain fi 99.9 2E-22 4.2E-27 169.2 12.7 111 231-341 1-112 (128)
45 cd08407 C2B_Synaptotagmin-13 C 99.9 1.7E-22 3.8E-27 170.7 11.9 122 102-226 1-126 (138)
46 cd04028 C2B_RIM1alpha C2 domai 99.9 9.9E-22 2.1E-26 167.3 14.3 125 228-371 14-140 (146)
47 cd08685 C2_RGS-like C2 domain 99.9 7.8E-22 1.7E-26 163.5 12.5 116 103-223 1-119 (119)
48 cd04031 C2A_RIM1alpha C2 domai 99.9 1E-21 2.2E-26 165.3 13.3 122 102-224 2-125 (125)
49 cd04016 C2_Tollip C2 domain pr 99.9 1.4E-21 3.1E-26 161.4 13.0 117 116-240 2-121 (121)
50 cd08385 C2A_Synaptotagmin-1-5- 99.9 2E-21 4.3E-26 163.2 12.9 121 231-353 2-122 (124)
51 cd08404 C2B_Synaptotagmin-4 C2 99.9 1.3E-21 2.7E-26 167.0 11.6 125 102-229 1-127 (136)
52 cd08387 C2A_Synaptotagmin-8 C2 99.9 3.3E-21 7.1E-26 161.9 12.9 121 231-353 2-122 (124)
53 cd08395 C2C_Munc13 C2 domain t 99.9 2E-21 4.3E-26 160.1 11.2 108 117-226 1-113 (120)
54 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 4E-21 8.6E-26 168.0 13.2 124 102-225 1-138 (162)
55 cd08682 C2_Rab11-FIP_classI C2 99.9 2.9E-21 6.2E-26 162.6 11.8 117 118-238 1-125 (126)
56 cd04042 C2A_MCTP_PRT C2 domain 99.9 6.1E-21 1.3E-25 159.5 13.1 120 117-242 1-121 (121)
57 cd04030 C2C_KIAA1228 C2 domain 99.9 6.6E-21 1.4E-25 160.8 13.1 123 230-352 1-125 (127)
58 cd08408 C2B_Synaptotagmin-14_1 99.8 3.7E-21 8E-26 163.7 10.5 123 103-227 2-127 (138)
59 cd08409 C2B_Synaptotagmin-15 C 99.8 4.3E-21 9.4E-26 163.5 10.9 123 102-226 1-125 (137)
60 cd08521 C2A_SLP C2 domain firs 99.8 1.1E-20 2.3E-25 158.6 12.6 119 232-350 1-120 (123)
61 cd08405 C2B_Synaptotagmin-7 C2 99.8 6.8E-21 1.5E-25 162.6 10.9 123 102-227 1-125 (136)
62 cd08384 C2B_Rabphilin_Doc2 C2 99.8 8.4E-21 1.8E-25 161.4 11.3 122 104-228 1-124 (133)
63 cd08685 C2_RGS-like C2 domain 99.8 1.2E-20 2.6E-25 156.4 11.9 116 232-351 1-117 (119)
64 cd08388 C2A_Synaptotagmin-4-11 99.8 1.5E-20 3.1E-25 158.3 12.5 121 231-353 2-126 (128)
65 cd08402 C2B_Synaptotagmin-1 C2 99.8 9.2E-21 2E-25 161.8 11.3 122 102-226 1-124 (136)
66 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.4E-20 5.2E-25 160.8 13.7 124 118-247 2-138 (150)
67 cd08403 C2B_Synaptotagmin-3-5- 99.8 1.2E-20 2.6E-25 160.7 11.1 122 103-227 1-124 (134)
68 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.9E-20 4E-25 157.9 12.0 121 117-241 1-126 (127)
69 cd08389 C2A_Synaptotagmin-14_1 99.8 2E-20 4.4E-25 156.6 12.1 110 231-343 2-112 (124)
70 KOG1264|consensus 99.8 4.7E-21 1E-25 192.5 9.7 204 17-243 979-1191(1267)
71 cd08410 C2B_Synaptotagmin-17 C 99.8 1.4E-20 3.1E-25 160.0 10.5 123 103-228 1-126 (135)
72 cd04031 C2A_RIM1alpha C2 domai 99.8 3E-20 6.4E-25 156.4 12.0 110 231-340 2-112 (125)
73 cd04035 C2A_Rabphilin_Doc2 C2 99.8 9.1E-20 2E-24 152.8 13.8 121 102-223 1-123 (123)
74 cd04036 C2_cPLA2 C2 domain pre 99.8 5.1E-20 1.1E-24 153.4 12.1 116 118-240 2-117 (119)
75 cd08681 C2_fungal_Inn1p-like C 99.8 3.4E-20 7.3E-25 154.3 10.7 117 116-240 1-118 (118)
76 cd08376 C2B_MCTP_PRT C2 domain 99.8 8.1E-20 1.7E-24 151.6 12.9 114 118-241 2-115 (116)
77 cd08692 C2B_Tac2-N C2 domain s 99.8 4.5E-20 9.7E-25 153.6 11.2 120 104-226 2-124 (135)
78 cd08386 C2A_Synaptotagmin-7 C2 99.8 8.2E-20 1.8E-24 153.7 12.2 121 231-353 2-123 (125)
79 cd04009 C2B_Munc13-like C2 dom 99.8 1.1E-19 2.4E-24 154.3 12.9 113 101-214 1-119 (133)
80 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9E-20 1.9E-24 152.9 12.1 116 117-238 1-122 (123)
81 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.1E-19 2.4E-24 151.3 12.3 117 118-240 2-121 (121)
82 cd00276 C2B_Synaptotagmin C2 d 99.8 8E-20 1.7E-24 155.8 11.7 122 103-227 1-124 (134)
83 cd04010 C2B_RasA3 C2 domain se 99.8 7E-20 1.5E-24 156.9 11.0 109 117-227 1-124 (148)
84 cd08379 C2D_MCTP_PRT_plant C2 99.8 7.5E-20 1.6E-24 152.1 10.7 112 118-236 2-125 (126)
85 cd08390 C2A_Synaptotagmin-15-1 99.8 1.6E-19 3.4E-24 151.5 12.4 119 232-352 1-120 (123)
86 cd08678 C2_C21orf25-like C2 do 99.8 2.7E-19 5.9E-24 150.5 12.5 120 118-244 1-123 (126)
87 cd04024 C2A_Synaptotagmin-like 99.8 3.8E-19 8.2E-24 150.3 12.7 119 116-240 1-128 (128)
88 cd08378 C2B_MCTP_PRT_plant C2 99.8 2.5E-19 5.4E-24 149.2 11.2 112 118-240 2-119 (121)
89 cd08400 C2_Ras_p21A1 C2 domain 99.8 4.5E-19 9.7E-24 148.9 12.9 119 116-243 4-125 (126)
90 cd08375 C2_Intersectin C2 doma 99.8 3.5E-19 7.5E-24 151.2 11.9 118 114-240 13-135 (136)
91 cd04041 C2A_fungal C2 domain f 99.8 3.2E-19 7E-24 146.5 10.8 106 116-225 1-108 (111)
92 KOG1030|consensus 99.8 3.3E-19 7.1E-24 150.1 9.6 96 115-217 5-100 (168)
93 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 9.7E-19 2.1E-23 148.8 12.5 119 118-240 2-132 (133)
94 cd08395 C2C_Munc13 C2 domain t 99.8 7.3E-19 1.6E-23 144.9 10.9 97 246-343 1-100 (120)
95 cd04026 C2_PKC_alpha_gamma C2 99.8 1.8E-18 4E-23 146.6 13.2 121 102-227 1-123 (131)
96 cd08688 C2_KIAA0528-like C2 do 99.8 7.7E-19 1.7E-23 144.0 10.3 104 118-225 1-109 (110)
97 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.3E-18 2.9E-23 145.4 11.9 115 116-240 1-121 (121)
98 cd04044 C2A_Tricalbin-like C2 99.8 1.6E-18 3.5E-23 145.6 12.1 121 116-242 2-124 (124)
99 cd04017 C2D_Ferlin C2 domain f 99.8 2.4E-18 5.2E-23 146.5 13.0 122 117-242 2-133 (135)
100 cd04009 C2B_Munc13-like C2 dom 99.8 2.1E-18 4.7E-23 146.4 12.3 112 231-342 2-117 (133)
101 cd04015 C2_plant_PLD C2 domain 99.8 2.8E-18 6E-23 149.5 13.1 121 114-241 5-158 (158)
102 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 3E-18 6.4E-23 143.0 12.4 116 118-239 2-120 (121)
103 cd08373 C2A_Ferlin C2 domain f 99.8 2.7E-18 5.9E-23 144.7 11.6 118 122-245 2-120 (127)
104 cd08377 C2C_MCTP_PRT C2 domain 99.8 5.2E-18 1.1E-22 141.4 12.8 116 116-240 1-118 (119)
105 cd04035 C2A_Rabphilin_Doc2 C2 99.8 4.4E-18 9.4E-23 142.7 12.3 113 231-344 1-114 (123)
106 KOG0696|consensus 99.8 5.8E-19 1.3E-23 167.2 7.2 126 95-225 161-288 (683)
107 cd04043 C2_Munc13_fungal C2 do 99.8 8.1E-18 1.7E-22 141.7 12.7 118 117-242 2-122 (126)
108 cd08690 C2_Freud-1 C2 domain f 99.8 8.6E-18 1.9E-22 144.1 12.6 124 118-242 4-138 (155)
109 cd08382 C2_Smurf-like C2 domai 99.8 6.9E-18 1.5E-22 141.2 11.3 114 118-238 2-122 (123)
110 cd04050 C2B_Synaptotagmin-like 99.8 5.9E-18 1.3E-22 137.5 10.2 100 118-226 2-103 (105)
111 cd08682 C2_Rab11-FIP_classI C2 99.7 8.3E-18 1.8E-22 141.5 10.6 106 247-369 1-109 (126)
112 cd04010 C2B_RasA3 C2 domain se 99.7 1.1E-17 2.4E-22 143.4 11.1 96 246-343 1-109 (148)
113 cd04040 C2D_Tricalbin-like C2 99.7 1.8E-17 3.8E-22 137.3 11.9 114 118-236 1-114 (115)
114 cd04014 C2_PKC_epsilon C2 doma 99.7 2.1E-17 4.6E-22 140.2 12.5 116 115-242 3-130 (132)
115 cd04039 C2_PSD C2 domain prese 99.7 1.3E-17 2.8E-22 135.7 10.4 96 116-216 1-100 (108)
116 cd08394 C2A_Munc13 C2 domain f 99.7 1.6E-17 3.5E-22 136.2 10.8 106 116-233 2-109 (127)
117 KOG0696|consensus 99.7 2E-18 4.3E-23 163.6 6.2 123 229-355 166-288 (683)
118 cd04026 C2_PKC_alpha_gamma C2 99.7 2.3E-17 4.9E-22 139.9 12.1 120 231-354 1-120 (131)
119 cd04027 C2B_Munc13 C2 domain s 99.7 2.5E-17 5.3E-22 138.7 12.1 113 117-238 2-127 (127)
120 cd04051 C2_SRC2_like C2 domain 99.7 1.2E-17 2.5E-22 140.5 9.3 117 117-236 1-125 (125)
121 cd04046 C2_Calpain C2 domain p 99.7 5.2E-17 1.1E-21 136.5 12.8 117 116-242 3-123 (126)
122 KOG1028|consensus 99.7 1.5E-17 3.3E-22 166.4 10.9 120 103-225 285-406 (421)
123 cd04016 C2_Tollip C2 domain pr 99.7 5.9E-17 1.3E-21 133.9 12.3 101 245-354 2-104 (121)
124 cd04011 C2B_Ferlin C2 domain s 99.7 4.5E-17 9.7E-22 133.8 10.4 104 115-225 3-110 (111)
125 cd08675 C2B_RasGAP C2 domain s 99.7 6E-17 1.3E-21 137.8 11.1 109 118-227 1-122 (137)
126 cd08688 C2_KIAA0528-like C2 do 99.7 4.3E-17 9.4E-22 133.6 9.8 91 247-342 1-93 (110)
127 cd08676 C2A_Munc13-like C2 dom 99.7 5.5E-17 1.2E-21 139.5 9.8 102 114-223 26-153 (153)
128 cd04018 C2C_Ferlin C2 domain t 99.7 5.5E-17 1.2E-21 139.3 9.7 94 117-215 1-108 (151)
129 cd08379 C2D_MCTP_PRT_plant C2 99.7 9.5E-17 2.1E-21 133.5 10.7 101 246-354 1-110 (126)
130 COG5038 Ca2+-dependent lipid-b 99.7 5.2E-16 1.1E-20 163.7 18.6 220 111-342 706-1131(1227)
131 cd04049 C2_putative_Elicitor-r 99.7 8.7E-17 1.9E-21 134.9 10.4 107 116-226 1-109 (124)
132 cd04048 C2A_Copine C2 domain f 99.7 1.8E-16 3.8E-21 132.2 11.2 102 121-225 5-114 (120)
133 COG5038 Ca2+-dependent lipid-b 99.7 6.6E-16 1.4E-20 162.9 18.0 217 114-343 434-802 (1227)
134 cd08691 C2_NEDL1-like C2 domai 99.7 3.2E-16 7E-21 132.5 12.6 116 117-238 2-136 (137)
135 cd04041 C2A_fungal C2 domain f 99.7 1.2E-16 2.6E-21 131.1 9.5 96 245-342 1-98 (111)
136 cd04032 C2_Perforin C2 domain 99.7 1.7E-16 3.7E-21 132.2 9.6 92 115-212 27-118 (127)
137 cd04045 C2C_Tricalbin-like C2 99.7 3.3E-16 7.1E-21 130.2 11.2 105 116-227 1-105 (120)
138 cd08383 C2A_RasGAP C2 domain ( 99.7 4.1E-16 8.9E-21 129.5 11.7 114 118-240 2-117 (117)
139 cd08376 C2B_MCTP_PRT C2 domain 99.7 4.2E-16 9E-21 129.2 11.7 91 246-343 1-91 (116)
140 cd04037 C2E_Ferlin C2 domain f 99.7 2.9E-16 6.2E-21 131.5 10.7 119 118-242 2-120 (124)
141 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 4.1E-16 8.9E-21 130.6 11.3 102 246-354 1-102 (123)
142 cd04022 C2A_MCTP_PRT_plant C2 99.7 3.2E-16 7E-21 132.0 10.0 92 246-342 1-94 (127)
143 KOG1265|consensus 99.7 6.5E-17 1.4E-21 164.6 6.5 183 18-227 616-807 (1189)
144 cd04036 C2_cPLA2 C2 domain pre 99.7 6.3E-16 1.4E-20 128.7 11.0 93 247-344 2-94 (119)
145 cd08681 C2_fungal_Inn1p-like C 99.7 5.5E-16 1.2E-20 128.9 10.2 102 245-354 1-103 (118)
146 cd04038 C2_ArfGAP C2 domain pr 99.7 5.1E-16 1.1E-20 132.7 10.1 93 116-216 2-94 (145)
147 cd04039 C2_PSD C2 domain prese 99.7 5.7E-16 1.2E-20 126.0 9.9 91 245-341 1-95 (108)
148 cd04042 C2A_MCTP_PRT C2 domain 99.7 8E-16 1.7E-20 128.5 11.0 101 246-353 1-101 (121)
149 cd08690 C2_Freud-1 C2 domain f 99.7 1.4E-15 3E-20 130.5 12.6 133 247-398 4-145 (155)
150 cd04013 C2_SynGAP_like C2 doma 99.7 1E-15 2.2E-20 129.9 11.7 117 115-242 10-140 (146)
151 PLN03008 Phospholipase D delta 99.6 1.8E-15 3.8E-20 157.4 14.1 125 113-244 11-180 (868)
152 cd04050 C2B_Synaptotagmin-like 99.6 2E-15 4.2E-20 122.7 11.5 103 246-370 1-103 (105)
153 KOG1030|consensus 99.6 7.7E-16 1.7E-20 129.8 9.3 92 244-343 5-96 (168)
154 cd04021 C2_E3_ubiquitin_ligase 99.6 1.6E-15 3.5E-20 127.2 11.3 115 116-238 2-124 (125)
155 cd04019 C2C_MCTP_PRT_plant C2 99.6 2.3E-15 5.1E-20 129.7 12.1 108 246-370 1-109 (150)
156 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 1.4E-15 2.9E-20 126.7 10.0 90 247-343 2-92 (121)
157 cd04052 C2B_Tricalbin-like C2 99.6 9.8E-16 2.1E-20 125.7 9.0 101 133-242 9-110 (111)
158 cd00275 C2_PLC_like C2 domain 99.6 4.1E-15 8.9E-20 125.5 12.5 117 117-240 3-127 (128)
159 cd08375 C2_Intersectin C2 doma 99.6 4E-15 8.6E-20 126.4 12.4 96 240-342 10-105 (136)
160 cd08676 C2A_Munc13-like C2 dom 99.6 1.9E-15 4.2E-20 129.9 10.4 107 239-352 22-152 (153)
161 cd04018 C2C_Ferlin C2 domain t 99.6 2.2E-15 4.8E-20 129.4 10.4 92 246-343 1-106 (151)
162 cd04015 C2_plant_PLD C2 domain 99.6 2.5E-15 5.5E-20 130.9 10.3 106 245-358 7-142 (158)
163 cd04038 C2_ArfGAP C2 domain pr 99.6 5.3E-15 1.2E-19 126.4 11.9 114 245-369 2-115 (145)
164 cd04047 C2B_Copine C2 domain s 99.6 3.9E-15 8.4E-20 122.1 10.2 92 119-214 3-101 (110)
165 cd08675 C2B_RasGAP C2 domain s 99.6 3.8E-15 8.2E-20 126.7 10.5 95 247-343 1-108 (137)
166 cd04024 C2A_Synaptotagmin-like 99.6 4.3E-15 9.3E-20 125.4 10.5 91 245-342 1-93 (128)
167 cd08678 C2_C21orf25-like C2 do 99.6 3.8E-15 8.3E-20 125.2 9.3 96 247-350 1-96 (126)
168 KOG1327|consensus 99.6 1.5E-14 3.2E-19 143.5 14.7 264 129-398 3-301 (529)
169 cd08400 C2_Ras_p21A1 C2 domain 99.6 6.5E-15 1.4E-19 123.6 10.5 100 245-354 4-103 (126)
170 cd04011 C2B_Ferlin C2 domain s 99.6 5.9E-15 1.3E-19 121.2 9.7 92 242-342 1-94 (111)
171 cd08686 C2_ABR C2 domain in th 99.6 6E-15 1.3E-19 119.5 9.1 83 118-210 1-92 (118)
172 cd04045 C2C_Tricalbin-like C2 99.6 1.4E-14 3.1E-19 120.4 11.6 93 245-344 1-93 (120)
173 cd08391 C2A_C2C_Synaptotagmin_ 99.6 1.3E-14 2.8E-19 121.2 11.4 91 245-343 1-97 (121)
174 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1E-14 2.2E-19 121.7 10.6 86 247-339 2-87 (121)
175 cd04032 C2_Perforin C2 domain 99.6 1.1E-14 2.3E-19 121.5 10.5 91 243-340 26-116 (127)
176 cd04049 C2_putative_Elicitor-r 99.6 1.5E-14 3.3E-19 121.3 11.4 104 245-353 1-106 (124)
177 cd08378 C2B_MCTP_PRT_plant C2 99.6 1.3E-14 2.8E-19 120.8 10.7 85 246-342 1-85 (121)
178 cd04048 C2A_Copine C2 domain f 99.6 1.5E-14 3.2E-19 120.6 10.8 102 250-353 5-112 (120)
179 cd04037 C2E_Ferlin C2 domain f 99.6 1.5E-14 3.3E-19 121.0 10.9 102 246-355 1-102 (124)
180 cd08691 C2_NEDL1-like C2 domai 99.6 3E-14 6.4E-19 120.5 12.7 92 246-342 2-105 (137)
181 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1.5E-14 3.3E-19 122.9 11.0 94 246-342 1-96 (133)
182 cd08377 C2C_MCTP_PRT C2 domain 99.6 2.8E-14 6.2E-19 118.8 11.4 90 245-342 1-90 (119)
183 cd08382 C2_Smurf-like C2 domai 99.6 2E-14 4.3E-19 120.3 10.2 89 246-342 1-91 (123)
184 cd04043 C2_Munc13_fungal C2 do 99.6 2.8E-14 6.1E-19 120.0 11.1 91 246-340 2-92 (126)
185 cd08686 C2_ABR C2 domain in th 99.6 1.9E-14 4.2E-19 116.5 9.6 83 247-338 1-90 (118)
186 cd04017 C2D_Ferlin C2 domain f 99.5 4.4E-14 9.5E-19 120.2 11.5 108 246-369 2-117 (135)
187 cd08373 C2A_Ferlin C2 domain f 99.5 2.6E-14 5.7E-19 120.4 10.0 95 251-352 2-96 (127)
188 cd04014 C2_PKC_epsilon C2 doma 99.5 3.9E-14 8.4E-19 120.2 10.8 92 244-343 3-104 (132)
189 cd04040 C2D_Tricalbin-like C2 99.5 3.4E-14 7.4E-19 117.5 10.1 101 247-353 1-101 (115)
190 cd04027 C2B_Munc13 C2 domain s 99.5 6.1E-14 1.3E-18 118.0 11.5 88 246-341 2-100 (127)
191 cd04051 C2_SRC2_like C2 domain 99.5 5.3E-14 1.1E-18 118.2 9.2 94 246-343 1-97 (125)
192 cd04044 C2A_Tricalbin-like C2 99.5 8.8E-14 1.9E-18 116.7 10.4 96 245-346 2-98 (124)
193 cd04047 C2B_Copine C2 domain s 99.5 8.3E-14 1.8E-18 114.2 9.9 91 249-342 4-99 (110)
194 cd08394 C2A_Munc13 C2 domain f 99.5 1.4E-13 3E-18 113.1 10.8 101 245-370 2-102 (127)
195 PF00168 C2: C2 domain; Inter 99.5 1.3E-13 2.7E-18 107.2 9.7 85 118-205 1-85 (85)
196 cd04046 C2_Calpain C2 domain p 99.5 2.5E-13 5.4E-18 114.1 11.7 88 244-340 2-89 (126)
197 cd08374 C2F_Ferlin C2 domain s 99.5 2.4E-13 5.1E-18 113.4 10.2 97 118-215 2-125 (133)
198 cd08374 C2F_Ferlin C2 domain s 99.5 2.7E-13 5.8E-18 113.0 9.8 96 246-343 1-123 (133)
199 PLN03200 cellulose synthase-in 99.5 1.3E-13 2.9E-18 156.4 10.6 120 114-242 1978-2101(2102)
200 PF00168 C2: C2 domain; Inter 99.5 6.6E-13 1.4E-17 103.1 10.6 85 247-335 1-85 (85)
201 cd08383 C2A_RasGAP C2 domain ( 99.4 8.4E-13 1.8E-17 109.5 11.1 84 247-338 2-85 (117)
202 PLN03008 Phospholipase D delta 99.4 2.5E-13 5.4E-18 141.6 9.6 112 264-383 75-186 (868)
203 KOG1326|consensus 99.4 2.6E-13 5.6E-18 140.9 9.6 248 115-370 612-1004(1105)
204 cd04013 C2_SynGAP_like C2 doma 99.4 7.4E-13 1.6E-17 112.5 9.3 104 245-360 11-118 (146)
205 cd00275 C2_PLC_like C2 domain 99.4 1.9E-12 4.1E-17 109.2 11.6 95 245-342 2-100 (128)
206 cd04021 C2_E3_ubiquitin_ligase 99.4 2.2E-12 4.7E-17 108.1 9.3 89 245-342 2-90 (125)
207 KOG0905|consensus 99.3 1.5E-12 3.2E-17 136.8 6.9 126 97-224 1507-1634(1639)
208 smart00239 C2 Protein kinase C 99.3 2.1E-11 4.5E-16 97.5 10.6 96 118-216 2-97 (101)
209 KOG1011|consensus 99.3 4.2E-12 9.1E-17 126.0 7.0 116 115-239 294-422 (1283)
210 cd00030 C2 C2 domain. The C2 d 99.3 2.5E-11 5.3E-16 96.8 10.1 101 118-223 1-102 (102)
211 KOG1326|consensus 99.3 1.3E-12 2.8E-17 135.8 3.1 90 246-340 614-703 (1105)
212 KOG1328|consensus 99.3 3.4E-12 7.3E-17 128.2 5.1 110 102-212 933-1048(1103)
213 cd04052 C2B_Tricalbin-like C2 99.3 2.4E-11 5.3E-16 99.6 8.7 73 262-341 9-81 (111)
214 KOG0905|consensus 99.2 8.6E-12 1.9E-16 131.2 5.9 123 228-352 1509-1632(1639)
215 smart00239 C2 Protein kinase C 99.2 1.1E-10 2.3E-15 93.3 10.6 93 247-343 2-94 (101)
216 PLN02270 phospholipase D alpha 99.2 1.8E-10 3.9E-15 120.5 13.6 148 114-272 6-175 (808)
217 KOG2059|consensus 99.1 3.1E-11 6.7E-16 121.6 5.2 143 98-242 111-277 (800)
218 KOG1328|consensus 99.1 5.2E-11 1.1E-15 119.9 3.9 111 232-342 934-1048(1103)
219 PLN03200 cellulose synthase-in 99.1 1.8E-10 3.8E-15 131.6 8.4 102 244-353 1979-2080(2102)
220 KOG1013|consensus 99.1 2.5E-10 5.3E-15 105.8 7.1 109 99-208 216-326 (362)
221 cd00030 C2 C2 domain. The C2 d 99.1 9.5E-10 2.1E-14 87.5 9.7 90 247-342 1-90 (102)
222 KOG1011|consensus 99.1 2.1E-10 4.5E-15 114.2 6.4 101 245-355 295-406 (1283)
223 PLN02223 phosphoinositide phos 99.0 1.5E-09 3.3E-14 109.3 10.4 97 245-343 409-510 (537)
224 PLN02270 phospholipase D alpha 99.0 2.1E-09 4.6E-14 112.6 9.5 128 245-380 8-154 (808)
225 KOG1327|consensus 99.0 2E-09 4.4E-14 107.4 8.7 191 3-225 41-248 (529)
226 KOG1031|consensus 98.9 1.5E-09 3.3E-14 106.9 6.8 121 115-239 2-134 (1169)
227 PLN02230 phosphoinositide phos 98.9 7.1E-09 1.5E-13 106.6 10.2 97 244-342 468-570 (598)
228 PLN02952 phosphoinositide phos 98.9 1.1E-08 2.4E-13 105.4 10.7 98 244-343 469-572 (599)
229 PLN02222 phosphoinositide phos 98.8 1.7E-08 3.6E-13 103.7 10.6 97 244-342 451-553 (581)
230 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.5E-08 3.2E-13 79.4 7.5 84 118-212 1-87 (109)
231 smart00149 PLCYc Phospholipase 98.8 8.7E-10 1.9E-14 88.8 0.4 67 15-81 46-115 (115)
232 KOG0169|consensus 98.8 2E-08 4.3E-13 103.3 8.9 95 246-342 617-716 (746)
233 KOG1031|consensus 98.8 1.1E-08 2.5E-13 100.9 6.8 115 245-368 3-119 (1169)
234 KOG2060|consensus 98.7 1.2E-08 2.5E-13 96.5 5.7 122 100-227 255-381 (405)
235 PLN02228 Phosphoinositide phos 98.7 5E-08 1.1E-12 100.0 10.6 97 244-342 430-533 (567)
236 PF00387 PI-PLC-Y: Phosphatidy 98.7 1.2E-09 2.6E-14 88.8 -2.8 70 13-82 46-118 (118)
237 PLN02352 phospholipase D epsil 98.7 1.7E-07 3.6E-12 98.4 12.1 141 114-271 8-156 (758)
238 cd08684 C2A_Tac2-N C2 domain f 98.7 3.4E-08 7.4E-13 73.8 4.7 101 248-353 2-103 (103)
239 cd08684 C2A_Tac2-N C2 domain f 98.6 5.1E-08 1.1E-12 72.8 3.5 100 119-222 2-102 (103)
240 cd08683 C2_C2cd3 C2 domain fou 98.5 1.6E-07 3.5E-12 75.8 5.0 94 247-341 1-130 (143)
241 KOG1264|consensus 98.5 4.5E-07 9.7E-12 93.2 9.0 94 245-341 1065-1160(1267)
242 cd08689 C2_fungal_Pkc1p C2 dom 98.5 6.7E-07 1.5E-11 70.2 8.0 81 247-339 1-84 (109)
243 KOG2060|consensus 98.4 7.6E-07 1.7E-11 84.4 7.5 113 243-371 267-381 (405)
244 PLN02352 phospholipase D epsil 98.2 4.3E-06 9.3E-11 88.1 8.3 124 245-383 10-139 (758)
245 cd08683 C2_C2cd3 C2 domain fou 98.1 3.5E-06 7.6E-11 68.2 4.5 105 118-223 1-143 (143)
246 PLN02964 phosphatidylserine de 97.7 2.6E-05 5.7E-10 81.6 4.4 92 114-217 52-143 (644)
247 PHA02517 putative transposase 97.6 3.7E-05 7.9E-10 73.8 3.7 84 361-444 174-263 (277)
248 PF13683 rve_3: Integrase core 97.6 5.7E-06 1.2E-10 60.8 -1.6 61 380-440 1-67 (67)
249 KOG3837|consensus 97.4 4.9E-05 1.1E-09 73.1 1.5 134 107-241 358-503 (523)
250 PRK14702 insertion element IS2 97.3 0.00026 5.7E-09 67.1 4.3 87 359-445 155-247 (262)
251 cd08398 C2_PI3K_class_I_alpha 97.1 0.0045 9.8E-08 53.6 10.0 92 245-340 8-105 (158)
252 PRK09409 IS2 transposase TnpB; 97.1 0.00058 1.3E-08 66.1 4.5 88 359-446 194-287 (301)
253 cd08693 C2_PI3K_class_I_beta_d 97.0 0.0062 1.3E-07 53.7 10.0 94 245-340 8-119 (173)
254 cd08380 C2_PI3K_like C2 domain 97.0 0.0066 1.4E-07 52.8 9.6 95 246-341 9-107 (156)
255 cd08397 C2_PI3K_class_III C2 d 96.8 0.0066 1.4E-07 52.7 8.5 78 264-341 28-107 (159)
256 PF15627 CEP76-C2: CEP76 C2 do 96.8 0.0091 2E-07 51.0 8.9 128 114-243 7-152 (156)
257 PLN02964 phosphatidylserine de 96.8 0.0025 5.4E-08 67.1 6.4 91 240-343 49-139 (644)
258 cd04012 C2A_PI3K_class_II C2 d 96.6 0.014 3E-07 51.6 8.8 98 244-341 7-119 (171)
259 cd08399 C2_PI3K_class_I_gamma 96.6 0.019 4.2E-07 50.6 9.5 94 246-340 11-121 (178)
260 cd08693 C2_PI3K_class_I_beta_d 96.5 0.012 2.5E-07 52.0 8.0 77 115-194 7-87 (173)
261 PF15627 CEP76-C2: CEP76 C2 do 96.4 0.033 7.2E-07 47.6 9.8 103 242-359 6-121 (156)
262 PF00792 PI3K_C2: Phosphoinosi 96.4 0.025 5.4E-07 48.3 9.0 75 267-341 3-85 (142)
263 cd08398 C2_PI3K_class_I_alpha 96.3 0.023 4.9E-07 49.3 8.1 92 115-211 7-106 (158)
264 PF10358 NT-C2: N-terminal C2 95.9 0.13 2.9E-06 43.7 11.5 117 117-241 8-135 (143)
265 cd08380 C2_PI3K_like C2 domain 95.9 0.039 8.4E-07 47.9 7.8 95 115-211 7-107 (156)
266 KOG1265|consensus 95.8 0.014 3E-07 61.7 5.7 89 244-342 702-795 (1189)
267 PF00665 rve: Integrase core d 95.8 0.0013 2.8E-08 54.2 -1.8 53 357-409 68-120 (120)
268 PF12416 DUF3668: Cep120 prote 95.8 0.08 1.7E-06 51.6 10.3 116 118-240 2-131 (340)
269 cd08595 PI-PLCc_zeta Catalytic 95.5 0.0051 1.1E-07 57.0 1.0 38 15-52 200-237 (257)
270 cd08597 PI-PLCc_PRIP_metazoa C 95.5 0.0059 1.3E-07 56.9 1.2 41 15-59 203-243 (260)
271 cd08397 C2_PI3K_class_III C2 d 95.4 0.034 7.3E-07 48.3 5.8 76 135-211 28-107 (159)
272 cd04012 C2A_PI3K_class_II C2 d 95.4 0.044 9.6E-07 48.3 6.5 96 115-211 7-119 (171)
273 cd08630 PI-PLCc_delta3 Catalyt 95.4 0.0064 1.4E-07 56.5 1.1 38 15-52 201-238 (258)
274 cd08633 PI-PLCc_eta2 Catalytic 95.1 0.0091 2E-07 55.1 1.1 38 15-52 197-234 (254)
275 smart00142 PI3K_C2 Phosphoinos 95.0 0.16 3.6E-06 40.3 8.1 78 247-324 13-92 (100)
276 cd08626 PI-PLCc_beta4 Catalyti 95.0 0.0092 2E-07 55.3 1.0 38 15-52 200-237 (257)
277 cd08632 PI-PLCc_eta1 Catalytic 95.0 0.0096 2.1E-07 54.9 1.0 41 15-59 196-236 (253)
278 KOG3837|consensus 95.0 0.0092 2E-07 57.9 0.9 97 244-340 366-472 (523)
279 cd08629 PI-PLCc_delta1 Catalyt 94.9 0.0092 2E-07 55.3 0.6 38 15-52 201-238 (258)
280 PF12416 DUF3668: Cep120 prote 94.7 0.17 3.6E-06 49.5 8.8 101 247-355 2-113 (340)
281 cd08628 PI-PLCc_gamma2 Catalyt 94.7 0.015 3.2E-07 53.9 1.4 38 17-54 199-236 (254)
282 cd08596 PI-PLCc_epsilon Cataly 94.6 0.0099 2.1E-07 55.0 0.2 37 15-51 197-233 (254)
283 cd08631 PI-PLCc_delta4 Catalyt 94.5 0.014 3E-07 54.2 0.8 40 15-58 201-240 (258)
284 cd08591 PI-PLCc_beta Catalytic 94.4 0.015 3.3E-07 53.9 1.0 38 15-52 200-237 (257)
285 cd08592 PI-PLCc_gamma Catalyti 94.3 0.019 4.2E-07 52.4 1.3 39 16-54 173-211 (229)
286 cd08695 C2_Dock-B C2 domains f 94.3 0.49 1.1E-05 42.1 10.0 42 152-194 54-95 (189)
287 cd08594 PI-PLCc_eta Catalytic 94.2 0.018 4E-07 52.3 1.0 38 16-53 171-208 (227)
288 cd08625 PI-PLCc_beta3 Catalyti 94.1 0.024 5.2E-07 52.9 1.5 41 15-55 201-241 (258)
289 cd08624 PI-PLCc_beta2 Catalyti 94.0 0.023 5E-07 52.8 1.2 40 15-54 204-243 (261)
290 cd08694 C2_Dock-A C2 domains f 93.9 0.63 1.4E-05 41.5 10.0 42 152-194 54-95 (196)
291 PF00792 PI3K_C2: Phosphoinosi 93.9 0.13 2.9E-06 43.8 5.6 72 139-211 4-85 (142)
292 cd08593 PI-PLCc_delta Catalyti 93.7 0.021 4.6E-07 53.1 0.4 38 15-52 200-237 (257)
293 cd08399 C2_PI3K_class_I_gamma 93.5 0.41 8.9E-06 42.3 8.1 78 115-194 9-89 (178)
294 cd08599 PI-PLCc_plant Catalyti 93.5 0.029 6.4E-07 51.3 0.9 39 14-52 170-208 (228)
295 cd08623 PI-PLCc_beta1 Catalyti 93.5 0.04 8.6E-07 51.2 1.7 40 15-54 201-240 (258)
296 PF14429 DOCK-C2: C2 domain in 93.4 1 2.2E-05 40.2 10.8 59 282-340 59-120 (184)
297 cd08558 PI-PLCc_eukaryota Cata 93.3 0.029 6.2E-07 51.2 0.5 40 13-52 167-206 (226)
298 KOG1452|consensus 93.0 0.46 9.9E-06 44.8 7.9 121 110-241 45-167 (442)
299 cd08687 C2_PKN-like C2 domain 92.9 0.83 1.8E-05 35.1 7.7 84 137-240 9-92 (98)
300 cd08695 C2_Dock-B C2 domains f 92.6 0.28 6.2E-06 43.5 5.8 57 282-338 53-111 (189)
301 smart00142 PI3K_C2 Phosphoinos 92.4 1.7 3.7E-05 34.5 9.5 77 117-194 12-92 (100)
302 cd08627 PI-PLCc_gamma1 Catalyt 92.2 0.045 9.7E-07 49.8 0.3 36 17-52 174-209 (229)
303 PF10358 NT-C2: N-terminal C2 91.8 1.2 2.6E-05 37.8 8.6 93 245-343 7-106 (143)
304 PF14429 DOCK-C2: C2 domain in 91.5 0.37 8E-06 43.1 5.3 58 152-210 60-120 (184)
305 cd08598 PI-PLC1c_yeast Catalyt 90.9 0.08 1.7E-06 48.5 0.4 38 13-50 172-209 (231)
306 cd08679 C2_DOCK180_related C2 90.5 2.1 4.6E-05 37.9 9.2 56 153-210 55-115 (178)
307 cd08694 C2_Dock-A C2 domains f 90.3 0.84 1.8E-05 40.7 6.2 57 282-338 53-113 (196)
308 cd08697 C2_Dock-D C2 domains f 89.1 5.9 0.00013 35.2 10.7 41 152-193 57-97 (185)
309 cd08696 C2_Dock-C C2 domains f 85.6 2 4.3E-05 38.0 5.6 42 152-194 55-96 (179)
310 PF11618 DUF3250: Protein of u 84.3 1.7 3.6E-05 35.0 4.2 95 140-239 2-103 (107)
311 cd08679 C2_DOCK180_related C2 82.4 3.3 7.1E-05 36.7 5.8 56 284-340 55-115 (178)
312 cd08697 C2_Dock-D C2 domains f 82.1 13 0.00027 33.1 9.2 58 282-339 56-122 (185)
313 KOG1452|consensus 81.7 4.1 8.9E-05 38.6 6.2 83 239-329 45-129 (442)
314 cd08696 C2_Dock-C C2 domains f 81.4 4.4 9.5E-05 35.8 6.1 57 282-338 54-116 (179)
315 COG2826 Tra8 Transposase and i 81.1 1.5 3.2E-05 41.5 3.2 74 372-445 235-311 (318)
316 PF15625 CC2D2AN-C2: CC2D2A N- 75.0 8.2 0.00018 33.8 5.9 69 137-212 37-107 (168)
317 PF15625 CC2D2AN-C2: CC2D2A N- 73.5 23 0.0005 31.0 8.4 69 266-342 37-107 (168)
318 KOG1329|consensus 72.6 6.3 0.00014 42.9 5.4 87 137-229 138-225 (887)
319 KOG0906|consensus 64.7 19 0.00041 38.0 6.6 45 295-339 77-122 (843)
320 KOG0694|consensus 62.1 3.1 6.7E-05 43.9 0.6 95 136-242 27-122 (694)
321 KOG0904|consensus 61.4 40 0.00087 36.9 8.5 76 244-322 342-421 (1076)
322 cd08687 C2_PKN-like C2 domain 58.2 52 0.0011 25.6 6.4 46 285-338 24-69 (98)
323 PF07162 B9-C2: Ciliary basal 56.5 1.4E+02 0.0029 26.1 11.0 86 249-340 6-103 (168)
324 COG2801 Tra5 Transposase and i 52.5 6 0.00013 35.6 0.7 81 361-445 143-225 (232)
325 PF07162 B9-C2: Ciliary basal 49.7 1.8E+02 0.0038 25.4 9.7 81 121-208 7-101 (168)
326 PF10409 PTEN_C2: C2 domain of 47.6 1.6E+02 0.0035 24.3 10.8 91 245-339 4-95 (134)
327 PF14924 DUF4497: Protein of u 47.4 22 0.00049 28.7 3.3 59 182-240 28-103 (112)
328 PF10409 PTEN_C2: C2 domain of 42.8 1.5E+02 0.0033 24.4 7.8 89 116-208 4-94 (134)
329 KOG1329|consensus 42.3 24 0.00053 38.6 3.4 87 265-358 137-224 (887)
330 PF11618 DUF3250: Protein of u 40.4 53 0.0011 26.3 4.3 55 283-339 12-71 (107)
331 KOG0906|consensus 39.7 33 0.00072 36.2 3.7 75 135-210 45-123 (843)
332 PF14909 SPATA6: Spermatogenes 38.7 1.9E+02 0.0041 24.4 7.4 88 118-212 4-100 (140)
333 PTZ00447 apical membrane antig 38.5 1.8E+02 0.004 28.3 8.2 109 117-239 59-171 (508)
334 PF13333 rve_2: Integrase core 32.9 56 0.0012 22.1 3.0 43 399-443 1-47 (52)
335 PF14186 Aida_C2: Cytoskeletal 32.8 3.1E+02 0.0068 23.4 8.2 96 241-339 9-110 (147)
336 PF06219 DUF1005: Protein of u 32.0 2.9E+02 0.0063 27.9 8.6 61 183-243 95-169 (460)
337 cd05137 RasGAP_CLA2_BUD2 CLA2/ 31.8 42 0.00091 33.8 3.1 41 200-241 1-44 (395)
338 PF13358 DDE_3: DDE superfamil 25.2 1.1E+02 0.0023 25.1 4.1 49 363-412 87-137 (146)
339 PF14186 Aida_C2: Cytoskeletal 24.6 4.4E+02 0.0096 22.5 7.6 96 115-214 12-115 (147)
340 KOG0241|consensus 21.8 2.9E+02 0.0063 31.1 7.0 130 123-260 694-856 (1714)
341 KOG1032|consensus 20.9 1.5E+02 0.0033 31.6 4.9 84 119-208 100-184 (590)
342 KOG2419|consensus 20.8 23 0.0005 37.2 -1.0 75 118-199 282-361 (975)
343 PF15532 Toxin_53: Putative to 20.1 4.5E+02 0.0097 20.8 6.1 62 107-169 25-92 (102)
No 1
>KOG1028|consensus
Probab=100.00 E-value=2.4e-45 Score=365.79 Aligned_cols=269 Identities=54% Similarity=0.933 Sum_probs=250.5
Q ss_pred CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccc
Q psy15955 98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177 (475)
Q Consensus 98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~ 177 (475)
.....|+|++++.|+.....|.|+|++|++|+.++..|.+||||+++++|+.+.+.+|++.++++||+|||+|.|. |+.
T Consensus 149 ~~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~-v~~ 227 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE-VPY 227 (421)
T ss_pred cceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-cCH
Confidence 3466899999999999999999999999999999977889999999999999889999999999999999999999 888
Q ss_pred cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCC---CcccceeeeeeecCCceeEEEEEEee
Q psy15955 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK---DKCGELLTSLCYHPSNSVLTITLLKA 254 (475)
Q Consensus 178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~---~~~G~l~l~l~~~~~~~~L~v~v~~a 254 (475)
+++....|.+.|||+|+++++++||++.++|..+........|.+|.+... ...|+|.++++|.|..+.|.|.|++|
T Consensus 228 ~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~ka 307 (421)
T KOG1028|consen 228 EELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKA 307 (421)
T ss_pred HHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEe
Confidence 889999999999999999999999999999999988887889999987532 33389999999999999999999999
Q ss_pred ccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEE
Q psy15955 255 RNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334 (475)
Q Consensus 255 ~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~ 334 (475)
++|...+..+.+||||++++..+++...+++|.+.+++.||+|||+|.|.|+.+.+++..|.|+|||++.++++++||.+
T Consensus 308 r~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~ 387 (421)
T KOG1028|consen 308 RNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRC 387 (421)
T ss_pred cCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEE
Confidence 99999999999999999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955 335 LLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP 369 (475)
Q Consensus 335 ~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~ 369 (475)
.+.... .+.+..||.+|++.|++.+..||.|..
T Consensus 388 ~lG~~~--~~~~~~hW~~m~~~p~~pv~~wh~l~~ 420 (421)
T KOG1028|consen 388 ILGSDS--TGEEVRHWQEMLNSPRKPVAQWHSLRS 420 (421)
T ss_pred EecCCC--CchHHHHHHHHHhCccCceeeeEeccc
Confidence 996643 456789999999999999999999864
No 2
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.95 E-value=4.3e-28 Score=204.87 Aligned_cols=136 Identities=32% Similarity=0.592 Sum_probs=125.7
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCccccc--CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE 308 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~ 308 (475)
.|+|.++++|.|..+.|.|.|++|+||+..+. .+.+||||+|++.+++++..++||++++++.||+|||+|.|.|+.+
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 38999999999999999999999999999883 3458999999999888777889999999999999999999999999
Q ss_pred ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955 309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK 368 (475)
Q Consensus 309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~ 368 (475)
++.+..|.|+|||++.++++++||++.+++. +.+++.+||.+|+..|++.+..||.|.
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~--~~g~~~~hW~~ml~~p~~~va~WH~L~ 138 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLH--TSGTERQHWEEMLDNPRRQIAMWHQLH 138 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCc--CCCcHHHHHHHHHhCCCCchhEEEECC
Confidence 9999999999999999999999999999885 366789999999999999999999884
No 3
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.95 E-value=1.8e-27 Score=197.81 Aligned_cols=134 Identities=22% Similarity=0.438 Sum_probs=121.3
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCC-CCeecceEEEeeccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNL-NPVFNESFSFNVPWEKI 310 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~-nP~w~e~f~f~v~~~~l 310 (475)
++|+++++|.|..++|.|.|++|+||++.+..+..||||+|++.++++...++||++++++. ||.|||+|.|+|+.++
T Consensus 1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~- 79 (135)
T cd08692 1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE- 79 (135)
T ss_pred CeEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-
Confidence 47999999999999999999999999988666778999999999988888899999999995 6999999999999765
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL 367 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L 367 (475)
.+..|.|+|||++..+++++||++.++... .++++.+||.+|+..|++.+++||.|
T Consensus 80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~-~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDS-SSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred heeEEEEEEEeCCCCcCCceEEEEEECCcc-CCchhhhhHHHHHhCCCCeeeEeecC
Confidence 467899999999999999999999997754 45567899999999999999999986
No 4
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.95 E-value=2.3e-27 Score=200.78 Aligned_cols=135 Identities=33% Similarity=0.622 Sum_probs=125.7
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR 311 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~ 311 (475)
|+|.++++|.+..+.|.|+|++|+||+..+..|.+||||++++.++++...+++|++++++.||+|||+|.|.|+.+++.
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~ 81 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQ 81 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhC
Confidence 89999999999999999999999999999988999999999999887776788999999999999999999999988898
Q ss_pred cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955 312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK 368 (475)
Q Consensus 312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~ 368 (475)
+..|.|+|||++..+++++||++.|+.. +.+.+.+||.+|+..|++.+..||.|.
T Consensus 82 ~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v~~WH~l~ 136 (136)
T cd08406 82 DLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPVAMWHPLR 136 (136)
T ss_pred CcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCeeeEeeecC
Confidence 9999999999999999999999999654 456788999999999999999999873
No 5
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.94 E-value=3.6e-26 Score=194.76 Aligned_cols=136 Identities=35% Similarity=0.643 Sum_probs=127.0
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
.|+|++++.|.+..+.|.|.|++|+||+..+ .+.+||||++++.++++...+++|++++++.||.|||+|.|.++.+++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL 79 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence 4899999999999999999999999999988 788999999999887766667899999999999999999999998888
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL 367 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L 367 (475)
.+..|.|+|||++..+++++||++.|+....+.+++.+||.+|+..|++.++.||.|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l 136 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL 136 (137)
T ss_pred CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence 888999999999999999999999998777777889999999999999999999987
No 6
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.93 E-value=1e-25 Score=182.84 Aligned_cols=117 Identities=26% Similarity=0.495 Sum_probs=106.8
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD-KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ 181 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~ 181 (475)
|+|++++.|+...+.|.|+|++|++|+ ..|.+||||+|++.++ +..+.+|+++++|+||+|||+|.|. ++.+++.
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~-v~~~~l~ 76 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP-LPEEESL 76 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe-CCHHHhC
Confidence 579999999999999999999999999 2466999999999864 4457799999999999999999999 8999999
Q ss_pred cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955 182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL 223 (475)
Q Consensus 182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L 223 (475)
...|.|+|||+|+++++++||++.++++++..+....+|.+|
T Consensus 77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999999999999999999999999998778788889765
No 7
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.93 E-value=5.5e-26 Score=230.76 Aligned_cols=204 Identities=22% Similarity=0.227 Sum_probs=147.7
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeee
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDM 91 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~ 91 (475)
.=++++++++||||+|+|+||||++|...|...+..++.+=++. +....++|..||+||||+||+||+..+.+...
T Consensus 380 ~v~~nk~~L~RIYPkG~RvdSSNynP~~~W~~GcQMVALN~Qt~d~~M~LN~G~F~~NG~CGYVLKP~~Lr~~~~~~~~- 458 (598)
T PLN02230 380 VIRFTQKNFLRIYPKGTRFNSSNYKPQIGWMSGAQMIAFNMQGYGRALWLMEGMFRANGGCGYVKKPDFLMDAGPNGQD- 458 (598)
T ss_pred HHHhhhhhceeeCCCCCcCCCCCCCchhHhcCceEEeeecccCCChHHHhhcchhccCCCCCceECCHHhcCCCccccc-
Confidence 34789999999999999999999999877544444433332221 22344889999999999999999875422111
Q ss_pred EeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCC------CCCCCCCcEEEEEEe--CCCCceEEeeeecCCCC
Q psy15955 92 YIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAK------DMSGTSDPYVKVALL--PDKKHRLETKIKRRTLN 163 (475)
Q Consensus 92 ~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~------~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~n 163 (475)
.++..+. ....+|.|+|+++.+|+.. +....+||||+|.+. |.+..+.+|++..+++|
T Consensus 459 -fdP~~~~-------------~~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~n 524 (598)
T PLN02230 459 -FYPKDNS-------------CPKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWT 524 (598)
T ss_pred -cCCCcCC-------------CcCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCC
Confidence 1121111 1245799999999987521 234568999999995 34555678999999999
Q ss_pred ceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCc--ccceeeeee
Q psy15955 164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK--CGELLTSLC 239 (475)
Q Consensus 164 P~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~--~G~l~l~l~ 239 (475)
|+|||+|.|. +.+.+ -+.|+|+|+|+|..++++|+|++++|+..|..|-. ..+|....+.. ...|.+.+.
T Consensus 525 P~Wneef~F~-l~vPE--LAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~ 596 (598)
T PLN02230 525 PIWNKEFIFP-LAVPE--LALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFE 596 (598)
T ss_pred CccCCeeEEE-EEcCc--eeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEE
Confidence 9999999998 44444 46999999999988899999999999999976533 56776655542 234444443
No 8
>PLN02223 phosphoinositide phospholipase C
Probab=99.93 E-value=8e-26 Score=225.08 Aligned_cols=201 Identities=16% Similarity=0.185 Sum_probs=147.8
Q ss_pred HHHhhhhhhhcccCcc-ccCCCCCCCCCCCCCCCCCcccCCC---CCCcccccccccCCCCCCCCcccccccccceeeeE
Q psy15955 17 RFLSQSVAQLETAGTT-VDSNNSKSPVPGSSHAMEGAIASSS---SSTPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMY 92 (475)
Q Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~~ 92 (475)
+|+++.++|+||+|+| +||||++|...|...+...+.+=++ .++...++|..||+||||+||+||+..+.+. .
T Consensus 322 ~ft~~~l~RiYPkG~R~~dSSNYnP~~~W~~GcQmVALN~QT~d~~M~LN~G~F~~NG~CGYVLKP~~Lr~~~~~~---~ 398 (537)
T PLN02223 322 SFTQKKFLRTRPKKKNLLINAPYKPQRAWMHGAQLIALSRKDDKEKLWLMQGMFRANGGCGYVKKPDFLLNAGPSG---V 398 (537)
T ss_pred hhcccceEEECCCCCccccCCCCCChhhcccceeEeeeccCCCChhHHhhcchhccCCCCCceECChhhccCCccc---c
Confidence 6899999999999999 5999999988755544444433333 2334558899999999999999998754321 1
Q ss_pred eCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEe--CCCCceEEeeeecCCCCce
Q psy15955 93 IDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAK-----DMSGTSDPYVKVALL--PDKKHRLETKIKRRTLNPR 165 (475)
Q Consensus 93 ~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~-----~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~nP~ 165 (475)
.++.... .....|.|+|++|++|+.. +....+||||+|.+. |.+..+++|.+..|++||+
T Consensus 399 FdP~~~~-------------~~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPv 465 (537)
T PLN02223 399 FYPTENP-------------VVVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPT 465 (537)
T ss_pred cCCCCCc-------------ccceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCce
Confidence 1221111 0245799999999998521 234578999999995 3455567888999999999
Q ss_pred eeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCc--ccceeeeee
Q psy15955 166 WNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK--CGELLTSLC 239 (475)
Q Consensus 166 w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~--~G~l~l~l~ 239 (475)
|||+|.|. +.+. ..+.|+|+|+|+|..++++|+|++++|+..|..|- .+.+|....+.. ...|.+.+.
T Consensus 466 Wne~F~F~-i~~P--ELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~ 535 (537)
T PLN02223 466 WGEEFTFP-LTYP--DLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFK 535 (537)
T ss_pred ecceeEEE-EEcc--CceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEE
Confidence 99999998 4444 45689999999998888999999999999997664 466777665543 234444443
No 9
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.93 E-value=1.9e-25 Score=181.21 Aligned_cols=118 Identities=21% Similarity=0.353 Sum_probs=106.4
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR 311 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~ 311 (475)
|+|+++++|.+..+.|.|+|++|++|+ ..|.+||||++++.++++ ..+++|+++++|+||+|||+|.|.|+.+++.
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 579999999999999999999999998 246699999999976554 3467999999999999999999999999999
Q ss_pred cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
+..|.|+|||+|+++++++||++.+++.+..-+.+.++|.++
T Consensus 77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999999999999999999999999877666678889764
No 10
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.93 E-value=3.3e-25 Score=188.50 Aligned_cols=136 Identities=32% Similarity=0.527 Sum_probs=123.3
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCc-eeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGE-KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.++. +...+++|++++++.||+|||+|.|.++.+++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 78999999999999999999999999999999999999999998753 44567899999999999999999999998888
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK 368 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~ 368 (475)
.+..|.|+|||++.++++++||++.+++. ..+.++.+||.+|+..|++.+..||.|.
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~-~~~~~~~~hW~~~l~~~~~~v~~WH~l~ 138 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLN-SSGEEEEEHWNEMKESKGQQVCRWHTLL 138 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCc-CCCchHHHHHHHHHhCCCCEEeEeeecC
Confidence 88999999999999999999999999774 3334567899999999999999999873
No 11
>KOG0169|consensus
Probab=99.92 E-value=1.8e-25 Score=226.14 Aligned_cols=198 Identities=22% Similarity=0.308 Sum_probs=149.3
Q ss_pred HHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCCCc-------ccccccccCCCCCCCCcccccccccce
Q psy15955 16 SRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSSTP-------LHNKAVANVKAGEHPSSAFMQSRSVSL 88 (475)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~n~~~g~~~~~~~l~~~~~s~ 88 (475)
-++++++++||||.++|+||||+.|... |+.|+++.+-+.+. ..++|++||+||||+||+||...+..+
T Consensus 530 v~~t~r~L~RvYP~~~R~dSSNynPq~~----W~~G~QmVAlN~Qt~G~~l~L~~G~Fr~NGgCGYVlKP~~L~~~~~~F 605 (746)
T KOG0169|consen 530 VRHTQRNLLRVYPKGLRVDSSNYNPQEF----WNHGCQMVALNFQTPGRMLDLNQGMFRANGGCGYVLKPDFLLDSGSTF 605 (746)
T ss_pred HHHhHhheeeecCCccccCCCCCChHHH----HhcCceEEEEecCCCChhhhhhhhhhccCCCccceECcHHHcCCCCcc
Confidence 5789999999999999999999999766 67777777666554 348899999999999999999833222
Q ss_pred eeeEeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCC-C---CCCCCcEEEEEEe--CCCCceEEee-eecCC
Q psy15955 89 VDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKD-M---SGTSDPYVKVALL--PDKKHRLETK-IKRRT 161 (475)
Q Consensus 89 ~~~~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~-~---~~~~dpyv~v~l~--~~~~~~~kT~-v~~~~ 161 (475)
++... ..+ ...+|.|+|+++.+++..- . ...+||||.|.+. |.+..+.+|+ |..|+
T Consensus 606 -----~P~~~--~~~----------~~~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~Ng 668 (746)
T KOG0169|consen 606 -----DPKSN--LPP----------VKKTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNG 668 (746)
T ss_pred -----CCCCC--CCC----------CCceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCC
Confidence 22111 011 2227999999999776442 2 2467999999984 4455678999 77789
Q ss_pred CCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC--cccceeeeee
Q psy15955 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD--KCGELLTSLC 239 (475)
Q Consensus 162 ~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~--~~G~l~l~l~ 239 (475)
+||.|+|+|.|. +.+.++ +.|+|.|+|+|..++|+|+|+.++|+.+|..|-. ..+|....|+ ....|.+.+.
T Consensus 669 fnP~W~e~f~F~-l~vPEL--AliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~~asLfv~i~ 742 (746)
T KOG0169|consen 669 FNPIWDEEFEFQ-LSVPEL--ALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALSSASLFVRIA 742 (746)
T ss_pred cCcccCCeEEEE-Eeccce--eEEEEEEEecCCCCcccccceeeccHHHhhCcee---eeeecCCCCccccceeEEEEEE
Confidence 999999999999 666554 5999999999999999999999999999976533 4566555443 2344555544
Q ss_pred e
Q psy15955 240 Y 240 (475)
Q Consensus 240 ~ 240 (475)
+
T Consensus 743 ~ 743 (746)
T KOG0169|consen 743 I 743 (746)
T ss_pred E
Confidence 4
No 12
>KOG1013|consensus
Probab=99.92 E-value=3.9e-26 Score=209.08 Aligned_cols=269 Identities=30% Similarity=0.460 Sum_probs=229.4
Q ss_pred CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccc
Q psy15955 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPI 177 (475)
Q Consensus 100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~ 177 (475)
-..|.+.+.+.|+.....+..++.+|++|..++..+..|||++..++|.-. ...+|++..+++||.|+|+-.+..+.-
T Consensus 77 t~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~ 156 (362)
T KOG1013|consen 77 TTLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITD 156 (362)
T ss_pred hhccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccccc
Confidence 356999999999999999999999999999999999999999999987533 357899999999999999876664444
Q ss_pred cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcc--eeeccCCC-C------CCcccceeeeeeecCCceeEE
Q psy15955 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT--FWKALKPP-A------KDKCGELLTSLCYHPSNSVLT 248 (475)
Q Consensus 178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~--~~~~L~~~-~------~~~~G~l~l~l~~~~~~~~L~ 248 (475)
.......+++.|.|.+.+..++++|+..+++..+...+... .|+.-..+ . -+..|.|.+++.|.....-+.
T Consensus 157 ~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~ 236 (362)
T KOG1013|consen 157 DDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLI 236 (362)
T ss_pred chhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceE
Confidence 55556789999999999999999999999999887665533 23322211 1 257899999999999999999
Q ss_pred EEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCC
Q psy15955 249 ITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRN 328 (475)
Q Consensus 249 v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d 328 (475)
|++++|..|..+|.++-+||||+.++.++.....+++|.+.+++.+|.|++.|.|.+.+.+|....+.|.|||++..+..
T Consensus 237 vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~ 316 (362)
T KOG1013|consen 237 VTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSN 316 (362)
T ss_pred EEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCc
Confidence 99999999999999999999999999888777788999999999999999999999999999999999999999988788
Q ss_pred eeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955 329 ELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370 (475)
Q Consensus 329 ~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s 370 (475)
+++|-+...+ ...++-+.||.+....+......|+.|...
T Consensus 317 d~~GG~~~g~--~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~ 356 (362)
T KOG1013|consen 317 DSIGGSMLGG--YRRGEVHKHWGRCLFDQDANFERSSGLETE 356 (362)
T ss_pred cCCCcccccc--cccchhhcCccccccccccccccccccccc
Confidence 9999887743 344567789999888888888888888654
No 13
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.92 E-value=1.2e-24 Score=182.44 Aligned_cols=122 Identities=39% Similarity=0.643 Sum_probs=111.3
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeeccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQ 178 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~ 178 (475)
+|+|++++.|+...+.|.|+|++|++|++.+.. |.+||||+|++.|++ ..++||+++++++||+|||+|.|. ++..
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~~ 79 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VERE 79 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCHH
Confidence 599999999999999999999999999999975 899999999998765 345799999999999999999999 7777
Q ss_pred ccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955 179 KLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224 (475)
Q Consensus 179 ~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~ 224 (475)
++....|.|+|||+|..+++++||++.++|.++..+.....|++|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 7777899999999999999999999999999998887788999874
No 14
>PLN02952 phosphoinositide phospholipase C
Probab=99.92 E-value=9.1e-25 Score=222.35 Aligned_cols=204 Identities=21% Similarity=0.242 Sum_probs=151.4
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeee
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDM 91 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~ 91 (475)
.-+++++.+.|+||+|+|+||+|++|...|...+...+.+=++. +....++|..||+||||+||++|+.....- -
T Consensus 381 ~v~~n~~~l~RiYP~g~R~dSsNy~P~~~W~~G~QmVAlN~Qt~d~~m~lN~g~F~~NG~cGYVlKP~~lr~~~~~~--~ 458 (599)
T PLN02952 381 VVRFTQRNILRIYPKGTRITSSNYKPLIGWMHGAQMIAFNMQGYGKSLWLMHGMFRANGGCGYLKKPDFLMKKGFHD--E 458 (599)
T ss_pred HHHHhhhhceeeCCCCCcCcCCCCCchhHhcCccEEeeecccCCChHHHhhhchhccCCCCCceECCHHHcccCCcc--c
Confidence 34789999999999999999999999888555444444333332 233458899999999999999998643211 0
Q ss_pred EeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCC------CCCCCCCcEEEEEEe--CCCCceEEeeeecCCCC
Q psy15955 92 YIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAK------DMSGTSDPYVKVALL--PDKKHRLETKIKRRTLN 163 (475)
Q Consensus 92 ~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~------~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~n 163 (475)
..++.... .....|.|+|++|.+|+.. +....+||||+|.+. |.+..+.+|+++.+++|
T Consensus 459 ~fdp~~~~-------------~~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~n 525 (599)
T PLN02952 459 VFDPKKKL-------------PVKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWY 525 (599)
T ss_pred ccCCCCCC-------------CccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCC
Confidence 11222111 1235699999999998632 223456999999995 34556779999999999
Q ss_pred ceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeee
Q psy15955 164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLC 239 (475)
Q Consensus 164 P~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~ 239 (475)
|+|||+|.|. +.+.+ ...|+|+|||+|..+.++|+|++++||..|..|- .|++|....+...+...+-+.
T Consensus 526 PvWnE~F~F~-i~~PE--LAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~ 595 (599)
T PLN02952 526 PAWNEEFSFP-LTVPE--LALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMR 595 (599)
T ss_pred cccCCeeEEE-EEcCC--ccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEE
Confidence 9999999998 44444 4689999999998888999999999999998765 488998777766665544443
No 15
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.92 E-value=1.3e-24 Score=184.88 Aligned_cols=135 Identities=41% Similarity=0.720 Sum_probs=121.3
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR 311 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~ 311 (475)
|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.++.+...+++|++++++.||.|||+|.|.++.++++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 89999999999999999999999999999999999999999987665555678999999999999999999999888887
Q ss_pred cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955 312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL 367 (475)
Q Consensus 312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L 367 (475)
+..|.|+|||++..+++++||++.|+. ...+..+..+|.+|+..+++.+..||.|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~-~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQ-YSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcC-ccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 778999999999999999999999865 2333456799999999999999999986
No 16
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.92 E-value=2.5e-24 Score=179.62 Aligned_cols=118 Identities=42% Similarity=0.760 Sum_probs=107.9
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQKL 180 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~ 180 (475)
|+|++++.|. .+.|.|.|++|++|+..+ .+.+||||+|++.++. ..++||++++++.||+|||+|.|..++..++
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 8999999998 899999999999999999 8999999999998754 3467999999999999999999984477777
Q ss_pred ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955 181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL 223 (475)
Q Consensus 181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L 223 (475)
....|+|+|||+|..+++++||++.++|+++..++....||+|
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 7889999999999999999999999999999988778899987
No 17
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.91 E-value=2.4e-24 Score=183.91 Aligned_cols=136 Identities=47% Similarity=0.848 Sum_probs=123.9
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
.|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||+|++.++++...+++|++++++.||.|||+|.|.++.+++
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 48999999999999999999999999999999999999999998766655567899999999999999999999987777
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK 368 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~ 368 (475)
....|.|+|||++.++++++||++.|++.. .+.+..+|.+++..|++.+..||.|.
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~~~wh~~~ 136 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPIAQWHTLQ 136 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCeeeEEEEcC
Confidence 777899999999999999999999999854 46788999999999999999999874
No 18
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.91 E-value=2.9e-24 Score=183.39 Aligned_cols=136 Identities=49% Similarity=0.902 Sum_probs=124.5
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
+|+|.++++|.+..+.|.|.|++|++|+..+..|.+||||++++.+++....+++|++++++.||.|+|+|.|.++..++
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 59999999999999999999999999999999999999999999776666667899999999999999999999987777
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK 368 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~ 368 (475)
....|.|+|||++.++++++||++.+++.. .+.+..+|.++...|++.+..||.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i~~Wh~l~ 136 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQIAEWHMLC 136 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCeeeEEEecC
Confidence 677899999999999999999999999876 46788999999999999999999873
No 19
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.91 E-value=2e-24 Score=184.35 Aligned_cols=136 Identities=61% Similarity=1.048 Sum_probs=123.8
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
+|+|.++++|.+..+.|.|+|++|+||+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.++.+++
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~ 80 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL 80 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence 49999999999999999999999999999998999999999998765555557899999999999999999999987777
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK 368 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~ 368 (475)
++..|.|+|||++.++++++||++.+++... +.+.++|.+|+..|++.+..||.|.
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~~wh~l~ 136 (136)
T cd08405 81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVAQWHRLK 136 (136)
T ss_pred CCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchhEEEecC
Confidence 7778999999999999999999999998765 5678999999999999999999873
No 20
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.91 E-value=5.8e-24 Score=178.17 Aligned_cols=121 Identities=40% Similarity=0.645 Sum_probs=110.5
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDM-SGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
|+|++++.|+...+.|.|+|++|++|+..+. .+.+||||+|++.|++. .++||+++++++||+|||+|.|. ++...
T Consensus 2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~ 80 (125)
T cd04029 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHSQ 80 (125)
T ss_pred cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHHH
Confidence 8999999999999999999999999998875 47899999999987653 46799999999999999999999 77777
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~ 224 (475)
+....|.|+|||+|..+++++||++.++|.++........|++|.
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 777789999999999999999999999999999988889999984
No 21
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.91 E-value=4.8e-24 Score=181.60 Aligned_cols=134 Identities=48% Similarity=0.846 Sum_probs=121.9
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR 311 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~ 311 (475)
|+|.+++.|.+..+.|.|+|++|++|+..+..|.+||||++++.+.+....+++|++++++.||.|||+|.|.++.+.+.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 89999999999999999999999999999999999999999997666556678999999999999999999999877776
Q ss_pred cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955 312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL 367 (475)
Q Consensus 312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L 367 (475)
...|.|+|||++..+++++||++.+++. ..+.+.++|.+++..|++.+..||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~~~wh~~ 134 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPIAQWHQL 134 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCeeeEeecC
Confidence 6789999999999999999999999875 34567789999999999999999986
No 22
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.91 E-value=7.5e-24 Score=177.33 Aligned_cols=123 Identities=35% Similarity=0.639 Sum_probs=114.6
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ 181 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~ 181 (475)
.|+|++++.|+...++|.|+|++|++|+..+..+.+||||++.+.+.+.+++||+++++ .||+|||+|.|..++..++.
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~ 80 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELN 80 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhc
Confidence 69999999999999999999999999999998889999999999888778889999888 99999999999867777788
Q ss_pred cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955 182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP 225 (475)
Q Consensus 182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 225 (475)
...|.|+|||++.++++++||++.++|+++..+.....|++|.|
T Consensus 81 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 81 NMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred cCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 88999999999999999999999999999988888899999975
No 23
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.91 E-value=4.8e-24 Score=216.41 Aligned_cols=193 Identities=20% Similarity=0.219 Sum_probs=143.7
Q ss_pred HHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeeeE
Q psy15955 16 SRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMY 92 (475)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~~ 92 (475)
=+++++++.|+||+|+|+||||++|...|...+...+.+=++. +....++|..||+||||+||++|+.....-..
T Consensus 364 v~~n~~~L~RiYP~G~RvdSSNynP~~~W~~G~QmVALN~QT~d~~M~LN~G~F~~NG~cGYVLKP~~lr~~~~~~~~-- 441 (581)
T PLN02222 364 VRFTQHNLLRIYPKGTRVTSSNYNPLVGWSHGAQMVAFNMQGYGRSLWLMQGMFRANGGCGYIKKPDLLLKSGSDSDI-- 441 (581)
T ss_pred HHHhhhhceeeCCCCCcCcCCCCCchhHhcCCcEEeeccccCCChhhhhhcchhccCCCCceEECCHHhccCCccccc--
Confidence 3689999999999999999999999888655555544443332 33455889999999999999999876432111
Q ss_pred eCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCC----C--CCCCCCCCcEEEEEEe--CCCCceEEeeeecCCCCc
Q psy15955 93 IDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELP----A--KDMSGTSDPYVKVALL--PDKKHRLETKIKRRTLNP 164 (475)
Q Consensus 93 ~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~----~--~~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~nP 164 (475)
.++..... ....|.|+|+++.+++ . .+....+||||+|.+. |.+..+.+|+++.++.||
T Consensus 442 fdp~~~~~-------------~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP 508 (581)
T PLN02222 442 FDPKATLP-------------VKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIP 508 (581)
T ss_pred cCCCCCCC-------------ccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCc
Confidence 12221111 2346999999999854 1 1233568999999995 445667899999999999
Q ss_pred eeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC
Q psy15955 165 RWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD 229 (475)
Q Consensus 165 ~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~ 229 (475)
+|||+|.|. +.+.+ ...|+|.|||+|..+.++|+|++++|+..|..|-. ..+|....+.
T Consensus 509 ~W~e~f~F~-i~~Pe--LAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~ 567 (581)
T PLN02222 509 AWDEVFEFP-LTVPE--LALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGE 567 (581)
T ss_pred ccCCeeEEE-EEcCc--eeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCcC
Confidence 999999998 44444 56999999999988889999999999999976533 5577665543
No 24
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.91 E-value=1.4e-23 Score=176.59 Aligned_cols=125 Identities=43% Similarity=0.809 Sum_probs=111.1
Q ss_pred cccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 101 ~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
.+|+|++++.|+...+.|.|+|++|++|+..+.. +.+||||+|++.+.+.++.||+++++++||+|||+|.|..++..+
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 3699999999999999999999999999998876 899999999998777777899999999999999999995466666
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCC--CCcceeeccCC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS--EKPTFWKALKP 225 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~--~~~~~~~~L~~ 225 (475)
+....|+|+|||+|.++++++||++.++|+++... +....|.+|++
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 66678999999999999999999999999999776 44568998864
No 25
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.91 E-value=1.1e-23 Score=176.71 Aligned_cols=122 Identities=35% Similarity=0.627 Sum_probs=109.7
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQ 178 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~ 178 (475)
.|+|++++.|+...+.|.|+|++|++|+..+.. |.+||||++++.|+.. .++||++++++.||+|||+|.|. ++..
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~~ 79 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEAD 79 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCHH
Confidence 499999999999999999999999999999875 8999999999988753 46799999999999999999999 7777
Q ss_pred ccccceEEEEEEeeCCCCCCccccceeeccccccCCC---CcceeeccC
Q psy15955 179 KLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE---KPTFWKALK 224 (475)
Q Consensus 179 ~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~~~~L~ 224 (475)
++....|+|.|||.+.++++++||++.|+|+++.... ....||+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 7777899999999999999999999999999997654 456899873
No 26
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.91 E-value=7.7e-24 Score=176.05 Aligned_cols=119 Identities=28% Similarity=0.427 Sum_probs=109.7
Q ss_pred EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC---ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK---HRLETKIKRRTLNPRWNETLYFEGFPIQKL 180 (475)
Q Consensus 104 ~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~---~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~ 180 (475)
+|++++.|+...+.|.|.|++|+||+..+..+.+||||++++.|+++ .++||+++++++||+|||+|.|. ++.+++
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L 80 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTKL 80 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHHh
Confidence 68999999999999999999999999998888999999999998873 57899999999999999999999 888899
Q ss_pred ccceEEEEEEeeCCCCCCccccceeeccccccCCC-Ccceeecc
Q psy15955 181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE-KPTFWKAL 223 (475)
Q Consensus 181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~~~~~L 223 (475)
....|+|+|||++..+++++||++.++|+++.... ....||.|
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999999999999999999999999996664 46789876
No 27
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.91 E-value=1.6e-23 Score=175.92 Aligned_cols=122 Identities=52% Similarity=0.918 Sum_probs=112.4
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ 181 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~ 181 (475)
+|+|+++++|+...+.|.|+|++|++|+..+..+.+||||+|++.+.+...++|++++++.||+|||+|.|. ++..++.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~ 80 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK-VPYSELG 80 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe-CCHHHhC
Confidence 699999999999999999999999999999988999999999998776677899999999999999999999 6665666
Q ss_pred cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955 182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224 (475)
Q Consensus 182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~ 224 (475)
...|.|+|||+|.++++++||++.++|+++..+.....|++|.
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 6789999999999999999999999999998888889999985
No 28
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.91 E-value=2.8e-23 Score=176.70 Aligned_cols=124 Identities=33% Similarity=0.494 Sum_probs=108.9
Q ss_pred CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeec
Q psy15955 98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEG 174 (475)
Q Consensus 98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~ 174 (475)
.....|+|++++.| ..+.|.|.|++|++|+..+ ..+.+||||++++.+++. .+.||+++++++||+|||+|.|.
T Consensus 13 ~~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~- 89 (146)
T cd04028 13 ASPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD- 89 (146)
T ss_pred cCCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-
Confidence 34558999999999 5789999999999999864 568899999999987654 36799999999999999999999
Q ss_pred ccccccccceEEEEEE-eeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 175 FPIQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 175 ~~~~~~~~~~L~~~V~-d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
++ +....|.|+|| |++.++++++||++.|+|+++..+.....||+|.+..
T Consensus 90 v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 90 VS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred Ec---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 44 56789999999 6888888999999999999998888888999998754
No 29
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.90 E-value=2.4e-23 Score=174.91 Aligned_cols=122 Identities=48% Similarity=0.889 Sum_probs=113.1
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ 181 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~ 181 (475)
+|+|++++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+.+...++|++++++.||+|||+|.|. ++...+.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~ 80 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE-VPPQELP 80 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe-CCHHHhC
Confidence 699999999999999999999999999999999999999999998766677899999999999999999998 7766666
Q ss_pred cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955 182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224 (475)
Q Consensus 182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~ 224 (475)
...|.|+|||++.++++++||++.++|+++..++....|++|+
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 7789999999999999999999999999999888889999985
No 30
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.90 E-value=1.2e-23 Score=178.98 Aligned_cols=133 Identities=34% Similarity=0.578 Sum_probs=120.9
Q ss_pred ceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccccc
Q psy15955 233 ELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRE 312 (475)
Q Consensus 233 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~ 312 (475)
.|++++.|.+..+.|.|+|++|++|+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.++..++..
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 47899999999999999999999999999889999999999987655556789999999999999999999998777777
Q ss_pred ceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955 313 CSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL 367 (475)
Q Consensus 313 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L 367 (475)
..|.|+|||++..+++++||++.+++.. .++...+|.+++..|++.+..||.|
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~~~wh~l 133 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKIEAWHTL 133 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCChheeecC
Confidence 7899999999998899999999999864 4567789999999999999999976
No 31
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.90 E-value=3.6e-23 Score=174.18 Aligned_cols=124 Identities=69% Similarity=1.170 Sum_probs=113.4
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ 181 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~ 181 (475)
+|+|++++.|......|.|+|++|++|+..+..+.+||||+|++.+.+.+..+|++++++.||+|||+|.|..++.+.+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~ 81 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQ 81 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhC
Confidence 69999999999999999999999999999998899999999999776667789999999999999999999755555666
Q ss_pred cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955 182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP 225 (475)
Q Consensus 182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 225 (475)
...|.|+|||+|..+++++||++.++++++..+.....|+.|.+
T Consensus 82 ~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 82 QRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 67899999999999899999999999999998888899999864
No 32
>KOG2059|consensus
Probab=99.90 E-value=1.9e-23 Score=207.95 Aligned_cols=217 Identities=28% Similarity=0.425 Sum_probs=178.6
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
...|.|+|.+|+||+..+..|.+||||.|.+ +.....||.++.+++.|.|.|+|.|. +|.. ...|.|.|||.|
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~l--D~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~---F~~l~fYv~D~d- 76 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNL--DQEEVCRTATVEKSLCPFFGEEFYFE-IPRT---FRYLSFYVWDRD- 76 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEee--cchhhhhhhhhhhhcCCccccceEEe-cCcc---eeeEEEEEeccc-
Confidence 4569999999999999999999999999999 45557899999999999999999998 6643 468999999999
Q ss_pred CCCCccccceeeccccccCCCCcceeeccCCC--CCCcccceeeeeeecCC--ceeEEEEEEeeccCcccccCCCccceE
Q psy15955 195 FSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP--AKDKCGELLTSLCYHPS--NSVLTITLLKARNLKAKDINGKSDPYV 270 (475)
Q Consensus 195 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~--~~~~~G~l~l~l~~~~~--~~~L~v~v~~a~~L~~~~~~~~~dpyv 270 (475)
+++|+.||.+.|.=++|....+.+.|+.|.+- +.+..|+|++.+.+.+. ...+...++.++++.+.. ++.+|||+
T Consensus 77 ~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~ 155 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFA 155 (800)
T ss_pred cccccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcce
Confidence 89999999999999999887788999999864 45688999999998763 445667778888877765 44599999
Q ss_pred EEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc-------------ccceEEEEEEe-ccCCCCCeeeEEEEE
Q psy15955 271 KVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI-------------RECSLNVMVMD-FDNIGRNELIGRILL 336 (475)
Q Consensus 271 ~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l-------------~~~~l~i~V~d-~~~~~~d~~lG~~~i 336 (475)
++.+.. +......+|++++++.+|.|+|.|.|.+..+.- ....|.+++|+ ++....++|+|++.+
T Consensus 156 ~v~~~g-~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv 234 (800)
T KOG2059|consen 156 RVTLCG-PSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRV 234 (800)
T ss_pred EEeecc-cchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEe
Confidence 998643 333344789999999999999999999865410 12468899999 555666999999999
Q ss_pred cCcC
Q psy15955 337 AGKN 340 (475)
Q Consensus 337 ~l~~ 340 (475)
++..
T Consensus 235 ~v~~ 238 (800)
T KOG2059|consen 235 PVDV 238 (800)
T ss_pred ehhh
Confidence 8743
No 33
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.90 E-value=3.6e-23 Score=173.55 Aligned_cols=122 Identities=31% Similarity=0.492 Sum_probs=106.8
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEK 309 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~ 309 (475)
+|+|++++.|.+..+.|.|.|++|+||++.+.. |.+||||++++.++.....+++|++++++.||+|||+|.|.++.++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 599999999999999999999999999999875 8899999999987765556789999999999999999999998888
Q ss_pred cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955 310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD 352 (475)
Q Consensus 310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~ 352 (475)
+.+..|.|+|||++.++++++||++.|++.+.........|+.
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~ 123 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYP 123 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEE
Confidence 8888999999999999999999999999876544333344443
No 34
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.89 E-value=9.4e-23 Score=169.55 Aligned_cols=120 Identities=24% Similarity=0.302 Sum_probs=106.0
Q ss_pred ceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceee-eeeecccccCCCCCeecceEEEeecccccc
Q psy15955 233 ELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI-EKRKTQIFKCNLNPVFNESFSFNVPWEKIR 311 (475)
Q Consensus 233 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~ 311 (475)
+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++++.++.... .+++|++++++.||+|||+|.|+++.+++.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 6899999999999999999999999999888899999999999887543 578999999999999999999999999999
Q ss_pred cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCC-cccccccc
Q psy15955 312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGA-SETKHWQD 352 (475)
Q Consensus 312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~-~~~~~w~~ 352 (475)
+..|.|+|||++..+++++||++.|++.+.... +...+|++
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 999999999999999999999999998765332 23444543
No 35
>PLN02228 Phosphoinositide phospholipase C
Probab=99.89 E-value=9.2e-23 Score=206.53 Aligned_cols=204 Identities=22% Similarity=0.273 Sum_probs=150.4
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeee
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDM 91 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~ 91 (475)
.=.++++++.|+||+|+|+||+|++|...|...+...+.+=++. +....++|..||+||||+||++|+.....+
T Consensus 345 ~v~hNkr~l~RvYP~g~RvdSSNy~P~~~W~~G~QmVALN~QT~d~~M~lN~g~F~~NG~cGYVLKP~~Lr~~~~~f--- 421 (567)
T PLN02228 345 LVRFTQRNLVRIYPKGTRVDSSNYDPHVGWTHGAQMVAFNMQGHGKQLWIMQGMFRANGGCGYVKKPRILLDEHTLF--- 421 (567)
T ss_pred HHHHhhhhceeeCCCCCcCCCCCCCchhHhcCccEEeeecccCCChHHHhhcCchhhCCCCCceeCchhhccccccc---
Confidence 34578999999999999999999999887655555444443332 223558899999999999999999753221
Q ss_pred EeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCC---C---CCCCCCCcEEEEEEe--CCCCceEEeeeecCCCC
Q psy15955 92 YIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPA---K---DMSGTSDPYVKVALL--PDKKHRLETKIKRRTLN 163 (475)
Q Consensus 92 ~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~---~---~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~n 163 (475)
++..... ....|.|+|++|++|+. . +....+||||+|.+. |.+..+++|+++.++.|
T Consensus 422 --~p~~~~p-------------~~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~n 486 (567)
T PLN02228 422 --DPCKRLP-------------IKTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWF 486 (567)
T ss_pred --CCccCCC-------------cCceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCC
Confidence 2211110 13469999999999842 1 223458999999985 34556789999999999
Q ss_pred cee-eeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCc--ccceeeeeee
Q psy15955 164 PRW-NETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK--CGELLTSLCY 240 (475)
Q Consensus 164 P~w-~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~--~G~l~l~l~~ 240 (475)
|+| +|+|.|. +.+.+ -..|+|.|+|+|..+.++|+|++++||..|..|- ...+|....+.. .+.|.+.+.+
T Consensus 487 P~W~~e~f~F~-~~~pE--LA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~ 560 (567)
T PLN02228 487 PIWGNDEFLFQ-LRVPE--LALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFAL 560 (567)
T ss_pred ceECCCeEEEE-EEcCc--eeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEE
Confidence 999 9999998 44444 4699999999998888999999999999996543 356776665543 3567776666
Q ss_pred cC
Q psy15955 241 HP 242 (475)
Q Consensus 241 ~~ 242 (475)
.+
T Consensus 561 ~~ 562 (567)
T PLN02228 561 DP 562 (567)
T ss_pred cC
Confidence 54
No 36
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.89 E-value=2.2e-22 Score=169.93 Aligned_cols=122 Identities=34% Similarity=0.631 Sum_probs=110.7
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
.|+|++++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+++ ..++||++++++.||+|||+|.|. ++...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~~ 80 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLEE 80 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHHH
Confidence 699999999999999999999999999999988999999999997654 457899999999999999999999 76666
Q ss_pred cccceEEEEEEeeCCC--CCCccccceeeccccccCCCCcceeeccC
Q psy15955 180 LQSRVLHLHVFDYDRF--SRDDSIGEVFLPLCQVDLSEKPTFWKALK 224 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~--~~~~~iG~~~i~l~~l~~~~~~~~~~~L~ 224 (475)
+....|.|.|||.+.. +++++||++.++|.++..+.....|++|.
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 7778999999999875 68999999999999998888888999884
No 37
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.89 E-value=2e-22 Score=169.08 Aligned_cols=122 Identities=42% Similarity=0.819 Sum_probs=111.9
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ 181 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~ 181 (475)
|+|+++++|+...+.|.|+|++|++|+..+ ..+.+||||+|++.+.+....+|+++++++||+|||+|.|. ++...+.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~-i~~~~l~ 79 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ-VSFKELQ 79 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE-cCHHHhc
Confidence 899999999999999999999999999998 68899999999998766667899999999999999999999 7766666
Q ss_pred cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955 182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP 225 (475)
Q Consensus 182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 225 (475)
...|.|+|||.+..+++++||++.++|+++........|++|.+
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 67899999999998889999999999999999888899999864
No 38
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.89 E-value=1.3e-22 Score=169.20 Aligned_cols=118 Identities=31% Similarity=0.532 Sum_probs=103.3
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEee-cccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV-PWEK 309 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v-~~~~ 309 (475)
.|+|.+++.|. .+.|.|.|++|+||+..+ .+.+||||++++.++.....+++|++++++.||.|||+|.|.+ +..+
T Consensus 1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 38999999999 789999999999999999 8999999999998776656678999999999999999999997 7677
Q ss_pred cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccc
Q psy15955 310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351 (475)
Q Consensus 310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~ 351 (475)
+.+..|.|+|||++.++++++||++.+++.+.........|.
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~ 119 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWY 119 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceE
Confidence 777899999999999999999999999987665443344444
No 39
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.89 E-value=1.3e-22 Score=169.93 Aligned_cols=120 Identities=30% Similarity=0.505 Sum_probs=104.7
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCccccc-CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEK 309 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~ 309 (475)
+|+|++++.|.+..+.|.|.|++|+||+..+. .+.+||||++++.+++....++||++++++.||+|||+|.|.++.++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 49999999999999999999999999998865 57899999999988776566789999999999999999999998888
Q ss_pred cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccc
Q psy15955 310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW 350 (475)
Q Consensus 310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w 350 (475)
+.+..|.|+|||++..+++++||++.+++.+..-......|
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w 121 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEEC 121 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccE
Confidence 87788999999999999999999999988665443333333
No 40
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.89 E-value=1.6e-22 Score=172.41 Aligned_cols=134 Identities=51% Similarity=0.887 Sum_probs=123.2
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR 311 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~ 311 (475)
|+|.++++|.+..+.|.|.|++|++|+..+..+.+||||++++.+.+....+++|++++++.||.|||+|.|.++...+.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 89999999999999999999999999999888899999999998776666678999999999999999999999877766
Q ss_pred cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955 312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL 367 (475)
Q Consensus 312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L 367 (475)
...|.|+|||.+..+++++||.+.+++.+ .+.+..+|.+++..|++.++.||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceEEeeeC
Confidence 67899999999998889999999999988 5678899999999999999999986
No 41
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.89 E-value=8.5e-23 Score=172.84 Aligned_cols=123 Identities=28% Similarity=0.432 Sum_probs=109.3
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
.|+|.+++.|.+..++|.|+|++|++|+..+..+.+||||+|++.+++.. +.||+++++++||+|||+|.|. ++..+
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~~ 79 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAIV 79 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHHH
Confidence 38999999999999999999999999999998899999999999876543 5689999999999999999999 88788
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
+....|+|+|||+|..+++++||++.+.... .+....+|..+....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~ 125 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLASL 125 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHCC
Confidence 8889999999999999999999999997764 455667898886543
No 42
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.89 E-value=2.2e-22 Score=168.86 Aligned_cols=120 Identities=39% Similarity=0.686 Sum_probs=108.9
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
|+|++++.|+...+.|.|+|++|++|+..+ ..+.+||||+|++.+.+. .+.+|++++++.||+|||+|.|. ++..+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHH
Confidence 899999999999999999999999999988 778999999999976543 46799999999999999999998 66666
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL 223 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L 223 (475)
+....|.|+|||++..+++++||++.++|+++..+.....||+|
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 66778999999999999999999999999999888888899986
No 43
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.89 E-value=1.4e-22 Score=177.13 Aligned_cols=137 Identities=31% Similarity=0.493 Sum_probs=118.5
Q ss_pred ccceeeeeeecC------------CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeec
Q psy15955 231 CGELLTSLCYHP------------SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFN 298 (475)
Q Consensus 231 ~G~l~l~l~~~~------------~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~ 298 (475)
+|+|.+++.|.| ..+.|.|+|++|+||+..+..+.+||||++++.+++....+++|++++++.||.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 499999999999 45899999999999999998899999999999776655667899999999999999
Q ss_pred ceEEEee-cccccccceEEEEEEeccCCCCCeeeEEEEEcCcCC-----------CCCcccccccccccCCCcceeeeec
Q psy15955 299 ESFSFNV-PWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG-----------SGASETKHWQDMITKPRQTIVQWHR 366 (475)
Q Consensus 299 e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~-----------~~~~~~~~w~~~~~~p~~~~s~w~~ 366 (475)
|+|.|.+ +.+++.+..|.|+|||++.++++++||++.+++.+. ..+.+..||.+|+.+|...+....+
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~ 160 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP 160 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence 9999984 556666778999999999999999999999999875 3466778888888888887776655
Q ss_pred c
Q psy15955 367 L 367 (475)
Q Consensus 367 L 367 (475)
|
T Consensus 161 ~ 161 (162)
T cd04020 161 L 161 (162)
T ss_pred c
Confidence 4
No 44
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.88 E-value=2e-22 Score=169.17 Aligned_cols=111 Identities=33% Similarity=0.442 Sum_probs=102.3
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEK 309 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~ 309 (475)
.|+|++++.|.+..+.|.|.|++|+||++.+.. |.+||||++++.++.....++||++++++.||+|||+|.|.++..+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence 389999999999999999999999999999875 8999999999988776666789999999999999999999999888
Q ss_pred cccceEEEEEEeccCCCCCeeeEEEEEcCcCC
Q psy15955 310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNG 341 (475)
Q Consensus 310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~ 341 (475)
+.+..|.|+|||++.++++++||++.|++.+.
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~ 112 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADW 112 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCc
Confidence 88889999999999999999999999988654
No 45
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.88 E-value=1.7e-22 Score=170.73 Aligned_cols=122 Identities=26% Similarity=0.421 Sum_probs=107.5
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDM--SGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPI 177 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~ 177 (475)
.|+|.+++.|.+..++|.|.|++|+||+..+. .+.+||||+|++.+++. .+.||+++++++||+|||.|.|. ++.
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~-v~~ 79 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE-LPS 79 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE-CCH
Confidence 38999999999999999999999999999983 34589999999987643 35699999999999999999999 888
Q ss_pred cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP 226 (475)
Q Consensus 178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 226 (475)
.++....|.|+|||+|..+++++||++.+++.. .+....+|..+...
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 888888999999999999999999999999975 45566788887554
No 46
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=9.9e-22 Score=167.26 Aligned_cols=125 Identities=26% Similarity=0.454 Sum_probs=104.7
Q ss_pred CCcccceeeeeeecCCceeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeec
Q psy15955 228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306 (475)
Q Consensus 228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~ 306 (475)
....|+|.+++.| ..+.|.|.|++|+||+..+ ..|.+||||++++.++++...++||+++++++||+|||+|.|.+.
T Consensus 14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence 4567999999999 4689999999999998874 578899999999998877667889999999999999999999997
Q ss_pred ccccccceEEEEEE-eccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCC
Q psy15955 307 WEKIRECSLNVMVM-DFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDH 371 (475)
Q Consensus 307 ~~~l~~~~l~i~V~-d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~ 371 (475)
+.+..|.|+|| |++.++++++||++.|+|.+..- +.....|+.|.++.
T Consensus 92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~--------------~~~~~~Wy~L~~~~ 140 (146)
T cd04028 92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDL--------------SNLVIGWYKLFPTS 140 (146)
T ss_pred ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccC--------------CCCceeEEecCCcc
Confidence 45678999999 68888899999999998865432 22345677776543
No 47
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.87 E-value=7.8e-22 Score=163.54 Aligned_cols=116 Identities=30% Similarity=0.438 Sum_probs=101.0
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL 180 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~ 180 (475)
|+|++++.| ..+.|.|+|++|++|++.+ .+.+||||+|++.|+.. .+.||++++++.||+|||+|.|. ++..++
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~~ 76 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERDY 76 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHHh
Confidence 789999998 7899999999999999998 88999999999987653 35689999999999999999998 665554
Q ss_pred ccceEEEEEEeeCCCC-CCccccceeeccccccCCCCcceeecc
Q psy15955 181 QSRVLHLHVFDYDRFS-RDDSIGEVFLPLCQVDLSEKPTFWKAL 223 (475)
Q Consensus 181 ~~~~L~~~V~d~d~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~L 223 (475)
. ..|.|+|||.+... ++++||++.|+|.++..+.....||.|
T Consensus 77 ~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 77 Q-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred C-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 3 46889999999875 478999999999999877777899976
No 48
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.87 E-value=1e-21 Score=165.29 Aligned_cols=122 Identities=39% Similarity=0.689 Sum_probs=106.0
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
.|+|.+++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+.+ ..+++|++++++.||+|||+|.|..++..+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 599999999999999999999999999999988999999999997643 346789999999999999999998444455
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~ 224 (475)
+....|.|+|||++..+++++||++.++|++.. ......||+|+
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 556789999999999889999999999999943 33457899984
No 49
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=1.4e-21 Score=161.38 Aligned_cols=117 Identities=25% Similarity=0.386 Sum_probs=100.2
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecC-CCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR-TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
|.|.|+|++|++|+..+ .|++||||+|.+ +.++++|+++.+ +.||+|||+|.|. ++ . ....|.|+|||+|.
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l---g~~~~kT~v~~~~~~nP~WNe~F~f~-v~--~-~~~~l~~~V~d~d~ 73 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV---GHAVYETPTAYNGAKNPRWNKTIQCT-LP--E-GVDSIYIEIFDERA 73 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEE---CCEEEEeEEccCCCCCCccCeEEEEE-ec--C-CCcEEEEEEEeCCC
Confidence 67999999999998877 789999999999 556779999876 7999999999998 33 2 23579999999999
Q ss_pred CCCCccccceeeccc-cccCCCCcceeeccCCCCC-Ccccceeeeeee
Q psy15955 195 FSRDDSIGEVFLPLC-QVDLSEKPTFWKALKPPAK-DKCGELLTSLCY 240 (475)
Q Consensus 195 ~~~~~~iG~~~i~l~-~l~~~~~~~~~~~L~~~~~-~~~G~l~l~l~~ 240 (475)
+++|++||.+.++|. .+..+.....|++|.+..+ ...|+|+++++|
T Consensus 74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 74 FTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CcCCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999999999996 5777777899999987543 467999999987
No 50
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.87 E-value=2e-21 Score=163.24 Aligned_cols=121 Identities=37% Similarity=0.633 Sum_probs=108.5
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
.|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.++.+ .+++|++++++.||.|||+|.|.++..++
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 6999999999999999999999999999999889999999999876543 36799999999999999999999987777
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
.+..|.|+|||++.++++++||++.+++.+...+...++|.+|
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 7778999999999999999999999999887666677777765
No 51
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.86 E-value=1.3e-21 Score=167.04 Aligned_cols=125 Identities=34% Similarity=0.581 Sum_probs=109.2
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
+|+|.++++|....+.|.|+|++|++|+..+..|.+||||+|++.+.+. .+.||+++++++||+|+|+|.|. ++...
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHHH
Confidence 5999999999999999999999999999999999999999999976543 25689999999999999999999 67666
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD 229 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~ 229 (475)
+....|.|+|||+|..+++++||++.+++.. .+.....|++|....+.
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~ 127 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRR 127 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCC
Confidence 6667899999999999999999999999988 35566889998655443
No 52
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.86 E-value=3.3e-21 Score=161.89 Aligned_cols=121 Identities=36% Similarity=0.612 Sum_probs=106.0
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
+|+|++++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+++. .+++|++++++.||.|||+|.|.++..++
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 6999999999999999999999999999999999999999999865543 35799999999999999999999988777
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
.+..|.|+|||++.++++++||++.+++.+.........|..+
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 7778999999999999999999999999776654455555443
No 53
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.86 E-value=2e-21 Score=160.13 Aligned_cols=108 Identities=29% Similarity=0.450 Sum_probs=93.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeC----CCCceEEeeeecCCCCceeeeeEEeeccccc-ccccceEEEEEEe
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLP----DKKHRLETKIKRRTLNPRWNETLYFEGFPIQ-KLQSRVLHLHVFD 191 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~----~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~-~~~~~~L~~~V~d 191 (475)
+|.|+|++|++|+..+ .|.+||||+|++.+ ...++++|+++.+++||+|||+|.|. ++.+ .+....|+|.|||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEE
Confidence 4899999999999988 49999999999852 33456799999999999999999999 4432 4566789999999
Q ss_pred eCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955 192 YDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP 226 (475)
Q Consensus 192 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 226 (475)
+|..+++++||++.+|+.++..++....|++|.+.
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 99888899999999999999988888899999754
No 54
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.86 E-value=4e-21 Score=167.99 Aligned_cols=124 Identities=34% Similarity=0.541 Sum_probs=108.5
Q ss_pred ccEEEEEEEEeC------------CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceee
Q psy15955 102 VGQIHFSLEYDF------------DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWN 167 (475)
Q Consensus 102 ~G~i~~~~~~~~------------~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~ 167 (475)
+|+|.+++.|.+ ..+.|.|+|++|++|+..+..+.+||||+|++.+++ ..++||++++++.||+||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 599999999998 458999999999999999988999999999997643 356899999999999999
Q ss_pred eeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955 168 ETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP 225 (475)
Q Consensus 168 e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 225 (475)
|+|.|..++..++....|.|+|||+|.++++++||++.+++.++...+....|+.+..
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9999985555566667899999999999899999999999999987777778887753
No 55
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.86 E-value=2.9e-21 Score=162.61 Aligned_cols=117 Identities=30% Similarity=0.499 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccc---cccccceEEEEEEeeCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI---QKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~---~~~~~~~L~~~V~d~d~ 194 (475)
+.|+|++|++|+..+..|.+||||+|.+ +..+++|+++++++||+|||+|.|. ++. .++....|.|+|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l---~~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL---GKEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE---CCeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccc
Confidence 4799999999999998999999999999 3457899999999999999999998 443 12456789999999999
Q ss_pred CCCCccccceeecccccc--CCCCcceeeccCCCCC---Ccccceeeee
Q psy15955 195 FSRDDSIGEVFLPLCQVD--LSEKPTFWKALKPPAK---DKCGELLTSL 238 (475)
Q Consensus 195 ~~~~~~iG~~~i~l~~l~--~~~~~~~~~~L~~~~~---~~~G~l~l~l 238 (475)
++++++||++.++|+++. .+.....|++|.+..+ +..|+|++++
T Consensus 77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 989999999999999987 4555679999986433 4679998876
No 56
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.86 E-value=6.1e-21 Score=159.46 Aligned_cols=120 Identities=31% Similarity=0.526 Sum_probs=106.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS 196 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 196 (475)
+|.|+|++|++|+..+..+.+||||++.+. +...++|+++.++.||+|||+|.|. +..+ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~---v~~~-~~~l~~~v~D~d~~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLP---IEDV-TQPLYIKVFDYDRGL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEE---ecCC-CCeEEEEEEeCCCCC
Confidence 489999999999999999999999999983 3457899999999999999999998 3333 468999999999998
Q ss_pred CCccccceeeccccccCCCCcceeeccCCCCC-CcccceeeeeeecC
Q psy15955 197 RDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK-DKCGELLTSLCYHP 242 (475)
Q Consensus 197 ~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~-~~~G~l~l~l~~~~ 242 (475)
++++||++.+++.++..+.....|++|.+..+ +..|+|.+.+.+.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999999998888899999987664 67899999999875
No 57
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.85 E-value=6.6e-21 Score=160.82 Aligned_cols=123 Identities=30% Similarity=0.522 Sum_probs=107.0
Q ss_pred cccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccc
Q psy15955 230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEK 309 (475)
Q Consensus 230 ~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~ 309 (475)
+.|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.++..+
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 36999999999999999999999999999999889999999999977665556789999999999999999999998877
Q ss_pred cccceEEEEEEeccCC--CCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955 310 IRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGASETKHWQD 352 (475)
Q Consensus 310 l~~~~l~i~V~d~~~~--~~d~~lG~~~i~l~~~~~~~~~~~w~~ 352 (475)
++...|.|+|||++.. +++++||++.+++.+.........|..
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~ 125 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYD 125 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEE
Confidence 7778899999999875 689999999999877654444444443
No 58
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.85 E-value=3.7e-21 Score=163.66 Aligned_cols=123 Identities=25% Similarity=0.438 Sum_probs=107.5
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC---ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK---HRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~---~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
|+|.+++.|+...++|.|+|++|+||+..+..+.+||||++++.|..+ .++||++++++.||+|||+|.|. ++..+
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~~~ 80 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VALFQ 80 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCHHH
Confidence 789999999999999999999999999999999999999999987543 25699999999999999999999 88888
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
+....|.|+|||++..+++++||++.+++..... ....+|+.+....
T Consensus 81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~ 127 (138)
T cd08408 81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESK 127 (138)
T ss_pred hCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCC
Confidence 8888999999999999999999999998875432 2346898886543
No 59
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.85 E-value=4.3e-21 Score=163.48 Aligned_cols=123 Identities=24% Similarity=0.397 Sum_probs=109.0
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
.|+|++++.|++..++|.|.|++|++|+..+ .+.+||||+|++.+.+. .++||++++++.||+|||+|.|. ++..+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~-i~~~~ 78 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-VTSRQ 78 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-CCHHH
Confidence 4899999999999999999999999999998 78899999999987543 35689999999999999999999 77777
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP 226 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 226 (475)
+....|.|+|||.+..+++++||++.++......+....+|..+...
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 87789999999999989999999999997766666667889888654
No 60
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.85 E-value=1.1e-20 Score=158.61 Aligned_cols=119 Identities=31% Similarity=0.526 Sum_probs=103.4
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
|+|.+++.|.+..+.|.|+|++|+||+..+ ..+.+||||++++.+++....+++|++++++.||.|||+|.|.++..++
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 899999999999999999999999999988 7789999999999766554457899999999999999999999988777
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccc
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW 350 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w 350 (475)
....|.|+|||++..+++++||++.+++.+...+.....|
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w 120 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEW 120 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccE
Confidence 7788999999999999999999999988665433333334
No 61
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.84 E-value=6.8e-21 Score=162.58 Aligned_cols=123 Identities=37% Similarity=0.628 Sum_probs=107.4
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
+|+|.+++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+.+ ....+|++++++.||+|||+|.|. ++.+.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHHH
Confidence 599999999999999999999999999999989999999999986543 235689999999999999999998 67666
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
+....|.|+|||++..+++++||++.+++.+. +.....|+++....
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~ 125 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKP 125 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCC
Confidence 66678999999999999999999999999886 44557888876543
No 62
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.84 E-value=8.4e-21 Score=161.44 Aligned_cols=122 Identities=32% Similarity=0.536 Sum_probs=106.0
Q ss_pred EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ 181 (475)
Q Consensus 104 ~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~ 181 (475)
+|++++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+++ ....+|+++++++||+|||+|.|. ++..++.
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l~ 79 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDLA 79 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHhC
Confidence 4889999999999999999999999999988999999999997653 245799999999999999999998 6666666
Q ss_pred cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCC
Q psy15955 182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK 228 (475)
Q Consensus 182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~ 228 (475)
...|.|+|||+|..+++++||++.+++.. .+.....|+++....+
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD 124 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence 67899999999998899999999999986 3445678998865443
No 63
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.84 E-value=1.2e-20 Score=156.43 Aligned_cols=116 Identities=28% Similarity=0.378 Sum_probs=97.7
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR 311 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~ 311 (475)
|+|+++++| ..+.|.|.|++|+||+..+ .+.+||||++++.++.....+++|++++++.||.|||+|.|.++.+++.
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 788999988 5789999999999999998 8899999999998877666678999999999999999999999877664
Q ss_pred cceEEEEEEeccCCC-CCeeeEEEEEcCcCCCCCccccccc
Q psy15955 312 ECSLNVMVMDFDNIG-RNELIGRILLAGKNGSGASETKHWQ 351 (475)
Q Consensus 312 ~~~l~i~V~d~~~~~-~d~~lG~~~i~l~~~~~~~~~~~w~ 351 (475)
..|.|+|||++... ++++||++.|++.+...++....|+
T Consensus 78 -~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy 117 (119)
T cd08685 78 -KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWY 117 (119)
T ss_pred -CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceE
Confidence 36889999999875 4799999999987655443344443
No 64
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.84 E-value=1.5e-20 Score=158.26 Aligned_cols=121 Identities=31% Similarity=0.577 Sum_probs=103.2
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEE-eeccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSF-NVPWE 308 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f-~v~~~ 308 (475)
.|+|.+++.|.+..+.|.|+|++|+||+..+.. +.+||||++++.++.+ .++||++++++.||.|||+|.| .++..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~--~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC--ceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 699999999999999999999999999998876 8899999999876543 3568999999999999999999 57766
Q ss_pred ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC--Cccccccccc
Q psy15955 309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG--ASETKHWQDM 353 (475)
Q Consensus 309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~--~~~~~~w~~~ 353 (475)
++.+..|.|+|||++.++++++||++.+++.+..- ..++..|..+
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 76667899999999999999999999999976533 2445556543
No 65
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.84 E-value=9.2e-21 Score=161.77 Aligned_cols=122 Identities=38% Similarity=0.661 Sum_probs=106.6
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
.|+|.+++.|....+.|.|+|++|++|+..+..+.+||||+|++.+.+. ..++|+++++++||+|||+|.|. ++...
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~ 79 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFEQ 79 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHHH
Confidence 4899999999999999999999999999999999999999999965432 35689999999999999999999 66666
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP 226 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 226 (475)
+....|.|+|||++.++++++||++.+++... +.....|+++...
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 66678999999999999999999999999764 4555789888654
No 66
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=2.4e-20 Score=160.75 Aligned_cols=124 Identities=27% Similarity=0.429 Sum_probs=104.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecC-CCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR-TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS 196 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 196 (475)
|.|+|++|++|++.+..|.+||||+|.+. .+..+|+++.+ ++||+|||.|.|. +.++....|.|+|||++..+
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~---v~~~~~~~l~v~V~d~~~~~ 75 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFV---AAEPFEDHLILSVEDRVGPN 75 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEE---ecCccCCeEEEEEEEecCCC
Confidence 88999999999999999999999999993 46789998876 6999999999998 33334568999999999888
Q ss_pred CCccccceeeccccccCC----CCcceeeccCCCCC--------CcccceeeeeeecCCceeE
Q psy15955 197 RDDSIGEVFLPLCQVDLS----EKPTFWKALKPPAK--------DKCGELLTSLCYHPSNSVL 247 (475)
Q Consensus 197 ~~~~iG~~~i~l~~l~~~----~~~~~~~~L~~~~~--------~~~G~l~l~l~~~~~~~~L 247 (475)
++++||++.++|.++..+ .....|++|.+..+ +.+|+|+|.+.+.+...++
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~ 138 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVL 138 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEe
Confidence 899999999999998643 34579999987653 4679999999998665544
No 67
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.84 E-value=1.2e-20 Score=160.67 Aligned_cols=122 Identities=34% Similarity=0.574 Sum_probs=105.6
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL 180 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~ 180 (475)
|+|.+++.|....+.|.|+|++|++|++.+..|.+||||+|++.+.+. ...+|+++++++||+|||+|.|. ++...+
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHHh
Confidence 889999999999999999999999999999999999999999965432 35789999999999999999998 666666
Q ss_pred ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
....|.|+|||++..+++++||++.+++. ..+.....|+++....
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~ 124 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANP 124 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCC
Confidence 66679999999999999999999999987 3345567898886543
No 68
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=1.9e-20 Score=157.91 Aligned_cols=121 Identities=27% Similarity=0.390 Sum_probs=101.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccc-ccccccceEEEEEEeeCCC
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP-IQKLQSRVLHLHVFDYDRF 195 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~-~~~~~~~~L~~~V~d~d~~ 195 (475)
+|.|+|++|++|+..+..+.+||||+|++. .+++||+++.+++||+|||.|.|. +. ...+....|.|+|||.+..
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCC
Confidence 489999999999999988999999999984 457799999999999999999998 33 2233346899999999988
Q ss_pred C-CCccccceeecccccc-CCCCcceeeccCCCC--CCcccceeeeeeec
Q psy15955 196 S-RDDSIGEVFLPLCQVD-LSEKPTFWKALKPPA--KDKCGELLTSLCYH 241 (475)
Q Consensus 196 ~-~~~~iG~~~i~l~~l~-~~~~~~~~~~L~~~~--~~~~G~l~l~l~~~ 241 (475)
+ ++++||++.++++++. .+.....|++|.... +..+|+|++++.+.
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 6 7999999999999997 455668999998653 34789999988763
No 69
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.84 E-value=2e-20 Score=156.55 Aligned_cols=110 Identities=30% Similarity=0.491 Sum_probs=99.8
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ecccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPWEK 309 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~~ 309 (475)
.|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.++.+ .+++|+++++ .||+|||+|.|. ++.++
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHHH
Confidence 6999999999999999999999999999999889999999998877643 4678999887 999999999998 88888
Q ss_pred cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
+.+..|.|+|||++.++++++||++.|++.+...
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~ 112 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNL 112 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCC
Confidence 8888999999999999999999999999866543
No 70
>KOG1264|consensus
Probab=99.84 E-value=4.7e-21 Score=192.52 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=154.1
Q ss_pred HHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCC---CCCcccccccccCCCCCCCCcccccccccceeeeEe
Q psy15955 17 RFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSS---SSTPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMYI 93 (475)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~~~ 93 (475)
.+.++-+.||||+|.++||+|++|.+-|...+...+..=.. .++..+..|+.||.|||+++|++|+... .
T Consensus 979 ~ynr~qlSRVYPkGqRldSsNy~P~pmWn~GsqmVALN~QTgDKpMQmNqa~F~~ngrcGYvLqPs~Mrte~-------f 1051 (1267)
T KOG1264|consen 979 KYNRKQLSRVYPKGQRLDSSNYDPFPMWNCGSQMVALNFQTGDKPMQMNQALFSLNGRCGYVLQPSSMRTEK-------F 1051 (1267)
T ss_pred ccccccceeecCCCcccccCCCCCcccccccceeEEeeccCCCchhhhhHHHhhcCCceeeEecchhccccc-------C
Confidence 46788899999999999999999988877666666655444 3455668899999999999999998765 2
Q ss_pred CCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--CCceE-EeeeecCCCCceee-ee
Q psy15955 94 DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRL-ETKIKRRTLNPRWN-ET 169 (475)
Q Consensus 94 ~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~~-kT~v~~~~~nP~w~-e~ 169 (475)
+|..+....|- ..-.|.|.|+.||+|+... .|...|||+|.+.+. +..++ +|.|+.|++||+|| |.
T Consensus 1052 dP~n~e~~~~l---------~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ 1121 (1267)
T KOG1264|consen 1052 DPMNPESQRGL---------LPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEK 1121 (1267)
T ss_pred CCCChHHhccc---------cceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcc
Confidence 44444444443 2346889999999999543 455679999999643 33344 55588999999999 99
Q ss_pred EEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC--cccceeeeeeecCC
Q psy15955 170 LYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD--KCGELLTSLCYHPS 243 (475)
Q Consensus 170 f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~--~~G~l~l~l~~~~~ 243 (475)
|.|+ +..+.-+.|+|.|+|.|+++...|||++++|+..+..|- ...+|++.-.+ ....|.|.+...|.
T Consensus 1122 ftFe---I~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1122 FTFE---IYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred eEEE---eeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccc
Confidence 9999 566677899999999999998899999999999997553 24566553322 23455555555543
No 71
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.84 E-value=1.4e-20 Score=160.03 Aligned_cols=123 Identities=28% Similarity=0.475 Sum_probs=104.7
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL 180 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~ 180 (475)
|+|.+++.|....+.|.|+|++|++|+..+..+.+||||+|++.++.. ..++|+++++++||+|||+|.|. ++..++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHHh
Confidence 899999999999999999999999999999999999999999865432 35789999999999999999999 776677
Q ss_pred ccceEEEEEEeeCCCCCCccccceeeccccccCCC-CcceeeccCCCCC
Q psy15955 181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE-KPTFWKALKPPAK 228 (475)
Q Consensus 181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~~~~~L~~~~~ 228 (475)
....|.|+|||+|..+++++||++.+.. +..+. ...+|+.|.+..+
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~--~~~~~~~~~~W~~l~~~~~ 126 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQ--YSSGPSETNHWRRMLNSQR 126 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcC--ccCCchHHHHHHHHHhCCC
Confidence 6678999999999999999999988665 33333 3478999876544
No 72
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.83 E-value=3e-20 Score=156.40 Aligned_cols=110 Identities=33% Similarity=0.576 Sum_probs=98.4
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEee-cccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV-PWEK 309 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v-~~~~ 309 (475)
.|+|.+++.|.+..+.|.|+|++|++|+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.+ ...+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 499999999999999999999999999999988999999999997655445678999999999999999999985 4455
Q ss_pred cccceEEEEEEeccCCCCCeeeEEEEEcCcC
Q psy15955 310 IRECSLNVMVMDFDNIGRNELIGRILLAGKN 340 (475)
Q Consensus 310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~ 340 (475)
+....|.|+|||++..+++++||++.+++.+
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 6667899999999999999999999999865
No 73
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.83 E-value=9.1e-20 Score=152.85 Aligned_cols=121 Identities=41% Similarity=0.637 Sum_probs=105.3
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
.|+|++++.|+...+.|.|+|++|++|+..+..+.+||||++++.+.. ....+|++++++.||+|||+|.|..++...
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 489999999999999999999999999999988999999999996543 346799999999999999999996444445
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL 223 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L 223 (475)
+....|.|+|||++.. ++++||++.++|+++..++....|+.|
T Consensus 81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 5567899999999988 789999999999999888777777654
No 74
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=5.1e-20 Score=153.40 Aligned_cols=116 Identities=32% Similarity=0.471 Sum_probs=100.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|+|++|++|+..+..+.+||||++++.+.+..++||++++++.||+|||+|.|. +... ....|+|+|||+|.. +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~-~ 77 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV-M 77 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC-C
Confidence 78999999999999988999999999986544567799999999999999999998 4332 345799999999988 8
Q ss_pred CccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeee
Q psy15955 198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCY 240 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~ 240 (475)
+++||++.++++++..+.....|++|.+. ..|+|.+.+.+
T Consensus 78 ~~~iG~~~~~l~~l~~g~~~~~~~~L~~~---~~g~l~~~~~~ 117 (119)
T cd04036 78 DDHLGTVLFDVSKLKLGEKVRVTFSLNPQ---GKEELEVEFLL 117 (119)
T ss_pred CcccEEEEEEHHHCCCCCcEEEEEECCCC---CCceEEEEEEe
Confidence 99999999999999988888999999753 47888887765
No 75
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=3.4e-20 Score=154.34 Aligned_cols=117 Identities=27% Similarity=0.415 Sum_probs=99.8
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeec-CCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR-RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
|.|.|+|++|++|+..+..+.+||||+|++. ....+|+++. ++.||+|||.|.|. ++.. ....|.|+|||++.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~ 74 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDDDK 74 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCC
Confidence 5799999999999999999999999999984 3567898875 57999999999998 4332 35689999999998
Q ss_pred CCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeee
Q psy15955 195 FSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCY 240 (475)
Q Consensus 195 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~ 240 (475)
.+ +++||++.++++++..+.....|++|... ++..|+|.+.+.|
T Consensus 75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~-~~~~G~i~l~l~f 118 (118)
T cd08681 75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTLK-GRYAGEVYLELTF 118 (118)
T ss_pred CC-CcceEEEEEecHHHhhcCCCCCcEEeccC-CcEeeEEEEEEEC
Confidence 76 89999999999998777777899999764 4678999999876
No 76
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=8.1e-20 Score=151.57 Aligned_cols=114 Identities=30% Similarity=0.479 Sum_probs=100.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
+.|.|++|++|+..+..+.+||||++++ ++.+.+|++++++.||.|||+|.|. + .......|.|+|||++..++
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~--~~~~~~~l~v~v~d~~~~~~ 75 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRL---GNEKYKSKVCSKTLNPQWLEQFDLH-L--FDDQSQILEIEVWDKDTGKK 75 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEE---CCEeEecccccCCCCCceeEEEEEE-e--cCCCCCEEEEEEEECCCCCC
Confidence 7899999999999998899999999998 3467899999999999999999998 3 33345789999999999889
Q ss_pred CccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeec
Q psy15955 198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYH 241 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~ 241 (475)
+++||++.++|+++..+.....|++|.+. .|+|++.+.|.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPREQTHSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCCCceEEEEEccCC----CcEEEEEEEec
Confidence 99999999999999988888999999764 59998888764
No 77
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.83 E-value=4.5e-20 Score=153.60 Aligned_cols=120 Identities=19% Similarity=0.360 Sum_probs=101.5
Q ss_pred EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCC-CceeeeeEEeeccccccc
Q psy15955 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTL-NPRWNETLYFEGFPIQKL 180 (475)
Q Consensus 104 ~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~-nP~w~e~f~f~~~~~~~~ 180 (475)
+|.+++.|.+..++|.|.|++|+||++.+..+.+||||+|++.+.++. +.||+++++++ ||+|||+|.|+ ++.++
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~- 79 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQE- 79 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCchh-
Confidence 689999999999999999999999999866677899999999765543 57899999996 69999999999 77765
Q ss_pred ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955 181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP 226 (475)
Q Consensus 181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 226 (475)
....|.|+|||++..+++++||++.++..+. .+....+|.++...
T Consensus 80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~ 124 (135)
T cd08692 80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIAN 124 (135)
T ss_pred heeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhC
Confidence 3578999999999999999999999999874 33345788887543
No 78
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.82 E-value=8.2e-20 Score=153.67 Aligned_cols=121 Identities=38% Similarity=0.647 Sum_probs=102.8
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ecccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPWEK 309 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~~ 309 (475)
.|+|++++.|.+....|.|.|++|+||+..+..+.+||||++++.+++. .+++|++++++.||.|||+|.|. ++.+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHHH
Confidence 5999999999999999999999999999999889999999999865433 35799999999999999999998 45555
Q ss_pred cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
+.+..|.|+|||++..+++++||++.+++.+...+.....|.++
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 66678999999999999999999999998776554444555443
No 79
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.82 E-value=1.1e-19 Score=154.29 Aligned_cols=113 Identities=32% Similarity=0.555 Sum_probs=98.9
Q ss_pred cccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC----CceEEeeeecCCCCceeeeeEEeeccc
Q psy15955 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK----KHRLETKIKRRTLNPRWNETLYFEGFP 176 (475)
Q Consensus 101 ~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~~kT~v~~~~~nP~w~e~f~f~~~~ 176 (475)
.+|+|.++++|+...+.|.|+|++|++|+..+..+.+||||+|++.+.. ...+||+++++++||+|||+|.|. +.
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~ 79 (133)
T cd04009 1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-VP 79 (133)
T ss_pred CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-ec
Confidence 3699999999999999999999999999999988999999999997543 346899999999999999999998 44
Q ss_pred ccc--cccceEEEEEEeeCCCCCCccccceeeccccccCC
Q psy15955 177 IQK--LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214 (475)
Q Consensus 177 ~~~--~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~ 214 (475)
... +....|.|+|||++..+++++||++.++|+++..-
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 322 23568999999999998899999999999999643
No 80
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.82 E-value=9e-20 Score=152.89 Aligned_cols=116 Identities=31% Similarity=0.563 Sum_probs=99.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS 196 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 196 (475)
+|.|+|++|++|+..+..+.+||||+|++ +....+|++++++.||+|||+|.|. + .......|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~--~~~~~~~l~~~v~d~~~~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFE-L--MEGADSPLSVEVWDWDLVS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEE---CCEEEeceeecCCCCCccCcEEEEE-c--CCCCCCEEEEEEEECCCCC
Confidence 48999999999999998889999999998 3456799999999999999999998 3 3333568999999999998
Q ss_pred CCccccceeeccccccCCCCcceeeccCCC------CCCcccceeeee
Q psy15955 197 RDDSIGEVFLPLCQVDLSEKPTFWKALKPP------AKDKCGELLTSL 238 (475)
Q Consensus 197 ~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~------~~~~~G~l~l~l 238 (475)
++++||++.++|.++..+.....|+.|.+. .++..|.|.+.+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999999877777899999873 345667777765
No 81
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.82 E-value=1.1e-19 Score=151.31 Aligned_cols=117 Identities=27% Similarity=0.426 Sum_probs=99.3
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955 118 LILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS 196 (475)
Q Consensus 118 L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 196 (475)
|.|.|++|++|+..+ ..|.+||||+|.+. +...++|+++++++||+|||+|.|. ++.. ...|.|.|||++..+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCC
Confidence 679999999999874 45789999999983 4346899999999999999999999 4422 358999999999999
Q ss_pred CCccccceeeccccccCCCCcceeeccCCCC--CCcccceeeeeee
Q psy15955 197 RDDSIGEVFLPLCQVDLSEKPTFWKALKPPA--KDKCGELLTSLCY 240 (475)
Q Consensus 197 ~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~G~l~l~l~~ 240 (475)
++++||.+.++++++..+.....|++|.+.. ++.+|+|++++++
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 9999999999999998877778999998742 3468999988764
No 82
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.82 E-value=8e-20 Score=155.76 Aligned_cols=122 Identities=35% Similarity=0.575 Sum_probs=107.8
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL 180 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~ 180 (475)
|+|++++.|+...++|.|.|++|++|+..+..+.+||||++++.+.+. ..++|+++.++.||.|||+|.|. ++...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHHh
Confidence 899999999999999999999999999999888999999999976543 35689999999999999999999 666655
Q ss_pred ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
....|.|+|||.+..+++++||++.+++++ .+.....|++|....
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 567899999999988889999999999999 566678999997654
No 83
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.82 E-value=7e-20 Score=156.94 Aligned_cols=109 Identities=31% Similarity=0.532 Sum_probs=92.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecc------------ccccccc
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGF------------PIQKLQS 182 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~------------~~~~~~~ 182 (475)
+|.|+|++|++|+. ..|.+||||+|++.+.. .++.+|+++++++||+|||+|.|.+- +..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999998 56899999999997542 24678999999999999999999831 3334455
Q ss_pred ceEEEEEEeeCCCCCCccccceeeccccccCC-CCcceeeccCCCC
Q psy15955 183 RVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS-EKPTFWKALKPPA 227 (475)
Q Consensus 183 ~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~~~~~L~~~~ 227 (475)
..|.|.|||++..++++|||++.|+|.++..+ .....||+|.+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 68999999999888999999999999999877 5678999998754
No 84
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=7.5e-20 Score=152.14 Aligned_cols=112 Identities=28% Similarity=0.366 Sum_probs=95.6
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 118 LILRVISAKE---LPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 118 L~v~v~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
|.|+|++|++ |+.+|..|.+||||+|.+ +.++.||+++.+++||+|||+|.|. +... ...|.|+|||++.
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~---g~~~~rTk~~~~~~nP~WnE~f~f~---v~~~-~~~l~v~V~d~d~ 74 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY---GPKWVRTRTVEDSSNPRWNEQYTWP---VYDP-CTVLTVGVFDNSQ 74 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEE---CCEEeEcCcccCCCCCcceeEEEEE---ecCC-CCEEEEEEEECCC
Confidence 8999999999 889999999999999998 5567899999999999999999998 3332 3489999999998
Q ss_pred CC------CCccccceeeccccccCCCCcceeeccCCCC---CCcccceee
Q psy15955 195 FS------RDDSIGEVFLPLCQVDLSEKPTFWKALKPPA---KDKCGELLT 236 (475)
Q Consensus 195 ~~------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~---~~~~G~l~l 236 (475)
.+ +|++||++.++|.++..+.....|++|.... .+..|+|..
T Consensus 75 ~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 75 SHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 73 8999999999999998888888999998543 345676653
No 85
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.82 E-value=1.6e-19 Score=151.53 Aligned_cols=119 Identities=31% Similarity=0.521 Sum_probs=103.0
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
|+|.+++.|.+..+.|.|.|++|++|+..+ ..+.+||||++++.+++. ..++|++++++.||+|||+|.|.++..++
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~--~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER--RSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC--CceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 899999999999999999999999999998 688899999999876543 34689999999999999999999987777
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD 352 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~ 352 (475)
....|.|+|||++..+++++||++.+++.+.........|.+
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~ 120 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRD 120 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEe
Confidence 667899999999998889999999999876655444445544
No 86
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=2.7e-19 Score=150.51 Aligned_cols=120 Identities=20% Similarity=0.400 Sum_probs=102.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|+|++|++|+. ..|.+||||++++. ....+++|+++.++.||+|||.|.|. +.. ....|.|+|||++..++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~~~v~d~~~~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFE-LSP---NSKELLFEVYDNGKKSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEE-eCC---CCCEEEEEEEECCCCCC
Confidence 5799999999998 67899999999984 22356899999999999999999998 432 24679999999999888
Q ss_pred CccccceeeccccccCCCCcceeeccCCCC---CCcccceeeeeeecCCc
Q psy15955 198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPA---KDKCGELLTSLCYHPSN 244 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~---~~~~G~l~l~l~~~~~~ 244 (475)
+++||++.+++.++........|++|.+.. ....|+|.+.+.|.+..
T Consensus 74 ~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 74 SKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 999999999999998888788999998763 45789999999997654
No 87
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.80 E-value=3.8e-19 Score=150.30 Aligned_cols=119 Identities=34% Similarity=0.535 Sum_probs=100.8
Q ss_pred CEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955 116 STLILRVISAKELPAKDM--SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD 193 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d 193 (475)
|.|.|.|++|++|+..+. .+.+||||+|.+ +...++|++++++.||+|||.|.|. +..+....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~---~~~~~kT~~~~~t~~P~Wne~f~~~---~~~~~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFP---IFSAQNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE---CCEEEecceecCCcCCccCCcEEEE---ecCCCCCEEEEEEEECC
Confidence 568999999999999988 889999999998 4467899999999999999999998 33344678999999999
Q ss_pred CCCCCccccceeeccccccC---CCCcceeeccCCCCC----Ccccceeeeeee
Q psy15955 194 RFSRDDSIGEVFLPLCQVDL---SEKPTFWKALKPPAK----DKCGELLTSLCY 240 (475)
Q Consensus 194 ~~~~~~~iG~~~i~l~~l~~---~~~~~~~~~L~~~~~----~~~G~l~l~l~~ 240 (475)
..+++++||++.++|.++.. ......|++|.+... ...|+|++.+.+
T Consensus 75 ~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 75 RFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 98889999999999999873 344578999987632 368999988764
No 88
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=2.5e-19 Score=149.18 Aligned_cols=112 Identities=34% Similarity=0.550 Sum_probs=95.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|+|++|++|+.. .+||||+|++. ..+.+|++++++.||+|||+|.|. ...+....|.|+|||+|.. +
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~---~~~~~~~~L~~~v~d~d~~-~ 70 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFS---KDRLQGSTLEVSVWDKDKA-K 70 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEE---cCCCcCCEEEEEEEeCCCC-c
Confidence 88999999999987 68999999984 357799999999999999999998 4444567899999999976 7
Q ss_pred CccccceeeccccccCCC-----CcceeeccCCCCC-Ccccceeeeeee
Q psy15955 198 DDSIGEVFLPLCQVDLSE-----KPTFWKALKPPAK-DKCGELLTSLCY 240 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~~~-~~~G~l~l~l~~ 240 (475)
+++||++.++++++.... ....|++|.+..+ +.+|+|++++.|
T Consensus 71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 899999999999986543 2468999987653 678999999877
No 89
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=4.5e-19 Score=148.93 Aligned_cols=119 Identities=24% Similarity=0.414 Sum_probs=98.8
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF 195 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~ 195 (475)
..|.|+|++|++|+.. +.+||||+|.+. +.+..+|+++ ++.||.|||+|.|.. ... ....+.|.|||++..
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~~-~~~--~~~~l~v~v~d~~~~ 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFDD-LPP--DVNSFTISLSNKAKR 74 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEec-CCC--CcCEEEEEEEECCCC
Confidence 4699999999999975 468999999993 3345689875 689999999999973 222 224688999999999
Q ss_pred CCCccccceeeccccccCCCCcceeeccCCCC---CCcccceeeeeeecCC
Q psy15955 196 SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA---KDKCGELLTSLCYHPS 243 (475)
Q Consensus 196 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~---~~~~G~l~l~l~~~~~ 243 (475)
+++++||++.+||+++..+.....|++|.+.. ....|+|++++.|.+.
T Consensus 75 ~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 75 SKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 99999999999999998888888999998764 3567999999999753
No 90
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=3.5e-19 Score=151.24 Aligned_cols=118 Identities=29% Similarity=0.483 Sum_probs=98.2
Q ss_pred CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD 193 (475)
Q Consensus 114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d 193 (475)
..|.|.|+|++|++|+..+..|.+||||++++ +...++|+++++++||.|||+|.|. +.++....|.|+|||+|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~---~~~~~kT~vi~~t~nP~Wne~f~f~---v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM---GSQEHKTKVVSDTLNPKWNSSMQFF---VKDLEQDVLCITVFDRD 86 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE---CCEeeeccccCCCCCCccCceEEEE---ecCccCCEEEEEEEECC
Confidence 35679999999999999999999999999998 4567899999999999999999998 33445678999999999
Q ss_pred CCCCCccccceeeccccccCCC-----CcceeeccCCCCCCcccceeeeeee
Q psy15955 194 RFSRDDSIGEVFLPLCQVDLSE-----KPTFWKALKPPAKDKCGELLTSLCY 240 (475)
Q Consensus 194 ~~~~~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~G~l~l~l~~ 240 (475)
..++|++||++.++|.++.... ....|..+ .+...|+|++++.+
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 9989999999999999987521 12234444 35678999998875
No 91
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.80 E-value=3.2e-19 Score=146.49 Aligned_cols=106 Identities=30% Similarity=0.547 Sum_probs=90.1
Q ss_pred CEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEeeC
Q psy15955 116 STLILRVISAKELPAKDMS-GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDYD 193 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~d 193 (475)
|.|.|+|++|++|+..+.. +.+||||+|++.+.+...++|+++++++||+|||+|.|. +...++ ....|.|+|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCC
Confidence 5799999999999999988 899999999996655567899999999999999999997 333222 3468999999999
Q ss_pred CCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955 194 RFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP 225 (475)
Q Consensus 194 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 225 (475)
..+++++||++.+++.++. ....|++++.
T Consensus 80 ~~~~dd~lG~~~i~l~~l~---~~~~~~~~~~ 108 (111)
T cd04041 80 RFTADDRLGRVEIDLKELI---EDRNWMGRRE 108 (111)
T ss_pred CCCCCCcceEEEEEHHHHh---cCCCCCcccc
Confidence 9999999999999999997 3456888753
No 92
>KOG1030|consensus
Probab=99.79 E-value=3.3e-19 Score=150.10 Aligned_cols=96 Identities=38% Similarity=0.631 Sum_probs=86.2
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
.|-|.|.|++|.+|..+|..+++||||++.+ ++++.||+++++++||+|||+|.|. +.++ ...|+++|||+|.
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l---g~q~lkT~~v~~n~NPeWNe~ltf~---v~d~-~~~lkv~VyD~D~ 77 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL---GNQKLKTRVVYKNLNPEWNEELTFT---VKDP-NTPLKVTVYDKDT 77 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEE---CCeeeeeeeecCCCCCcccceEEEE---ecCC-CceEEEEEEeCCC
Confidence 4579999999999999998899999999999 6778899999999999999999998 4453 4689999999999
Q ss_pred CCCCccccceeeccccccCCCCc
Q psy15955 195 FSRDDSIGEVFLPLCQVDLSEKP 217 (475)
Q Consensus 195 ~~~~~~iG~~~i~l~~l~~~~~~ 217 (475)
++.||+||.++|+|..+......
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred CCcccccceeeeccHHHHHHhhh
Confidence 99999999999999998765543
No 93
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=9.7e-19 Score=148.80 Aligned_cols=119 Identities=34% Similarity=0.578 Sum_probs=100.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC----CceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDK----KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD 193 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d 193 (475)
|.|+|++|++|+..+..+.+||||+|++.+.. ....+|+++++++||+|||+|.|. +.. ....|.|+|||++
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~~~v~d~~ 77 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNP---REHRLLFEVFDEN 77 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcC---CCCEEEEEEEECC
Confidence 88999999999999988999999999996431 124689999999999999999998 332 2357999999999
Q ss_pred CCCCCccccceeeccccccCCCC------cceeeccCCCC--CCcccceeeeeee
Q psy15955 194 RFSRDDSIGEVFLPLCQVDLSEK------PTFWKALKPPA--KDKCGELLTSLCY 240 (475)
Q Consensus 194 ~~~~~~~iG~~~i~l~~l~~~~~------~~~~~~L~~~~--~~~~G~l~l~l~~ 240 (475)
..+++++||++.+++.++..+.. ...|++|.+.. ++..|+|++++.|
T Consensus 78 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 99999999999999999976543 35899998653 4578999999987
No 94
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=7.3e-19 Score=144.92 Aligned_cols=97 Identities=25% Similarity=0.312 Sum_probs=80.9
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEe--CceeeeeeecccccCCCCCeecceEEEeeccc-ccccceEEEEEEec
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQF--GEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE-KIRECSLNVMVMDF 322 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~--~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~l~~~~l~i~V~d~ 322 (475)
.|.|+|++|++|+..+ .|.+||||+|++.. .+....+++|+++.+++||+|||+|.|.++.+ .+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4889999999999887 48999999999853 22333467899999999999999999999754 45567899999999
Q ss_pred cCCCCCeeeEEEEEcCcCCCC
Q psy15955 323 DNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 323 ~~~~~d~~lG~~~i~l~~~~~ 343 (475)
+..+++++||++.+++.+...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~ 100 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQ 100 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcC
Confidence 988889999999998865443
No 95
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.78 E-value=1.8e-18 Score=146.62 Aligned_cols=121 Identities=33% Similarity=0.543 Sum_probs=103.7
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK 179 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~ 179 (475)
+|+|.++++|.. +.|.|+|++|++|+..+..+.+||||+|.+.+.+ ...++|+++.++.||.|||+|.|. +...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~ 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh
Confidence 599999999965 9999999999999999888899999999996432 356899999999999999999998 43322
Q ss_pred cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
....|.|+|||++..+++++||++.++|+++... ....|++|.+..
T Consensus 78 -~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 78 -KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred -cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 2468999999999888899999999999999754 668899997643
No 96
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.78 E-value=7.7e-19 Score=143.98 Aligned_cols=104 Identities=32% Similarity=0.570 Sum_probs=90.6
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCCCceEEeeeecCCCCcee-eeeEEeecccccccccceEEEEEEeeCCC
Q psy15955 118 LILRVISAKELPAKDM-SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRW-NETLYFEGFPIQKLQSRVLHLHVFDYDRF 195 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w-~e~f~f~~~~~~~~~~~~L~~~V~d~d~~ 195 (475)
|.|+|++|++|+..+. .+.+||||+|++. ..++||+++++++||+| ||+|.|. ++...+....|.|+|||++..
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCC
Confidence 5799999999999884 6889999999994 36789999999999999 9999998 666555567899999999999
Q ss_pred CCCccccceeeccccccC---CCCcceeeccCC
Q psy15955 196 SRDDSIGEVFLPLCQVDL---SEKPTFWKALKP 225 (475)
Q Consensus 196 ~~~~~iG~~~i~l~~l~~---~~~~~~~~~L~~ 225 (475)
+++++||++.+++.++.. ......||+|..
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999999999977 344678999864
No 97
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.78 E-value=1.3e-18 Score=145.44 Aligned_cols=115 Identities=32% Similarity=0.511 Sum_probs=98.1
Q ss_pred CEEEEEEEEeecCCCCCC------CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEE
Q psy15955 116 STLILRVISAKELPAKDM------SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHV 189 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V 189 (475)
|.|.|+|++|++|+..+. .+.+||||+|++. .+.++|++++++.||+|||.|.|. + .......|.|+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~-v--~~~~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAV-V--DEVPGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEE-e--CCCCCCEEEEEE
Confidence 468999999999998875 3689999999993 367899999999999999999987 3 333457899999
Q ss_pred EeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeee
Q psy15955 190 FDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCY 240 (475)
Q Consensus 190 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~ 240 (475)
||++.. ++++||.+.++++++..++....|++|.+. ..|+|++.+++
T Consensus 75 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~~~~~~~~ 121 (121)
T cd08391 75 FDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV---KSGRLHLKLEW 121 (121)
T ss_pred EecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC---CCceEEEEEeC
Confidence 999987 889999999999999887777899999753 67999888764
No 98
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=1.6e-18 Score=145.61 Aligned_cols=121 Identities=31% Similarity=0.472 Sum_probs=100.7
Q ss_pred CEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 116 STLILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
|.|.|+|++|++|+..+ ..+.+||||+|.+.+. ...++|+++.++.||.|||.|.|. +. .....|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~-v~---~~~~~l~~~v~d~~~ 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYIL-VN---SLTEPLNLTVYDFND 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEE-eC---CCCCEEEEEEEecCC
Confidence 56999999999999765 3467999999999532 357899999999999999999998 43 235789999999999
Q ss_pred CCCCccccceeeccccccCCCCcc-eeeccCCCCCCcccceeeeeeecC
Q psy15955 195 FSRDDSIGEVFLPLCQVDLSEKPT-FWKALKPPAKDKCGELLTSLCYHP 242 (475)
Q Consensus 195 ~~~~~~iG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~G~l~l~l~~~~ 242 (475)
.+++++||.+.++|.++....... .|+.+. ..++..|+|+++++|.|
T Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCceeEEEEEEHHHhccCccccCcchhhh-cCCccceEEEEEEEeCC
Confidence 888999999999999998776654 345554 46678899999999976
No 99
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.78 E-value=2.4e-18 Score=146.48 Aligned_cols=122 Identities=29% Similarity=0.546 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccc----cc--ccceEEEEEE
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQ----KL--QSRVLHLHVF 190 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~----~~--~~~~L~~~V~ 190 (475)
+|+|+|++|++|+..+..|.+||||+|++. ..+.+|+++++++||+|||.|.|....+. .+ ....|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999983 45789999999999999999999732221 11 1246999999
Q ss_pred eeCCCCCCccccceee-ccccccC---CCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955 191 DYDRFSRDDSIGEVFL-PLCQVDL---SEKPTFWKALKPPAKDKCGELLTSLCYHP 242 (475)
Q Consensus 191 d~d~~~~~~~iG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~~~G~l~l~l~~~~ 242 (475)
|+|..+++++||++.+ |+..+.. +.....|++|.. .+...|+|++++++.+
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~~~~~Geil~~~~~~~ 133 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-GGQSAGELLAAFELIE 133 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-CCCchhheeEEeEEEE
Confidence 9999999999999986 5544432 345579999974 3568999999998864
No 100
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.78 E-value=2.1e-18 Score=146.37 Aligned_cols=112 Identities=38% Similarity=0.532 Sum_probs=97.6
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCce--eeeeeecccccCCCCCeecceEEEeeccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK--RIEKRKTQIFKCNLNPVFNESFSFNVPWE 308 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~~~~T~~~~~t~nP~w~e~f~f~v~~~ 308 (475)
.|+|.+++.|.+....|.|.|++|++|+..+..+.+||||+|++.+... ...+++|++++++.||+|||+|.|.+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 5999999999999999999999999999999889999999999865432 24578999999999999999999998753
Q ss_pred c--cccceEEEEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955 309 K--IRECSLNVMVMDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 309 ~--l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
+ +.+..|.|+|||++..+++++||++.+++.+..
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 2 345689999999999999999999999886544
No 101
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=2.8e-18 Score=149.54 Aligned_cols=121 Identities=24% Similarity=0.344 Sum_probs=100.4
Q ss_pred CCCEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEeCCCCceEEeeeecCCCC
Q psy15955 114 DNSTLILRVISAKELPAKD------------------------------MSGTSDPYVKVALLPDKKHRLETKIKRRTLN 163 (475)
Q Consensus 114 ~~~~L~v~v~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~n 163 (475)
-+|.|.|+|++|++|+.+| ..|.+||||+|++. +.+..||++++++.|
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~n 82 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSEN 82 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCC
Confidence 4678999999999999987 24678999999993 334569999999999
Q ss_pred ceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCC---Ccccceeeeeee
Q psy15955 164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK---DKCGELLTSLCY 240 (475)
Q Consensus 164 P~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~---~~~G~l~l~l~~ 240 (475)
|+|||+|.|. + ... ...|.|.|||+|..+ +++||.+.+|++++..+.....|++|....+ ...|+|++++.|
T Consensus 83 P~WnE~F~~~-~--~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 83 PVWNESFHIY-C--AHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred CccceEEEEE-c--cCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999999987 3 332 357999999999875 5899999999999988888889999987543 346899999887
Q ss_pred c
Q psy15955 241 H 241 (475)
Q Consensus 241 ~ 241 (475)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
No 102
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=3e-18 Score=143.00 Aligned_cols=116 Identities=33% Similarity=0.511 Sum_probs=97.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|+|++|++|++.+..|.+||||+|.+. +....||+++.+++||+|||.|.|. ++ . ....|.|+|||++..++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~-~~--~-~~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVH-LP--P-GFHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEe-eC--C-CCCEEEEEEEECCCCCC
Confidence 78999999999999999999999999983 3345799999999999999999998 33 2 23689999999999999
Q ss_pred CccccceeeccccccCC-CCcceeeccCCC--CCCcccceeeeee
Q psy15955 198 DDSIGEVFLPLCQVDLS-EKPTFWKALKPP--AKDKCGELLTSLC 239 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~-~~~~~~~~L~~~--~~~~~G~l~l~l~ 239 (475)
+++||++.+++.++... .....|++|.+. .+...|+|++.+.
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999999988754 336789999763 3456799988764
No 103
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=2.7e-18 Score=144.72 Aligned_cols=118 Identities=24% Similarity=0.392 Sum_probs=100.5
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccc
Q psy15955 122 VISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSI 201 (475)
Q Consensus 122 v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~i 201 (475)
|++|++|+. ..+.+||||+|++ +..+++|++++++.||+|||+|.|. +.........|.|+|||++..+++++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~---~~~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTF---RGVKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLI 75 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEE---CCEeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceE
Confidence 689999999 6789999999998 3456799999999999999999998 332223467899999999998899999
Q ss_pred cceeeccccccCCCCcceeeccCCCCCC-cccceeeeeeecCCce
Q psy15955 202 GEVFLPLCQVDLSEKPTFWKALKPPAKD-KCGELLTSLCYHPSNS 245 (475)
Q Consensus 202 G~~~i~l~~l~~~~~~~~~~~L~~~~~~-~~G~l~l~l~~~~~~~ 245 (475)
|++.++|.++..+.....|++|.+..+. ..|+|.++++|.|..+
T Consensus 76 G~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 76 GSATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 9999999999988888899999865544 5799999999988654
No 104
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=5.2e-18 Score=141.40 Aligned_cols=116 Identities=33% Similarity=0.568 Sum_probs=98.7
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF 195 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~ 195 (475)
|.|.|+|++|++|+..+..+.+||||+|++. ...++|++++++.||.|+|+|.|. +.++ ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~---~~~~-~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFP---IKDI-HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEE---ecCc-CCEEEEEEEECCCC
Confidence 4689999999999999999999999999983 345799999999999999999998 3332 46899999999988
Q ss_pred CCCccccceeeccccccCCCCcceeeccCCCC--CCcccceeeeeee
Q psy15955 196 SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA--KDKCGELLTSLCY 240 (475)
Q Consensus 196 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~G~l~l~l~~ 240 (475)
+++++||++.+++.++..+ ...|+.|.+.. ....|+|.+++.+
T Consensus 74 ~~~~~iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCCceeeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 8899999999999998654 35799997654 3468999998875
No 105
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=4.4e-18 Score=142.65 Aligned_cols=113 Identities=35% Similarity=0.534 Sum_probs=98.5
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ecccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPWEK 309 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~~ 309 (475)
.|+|.+++.|.+..+.|.|+|++|++|+..+..+.+||||++++.++.....+++|++++++.||.|||+|.|. +...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 38999999999999999999999999999988889999999998765544567899999999999999999996 55455
Q ss_pred cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCC
Q psy15955 310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGA 344 (475)
Q Consensus 310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~ 344 (475)
+.+..|.|+|||++.. ++++||++.+++.++...
T Consensus 81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence 5556899999999988 899999999988765543
No 106
>KOG0696|consensus
Probab=99.76 E-value=5.8e-19 Score=167.20 Aligned_cols=126 Identities=33% Similarity=0.567 Sum_probs=109.0
Q ss_pred CCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEe
Q psy15955 95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYF 172 (475)
Q Consensus 95 ~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f 172 (475)
..+..+.+|+|.+.++. ....|.|.|.+|+||.++|.+|.+||||++.+.|+.+ .++||++++.++||+|||+|.|
T Consensus 161 G~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf 238 (683)
T KOG0696|consen 161 GTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTF 238 (683)
T ss_pred CCcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEE
Confidence 45667889999988887 7889999999999999999999999999999988754 3579999999999999999999
Q ss_pred ecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955 173 EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP 225 (475)
Q Consensus 173 ~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 225 (475)
. +...+ ..+.|.|+|||||+.+++||+|..++.+++|... ....||.|..
T Consensus 239 ~-Lkp~D-kdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 239 K-LKPSD-KDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred e-ccccc-ccceeEEEEecccccccccccceecccHHHHhhc-chhhHHHHhh
Confidence 9 43333 3578999999999999999999999999999654 3478988864
No 107
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=8.1e-18 Score=141.70 Aligned_cols=118 Identities=27% Similarity=0.434 Sum_probs=98.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS 196 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 196 (475)
.|.|+|++|++|+..+..+.+||||+|.+.+.+...+||+++++++||.|||+|.|. +... ....|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCCCC
Confidence 589999999999999999999999999975443456799999999999999999998 3332 3568999999999988
Q ss_pred CCccccceeeccccccCC---CCcceeeccCCCCCCcccceeeeeeecC
Q psy15955 197 RDDSIGEVFLPLCQVDLS---EKPTFWKALKPPAKDKCGELLTSLCYHP 242 (475)
Q Consensus 197 ~~~~iG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~G~l~l~l~~~~ 242 (475)
++++||++.++|+++... .....|++|.+ .|+|++.+.+..
T Consensus 79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-----~g~i~l~~~~~~ 122 (126)
T cd04043 79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-----QGRLLLRVSMEG 122 (126)
T ss_pred CCceEEEEEEecCHHHcCCCCCCceEEEEcCC-----CCeEEEEEEEee
Confidence 899999999999886443 34578999975 488888877753
No 108
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.76 E-value=8.6e-18 Score=144.10 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=101.0
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE-eC-CCCceEEeeeecCCCCceeeeeEEeeccccc------ccccceEEE
Q psy15955 118 LILRVISAKE--LPAKDMSGTSDPYVKVAL-LP-DKKHRLETKIKRRTLNPRWNETLYFEGFPIQ------KLQSRVLHL 187 (475)
Q Consensus 118 L~v~v~~a~~--L~~~~~~~~~dpyv~v~l-~~-~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~------~~~~~~L~~ 187 (475)
..++|+.|++ |+..+..+.+||||++++ .| .+.++.||+++++|+||+|||+|.|. ++.. .+....|.|
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEE
Confidence 4556666666 677777788999999997 34 45568899999999999999999998 5543 244567999
Q ss_pred EEEeeCCC-CCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955 188 HVFDYDRF-SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHP 242 (475)
Q Consensus 188 ~V~d~d~~-~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~ 242 (475)
+|||.+.+ .+|++||++.++|+.+........|++|........|+|++.+..-.
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 99999986 57999999999999998877777899998766677889988887654
No 109
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.75 E-value=6.9e-18 Score=141.21 Aligned_cols=114 Identities=24% Similarity=0.398 Sum_probs=94.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|+|+|++|++|+..+..+.+||||++++. +.+.++|+++++++||.|||+|.|. ++ . ...|.|+|||++..++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~-~~--~--~~~l~i~V~d~~~~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLT-VG--P--SSIITIQVFDQKKFKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEE-eC--C--CCEEEEEEEECCCCCC
Confidence 78999999999999999999999999983 3567899999999999999999998 33 2 5689999999998765
Q ss_pred --CccccceeeccccccCCCC-cceeeccCCCCC----Ccccceeeee
Q psy15955 198 --DDSIGEVFLPLCQVDLSEK-PTFWKALKPPAK----DKCGELLTSL 238 (475)
Q Consensus 198 --~~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~----~~~G~l~l~l 238 (475)
+++||++.+++.++..... ...|++|..... ...|+|.+.+
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 5899999999999865543 367999965442 3467777654
No 110
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=5.9e-18 Score=137.54 Aligned_cols=100 Identities=28% Similarity=0.408 Sum_probs=86.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|+|++|++|+..+..+.+||||+|++. ++.++|+++.++.||+|||+|.|. +..+....|.|+|||.+.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~---v~~~~~~~l~v~v~d~~~--- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFL---VRNPENQELEIEVKDDKT--- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEE---eCCCCCCEEEEEEEECCC---
Confidence 78999999999999988999999999993 367899999999999999999998 333445689999999886
Q ss_pred CccccceeeccccccCCC--CcceeeccCCC
Q psy15955 198 DDSIGEVFLPLCQVDLSE--KPTFWKALKPP 226 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~--~~~~~~~L~~~ 226 (475)
+++||++.++|.++.... ....|++|.+.
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 789999999999997654 45789999754
No 111
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.75 E-value=8.3e-18 Score=141.49 Aligned_cols=106 Identities=25% Similarity=0.447 Sum_probs=85.9
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc---cccccceEEEEEEecc
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW---EKIRECSLNVMVMDFD 323 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~l~~~~l~i~V~d~~ 323 (475)
++|+|++|+||+..+..|.+||||++++. ..+++|++++++.||+|||+|.|.++. .++....|.|+|||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~ 75 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN 75 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence 47999999999999999999999999873 235689999999999999999999875 2344568999999999
Q ss_pred CCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955 324 NIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP 369 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~ 369 (475)
.+++|++||++.|++.+.. ..++.....|++|..
T Consensus 76 ~~~~d~~iG~~~i~l~~l~------------~~~~~~~~~W~~L~~ 109 (126)
T cd08682 76 LLGLDKFLGQVSIPLNDLD------------EDKGRRRTRWFKLES 109 (126)
T ss_pred ccCCCceeEEEEEEHHHhh------------ccCCCcccEEEECcC
Confidence 9999999999999885432 122344567777764
No 112
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.74 E-value=1.1e-17 Score=143.40 Aligned_cols=96 Identities=25% Similarity=0.414 Sum_probs=81.2
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeec-------------cccccc
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP-------------WEKIRE 312 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~-------------~~~l~~ 312 (475)
.|.|.|++|+||+. ..|.+||||+|++.+......+++|++++++.||+|||+|.|.+. ..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 47899999999998 568899999999976554445679999999999999999999984 335555
Q ss_pred ceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 313 CSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 313 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
..|.|.|||++..++++|||++.|++.....
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~ 109 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDL 109 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccc
Confidence 6899999999998899999999998865443
No 113
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=1.8e-17 Score=137.25 Aligned_cols=114 Identities=34% Similarity=0.580 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|+|++|++|+..+..+.+||||+|.+. +...++|+++.++.+|+|||+|.|. ++ ......|.|+|||++..++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~-~~--~~~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVP-VP--SRVRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEE-ec--cCCCCEEEEEEEeCCCCCC
Confidence 57899999999999988899999999984 3456799999999999999999998 33 3245689999999999888
Q ss_pred CccccceeeccccccCCCCcceeeccCCCCCCcccceee
Q psy15955 198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLT 236 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l 236 (475)
+++||++.+++.++..+.....|++|.+.++...|.|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCCCcEEEEEECcCCCCccCceEEc
Confidence 999999999999998888888999999887777777653
No 114
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.74 E-value=2.1e-17 Score=140.20 Aligned_cols=116 Identities=28% Similarity=0.405 Sum_probs=98.2
Q ss_pred CCEEEEEEEEeecCCCCCCC----------CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccce
Q psy15955 115 NSTLILRVISAKELPAKDMS----------GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRV 184 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~----------~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~ 184 (475)
.+.|.|+|++|++|+..+.. +.+||||++.+. +....+|+++.++.||.|||+|.|. ++ ....
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~~~ 75 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTE-VH----NGRN 75 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEE-cC----CCCE
Confidence 35799999999999988862 578999999993 3445699999999999999999998 43 3468
Q ss_pred EEEEEEeeCCCCCCccccceeeccccccC--CCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955 185 LHLHVFDYDRFSRDDSIGEVFLPLCQVDL--SEKPTFWKALKPPAKDKCGELLTSLCYHP 242 (475)
Q Consensus 185 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~G~l~l~l~~~~ 242 (475)
|.|.|||++..+++++||++.++|+++.. +.....|++|.+ .|.|++.+.+..
T Consensus 76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-----~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-----QGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-----CcEEEEEEEEec
Confidence 99999999988889999999999999987 456789999973 589999888754
No 115
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.3e-17 Score=135.65 Aligned_cols=96 Identities=25% Similarity=0.388 Sum_probs=80.9
Q ss_pred CEEEEEEEEeecCCCCCCC----CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEe
Q psy15955 116 STLILRVISAKELPAKDMS----GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFD 191 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d 191 (475)
|.|.|+|++|++|+..+.. +.+||||+|++ +++.+||+++++++||+|||.|.|. +.... ....|.|+|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~---~~~~~kT~v~~~t~nPvWne~f~f~-v~~~~-~~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF---GRRVFRTSWRRHTLNPVFNERLAFE-VYPHE-KNFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE---CCEeEeeeeecCCCCCcccceEEEE-EeCcc-CCCEEEEEEEE
Confidence 5699999999999987642 35899999998 4567899999999999999999998 33222 24589999999
Q ss_pred eCCCCCCccccceeeccccccCCCC
Q psy15955 192 YDRFSRDDSIGEVFLPLCQVDLSEK 216 (475)
Q Consensus 192 ~d~~~~~~~iG~~~i~l~~l~~~~~ 216 (475)
+|..+++++||++.++|++|..+..
T Consensus 76 ~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCCCCCcceEEEEEEHHHHHhhCC
Confidence 9999999999999999999976544
No 116
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=1.6e-17 Score=136.23 Aligned_cols=106 Identities=26% Similarity=0.414 Sum_probs=85.4
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF 195 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~ 195 (475)
+.|.|+|++|++|+..+ ..||||+|.+ ++++.+|++.++ .||.|||+|.|. +.+.. ..|.|+|||.|.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~---g~~k~kT~v~~~-~nP~WnE~F~F~---~~~~~-~~L~v~V~dkd~~ 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV---QNVKSTTIAVRG-SQPCWEQDFMFE---INRLD-LGLVIELWNKGLI 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEE---CCEEeEeeECCC-CCCceeeEEEEE---EcCCC-CEEEEEEEeCCCc
Confidence 46999999999998655 3489999999 456788999887 499999999998 44444 3499999999965
Q ss_pred CCCccccceeeccccccCCCCc--ceeeccCCCCCCcccc
Q psy15955 196 SRDDSIGEVFLPLCQVDLSEKP--TFWKALKPPAKDKCGE 233 (475)
Q Consensus 196 ~~~~~iG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~G~ 233 (475)
.|++||++.|+|.++..+... ..||+|.+......|+
T Consensus 71 -~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~ 109 (127)
T cd08394 71 -WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQ 109 (127)
T ss_pred -CCCceEEEEEEhHHcccCCCCCCCccEecChHHhccCCe
Confidence 899999999999999866655 7999998643333333
No 117
>KOG0696|consensus
Probab=99.74 E-value=2e-18 Score=163.63 Aligned_cols=123 Identities=33% Similarity=0.519 Sum_probs=106.8
Q ss_pred CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE 308 (475)
Q Consensus 229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~ 308 (475)
+.+|.|.+.+.. ....|.|+|.+|+||.++|.+|.+||||++.+.++.+...+++|++++.++||+|||+|.|.+.++
T Consensus 166 E~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~ 243 (683)
T KOG0696|consen 166 ERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPS 243 (683)
T ss_pred hhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccc
Confidence 567999888877 577999999999999999999999999999999988888899999999999999999999999877
Q ss_pred ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955 309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMIT 355 (475)
Q Consensus 309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~ 355 (475)
+- ++.|.|+|||||+.++++|||...+.+.++.+ .....|+.+++
T Consensus 244 Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLs 288 (683)
T KOG0696|consen 244 DK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLS 288 (683)
T ss_pred cc-cceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhh
Confidence 74 67899999999999999999999997765443 24455666554
No 118
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.74 E-value=2.3e-17 Score=139.92 Aligned_cols=120 Identities=31% Similarity=0.481 Sum_probs=99.1
Q ss_pred ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310 (475)
Q Consensus 231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l 310 (475)
+|+|.+++.|.+ +.|.|+|++|++|+..+..+.+||||+|++...+....+++|++++++.||.|||+|.|.+...+.
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~ 78 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK 78 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence 589999999987 889999999999999888889999999998654444457899999999999999999999875442
Q ss_pred ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955 311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMI 354 (475)
Q Consensus 311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~ 354 (475)
...|.|+|||++..+++++||++.+++.+.... ....|.++.
T Consensus 79 -~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~ 120 (131)
T cd04026 79 -DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLL 120 (131)
T ss_pred -CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence 457999999999988999999999988665532 334454443
No 119
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=2.5e-17 Score=138.69 Aligned_cols=113 Identities=31% Similarity=0.508 Sum_probs=93.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC-
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF- 195 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~- 195 (475)
.|.|+|++|++|+..+..+.+||||+|++. ....+|+++.+++||.|||+|.|. + ... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~-~--~~~-~~~l~i~v~d~d~~~ 74 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFE-C--HNS-SDRIKVRVWDEDDDI 74 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEE-e--cCC-CCEEEEEEEECCCCc
Confidence 589999999999999988999999999983 356799999999999999999997 2 222 35799999999852
Q ss_pred ----------CCCccccceeeccccccCCCCcceeeccCCCCC--Ccccceeeee
Q psy15955 196 ----------SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK--DKCGELLTSL 238 (475)
Q Consensus 196 ----------~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~G~l~l~l 238 (475)
+.+++||++.+++.++. +....|+.|.+... ..+|+|.+++
T Consensus 75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 75 KSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 46899999999999874 34579999987543 4678888764
No 120
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.73 E-value=1.2e-17 Score=140.49 Aligned_cols=117 Identities=30% Similarity=0.378 Sum_probs=98.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeec-CCCCceeeeeEEeeccccccc--ccceEEEEEEeeC
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR-RTLNPRWNETLYFEGFPIQKL--QSRVLHLHVFDYD 193 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~~~nP~w~e~f~f~~~~~~~~--~~~~L~~~V~d~d 193 (475)
+|.|+|++|++|+..+..+.+||||+|++.+ ..+.+|+++. ++.||+|||.|.|. ++...+ ....|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECC
Confidence 4889999999999999889999999999943 3567899875 58999999999998 443321 2468999999999
Q ss_pred CCCCCccccceeeccccccCCCC-----cceeeccCCCCCCcccceee
Q psy15955 194 RFSRDDSIGEVFLPLCQVDLSEK-----PTFWKALKPPAKDKCGELLT 236 (475)
Q Consensus 194 ~~~~~~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~G~l~l 236 (475)
..+++++||++.++|.++..+.. ...||+|....++..|.|.+
T Consensus 78 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 78 PSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 88889999999999999976654 36899999888889998864
No 121
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=5.2e-17 Score=136.49 Aligned_cols=117 Identities=20% Similarity=0.323 Sum_probs=95.3
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF 195 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~ 195 (475)
..|.|+|++|++|+..+..|.+||||++.+ +.+.++|++++++.||+|||.|.|. ... ....|.|+|||++..
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~---~~~-~~~~l~i~V~d~~~~ 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKC---EGESVRSPVQKDTLSPEFDTQAIFY---RKK-PRSPIKIQVWNSNLL 75 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEE---CCEEEEeCccCCCCCCcccceEEEE---ecC-CCCEEEEEEEECCCC
Confidence 469999999999999999999999999998 3457899999999999999999987 223 256899999999987
Q ss_pred CCCccccceeeccccccCCCCcceeeccCC----CCCCcccceeeeeeecC
Q psy15955 196 SRDDSIGEVFLPLCQVDLSEKPTFWKALKP----PAKDKCGELLTSLCYHP 242 (475)
Q Consensus 196 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~----~~~~~~G~l~l~l~~~~ 242 (475)
+ +++||.+.+++.++. .....|++|.. ..+...|+|.+.+.+.+
T Consensus 76 ~-d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 C-DEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred C-CCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 4 899999999998764 33456777743 34567788888876653
No 122
>KOG1028|consensus
Probab=99.72 E-value=1.5e-17 Score=166.39 Aligned_cols=120 Identities=37% Similarity=0.589 Sum_probs=105.6
Q ss_pred cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFPIQKL 180 (475)
Q Consensus 103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~~~~~ 180 (475)
|+|.+++.|.+..+.|.|.|++|++|+.++..+.+||||++++..++.. +.||.++++++||+|||+|.|. ++.+.+
T Consensus 285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp~~~l 363 (421)
T KOG1028|consen 285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VPPEQL 363 (421)
T ss_pred ceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CCHHHh
Confidence 8999999999999999999999999999999999999999999876633 5689999999999999999997 898899
Q ss_pred ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955 181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP 225 (475)
Q Consensus 181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 225 (475)
....|.|+|||+|.++++++||.+.+.... .+....+|..+..
T Consensus 364 ~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~ 406 (421)
T KOG1028|consen 364 AEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLN 406 (421)
T ss_pred heeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHh
Confidence 888999999999999999999988777655 3334567776644
No 123
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.72 E-value=5.9e-17 Score=133.89 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=80.7
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccC-CCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC-NLNPVFNESFSFNVPWEKIRECSLNVMVMDFD 323 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~ 323 (475)
|.|.|+|++|++++..+ .|++||||++.+ ++ .+++|+++.+ +.||+|||+|.|.+.... ..|.|+|||++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l--g~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~~---~~l~~~V~d~d 72 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV--GH---AVYETPTAYNGAKNPRWNKTIQCTLPEGV---DSIYIEIFDER 72 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEE--CC---EEEEeEEccCCCCCCccCeEEEEEecCCC---cEEEEEEEeCC
Confidence 68999999999998877 789999999988 22 3458998875 799999999999987432 46999999999
Q ss_pred CCCCCeeeEEEEEcCcC-CCCCcccccccccc
Q psy15955 324 NIGRNELIGRILLAGKN-GSGASETKHWQDMI 354 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~~-~~~~~~~~~w~~~~ 354 (475)
.+++|++||.+.+++.. ...+...+.|..+.
T Consensus 73 ~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~ 104 (121)
T cd04016 73 AFTMDERIAWTHITIPESVFNGETLDDWYSLS 104 (121)
T ss_pred CCcCCceEEEEEEECchhccCCCCccccEeCc
Confidence 99999999999998853 43443444555443
No 124
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=4.5e-17 Score=133.81 Aligned_cols=104 Identities=27% Similarity=0.376 Sum_probs=86.7
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeec-ccccccccceEEEEEEeeC
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEG-FPIQKLQSRVLHLHVFDYD 193 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~-~~~~~~~~~~L~~~V~d~d 193 (475)
...|.|+|++|++|+ .+.+||||+|++. .++++|++++++.||.|||+|.|.. .+..++....|.|+|||++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 446999999999998 5789999999994 4567999999999999999999983 2223344578999999999
Q ss_pred CCCCCccccceeeccccccCCCC---cceeeccCC
Q psy15955 194 RFSRDDSIGEVFLPLCQVDLSEK---PTFWKALKP 225 (475)
Q Consensus 194 ~~~~~~~iG~~~i~l~~l~~~~~---~~~~~~L~~ 225 (475)
.++++++||++.++|+++..+.. ...|++|..
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 98889999999999999976644 357999864
No 125
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.71 E-value=6e-17 Score=137.80 Aligned_cols=109 Identities=33% Similarity=0.543 Sum_probs=92.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCCceEEeeeecCCCCceeeeeEEeecccc------------cccccce
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLP-DKKHRLETKIKRRTLNPRWNETLYFEGFPI------------QKLQSRV 184 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~------------~~~~~~~ 184 (475)
|.|.|++|++|+.. ..+.+||||+|++.. .....++|+++.++.||.|||+|.|..... .++....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 788999999999963 224578999999999999999999983221 1335678
Q ss_pred EEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 185 LHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 185 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
|.|+|||++..+++++||++.++|.++........|++|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999999888999999999999998777788999998865
No 126
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=4.3e-17 Score=133.57 Aligned_cols=91 Identities=31% Similarity=0.478 Sum_probs=79.7
Q ss_pred EEEEEEeeccCccccc-CCCccceEEEEEEeCceeeeeeecccccCCCCCee-cceEEEeecccccccceEEEEEEeccC
Q psy15955 247 LTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVF-NESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w-~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
|.|+|++|++|+.++. .+.+||||++++. + .+++|++++++.||.| ||+|.|.++..++.+..|.|+|||++.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~--~---~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG--S---TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC--C---eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 5799999999999884 7889999999873 2 5678999999999999 999999998777766789999999999
Q ss_pred CCCCeeeEEEEEcCcCCC
Q psy15955 325 IGRNELIGRILLAGKNGS 342 (475)
Q Consensus 325 ~~~d~~lG~~~i~l~~~~ 342 (475)
++++++||++.+++.+..
T Consensus 76 ~~~~~~iG~~~~~l~~l~ 93 (110)
T cd08688 76 YSANDAIGKVYIDLNPLL 93 (110)
T ss_pred CCCCCceEEEEEeHHHhc
Confidence 999999999999875443
No 127
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.70 E-value=5.5e-17 Score=139.47 Aligned_cols=102 Identities=41% Similarity=0.624 Sum_probs=86.8
Q ss_pred CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--------------------------CceEEeeeecCCCCceee
Q psy15955 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--------------------------KHRLETKIKRRTLNPRWN 167 (475)
Q Consensus 114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--------------------------~~~~kT~v~~~~~nP~w~ 167 (475)
....|.|+|++|++|+..|..|.+||||+|.+.+.. ...++|+++.+++||+||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 455799999999999999999999999999986432 124789999999999999
Q ss_pred eeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955 168 ETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL 223 (475)
Q Consensus 168 e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L 223 (475)
|+|.|. +..+....|.|+|||++ +++||++.++++++. +.....||+|
T Consensus 106 E~F~f~---v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 106 ETFRFE---VEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred cEEEEE---eccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 999998 34445678999999998 789999999999998 4456899986
No 128
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=5.5e-17 Score=139.28 Aligned_cols=94 Identities=31% Similarity=0.614 Sum_probs=79.4
Q ss_pred EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccccccc
Q psy15955 117 TLILRVISAKELPAKDMSG--------------TSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQS 182 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~--------------~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~ 182 (475)
.|.|+|++|++|+.+|..+ .+||||+|.+. .++.||+++++++||+|||+|.|. +..... .
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~-~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFP-EMFPPL-C 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEE-eeCCCc-C
Confidence 3789999999999988543 68999999983 346799999999999999999998 333332 3
Q ss_pred ceEEEEEEeeCCCCCCccccceeeccccccCCC
Q psy15955 183 RVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE 215 (475)
Q Consensus 183 ~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~ 215 (475)
..|.|+|||+|..++|++||.+.+++.++...+
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 589999999999989999999999999987654
No 129
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.70 E-value=9.5e-17 Score=133.54 Aligned_cols=101 Identities=25% Similarity=0.314 Sum_probs=82.1
Q ss_pred eEEEEEEeecc---CcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955 246 VLTITLLKARN---LKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF 322 (475)
Q Consensus 246 ~L~v~v~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~ 322 (475)
.|.|+|++|+| |+.++..|++||||.+.+ ++ .+.+|++++++.||+|||+|.|.+.... ..|.|+|||+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~--g~---~~~rTk~~~~~~nP~WnE~f~f~v~~~~---~~l~v~V~d~ 72 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKY--GP---KWVRTRTVEDSSNPRWNEQYTWPVYDPC---TVLTVGVFDN 72 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEE--CC---EEeEcCcccCCCCCcceeEEEEEecCCC---CEEEEEEEEC
Confidence 37899999999 899999999999999976 22 3458999999999999999999986322 3799999999
Q ss_pred cCCC------CCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955 323 DNIG------RNELIGRILLAGKNGSGASETKHWQDMI 354 (475)
Q Consensus 323 ~~~~------~d~~lG~~~i~l~~~~~~~~~~~w~~~~ 354 (475)
+..+ +|++||++.+++.....+....+|..+.
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL 110 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence 9873 8999999999886665544445555544
No 130
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.70 E-value=5.2e-16 Score=163.65 Aligned_cols=220 Identities=31% Similarity=0.462 Sum_probs=166.5
Q ss_pred EeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEE
Q psy15955 111 YDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVF 190 (475)
Q Consensus 111 ~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~ 190 (475)
|+...+.++|.|..|.+|......+++|||++|.+. +..++||-....++||+|++..... +-. ..+.|.+++.
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~---v~s-k~~r~~l~~~ 779 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN--NLVKYRTIYGSSTLNPIWNEILYVP---VTS-KNQRLTLECM 779 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEec--ceeEEEEecccCccccceeeeEEEE---ecC-CccEEeeeee
Confidence 445678999999999999988888999999999984 4567899999999999999987654 333 2346888888
Q ss_pred eeCCCCCCccccceeeccccccCCCCcc----------eeeccCCCCCCcc-----------------------------
Q psy15955 191 DYDRFSRDDSIGEVFLPLCQVDLSEKPT----------FWKALKPPAKDKC----------------------------- 231 (475)
Q Consensus 191 d~d~~~~~~~iG~~~i~l~~l~~~~~~~----------~~~~L~~~~~~~~----------------------------- 231 (475)
|+...+.|..+|++.+++.++....... ..-.|........
T Consensus 780 ~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~ 859 (1227)
T COG5038 780 DYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSS 859 (1227)
T ss_pred cchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhh
Confidence 9998999999999999988875311000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy15955 232 -------------------------------------------------------------------------------- 231 (475)
Q Consensus 232 -------------------------------------------------------------------------------- 231 (475)
T Consensus 860 e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd 939 (1227)
T COG5038 860 EKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDD 939 (1227)
T ss_pred HHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecC
Confidence
Q ss_pred -------------------------------------------------------------------------c--ceee
Q psy15955 232 -------------------------------------------------------------------------G--ELLT 236 (475)
Q Consensus 232 -------------------------------------------------------------------------G--~l~l 236 (475)
| ++.+
T Consensus 940 ~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v 1019 (1227)
T COG5038 940 ASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLV 1019 (1227)
T ss_pred CCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEE
Confidence 1 1222
Q ss_pred eeeecCC------------ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe
Q psy15955 237 SLCYHPS------------NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304 (475)
Q Consensus 237 ~l~~~~~------------~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~ 304 (475)
++.|.|. .|.|.|.+..|.||+..+.+|.+||||++.+. ....++|+++++++||.|||+|..+
T Consensus 1020 ~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln----~k~vyktkv~KktlNPvwNEe~~i~ 1095 (1227)
T COG5038 1020 QVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN----EKSVYKTKVVKKTLNPVWNEEFTIE 1095 (1227)
T ss_pred EEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEec----ceecccccchhccCCCCccccceEe
Confidence 2223221 57799999999999999999999999999874 2237899999999999999999998
Q ss_pred ecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 305 v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
|..... ..+.+.|+|||...+++.||.+.++|....
T Consensus 1096 v~~r~~--D~~~i~v~Dwd~~~knd~lg~~~idL~~l~ 1131 (1227)
T COG5038 1096 VLNRVK--DVLTINVNDWDSGEKNDLLGTAEIDLSKLE 1131 (1227)
T ss_pred eecccc--ceEEEEEeecccCCCccccccccccHhhcC
Confidence 875443 469999999999999999999999886544
No 131
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.70 E-value=8.7e-17 Score=134.93 Aligned_cols=107 Identities=32% Similarity=0.429 Sum_probs=91.6
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecC-CCCceeeeeEEeeccccccc-ccceEEEEEEeeC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR-TLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDYD 193 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~d 193 (475)
|.|.|+|++|++|+..+..+.+||||+|.+ +....+|+++.+ +.||+|||+|.|. ++.... ....|.|+|||.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC---RTQERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEE---CCEeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECc
Confidence 469999999999999998899999999998 345678888874 8999999999998 433211 2468999999999
Q ss_pred CCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955 194 RFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP 226 (475)
Q Consensus 194 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 226 (475)
..+++++||++.+++.++..++....|+.|.+.
T Consensus 77 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 77 NFSDDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred cCCCCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 988899999999999999888888999999875
No 132
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.69 E-value=1.8e-16 Score=132.19 Aligned_cols=102 Identities=26% Similarity=0.352 Sum_probs=87.2
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEeCCC----CceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC--
Q psy15955 121 RVISAKELPAKDMSGTSDPYVKVALLPDK----KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR-- 194 (475)
Q Consensus 121 ~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~-- 194 (475)
..++|++|+..+..+.+||||+|++.+.. ...++|+++++++||+|||+|.|. +... ....|.|+|||+|.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~--~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFE--EVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeE--eeeEEEEEEEEecCCc
Confidence 45899999999999999999999997543 124799999999999999999997 3333 34579999999997
Q ss_pred --CCCCccccceeeccccccCCCCcceeeccCC
Q psy15955 195 --FSRDDSIGEVFLPLCQVDLSEKPTFWKALKP 225 (475)
Q Consensus 195 --~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 225 (475)
.+++++||++.+++.++..+.....|+.|.+
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 7899999999999999998888889999954
No 133
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.69 E-value=6.6e-16 Score=162.87 Aligned_cols=217 Identities=27% Similarity=0.458 Sum_probs=163.2
Q ss_pred CCCEEEEEEEEeecCCCCC--CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEe
Q psy15955 114 DNSTLILRVISAKELPAKD--MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFD 191 (475)
Q Consensus 114 ~~~~L~v~v~~a~~L~~~~--~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d 191 (475)
.-|.|.|+|.+|++|...+ ..+..|||+.+... +....||+++++++||+|||+|... +..+ ...|.++|||
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~---lns~-~d~L~LslyD 507 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYIL---LNSF-TDPLNLSLYD 507 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEec--cccCCccceeeccCCccccceEEEE---eccc-CCceeEEEEe
Confidence 4578999999999999988 67899999999973 4445699999999999999999865 4443 4679999999
Q ss_pred eCCCCCCccccceeeccccccCCCCc--------------------ceeeccCCCCC-----------Ccccceeeee--
Q psy15955 192 YDRFSRDDSIGEVFLPLCQVDLSEKP--------------------TFWKALKPPAK-----------DKCGELLTSL-- 238 (475)
Q Consensus 192 ~d~~~~~~~iG~~~i~l~~l~~~~~~--------------------~~~~~L~~~~~-----------~~~G~l~l~l-- 238 (475)
.+...+|+.+|.+.++|..|...... ..|++....+. ...|-+.+.+
T Consensus 508 ~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~ 587 (1227)
T COG5038 508 FNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLRE 587 (1227)
T ss_pred ccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeec
Confidence 98889999999999999887533321 12333221110 0112222222
Q ss_pred --------------------------------------------------------------------------------
Q psy15955 239 -------------------------------------------------------------------------------- 238 (475)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (475)
T Consensus 588 ~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~ 667 (1227)
T COG5038 588 VKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLID 667 (1227)
T ss_pred cccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhh
Confidence
Q ss_pred ----------------------eec---------------CCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceee
Q psy15955 239 ----------------------CYH---------------PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI 281 (475)
Q Consensus 239 ----------------------~~~---------------~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~ 281 (475)
.|. ...+.++|.|..|.+|......+++|||.++.+. ..
T Consensus 668 ~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n----~~ 743 (1227)
T COG5038 668 RTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN----NL 743 (1227)
T ss_pred ccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEec----ce
Confidence 111 1245789999999999988889999999999663 34
Q ss_pred eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
.++||-....+.||.|++..-.++... ...|.+.++|+...++|..||++.+...+...
T Consensus 744 ~k~rti~~~~~~npiw~~i~Yv~v~sk---~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~ 802 (1227)
T COG5038 744 VKYRTIYGSSTLNPIWNEILYVPVTSK---NQRLTLECMDYEESGDDRNLGEVNINVSNVSK 802 (1227)
T ss_pred eEEEEecccCccccceeeeEEEEecCC---ccEEeeeeecchhccccceeceeeeeeeeeee
Confidence 678898888999999999765555422 22488889999999999999999998866554
No 134
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.69 E-value=3.2e-16 Score=132.47 Aligned_cols=116 Identities=27% Similarity=0.384 Sum_probs=91.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC----------ceEEeeeecCCCCcee-eeeEEeecccccccccceE
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKK----------HRLETKIKRRTLNPRW-NETLYFEGFPIQKLQSRVL 185 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----------~~~kT~v~~~~~nP~w-~e~f~f~~~~~~~~~~~~L 185 (475)
.+.|.+++|++|+ .+.+|++||||++++.+.+. +.++|+++++++||+| ||+|.|. +. ....|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~----~~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GL----PTDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cC----CCCEE
Confidence 3678999999998 67789999999999976553 3689999999999999 9999998 32 24589
Q ss_pred EEEEEeeCCCCC---CccccceeeccccccCCC---CcceeeccCCCC--CCcccceeeee
Q psy15955 186 HLHVFDYDRFSR---DDSIGEVFLPLCQVDLSE---KPTFWKALKPPA--KDKCGELLTSL 238 (475)
Q Consensus 186 ~~~V~d~d~~~~---~~~iG~~~i~l~~l~~~~---~~~~~~~L~~~~--~~~~G~l~l~l 238 (475)
.|+|||++..++ +++||++.+++.++..+. ....|++|.... ....|+|.+.+
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999999875443 699999999999996553 245789887543 23457666554
No 135
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.69 E-value=1.2e-16 Score=131.13 Aligned_cols=96 Identities=28% Similarity=0.391 Sum_probs=81.8
Q ss_pred eeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc-ccceEEEEEEec
Q psy15955 245 SVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI-RECSLNVMVMDF 322 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l-~~~~l~i~V~d~ 322 (475)
|.|.|+|++|++|+..+.. +.+||||+|++...++ ..++|++++++.||.|||+|.|.+...++ ....|.|+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~ 78 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGK--PLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS 78 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCC--ccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence 5799999999999999987 8999999998864432 35799999999999999999998866544 245799999999
Q ss_pred cCCCCCeeeEEEEEcCcCCC
Q psy15955 323 DNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 323 ~~~~~d~~lG~~~i~l~~~~ 342 (475)
+..+++++||++.+++.+..
T Consensus 79 d~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 79 DRFTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCCCCcceEEEEEHHHHh
Confidence 99999999999999875443
No 136
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.68 E-value=1.7e-16 Score=132.20 Aligned_cols=92 Identities=28% Similarity=0.319 Sum_probs=78.5
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
.++|.|+|++|++|+. +..+.+||||+|++. ++++||++++++.||+|||+|.|..... .....|+|+|||+|.
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~--~~~~~L~v~V~D~d~ 100 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVEL--SPGGKLRFEVWDRDN 100 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccC--CCCCEEEEEEEeCCC
Confidence 4579999999999984 667889999999983 3478999999999999999999962222 235689999999999
Q ss_pred CCCCccccceeecccccc
Q psy15955 195 FSRDDSIGEVFLPLCQVD 212 (475)
Q Consensus 195 ~~~~~~iG~~~i~l~~l~ 212 (475)
.+++++||++.++|....
T Consensus 101 ~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCeeEEEEEEecCCc
Confidence 999999999999998765
No 137
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3.3e-16 Score=130.22 Aligned_cols=105 Identities=26% Similarity=0.366 Sum_probs=90.1
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF 195 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~ 195 (475)
|.|.|+|++|++|+..+..+.+||||+|++. +....+|+++.++.||.|||.|.|. + ... ...|.|+|||++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~-v--~~~-~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVP-V--TSP-NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEE-e--cCC-CCEEEEEEEECCCC
Confidence 4689999999999999988999999999983 3356799999999999999999887 2 222 36899999999999
Q ss_pred CCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 196 SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 196 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
+++++||++.+++.++..+ ....||.|...+
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999766 558898887654
No 138
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.68 E-value=4.1e-16 Score=129.49 Aligned_cols=114 Identities=33% Similarity=0.501 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|+|++|++|+.. +.+||||+|++. +...++|+++++ .||+|||+|.|. ++..++....|.|.|||.+...+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCC
Confidence 78999999999976 789999999993 334579999988 999999999998 55544445678889999886655
Q ss_pred CccccceeeccccccCCCCcceeeccCCCC--CCcccceeeeeee
Q psy15955 198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPA--KDKCGELLTSLCY 240 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~G~l~l~l~~ 240 (475)
+.++|. ++|..+..+.....|++|.+.. ....|+|++.+.|
T Consensus 75 ~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 75 DIVIGK--VALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eeEEEE--EEecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 666665 5555566677778999998754 3568999998875
No 139
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.68 E-value=4.2e-16 Score=129.21 Aligned_cols=91 Identities=35% Similarity=0.463 Sum_probs=78.2
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
.++|.|++|++|+..+..+.+||||++++. + .+++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~--~---~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~~ 73 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG--N---EKYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDTG 73 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC--C---EeEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCCC
Confidence 378999999999999988999999999872 2 356899999999999999999998643 245799999999999
Q ss_pred CCCeeeEEEEEcCcCCCC
Q psy15955 326 GRNELIGRILLAGKNGSG 343 (475)
Q Consensus 326 ~~d~~lG~~~i~l~~~~~ 343 (475)
+++++||++.+++.+...
T Consensus 74 ~~~~~iG~~~~~l~~l~~ 91 (116)
T cd08376 74 KKDEFIGRCEIDLSALPR 91 (116)
T ss_pred CCCCeEEEEEEeHHHCCC
Confidence 999999999998765443
No 140
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2.9e-16 Score=131.48 Aligned_cols=119 Identities=29% Similarity=0.384 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|+|.|++|++|++.+..+.+||||+|++.+. ....||+++++++||+|||+|.|. ........|.|+|||+|..++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~---~~~~~~~~L~~~V~d~d~~~~ 77 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELE---ATLPGNSILKISVMDYDLLGS 77 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEE---ecCCCCCEEEEEEEECCCCCC
Confidence 7899999999999999999999999998432 223578889999999999999997 333345789999999999989
Q ss_pred CccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955 198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHP 242 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~ 242 (475)
+++||++.++|++... ..+..+..+. +.....|.++..-.+.|
T Consensus 78 dd~iG~~~i~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 78 DDLIGETVIDLEDRFF-SKHRATCGLP-PTYEESGPNQWRDSLKP 120 (124)
T ss_pred CceeEEEEEeeccccc-chHHHhccCC-CcccccCceecCcccCc
Confidence 9999999999998865 2222333332 22335566666655544
No 141
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.67 E-value=4.1e-16 Score=130.65 Aligned_cols=102 Identities=29% Similarity=0.552 Sum_probs=83.4
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
+|.|+|++|++|+..+..+.+||||++++. + .+++|++++++.||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~--~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~ 73 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN--G---QTLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDLV 73 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC--C---EEEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCCC
Confidence 589999999999999988899999999862 2 3468999999999999999999986533 45799999999999
Q ss_pred CCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955 326 GRNELIGRILLAGKNGSGASETKHWQDMI 354 (475)
Q Consensus 326 ~~d~~lG~~~i~l~~~~~~~~~~~w~~~~ 354 (475)
+++++||++.+++.+.........|.++.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~ 102 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQAKQEEGWFRLL 102 (123)
T ss_pred CCCcEeEEEEEEHHHcccCCCCCCEEECC
Confidence 99999999999987655433344455443
No 142
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.67 E-value=3.2e-16 Score=132.02 Aligned_cols=92 Identities=30% Similarity=0.501 Sum_probs=78.1
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc-cccccceEEEEEEeccC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW-EKIRECSLNVMVMDFDN 324 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-~~l~~~~l~i~V~d~~~ 324 (475)
.|.|+|++|++|+..+..+.+||||++++. + .+++|++++++.||.|||.|.|.+.. ..+....|.|+|||++.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~---~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD--G---QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC--C---EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 488999999999999988999999999873 2 35689999999999999999999863 33345679999999998
Q ss_pred CC-CCeeeEEEEEcCcCCC
Q psy15955 325 IG-RNELIGRILLAGKNGS 342 (475)
Q Consensus 325 ~~-~d~~lG~~~i~l~~~~ 342 (475)
++ ++++||++.+++.+..
T Consensus 76 ~~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFV 94 (127)
T ss_pred CcCCCCeeeEEEEcHHHcC
Confidence 86 8999999999886544
No 143
>KOG1265|consensus
Probab=99.66 E-value=6.5e-17 Score=164.58 Aligned_cols=183 Identities=20% Similarity=0.288 Sum_probs=136.7
Q ss_pred HHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeeeEeC
Q psy15955 18 FLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMYID 94 (475)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~~~~ 94 (475)
...+.+.||||+|+|+|||||-|..=|.+.|...+.+=... ++...++|..||+|||++|||||+++..++ +
T Consensus 616 yNK~QlSRIYPKgtRvdSSNymPqifWnaGcQmVsLNfQT~dlaMQlN~g~FEyNG~sGYllKPdfmRrpDr~f-----d 690 (1189)
T KOG1265|consen 616 YNKRQLSRIYPKGTRVDSSNYMPQIFWNAGCQMVSLNFQTPDLAMQLNMGMFEYNGGSGYLLKPDFMRRPDRQF-----D 690 (1189)
T ss_pred hhhHhhhccccCcccccccccchHHHHhccceEEEeeccCccHHHHhhhhheeecCCccceeChHHhhCCCcCc-----C
Confidence 45677899999999999999998766555554444443332 344558899999999999999999998776 5
Q ss_pred CCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEe--CCCC--ceEEeee-ecCCCCceeeee
Q psy15955 95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALL--PDKK--HRLETKI-KRRTLNPRWNET 169 (475)
Q Consensus 95 ~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~--~~~~--~~~kT~v-~~~~~nP~w~e~ 169 (475)
|+......|.| ..++.|+||++.-|..++.+ .||.|.+. |.+. ..+||++ ..|++||+|+|+
T Consensus 691 PFse~~VdgvI---------A~t~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~ee 757 (1189)
T KOG1265|consen 691 PFSESPVDGVI---------AATLSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEE 757 (1189)
T ss_pred CcccCcccceE---------EeeEEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcccccC
Confidence 66666666764 45789999999999887744 99999984 3332 2467885 557999999976
Q ss_pred -EEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955 170 -LYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227 (475)
Q Consensus 170 -f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 227 (475)
|.|.-|-..++ ..|+|.||+.+ ..+||+-.+|+..|..|- ....|....
T Consensus 758 pfvF~KVvLpeL--A~lRiavyeEg----gK~ig~RIlpvd~l~~GY---rhv~LRse~ 807 (1189)
T KOG1265|consen 758 PFVFRKVVLPEL--ASLRIAVYEEG----GKFIGQRILPVDGLNAGY---RHVCLRSES 807 (1189)
T ss_pred Ccccceecccch--hheeeeeeccC----CceeeeeccchhcccCcc---eeEEecCCC
Confidence 88875444444 58999999876 369999999999987543 344454433
No 144
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.66 E-value=6.3e-16 Score=128.68 Aligned_cols=93 Identities=31% Similarity=0.540 Sum_probs=78.2
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG 326 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~ 326 (475)
|.|+|++|++|+..+..+.+||||++++...+ ..+++|++++++.||.|||+|.|.+.... ...|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC-
Confidence 78999999999999888999999999874322 24679999999999999999999987542 34699999999998
Q ss_pred CCeeeEEEEEcCcCCCCC
Q psy15955 327 RNELIGRILLAGKNGSGA 344 (475)
Q Consensus 327 ~d~~lG~~~i~l~~~~~~ 344 (475)
++++||++.+++.+...+
T Consensus 77 ~~~~iG~~~~~l~~l~~g 94 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLG 94 (119)
T ss_pred CCcccEEEEEEHHHCCCC
Confidence 899999999988655443
No 145
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.66 E-value=5.5e-16 Score=128.88 Aligned_cols=102 Identities=27% Similarity=0.367 Sum_probs=82.2
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD 323 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~ 323 (475)
|.|.|+|++|++|+..+..+.+||||++++.. .+++|+++. ++.||.|||.|.|.++... ...|.|+|||++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~v~~~~--~~~l~i~v~d~~ 73 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFEITEDK--KPILKVAVFDDD 73 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-----CccccccccCCCCCCccCceEEEEecCCC--CCEEEEEEEeCC
Confidence 57999999999999999999999999998732 346788775 4799999999999997542 357999999999
Q ss_pred CCCCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955 324 NIGRNELIGRILLAGKNGSGASETKHWQDMI 354 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~ 354 (475)
..+ +++||++.+++.+...+.....|.++.
T Consensus 74 ~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~ 103 (118)
T cd08681 74 KRK-PDLIGDTEVDLSPALKEGEFDDWYELT 103 (118)
T ss_pred CCC-CcceEEEEEecHHHhhcCCCCCcEEec
Confidence 876 899999999887655444445555543
No 146
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.66 E-value=5.1e-16 Score=132.72 Aligned_cols=93 Identities=37% Similarity=0.625 Sum_probs=82.0
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF 195 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~ 195 (475)
|.|.|+|++|++|+..+. +.+||||+|.+ +.+..+|++++++.||+|||+|.|. + .+. ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~---g~~~~kT~vvk~t~nP~WnE~f~f~-i--~~~-~~~l~~~V~D~d~~ 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL---GNQKVKTRVIKKNLNPVWNEELTLS-V--PNP-MAPLKLEVFDKDTF 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE---CCEEEEeeeEcCCCCCeecccEEEE-e--cCC-CCEEEEEEEECCCC
Confidence 569999999999999887 88999999998 4567899999999999999999998 3 333 56899999999999
Q ss_pred CCCccccceeeccccccCCCC
Q psy15955 196 SRDDSIGEVFLPLCQVDLSEK 216 (475)
Q Consensus 196 ~~~~~iG~~~i~l~~l~~~~~ 216 (475)
++|++||++.+++.++.....
T Consensus 74 ~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred CCCCEEEEEEEEHHHhhhhhh
Confidence 999999999999999875544
No 147
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=5.7e-16 Score=125.98 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=76.2
Q ss_pred eeEEEEEEeeccCcccccC----CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEE
Q psy15955 245 SVLTITLLKARNLKAKDIN----GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM 320 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~ 320 (475)
|.|.|+|++|++|+..+.. +.+||||++++ ++ .++||++++++.||+|||.|.|.+...+. ...|.|+||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~--~~---~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~ 74 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF--GR---RVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVL 74 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE--CC---EeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEE
Confidence 5799999999999987632 35899999987 22 35689999999999999999999865443 457999999
Q ss_pred eccCCCCCeeeEEEEEcCcCC
Q psy15955 321 DFDNIGRNELIGRILLAGKNG 341 (475)
Q Consensus 321 d~~~~~~d~~lG~~~i~l~~~ 341 (475)
|++..++|++||++.+++.++
T Consensus 75 D~d~~~~dd~IG~~~l~L~~l 95 (108)
T cd04039 75 DKDKFSFNDYVATGSLSVQEL 95 (108)
T ss_pred ECCCCCCCcceEEEEEEHHHH
Confidence 999999999999999987543
No 148
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.65 E-value=8e-16 Score=128.46 Aligned_cols=101 Identities=29% Similarity=0.386 Sum_probs=82.8
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
.|.|+|++|++|+..+..+.+||||++++. + ...++|++++++.||.|||+|.|.+.. + ...|.|+|||++..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~--~~~~kT~~~~~t~nP~Wne~f~f~v~~--~-~~~l~~~v~D~d~~ 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--G--KTVYKSKTIYKNLNPVWDEKFTLPIED--V-TQPLYIKVFDYDRG 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--C--EEEEEeeeccCCCCCccceeEEEEecC--C-CCeEEEEEEeCCCC
Confidence 378999999999999999999999999763 2 245789999999999999999999853 2 34799999999999
Q ss_pred CCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 326 GRNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 326 ~~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
+++++||++.+++.+...+...+.|.++
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L 101 (121)
T cd04042 74 LTDDFMGSAFVDLSTLELNKPTEVKLKL 101 (121)
T ss_pred CCCcceEEEEEEHHHcCCCCCeEEEEEC
Confidence 9999999999988665544444444444
No 149
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.65 E-value=1.4e-15 Score=130.54 Aligned_cols=133 Identities=18% Similarity=0.262 Sum_probs=97.2
Q ss_pred EEEEEEeecc--CcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc------ccccceEEEE
Q psy15955 247 LTITLLKARN--LKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE------KIRECSLNVM 318 (475)
Q Consensus 247 L~v~v~~a~~--L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~------~l~~~~l~i~ 318 (475)
..++|..|++ |+..+..+.+||||++++...+....+.+|+++++|+||+|||+|.|.|... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4455666666 7777778889999999985444455688999999999999999999999654 3456679999
Q ss_pred EEeccCC-CCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCc
Q psy15955 319 VMDFDNI-GRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGA 397 (475)
Q Consensus 319 V~d~~~~-~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~ 397 (475)
|||.+.+ .+|++||++.++|.......+...|.+++.. ++ ...|-.++.+..+.|-+.-+
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-~k------------------~~Gg~l~v~ir~r~p~~~~~ 144 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-RK------------------ATGGKLEVKVRLREPLTGKQ 144 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-CC------------------CcCCEEEEEEEecCCCccce
Confidence 9999986 5799999999998766544444445554321 11 23566667777777766544
Q ss_pred h
Q psy15955 398 A 398 (475)
Q Consensus 398 ~ 398 (475)
+
T Consensus 145 ~ 145 (155)
T cd08690 145 L 145 (155)
T ss_pred e
Confidence 4
No 150
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.65 E-value=1e-15 Score=129.94 Aligned_cols=117 Identities=24% Similarity=0.395 Sum_probs=94.3
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
...|.|.|++|++|+.++ +|||.|.+ ++....||+++.++.||.|+|+|.|...+ ....|.|.||+.+.
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~L--d~~~vaRT~v~~~~~nP~W~E~F~f~~~~----~~~~l~v~v~k~~~ 78 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCL--DKTLYARTTSKLKTDTLFWGEHFEFSNLP----PVSVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEE--CCEEEEEEEEEcCCCCCcceeeEEecCCC----cccEEEEEEEEccC
Confidence 457999999999999865 79999999 34445699999999999999999997322 13569999986553
Q ss_pred CC----CCccccceeeccccccCCCCcceeeccCCCCCCc----------ccceeeeeeecC
Q psy15955 195 FS----RDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK----------CGELLTSLCYHP 242 (475)
Q Consensus 195 ~~----~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~----------~G~l~l~l~~~~ 242 (475)
.. ++++||.+.||++++..+...+.||+|.+..+.. .+.|++++.|.+
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 22 5789999999999999888889999998766543 367888888764
No 151
>PLN03008 Phospholipase D delta
Probab=99.64 E-value=1.8e-15 Score=157.44 Aligned_cols=125 Identities=24% Similarity=0.416 Sum_probs=104.3
Q ss_pred CCCCEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEEeCCCC
Q psy15955 113 FDNSTLILRVISAKELPAKDM------------------------------------------SGTSDPYVKVALLPDKK 150 (475)
Q Consensus 113 ~~~~~L~v~v~~a~~L~~~~~------------------------------------------~~~~dpyv~v~l~~~~~ 150 (475)
..+|.|.++|++|++|+.+|. .+++||||+|.+. +.
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~ 88 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QA 88 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Cc
Confidence 367899999999999986321 2467999999993 44
Q ss_pred ceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC-
Q psy15955 151 HRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD- 229 (475)
Q Consensus 151 ~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~- 229 (475)
+..||+|+++++||+|||+|.|. +... ...|.|+|||+|.++ +++||++.|||+++..+.....|++|....++
T Consensus 89 rv~RTrVi~n~~NPvWNE~F~f~---vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 89 TLARTRVLKNSQEPLWDEKFNIS---IAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKP 163 (868)
T ss_pred ceeeEEeCCCCCCCCcceeEEEE---ecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence 56799999999999999999998 4443 358999999999997 58999999999999999888999999876653
Q ss_pred --cccceeeeeeecCCc
Q psy15955 230 --KCGELLTSLCYHPSN 244 (475)
Q Consensus 230 --~~G~l~l~l~~~~~~ 244 (475)
..|+|++++.|.|..
T Consensus 164 ~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 164 PKAETAIFIDMKFTPFD 180 (868)
T ss_pred CCCCcEEEEEEEEEEcc
Confidence 458999999998754
No 152
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.64 E-value=2e-15 Score=122.68 Aligned_cols=103 Identities=24% Similarity=0.364 Sum_probs=83.7
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
.|.|+|++|++|+..+..+.+||||++++. + .+++|++++++.||.|||+|.|.+...+ ...|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~--~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~--~~~l~v~v~d~~~- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG--K---TTQKSKVKERTNNPVWEEGFTFLVRNPE--NQELEIEVKDDKT- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEEC--C---EEEeCccccCCCCCcccceEEEEeCCCC--CCEEEEEEEECCC-
Confidence 378999999999999888999999999873 2 4578999999999999999999997533 3479999999885
Q ss_pred CCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955 326 GRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370 (475)
Q Consensus 326 ~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s 370 (475)
+++||++.+++. ++...++.....|++|..+
T Consensus 73 --~~~iG~~~i~l~------------~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 --GKSLGSLTLPLS------------ELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred --CCccEEEEEEHH------------HhhccccceeeeeEecCCC
Confidence 789999999764 3333445567788888654
No 153
>KOG1030|consensus
Probab=99.64 E-value=7.7e-16 Score=129.85 Aligned_cols=92 Identities=33% Similarity=0.494 Sum_probs=79.9
Q ss_pred ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955 244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD 323 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~ 323 (475)
-|.|+|.|++|.||...|..+++||||.+.+ ++ .+.+|+++++++||+|||.|.|.+.... ..|+++|||+|
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l--g~---q~lkT~~v~~n~NPeWNe~ltf~v~d~~---~~lkv~VyD~D 76 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL--GN---QKLKTRVVYKNLNPEWNEELTFTVKDPN---TPLKVTVYDKD 76 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEE--CC---eeeeeeeecCCCCCcccceEEEEecCCC---ceEEEEEEeCC
Confidence 4789999999999999998899999999976 22 3458889999999999999999997443 47999999999
Q ss_pred CCCCCeeeEEEEEcCcCCCC
Q psy15955 324 NIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~~~~~ 343 (475)
.+++||+||.++|++.....
T Consensus 77 ~fs~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 77 TFSSDDFMGEATIPLKPLLE 96 (168)
T ss_pred CCCcccccceeeeccHHHHH
Confidence 99999999999998865443
No 154
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.64 E-value=1.6e-15 Score=127.15 Aligned_cols=115 Identities=30% Similarity=0.392 Sum_probs=91.8
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF 195 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~ 195 (475)
.+|.|+|++|+ |...+..+.+||||+|++. +....+|++++++.||+|||+|.|. +. ....|.|+|||++..
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~-~~----~~~~l~~~V~d~~~~ 73 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVL-VT----PQSTLEFKVWSHHTL 73 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEE-eC----CCCEEEEEEEeCCCC
Confidence 47999999998 5555558899999999983 3347899999999999999999998 32 246899999999999
Q ss_pred CCCccccceeeccccccCCCC-----cceeeccCCCCC---Ccccceeeee
Q psy15955 196 SRDDSIGEVFLPLCQVDLSEK-----PTFWKALKPPAK---DKCGELLTSL 238 (475)
Q Consensus 196 ~~~~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~---~~~G~l~l~l 238 (475)
+.+++||++.++|+++..... ...|+++..... ...|+|.+.+
T Consensus 74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 899999999999999865433 235888865442 5678887764
No 155
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.64 E-value=2.3e-15 Score=129.74 Aligned_cols=108 Identities=24% Similarity=0.300 Sum_probs=84.7
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccC-CCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC-NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
.|.|+|++|++|+..+..|.+||||++++. + .+++|+++.+ +.||+|||+|.|.++.. ....|.|+|||++.
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~--~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~ 73 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG--N---QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG 73 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC--C---EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence 478999999999999999999999999883 2 3557888766 69999999999998632 23579999999999
Q ss_pred CCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955 325 IGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370 (475)
Q Consensus 325 ~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s 370 (475)
.+++++||++.|++.+.... ..++.....|++|...
T Consensus 74 ~~~dd~lG~v~i~L~~l~~~----------~~~~~~~~~W~~L~~~ 109 (150)
T cd04019 74 PNKDEPLGRAVIPLNDIERR----------VDDRPVPSRWFSLERP 109 (150)
T ss_pred CCCCCeEEEEEEEHHHCccc----------CCCCccCCceEECcCC
Confidence 88899999999988654321 1223445677777644
No 156
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.63 E-value=1.4e-15 Score=126.69 Aligned_cols=90 Identities=28% Similarity=0.435 Sum_probs=75.7
Q ss_pred EEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 247 LTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 247 L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
|.|.|++|+||+..+ ..|.+||||++++. +. .+++|++++++.||.|||+|.|.++.. ...|.|.|||++..
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QE--EVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--Cc--cEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC
Confidence 678999999999874 46789999999872 22 347899999999999999999999743 24799999999999
Q ss_pred CCCeeeEEEEEcCcCCCC
Q psy15955 326 GRNELIGRILLAGKNGSG 343 (475)
Q Consensus 326 ~~d~~lG~~~i~l~~~~~ 343 (475)
+++++||.+.+++.+...
T Consensus 75 ~~~~~iG~~~i~l~~l~~ 92 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHK 92 (121)
T ss_pred CCCceEEEEEEEHHHccC
Confidence 999999999998765543
No 157
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=9.8e-16 Score=125.69 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeecccccc
Q psy15955 133 MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212 (475)
Q Consensus 133 ~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~ 212 (475)
..|.+||||+|++. +...++|++++++.||+|||.|.|. +.+.....|.|+|||++.. ++++||.+.++|+++.
T Consensus 9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~---v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFL---VTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLI 82 (111)
T ss_pred cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEE---ecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHH
Confidence 56889999999993 3345799999999999999999997 3344457899999999988 8999999999999985
Q ss_pred C-CCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955 213 L-SEKPTFWKALKPPAKDKCGELLTSLCYHP 242 (475)
Q Consensus 213 ~-~~~~~~~~~L~~~~~~~~G~l~l~l~~~~ 242 (475)
. ......|++|.. ...|+|++++.|.|
T Consensus 83 ~~~~~~~~w~~L~~---~~~G~i~~~~~~~p 110 (111)
T cd04052 83 DATSVGQQWFPLSG---NGQGRIRISALWKP 110 (111)
T ss_pred hhhhccceeEECCC---CCCCEEEEEEEEec
Confidence 4 344578999975 46799999999976
No 158
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.63 E-value=4.1e-15 Score=125.55 Aligned_cols=117 Identities=27% Similarity=0.408 Sum_probs=94.3
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEEeCCC---CceEEeeeecCCC-CceeeeeEEeecccccccccceEEEEEE
Q psy15955 117 TLILRVISAKELPAKD--MSGTSDPYVKVALLPDK---KHRLETKIKRRTL-NPRWNETLYFEGFPIQKLQSRVLHLHVF 190 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~--~~~~~dpyv~v~l~~~~---~~~~kT~v~~~~~-nP~w~e~f~f~~~~~~~~~~~~L~~~V~ 190 (475)
.|.|+|++|++|+..+ ..+.+||||++++.+.+ ..+++|+++.++. ||.|||+|.|. +. ......|.|+||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~--~~~~~~l~~~V~ 79 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VT--VPELAFLRFVVY 79 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-Ee--CCCeEEEEEEEE
Confidence 6899999999999888 57889999999996443 3568999988765 99999999998 33 333457999999
Q ss_pred eeCCCCCCccccceeeccccccCCCCcceeeccCCCCC--Ccccceeeeeee
Q psy15955 191 DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK--DKCGELLTSLCY 240 (475)
Q Consensus 191 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~G~l~l~l~~ 240 (475)
|.+.. ++++||++.++++++..+ ..|++|....+ ...|.|.+.+..
T Consensus 80 d~~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 80 DEDSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred eCCCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 99987 889999999999999543 46888877655 456788777654
No 159
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.63 E-value=4e-15 Score=126.36 Aligned_cols=96 Identities=28% Similarity=0.416 Sum_probs=82.3
Q ss_pred ecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEE
Q psy15955 240 YHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV 319 (475)
Q Consensus 240 ~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V 319 (475)
+.+..+.|.|+|++|++|+..+..|.+||||++++. ..+++|++++++.||.|||+|.|.+.. +....|.|+|
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V 82 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITV 82 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEEecC--ccCCEEEEEE
Confidence 345678999999999999999999999999999872 235799999999999999999999863 3345799999
Q ss_pred EeccCCCCCeeeEEEEEcCcCCC
Q psy15955 320 MDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 320 ~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
||++..++|++||++.+++.+..
T Consensus 83 ~D~d~~~~d~~lG~~~i~l~~l~ 105 (136)
T cd08375 83 FDRDFFSPDDFLGRTEIRVADIL 105 (136)
T ss_pred EECCCCCCCCeeEEEEEEHHHhc
Confidence 99999999999999999885543
No 160
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.62 E-value=1.9e-15 Score=129.87 Aligned_cols=107 Identities=29% Similarity=0.462 Sum_probs=85.4
Q ss_pred eecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCcee------------------------eeeeecccccCCCC
Q psy15955 239 CYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKR------------------------IEKRKTQIFKCNLN 294 (475)
Q Consensus 239 ~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~------------------------~~~~~T~~~~~t~n 294 (475)
...|..+.|.|+|++|++|...|..|.+||||++++.+..+. ...++|++++++.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 456778999999999999999999999999999988543211 13478999999999
Q ss_pred CeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955 295 PVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD 352 (475)
Q Consensus 295 P~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~ 352 (475)
|.|||+|.|.+.. +....|.|+|||++ +++||++.+++.+..+ ...++|+.
T Consensus 102 P~WnE~F~f~v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~ 152 (153)
T cd08676 102 PVWNETFRFEVED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFK 152 (153)
T ss_pred CccccEEEEEecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEe
Confidence 9999999999853 34568999999987 8999999998866552 23455543
No 161
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=2.2e-15 Score=129.36 Aligned_cols=92 Identities=25% Similarity=0.403 Sum_probs=76.4
Q ss_pred eEEEEEEeeccCcccccCC--------------CccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955 246 VLTITLLKARNLKAKDING--------------KSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR 311 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~--------------~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~ 311 (475)
.|.|+|++|++|+.++..+ .+||||+|.+. ++ +.+|++++++.||+|||+|.|.+.....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~--g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~~- 74 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA--GQ---KVKTSVKKNSYNPEWNEQIVFPEMFPPL- 74 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC--CE---eeecceEcCCCCCCcceEEEEEeeCCCc-
Confidence 3789999999999988543 68999999763 32 3589999999999999999999754443
Q ss_pred cceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
...|.|+|||++..++|++||.+.+++.+...
T Consensus 75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 34799999999999999999999999876544
No 162
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.62 E-value=2.5e-15 Score=130.91 Aligned_cols=106 Identities=27% Similarity=0.408 Sum_probs=85.5
Q ss_pred eeEEEEEEeeccCcccc------------------------------cCCCccceEEEEEEeCceeeeeeecccccCCCC
Q psy15955 245 SVLTITLLKARNLKAKD------------------------------INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLN 294 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~n 294 (475)
|.|.|+|++|++|+.+| ..|++||||+|++. +. ...+|++++++.|
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~--~~~rT~v~~~~~n 82 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GA--RVARTRVIENSEN 82 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--Ce--EeeEEEEeCCCCC
Confidence 68999999999999887 34678999999873 22 3468999999999
Q ss_pred CeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCC
Q psy15955 295 PVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPR 358 (475)
Q Consensus 295 P~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~ 358 (475)
|.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.+...+...+.|.++....+
T Consensus 83 P~WnE~F~~~~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~ 142 (158)
T cd04015 83 PVWNESFHIYCAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNG 142 (158)
T ss_pred CccceEEEEEccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCC
Confidence 99999999988532 246999999999875 5899999999988776666677777765433
No 163
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=5.3e-15 Score=126.44 Aligned_cols=114 Identities=28% Similarity=0.423 Sum_probs=90.7
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
|.|.|.|++|++|+..+. +.+||||++++. + .+++|++++++.||.|||+|.|.++.. ...|.|+|||++.
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g--~---~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~ 72 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG--N---QKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDT 72 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC--C---EEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCC
Confidence 679999999999998887 889999999872 2 357899999999999999999998643 4579999999999
Q ss_pred CCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955 325 IGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP 369 (475)
Q Consensus 325 ~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~ 369 (475)
+++|++||++.+++.+........+..++ ..++.+..|.+-..
T Consensus 73 ~~~dd~iG~a~i~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~ 115 (145)
T cd04038 73 FSKDDSMGEAEIDLEPLVEAAKLDHLRDT--PGGTQIKKVLPSVE 115 (145)
T ss_pred CCCCCEEEEEEEEHHHhhhhhhhhccccC--CCCEEEEEEecCCC
Confidence 99999999999998776654444333222 23556677777543
No 164
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.61 E-value=3.9e-15 Score=122.13 Aligned_cols=92 Identities=32% Similarity=0.510 Sum_probs=77.0
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---CceEEeeeecCCCCceeeeeEEeecccccccc----cceEEEEEEe
Q psy15955 119 ILRVISAKELPAKDMSGTSDPYVKVALLPDK---KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ----SRVLHLHVFD 191 (475)
Q Consensus 119 ~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~----~~~L~~~V~d 191 (475)
.+..++|++|+..+..+.+||||+|++.+.+ ...++|+++++++||+|| +|.|. ...+. ...|.|+|||
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEEE
Confidence 4556899999999999999999999986543 235799999999999999 67765 33332 4689999999
Q ss_pred eCCCCCCccccceeeccccccCC
Q psy15955 192 YDRFSRDDSIGEVFLPLCQVDLS 214 (475)
Q Consensus 192 ~d~~~~~~~iG~~~i~l~~l~~~ 214 (475)
++..+++++||++.++++++...
T Consensus 79 ~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 79 YDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred eCCCCCCcEEEEEEEEHHHHhcC
Confidence 99999999999999999999743
No 165
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=3.8e-15 Score=126.73 Aligned_cols=95 Identities=23% Similarity=0.488 Sum_probs=79.6
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc-------------ccccc
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE-------------KIREC 313 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-------------~l~~~ 313 (475)
|.|.|++|++|+.. ..+.+||||++++... ....+++|++++++.||.|||+|.|.+... ++...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57899999999988 7889999999998643 223567999999999999999999997653 33556
Q ss_pred eEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 314 SLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 314 ~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
.|.|+|||++..+++++||++.+++.+...
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~ 108 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ 108 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccC
Confidence 899999999998899999999998865543
No 166
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.61 E-value=4.3e-15 Score=125.42 Aligned_cols=91 Identities=29% Similarity=0.404 Sum_probs=78.1
Q ss_pred eeEEEEEEeeccCccccc--CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955 245 SVLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF 322 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~ 322 (475)
|.|.|.|++|++|+..+. .+.+||||++++. + .+++|++++++.||.|||+|.|.+.. .....|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~--~---~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~ 73 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG--A---QRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDK 73 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC--C---EEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEEC
Confidence 578999999999999988 8899999999862 2 35689999999999999999999864 2345899999999
Q ss_pred cCCCCCeeeEEEEEcCcCCC
Q psy15955 323 DNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 323 ~~~~~d~~lG~~~i~l~~~~ 342 (475)
+..+++++||++.+++.+..
T Consensus 74 ~~~~~~~~lG~~~i~l~~~~ 93 (128)
T cd04024 74 DRFAGKDYLGEFDIALEEVF 93 (128)
T ss_pred CCCCCCCcceEEEEEHHHhh
Confidence 99889999999999875543
No 167
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.60 E-value=3.8e-15 Score=125.23 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=77.6
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG 326 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~ 326 (475)
|.|+|++|+||+. ..|.+||||++++.. ...+++|++++++.||.|||.|.|.+... ...|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKS 72 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCC
Confidence 5799999999988 678999999998731 12357999999999999999999998642 357999999999999
Q ss_pred CCeeeEEEEEcCcCCCCCcccccc
Q psy15955 327 RNELIGRILLAGKNGSGASETKHW 350 (475)
Q Consensus 327 ~d~~lG~~~i~l~~~~~~~~~~~w 350 (475)
++++||++.+++.+.........|
T Consensus 73 ~~~~lG~~~i~l~~l~~~~~~~~~ 96 (126)
T cd08678 73 DSKFLGLAIVPFDELRKNPSGRQI 96 (126)
T ss_pred CCceEEEEEEeHHHhccCCceeEE
Confidence 999999999988655443333333
No 168
>KOG1327|consensus
Probab=99.59 E-value=1.5e-14 Score=143.52 Aligned_cols=264 Identities=22% Similarity=0.300 Sum_probs=193.2
Q ss_pred CCCCCCCCCCcEEEEEEeCCC----------------CceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEee
Q psy15955 129 PAKDMSGTSDPYVKVALLPDK----------------KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDY 192 (475)
Q Consensus 129 ~~~~~~~~~dpyv~v~l~~~~----------------~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~ 192 (475)
...|..++.||-|.+.....+ ....+|+++.+.+||.|.+.|... +-.+ ..+.|+|.++|.
T Consensus 3 ~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~-y~fE--~vQ~l~~~~~~~ 79 (529)
T KOG1327|consen 3 MAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQ-YRFE--KVQLLRFEVYDI 79 (529)
T ss_pred cccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechh-heee--eeeeEEEEEeec
Confidence 344556677777776652111 113489999999999999987654 2222 346899999998
Q ss_pred CCC----CCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccc
Q psy15955 193 DRF----SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDP 268 (475)
Q Consensus 193 d~~----~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dp 268 (475)
+.. ...+|+|++.+.+.++........-+.+++......|.|.+.++-.........-.++|++|..+|.++++||
T Consensus 80 ~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~ 159 (529)
T KOG1327|consen 80 DSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDP 159 (529)
T ss_pred CCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCc
Confidence 753 4578999999999999766655555555555556789999998877666566666688999999999999999
Q ss_pred eEEEEEEe-CceeeeeeecccccCCCCCeecceEEEeeccccccc----ceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 269 YVKVWLQF-GEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRE----CSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 269 yv~v~l~~-~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~----~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
|..++-.. ++.....++|++++++++|.|.+ |.++...++. +++++.+||++..+++++||++..++.....
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 99998753 66777899999999999999999 8888777774 7799999999999999999999987655432
Q ss_pred Cccccccccc----------ccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCch
Q psy15955 344 ASETKHWQDM----------ITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAA 398 (475)
Q Consensus 344 ~~~~~~w~~~----------~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~ 398 (475)
......|.-+ ....+.....-+.+.....|.++...+-..+..+..++..+||..
T Consensus 237 ~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p 301 (529)
T KOG1327|consen 237 PGSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDP 301 (529)
T ss_pred cCCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCC
Confidence 1011111111 111233444455555677788888888788888888888888765
No 169
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.59 E-value=6.5e-15 Score=123.62 Aligned_cols=100 Identities=21% Similarity=0.368 Sum_probs=78.5
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
..|.|.|++|+||+.. +.+||||++++. + ..+.+|++ +++.||.|||+|.|.+...++ ..+.|.|||++.
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~--~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~ 73 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLN--E--VKVARTKV-REGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAK 73 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEEC--C--EeEEEeec-CCCCCCccCCEEEEecCCCCc--CEEEEEEEECCC
Confidence 4699999999999875 468999999882 2 23357877 458999999999998654443 368899999999
Q ss_pred CCCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955 325 IGRNELIGRILLAGKNGSGASETKHWQDMI 354 (475)
Q Consensus 325 ~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~ 354 (475)
.+++++||++.+++.+...+...+.|..+.
T Consensus 74 ~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~ 103 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQNGQETDEWYPLS 103 (126)
T ss_pred CCCCCeEEEEEEEHhHccCCCcccEeEEcc
Confidence 999999999999987766555555565554
No 170
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.59 E-value=5.9e-15 Score=121.19 Aligned_cols=92 Identities=27% Similarity=0.383 Sum_probs=76.8
Q ss_pred CCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeec--ccccccceEEEEE
Q psy15955 242 PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP--WEKIRECSLNVMV 319 (475)
Q Consensus 242 ~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~--~~~l~~~~l~i~V 319 (475)
|....|+|.|++|++|+ .+.+||||++++. + .+++|++++++.||.|||+|.|.+. ..++.+..|.|+|
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V 71 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVG--G---QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISV 71 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEEC--C---EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEE
Confidence 34568999999999998 5789999999874 2 2468999999999999999999863 3345566899999
Q ss_pred EeccCCCCCeeeEEEEEcCcCCC
Q psy15955 320 MDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 320 ~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
||++.++++++||++.+++.+..
T Consensus 72 ~d~~~~~~~~~iG~~~i~l~~v~ 94 (111)
T cd04011 72 YDSRSLRSDTLIGSFKLDVGTVY 94 (111)
T ss_pred EcCcccccCCccEEEEECCcccc
Confidence 99999988999999999886543
No 171
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.59 E-value=6e-15 Score=119.48 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=69.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEee---
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDY--- 192 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~--- 192 (475)
|.|+|++|++|+ +.+||||++++.+.+ ..+.||+++++++||+|||+|.|. ++ ....|++.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~----~s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LE----GSQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eC----CCCEEEEEEEEcccc
Confidence 579999999996 458999999987643 346899999999999999999998 43 256899999998
Q ss_pred ----CCCCCCccccceeecccc
Q psy15955 193 ----DRFSRDDSIGEVFLPLCQ 210 (475)
Q Consensus 193 ----d~~~~~~~iG~~~i~l~~ 210 (475)
|..++|++||.+.+.|+-
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccCcccEEEEEEEEECH
Confidence 466789999888777744
No 172
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1.4e-14 Score=120.37 Aligned_cols=93 Identities=29% Similarity=0.469 Sum_probs=79.4
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
|.|.|.|++|++|+..+..+.+||||++++. + ..+++|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~--~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~ 73 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--G--IVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEK 73 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--C--EEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCC
Confidence 5789999999999999989999999999872 2 2457899999999999999999988643 2479999999999
Q ss_pred CCCCeeeEEEEEcCcCCCCC
Q psy15955 325 IGRNELIGRILLAGKNGSGA 344 (475)
Q Consensus 325 ~~~d~~lG~~~i~l~~~~~~ 344 (475)
.+++++||++.+++.+....
T Consensus 74 ~~~d~~IG~~~~~l~~l~~~ 93 (120)
T cd04045 74 VGKDRSLGSVEINVSDLIKK 93 (120)
T ss_pred CCCCCeeeEEEEeHHHhhCC
Confidence 99999999999988665543
No 173
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.59 E-value=1.3e-14 Score=121.25 Aligned_cols=91 Identities=33% Similarity=0.473 Sum_probs=76.3
Q ss_pred eeEEEEEEeeccCccccc------CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEE
Q psy15955 245 SVLTITLLKARNLKAKDI------NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVM 318 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~ 318 (475)
|.|.|.|++|++|+..+. .+.+||||++++. + .+++|++++++.||.|||+|.|.+... ....|.|+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~ 73 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG--A---QTFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIE 73 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC--C---EeEEccccCCCCCCcccceEEEEeCCC--CCCEEEEE
Confidence 468999999999998875 3689999999873 2 457899999999999999999988642 34579999
Q ss_pred EEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 319 VMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 319 V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
|||++.. ++++||.+.+++.+...
T Consensus 74 v~d~~~~-~~~~iG~~~i~l~~l~~ 97 (121)
T cd08391 74 LFDEDPD-KDDFLGRLSIDLGSVEK 97 (121)
T ss_pred EEecCCC-CCCcEEEEEEEHHHhcc
Confidence 9999988 89999999998865543
No 174
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.58 E-value=1e-14 Score=121.65 Aligned_cols=86 Identities=31% Similarity=0.545 Sum_probs=74.8
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG 326 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~ 326 (475)
|.|.|++|++|+..+..|.+||||++++. +. ...+|++++++.||.|||.|.|.+... ...|.|.|||++..+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~--~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NE--VIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLS 74 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CE--eeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCC
Confidence 78999999999999999999999999762 22 346899999999999999999998643 247999999999999
Q ss_pred CCeeeEEEEEcCc
Q psy15955 327 RNELIGRILLAGK 339 (475)
Q Consensus 327 ~d~~lG~~~i~l~ 339 (475)
++++||++.+++.
T Consensus 75 ~d~~iG~~~~~~~ 87 (121)
T cd04054 75 RDDVIGKVSLTRE 87 (121)
T ss_pred CCCEEEEEEEcHH
Confidence 9999999999764
No 175
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.58 E-value=1.1e-14 Score=121.46 Aligned_cols=91 Identities=29% Similarity=0.377 Sum_probs=76.1
Q ss_pred CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955 243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF 322 (475)
Q Consensus 243 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~ 322 (475)
..+.|.|+|++|++|+. +..+.+||||+|++. ++ +++|++++++.||+|||+|.|...... ....|.|+|||+
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~--~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D~ 98 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG--GQ---EKRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWDR 98 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC--Cc---cccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEeC
Confidence 45799999999999984 677889999999873 22 679999999999999999999742111 345799999999
Q ss_pred cCCCCCeeeEEEEEcCcC
Q psy15955 323 DNIGRNELIGRILLAGKN 340 (475)
Q Consensus 323 ~~~~~d~~lG~~~i~l~~ 340 (475)
+..++|++||++.+++..
T Consensus 99 d~~s~dd~IG~~~i~l~~ 116 (127)
T cd04032 99 DNGWDDDLLGTCSVVPEA 116 (127)
T ss_pred CCCCCCCeeEEEEEEecC
Confidence 999999999999998853
No 176
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.58 E-value=1.5e-14 Score=121.26 Aligned_cols=104 Identities=28% Similarity=0.441 Sum_probs=83.2
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccC-CCCCeecceEEEeeccccc-ccceEEEEEEec
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC-NLNPVFNESFSFNVPWEKI-RECSLNVMVMDF 322 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~l-~~~~l~i~V~d~ 322 (475)
|.|.|.|++|++|+..+..+.+||||++++. + ..++|++.++ +.||.|||+|.|.+..... ....|.|+|||+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 75 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR--T---QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK 75 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC--C---EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence 5789999999999999888999999999862 2 2457887774 8999999999999876532 245799999999
Q ss_pred cCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 323 DNIGRNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 323 ~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
+..+++++||++.+++.+.......+.|..+
T Consensus 76 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 76 DNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred ccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 9998999999999988766554444455443
No 177
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.58 E-value=1.3e-14 Score=120.82 Aligned_cols=85 Identities=28% Similarity=0.424 Sum_probs=72.0
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
.|.|.|++|+||+.. .+||||++++.. .+.+|++++++.||.|||+|.|.+.. +....|.|+|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~ 69 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA 69 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC
Confidence 478999999999887 689999998732 35699999999999999999999753 3456799999999977
Q ss_pred CCCeeeEEEEEcCcCCC
Q psy15955 326 GRNELIGRILLAGKNGS 342 (475)
Q Consensus 326 ~~d~~lG~~~i~l~~~~ 342 (475)
++++||++.+++.+..
T Consensus 70 -~~~~lG~~~i~l~~l~ 85 (121)
T cd08378 70 -KDDFLGGVCFDLSEVP 85 (121)
T ss_pred -cCceeeeEEEEhHhCc
Confidence 7899999999886543
No 178
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.58 E-value=1.5e-14 Score=120.61 Aligned_cols=102 Identities=27% Similarity=0.429 Sum_probs=81.8
Q ss_pred EEEeeccCcccccCCCccceEEEEEEeCc--eeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC---
Q psy15955 250 TLLKARNLKAKDINGKSDPYVKVWLQFGE--KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN--- 324 (475)
Q Consensus 250 ~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~--- 324 (475)
..++|++|+..+..+.+||||++++.... ....+++|++++++.||.|||+|.|.+..+.. ..|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~~ 82 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCcC
Confidence 34899999999999999999999997654 45567899999999999999999998654432 469999999997
Q ss_pred -CCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 325 -IGRNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 325 -~~~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
.+++++||++.+++.++...+....|.++
T Consensus 83 ~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 83 DLSDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 78999999999988665544333334333
No 179
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=1.5e-14 Score=121.02 Aligned_cols=102 Identities=32% Similarity=0.531 Sum_probs=81.2
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
.|+|.|++|++|+..+..+.+||||++++. +. ....+|++++++.||.|||+|.|.+...+ ...|.|+|||++.+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~--~~~L~~~V~d~d~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLG--KK-KINDRDNYIPNTLNPVFGKMFELEATLPG--NSILKISVMDYDLL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEEC--Ce-eccceeeEEECCCCCccceEEEEEecCCC--CCEEEEEEEECCCC
Confidence 378999999999999999999999999873 22 23467888889999999999999875332 45799999999999
Q ss_pred CCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955 326 GRNELIGRILLAGKNGSGASETKHWQDMIT 355 (475)
Q Consensus 326 ~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~ 355 (475)
+++++||++.+++.+... ..+|..+..
T Consensus 76 ~~dd~iG~~~i~l~~~~~---~~~~~~~~~ 102 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF---SKHRATCGL 102 (124)
T ss_pred CCCceeEEEEEeeccccc---chHHHhccC
Confidence 999999999998865331 235555443
No 180
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.57 E-value=3e-14 Score=120.53 Aligned_cols=92 Identities=29% Similarity=0.396 Sum_probs=76.2
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCcee--------eeeeecccccCCCCCee-cceEEEeecccccccceEE
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKR--------IEKRKTQIFKCNLNPVF-NESFSFNVPWEKIRECSLN 316 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--------~~~~~T~~~~~t~nP~w-~e~f~f~v~~~~l~~~~l~ 316 (475)
.+.|.+++|+||+ .+..|++||||++++.+++.. ..+++|+++++++||+| ||+|.|.+... ..|.
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT----DVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC----CEEE
Confidence 3678999999998 677899999999999765543 24689999999999999 99999998643 3699
Q ss_pred EEEEeccCCCC---CeeeEEEEEcCcCCC
Q psy15955 317 VMVMDFDNIGR---NELIGRILLAGKNGS 342 (475)
Q Consensus 317 i~V~d~~~~~~---d~~lG~~~i~l~~~~ 342 (475)
|+|||++..++ +++||++.+++.+..
T Consensus 77 v~V~D~~~~~~~~~~d~lG~~~i~l~~l~ 105 (137)
T cd08691 77 IEVKDKFAKSRPIIRRFLGKLSIPVQRLL 105 (137)
T ss_pred EEEEecCCCCCccCCceEEEEEEEHHHhc
Confidence 99999876444 799999999886544
No 181
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=1.5e-14 Score=122.92 Aligned_cols=94 Identities=34% Similarity=0.488 Sum_probs=79.5
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeC--ceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFG--EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD 323 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~ 323 (475)
.|.|+|++|++|+..+..+.+||||++++... +....+++|++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECC
Confidence 37899999999999998899999999998643 2233456899999999999999999998653 246999999999
Q ss_pred CCCCCeeeEEEEEcCcCCC
Q psy15955 324 NIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~~~~ 342 (475)
..+++++||++.+++.+..
T Consensus 78 ~~~~~~~iG~~~i~l~~l~ 96 (133)
T cd04033 78 RLTRDDFLGQVEVPLNNLP 96 (133)
T ss_pred CCCCCCeeEEEEEEHHHCC
Confidence 9999999999999876544
No 182
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.56 E-value=2.8e-14 Score=118.75 Aligned_cols=90 Identities=30% Similarity=0.452 Sum_probs=77.1
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
|.|.|+|++|++|+..+..+.+||||++++. + ..++|++++++.||.|+|+|.|.+.. + ...|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~~ 72 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV--N---ARLQTHTIYKTLNPEWNKIFTFPIKD--I-HDVLEVTVYDEDK 72 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC--C---EeeecceecCCcCCccCcEEEEEecC--c-CCEEEEEEEECCC
Confidence 5789999999999999988999999999873 2 24689999999999999999999853 2 3579999999999
Q ss_pred CCCCeeeEEEEEcCcCCC
Q psy15955 325 IGRNELIGRILLAGKNGS 342 (475)
Q Consensus 325 ~~~d~~lG~~~i~l~~~~ 342 (475)
.+++++||++.+++.+..
T Consensus 73 ~~~~~~iG~~~~~l~~~~ 90 (119)
T cd08377 73 DKKPEFLGKVAIPLLSIK 90 (119)
T ss_pred CCCCceeeEEEEEHHHCC
Confidence 889999999999875543
No 183
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.56 E-value=2e-14 Score=120.26 Aligned_cols=89 Identities=20% Similarity=0.343 Sum_probs=76.6
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
.|+|+|++|++|+..+..+.+||||++++. + ..+++|++++++.||.|||+|.|.+.. ...|.|+|||++..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~--~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~ 72 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD--G--GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKF 72 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC--C--ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCC
Confidence 378999999999999999999999999873 2 245789999999999999999999964 35799999999988
Q ss_pred CC--CeeeEEEEEcCcCCC
Q psy15955 326 GR--NELIGRILLAGKNGS 342 (475)
Q Consensus 326 ~~--d~~lG~~~i~l~~~~ 342 (475)
++ +++||++.+++.+..
T Consensus 73 ~~~~d~~lG~~~i~l~~l~ 91 (123)
T cd08382 73 KKKDQGFLGCVRIRANAVL 91 (123)
T ss_pred CCCCCceEeEEEEEHHHcc
Confidence 75 589999999886643
No 184
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.56 E-value=2.8e-14 Score=120.04 Aligned_cols=91 Identities=34% Similarity=0.485 Sum_probs=77.8
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
.|.|+|++|++|+..+..+.+||||++++... ....++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG--KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCC--CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCC
Confidence 57899999999999999999999999976322 23457999999999999999999998754 245799999999998
Q ss_pred CCCeeeEEEEEcCcC
Q psy15955 326 GRNELIGRILLAGKN 340 (475)
Q Consensus 326 ~~d~~lG~~~i~l~~ 340 (475)
+++++||++.+++..
T Consensus 78 ~~~~~iG~~~i~l~~ 92 (126)
T cd04043 78 GKHDLCGRASLKLDP 92 (126)
T ss_pred CCCceEEEEEEecCH
Confidence 899999999998754
No 185
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.56 E-value=1.9e-14 Score=116.51 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=70.0
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec----
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF---- 322 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~---- 322 (475)
|.|+|.+|+||+ +.+||||++++.+.+....+.+|+++++++||+|||+|.|.++. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEccccc
Confidence 579999999995 45899999988665543457899999999999999999999863 34899999998
Q ss_pred ---cCCCCCeeeEEEEEcC
Q psy15955 323 ---DNIGRNELIGRILLAG 338 (475)
Q Consensus 323 ---~~~~~d~~lG~~~i~l 338 (475)
+..++|+++|...+.+
T Consensus 72 ~~~d~~~~d~~~G~g~i~L 90 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQL 90 (118)
T ss_pred ccccccCcccEEEEEEEEE
Confidence 4668899999988866
No 186
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.55 E-value=4.4e-14 Score=120.22 Aligned_cols=108 Identities=25% Similarity=0.419 Sum_probs=82.5
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeec-c----cccc--cceEEEE
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP-W----EKIR--ECSLNVM 318 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~-~----~~l~--~~~l~i~ 318 (475)
.|+|.|++|++|+..+..|.+||||+|++. + .+++|++++++.||.|||.|.|.+. . +++. ...|.|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL--N---QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC--C---eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 689999999999999999999999999873 2 3568999999999999999999742 1 1111 2468999
Q ss_pred EEeccCCCCCeeeEEEEEc-CcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955 319 VMDFDNIGRNELIGRILLA-GKNGSGASETKHWQDMITKPRQTIVQWHRLKP 369 (475)
Q Consensus 319 V~d~~~~~~d~~lG~~~i~-l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~ 369 (475)
|||++..++|++||++.+. +..... ..++.....|++|..
T Consensus 77 V~d~d~~~~d~~iG~~~i~~~~~~~~-----------~~~~~~~~~W~~L~~ 117 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVAKPLVKLDL-----------EEDFPPKLQWFPIYK 117 (135)
T ss_pred EEeCcCCCCCccceEEEeeeeeeccc-----------CCCCCCCceEEEeec
Confidence 9999999999999999873 211111 013455678888863
No 187
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=2.6e-14 Score=120.37 Aligned_cols=95 Identities=28% Similarity=0.473 Sum_probs=75.7
Q ss_pred EEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCee
Q psy15955 251 LLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNEL 330 (475)
Q Consensus 251 v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~ 330 (475)
|++|++|+. ..+.+||||++++. + .+++|++++++.||.|||+|.|.+.........|.|+|||++..+++++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~--~---~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~ 74 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR--G---VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRL 74 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC--C---EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCce
Confidence 688999998 67889999999872 2 3468999999999999999999986443345689999999999999999
Q ss_pred eEEEEEcCcCCCCCcccccccc
Q psy15955 331 IGRILLAGKNGSGASETKHWQD 352 (475)
Q Consensus 331 lG~~~i~l~~~~~~~~~~~w~~ 352 (475)
||++.+++.+.........|..
T Consensus 75 iG~~~~~l~~l~~~~~~~~~~~ 96 (127)
T cd08373 75 IGSATVSLQDLVSEGLLEVTEP 96 (127)
T ss_pred EEEEEEEhhHcccCCceEEEEe
Confidence 9999998866554333333333
No 188
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.54 E-value=3.9e-14 Score=120.17 Aligned_cols=92 Identities=24% Similarity=0.317 Sum_probs=77.0
Q ss_pred ceeEEEEEEeeccCcccccC----------CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccc
Q psy15955 244 NSVLTITLLKARNLKAKDIN----------GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIREC 313 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~~~~----------~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~ 313 (475)
.+.|.|+|++|++|...+.. +.+||||++++. ++ ...+|++++++.||.|||+|.|.+.. ..
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~--~~~kT~~~~~t~~P~Wne~f~~~v~~----~~ 74 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DT--HIGKTSTKPKTNSPVWNEEFTTEVHN----GR 74 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CE--EEeEEeEcCCCCCCCcceeEEEEcCC----CC
Confidence 46899999999999988752 679999999873 32 23588888999999999999999962 35
Q ss_pred eEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 314 SLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 314 ~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
.|.|.|||++..+++++||++.+++.+...
T Consensus 75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~ 104 (132)
T cd04014 75 NLELTVFHDAAIGPDDFVANCTISFEDLIQ 104 (132)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEEhHHhcc
Confidence 799999999988899999999998866553
No 189
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=3.4e-14 Score=117.51 Aligned_cols=101 Identities=37% Similarity=0.529 Sum_probs=81.4
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG 326 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~ 326 (475)
|+|.|++|++|+..+..+.+||||++++. + ...++|+++.++.+|.|||+|.|.+... ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~--~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~ 74 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--G--EKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGG 74 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--C--CcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCC
Confidence 57899999999999888899999999873 2 2347899999999999999999998643 3457999999999998
Q ss_pred CCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 327 RNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 327 ~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
++++||++.+++.+...+.....|.++
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L 101 (115)
T cd04040 75 KDDLLGSAYIDLSDLEPEETTELTLPL 101 (115)
T ss_pred CCCceEEEEEEHHHcCCCCcEEEEEEC
Confidence 999999999988665543333344433
No 190
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.54 E-value=6.1e-14 Score=118.01 Aligned_cols=88 Identities=34% Similarity=0.529 Sum_probs=74.1
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
.|.|.|++|++|+..+..+.+||||++++. + .+++|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~ 73 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG--K---TKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDD 73 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC--C---EeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCC
Confidence 588999999999999989999999999872 2 346899999999999999999987532 24699999999853
Q ss_pred -----------CCCeeeEEEEEcCcCC
Q psy15955 326 -----------GRNELIGRILLAGKNG 341 (475)
Q Consensus 326 -----------~~d~~lG~~~i~l~~~ 341 (475)
+++++||.+.+++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~ 100 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTL 100 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHc
Confidence 4689999999987544
No 191
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.51 E-value=5.3e-14 Score=118.18 Aligned_cols=94 Identities=26% Similarity=0.360 Sum_probs=78.3
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeeccccc--ccceEEEEEEec
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPWEKI--RECSLNVMVMDF 322 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~l--~~~~l~i~V~d~ 322 (475)
.|.|+|++|++|+..+..+.+||||+|++.. ..+++|+++. ++.||.|||.|.|.++...+ ....|.|+|||+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 4789999999999999889999999998743 2345788875 58999999999999976532 245799999999
Q ss_pred cCCCCCeeeEEEEEcCcCCCC
Q psy15955 323 DNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 323 ~~~~~d~~lG~~~i~l~~~~~ 343 (475)
+.++++++||++.+++.+...
T Consensus 77 ~~~~~~~~lG~~~i~l~~l~~ 97 (125)
T cd04051 77 RPSLGDKLIGEVRVPLKDLLD 97 (125)
T ss_pred CCCCCCCcEEEEEEEHHHhhc
Confidence 998889999999998876554
No 192
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=8.8e-14 Score=116.68 Aligned_cols=96 Identities=33% Similarity=0.413 Sum_probs=79.4
Q ss_pred eeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955 245 SVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD 323 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~ 323 (475)
|.|.|+|++|++|+..+ ..+.+||||++.+... ..+++|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~---~~~~l~~~v~d~~ 75 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNS---LTEPLNLTVYDFN 75 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCC---CCCEEEEEEEecC
Confidence 67999999999999765 4567899999987432 356799999999999999999999872 2457999999999
Q ss_pred CCCCCeeeEEEEEcCcCCCCCcc
Q psy15955 324 NIGRNELIGRILLAGKNGSGASE 346 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~~~~~~~~ 346 (475)
..+++++||.+.+++.+......
T Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~ 98 (124)
T cd04044 76 DKRKDKLIGTAEFDLSSLLQNPE 98 (124)
T ss_pred CCCCCceeEEEEEEHHHhccCcc
Confidence 98899999999999876655433
No 193
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.51 E-value=8.3e-14 Score=114.18 Aligned_cols=91 Identities=26% Similarity=0.472 Sum_probs=74.3
Q ss_pred EEEEeeccCcccccCCCccceEEEEEEeCc-eeeeeeecccccCCCCCeecceEEEeecccccc----cceEEEEEEecc
Q psy15955 249 ITLLKARNLKAKDINGKSDPYVKVWLQFGE-KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR----ECSLNVMVMDFD 323 (475)
Q Consensus 249 v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~----~~~l~i~V~d~~ 323 (475)
+..++|++|+..+..+.+||||+|++...+ +....++|++++++.||.|| +|.|.+ .+++ ...|.|+|||++
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~--~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL--QKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH--HHhcCCCcCCEEEEEEEEeC
Confidence 445899999999999999999999986543 34567899999999999999 555553 3333 457999999999
Q ss_pred CCCCCeeeEEEEEcCcCCC
Q psy15955 324 NIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~~~~ 342 (475)
..++|++||++.+++.++.
T Consensus 81 ~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 81 SSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCCcEEEEEEEEHHHHh
Confidence 9999999999999875543
No 194
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.51 E-value=1.4e-13 Score=113.06 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=76.6
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
+.|.|.|++|++|+..+ ..||||++.+ ++ .+.+|++.++ .||.|||.|.|.+.. .. ..|.|+|||++.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~--g~---~k~kT~v~~~-~nP~WnE~F~F~~~~--~~-~~L~v~V~dkd~ 69 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV--QN---VKSTTIAVRG-SQPCWEQDFMFEINR--LD-LGLVIELWNKGL 69 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEE--CC---EEeEeeECCC-CCCceeeEEEEEEcC--CC-CEEEEEEEeCCC
Confidence 57999999999997654 4589999977 22 3457888877 599999999999853 22 349999999986
Q ss_pred CCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955 325 IGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370 (475)
Q Consensus 325 ~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s 370 (475)
+ +|++||++.|+|.+..... ......|++|.+.
T Consensus 70 ~-~DD~lG~v~i~L~~v~~~~------------~~~~~~Wy~L~~~ 102 (127)
T cd08394 70 I-WDTLVGTVWIPLSTIRQSN------------EEGPGEWLTLDSE 102 (127)
T ss_pred c-CCCceEEEEEEhHHcccCC------------CCCCCccEecChH
Confidence 5 8999999999986544321 2233567777743
No 195
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.50 E-value=1.3e-13 Score=107.17 Aligned_cols=85 Identities=39% Similarity=0.671 Sum_probs=73.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|+|++|++|+..+..+.+||||++.+.......++|+++.++.+|.|+|+|.|. +.... ...|.|+|||.+..++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~~~V~~~~~~~~ 77 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFP-LDDPD--LDSLSFEVWDKDSFGK 77 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEE-ESHGC--GTEEEEEEEEETSSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeee-eeccc--ccceEEEEEECCCCCC
Confidence 78999999999998888899999999997554456899999999999999999998 44443 4459999999999988
Q ss_pred Ccccccee
Q psy15955 198 DDSIGEVF 205 (475)
Q Consensus 198 ~~~iG~~~ 205 (475)
+++||++.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999874
No 196
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.49 E-value=2.5e-13 Score=114.11 Aligned_cols=88 Identities=22% Similarity=0.352 Sum_probs=75.0
Q ss_pred ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955 244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD 323 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~ 323 (475)
...|+|+|++|++|...+..|.+||||++++ ++ ..++|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~--~~---~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~ 73 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKC--EG---ESVRSPVQKDTLSPEFDTQAIFYRKKP---RSPIKIQVWNSN 73 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEE--CC---EEEEeCccCCCCCCcccceEEEEecCC---CCEEEEEEEECC
Confidence 3578999999999999999999999999975 23 246899999999999999999987532 457999999998
Q ss_pred CCCCCeeeEEEEEcCcC
Q psy15955 324 NIGRNELIGRILLAGKN 340 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~~ 340 (475)
..+ |++||.+.+++..
T Consensus 74 ~~~-d~~lG~~~~~l~~ 89 (126)
T cd04046 74 LLC-DEFLGQATLSADP 89 (126)
T ss_pred CCC-CCceEEEEEeccc
Confidence 874 8999999998753
No 197
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=2.4e-13 Score=113.37 Aligned_cols=97 Identities=29% Similarity=0.394 Sum_probs=82.2
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEEeCCCCceEEeeeecCCCC--ceeeeeEEeecccc--------------
Q psy15955 118 LILRVISAKELPAKD--MSG--TSDPYVKVALLPDKKHRLETKIKRRTLN--PRWNETLYFEGFPI-------------- 177 (475)
Q Consensus 118 L~v~v~~a~~L~~~~--~~~--~~dpyv~v~l~~~~~~~~kT~v~~~~~n--P~w~e~f~f~~~~~-------------- 177 (475)
|+|.|..|++++..+ ..| .+||||++.+.+....+++|.|.++++| |+||++|.|. ++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeecc
Confidence 789999999976543 356 4999999999766556789999999999 9999999988 555
Q ss_pred -------cccccceEEEEEEeeCCCCCCccccceeeccccccCCC
Q psy15955 178 -------QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE 215 (475)
Q Consensus 178 -------~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~ 215 (475)
+.+....|.++|||.|.+++|++||++.++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 44556789999999999999999999999999886554
No 198
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.47 E-value=2.7e-13 Score=113.03 Aligned_cols=96 Identities=28% Similarity=0.366 Sum_probs=80.1
Q ss_pred eEEEEEEeeccCcccc--cCC--CccceEEEEEEeCceeeeeeecccccCCCC--CeecceEEEeecc------------
Q psy15955 246 VLTITLLKARNLKAKD--ING--KSDPYVKVWLQFGEKRIEKRKTQIFKCNLN--PVFNESFSFNVPW------------ 307 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~--~~~--~~dpyv~v~l~~~~~~~~~~~T~~~~~t~n--P~w~e~f~f~v~~------------ 307 (475)
.|+|.|++|++++..+ ..| .+||||++++.+. ...+++|.++.+++| |.||+.|.|+++.
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~ 78 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKK 78 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEee
Confidence 3789999999966443 355 4999999999765 345789999999999 9999999999766
Q ss_pred ---------cccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 308 ---------EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 308 ---------~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
+.+....|.|+|||.|.+++|++||.+++++.....
T Consensus 79 ~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 79 EHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred ccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 556678899999999999999999999998865443
No 199
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=1.3e-13 Score=156.41 Aligned_cols=120 Identities=18% Similarity=0.317 Sum_probs=99.6
Q ss_pred CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc-cceEEEEEEee
Q psy15955 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ-SRVLHLHVFDY 192 (475)
Q Consensus 114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~-~~~L~~~V~d~ 192 (475)
..|.|.|+|++|++|. +..+.+||||++.+.. ..+.||++++++.||+|||+|.|. ++++. ...|.|+|||+
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~---~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWA---FDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeee---ecCCCCCCceEEEEEec
Confidence 4678999999999998 4478999999999942 336689999999999999999976 33432 35699999999
Q ss_pred CCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccc---eeeeeeecC
Q psy15955 193 DRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGE---LLTSLCYHP 242 (475)
Q Consensus 193 d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~---l~l~l~~~~ 242 (475)
|.+++ +.||.+.|+|.++..++....||+|.+ ++++.|+ |++.+.|.+
T Consensus 2051 d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCC-CCCceEEEEHHHHhcCceeeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 99965 589999999999998888899999985 3456677 998887754
No 200
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.45 E-value=6.6e-13 Score=103.08 Aligned_cols=85 Identities=46% Similarity=0.662 Sum_probs=74.7
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG 326 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~ 326 (475)
|.|+|++|+||+..+..+..||||++++..... ..++|++++++.+|.|+++|.|.+...+.. .|.|+|||++..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCCC
Confidence 689999999999988888999999999865444 568999999999999999999998766654 4999999999999
Q ss_pred CCeeeEEEE
Q psy15955 327 RNELIGRIL 335 (475)
Q Consensus 327 ~d~~lG~~~ 335 (475)
++++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 999999974
No 201
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.44 E-value=8.4e-13 Score=109.50 Aligned_cols=84 Identities=32% Similarity=0.547 Sum_probs=70.3
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG 326 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~ 326 (475)
|.|+|++|++|+.. +.+||||.+++. + ..+++|+++++ .||.|||+|.|.++..++....|.|.+||.+...
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~--~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--Q--VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--C--EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 78999999999876 789999999873 2 23468999988 9999999999999876666667999999988777
Q ss_pred CCeeeEEEEEcC
Q psy15955 327 RNELIGRILLAG 338 (475)
Q Consensus 327 ~d~~lG~~~i~l 338 (475)
++.++|.+.|..
T Consensus 74 ~~~~~g~v~l~~ 85 (117)
T cd08383 74 RDIVIGKVALSK 85 (117)
T ss_pred CeeEEEEEEecC
Confidence 788899887743
No 202
>PLN03008 Phospholipase D delta
Probab=99.44 E-value=2.5e-13 Score=141.61 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=88.7
Q ss_pred CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 264 GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 264 ~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
+++||||+|.+. +. .+.||++++++.||+|||+|.|.|... ...|.|+|||+|.++ +++||++.|++.++..
T Consensus 75 ~tSDPYV~I~Lg--~~--rv~RTrVi~n~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~ 146 (868)
T PLN03008 75 ITSDPYVTVVVP--QA--TLARTRVLKNSQEPLWDEKFNISIAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIAS 146 (868)
T ss_pred CCCCceEEEEEC--Cc--ceeeEEeCCCCCCCCcceeEEEEecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCC
Confidence 467999999882 22 345899999999999999999998753 247999999999997 5899999999999988
Q ss_pred CcccccccccccCCCcceeeeeccCCCCcccceeecccce
Q psy15955 344 ASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVS 383 (475)
Q Consensus 344 ~~~~~~w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~ 383 (475)
++..+.|.+++...++....-..|.-+-.|..+.+...+.
T Consensus 147 Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~~~ 186 (868)
T PLN03008 147 GERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186 (868)
T ss_pred CCceEEEEEccccCCCCCCCCcEEEEEEEEEEcccccccc
Confidence 8889999999987776665556665555555555544333
No 203
>KOG1326|consensus
Probab=99.44 E-value=2.6e-13 Score=140.93 Aligned_cols=248 Identities=25% Similarity=0.368 Sum_probs=163.7
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCce--EEeeeecCCCCceeeeeEEeecccccccccceEEEEEEee
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHR--LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDY 192 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~--~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~ 192 (475)
..-++|.|++|-+|.+.|.+|.+|||+++.++ +.. -++..+.+++||+|.+-|.+. ...+....|.++|||+
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~---~~lp~ek~l~v~vyd~ 685 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELE---CLLPFEKDLIVEVYDH 685 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhh---cccchhhcceeEEEEe
Confidence 34578999999999999999999999999983 222 367789999999999998876 3334456899999999
Q ss_pred CCCCCCccccceeeccccccCCC--------------CcceeeccCCCC----------C--------------------
Q psy15955 193 DRFSRDDSIGEVFLPLCQVDLSE--------------KPTFWKALKPPA----------K-------------------- 228 (475)
Q Consensus 193 d~~~~~~~iG~~~i~l~~l~~~~--------------~~~~~~~L~~~~----------~-------------------- 228 (475)
|..+.|+.||+..+.|+.--... ....|+.-..+. +
T Consensus 686 D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~ 765 (1105)
T KOG1326|consen 686 DLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESD 765 (1105)
T ss_pred ecccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhh
Confidence 99999999999999987632110 011233221100 0
Q ss_pred -------------------------------------------------CcccceeeeeeecC---------------Cc
Q psy15955 229 -------------------------------------------------DKCGELLTSLCYHP---------------SN 244 (475)
Q Consensus 229 -------------------------------------------------~~~G~l~l~l~~~~---------------~~ 244 (475)
-..|++.+=+.+.| ..
T Consensus 766 ~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~ 845 (1105)
T KOG1326|consen 766 IYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKK 845 (1105)
T ss_pred hhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhh
Confidence 01133333332222 24
Q ss_pred eeEEEEEEeeccCcccccC----CCccceEEEEEEeCceeeeeeecccccCCCC--CeecceEEEe---ecccccc----
Q psy15955 245 SVLTITLLKARNLKAKDIN----GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLN--PVFNESFSFN---VPWEKIR---- 311 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~n--P~w~e~f~f~---v~~~~l~---- 311 (475)
..++|.|+.-.+....+.. .++|.||+-++..+. -.+++|.+.+.++. -.||-.|.|. .+.++++
T Consensus 846 ~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gde--e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~k 923 (1105)
T KOG1326|consen 846 YELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDE--EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAK 923 (1105)
T ss_pred eeEEEEEeeccceeecCccceeeeccceEEecccccch--hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhh
Confidence 5688988888877665533 368999998876443 34667888876642 2344444443 3333332
Q ss_pred --------------cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccC--------CCcceeeeeccCC
Q psy15955 312 --------------ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITK--------PRQTIVQWHRLKP 369 (475)
Q Consensus 312 --------------~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~--------p~~~~s~w~~L~~ 369 (475)
-..|.|+|||.|.+++|+|||..+++|.+...+.....-..+... .++.+.+|+++..
T Consensus 924 ke~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a 1003 (1105)
T KOG1326|consen 924 KEYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQA 1003 (1105)
T ss_pred hhhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeee
Confidence 145999999999999999999999998764332211111111111 2467788999886
Q ss_pred C
Q psy15955 370 D 370 (475)
Q Consensus 370 s 370 (475)
.
T Consensus 1004 ~ 1004 (1105)
T KOG1326|consen 1004 E 1004 (1105)
T ss_pred c
Confidence 5
No 204
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.42 E-value=7.4e-13 Score=112.52 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=82.4
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
..|.|.|++|++|+.++ +|||.+.+. + ....||+++.++.||.|+|.|.|.+.... ..|.|.||+.+.
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~--~~vaRT~v~~~~~nP~W~E~F~f~~~~~~---~~l~v~v~k~~~ 78 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLD--K--TLYARTTSKLKTDTLFWGEHFEFSNLPPV---SVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEEC--C--EEEEEEEEEcCCCCCcceeeEEecCCCcc---cEEEEEEEEccC
Confidence 57899999999998865 899999873 2 23458999999999999999999764321 369999986543
Q ss_pred -CC---CCeeeEEEEEcCcCCCCCcccccccccccCCCcc
Q psy15955 325 -IG---RNELIGRILLAGKNGSGASETKHWQDMITKPRQT 360 (475)
Q Consensus 325 -~~---~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~ 360 (475)
.+ ++.+||.+.|++.+...+...+.|+.+....+..
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~ 118 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG 118 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence 22 5799999999998888888888888887655543
No 205
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.42 E-value=1.9e-12 Score=109.18 Aligned_cols=95 Identities=29% Similarity=0.370 Sum_probs=78.7
Q ss_pred eeEEEEEEeeccCcccc--cCCCccceEEEEEEeCce-eeeeeecccccCCC-CCeecceEEEeecccccccceEEEEEE
Q psy15955 245 SVLTITLLKARNLKAKD--INGKSDPYVKVWLQFGEK-RIEKRKTQIFKCNL-NPVFNESFSFNVPWEKIRECSLNVMVM 320 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~--~~~~~dpyv~v~l~~~~~-~~~~~~T~~~~~t~-nP~w~e~f~f~v~~~~l~~~~l~i~V~ 320 (475)
..|+|+|++|++|+..+ ..+..||||++++...+. ...+++|+++.++. ||.|||+|.|.+...+ ...|.|+||
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~ 79 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVY 79 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEE
Confidence 36899999999999887 578899999999865543 34667899888775 9999999999987444 246999999
Q ss_pred eccCCCCCeeeEEEEEcCcCCC
Q psy15955 321 DFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 321 d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
|++.. ++++||++.+++.+..
T Consensus 80 d~~~~-~~~~iG~~~~~l~~l~ 100 (128)
T cd00275 80 DEDSG-DDDFLGQACLPLDSLR 100 (128)
T ss_pred eCCCC-CCcEeEEEEEEhHHhc
Confidence 99988 8999999999886554
No 206
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.38 E-value=2.2e-12 Score=108.15 Aligned_cols=89 Identities=30% Similarity=0.379 Sum_probs=73.8
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
..|.|+|.+|+ |...+..+.+||||++++. +. .+++|++++++.||.|||+|.|.+.. ...|.|+|||++.
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~--~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~ 72 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQ--PPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHT 72 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--Cc--ccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCC
Confidence 36899999998 5555557889999999873 22 35789999999999999999999863 3479999999999
Q ss_pred CCCCeeeEEEEEcCcCCC
Q psy15955 325 IGRNELIGRILLAGKNGS 342 (475)
Q Consensus 325 ~~~d~~lG~~~i~l~~~~ 342 (475)
.+++++||++.+++.+..
T Consensus 73 ~~~~~~iG~~~i~l~~l~ 90 (125)
T cd04021 73 LKADVLLGEASLDLSDIL 90 (125)
T ss_pred CCCCcEEEEEEEEHHHhH
Confidence 999999999999875543
No 207
>KOG0905|consensus
Probab=99.33 E-value=1.5e-12 Score=136.81 Aligned_cols=126 Identities=38% Similarity=0.619 Sum_probs=113.2
Q ss_pred CCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeec
Q psy15955 97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEG 174 (475)
Q Consensus 97 ~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~ 174 (475)
.+.+..|+|.++++| ..++|.|.|.-+++|+-..-+..+||||+.++.|+.. .+.||+|+++|.||.|||...+.+
T Consensus 1507 ~p~~iggqV~LsIsY--~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g 1584 (1639)
T KOG0905|consen 1507 NPGEIGGQVKLSISY--NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDG 1584 (1639)
T ss_pred CccccCceEEEEEEE--cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecC
Confidence 445667899999999 5999999999999997666567899999999998753 367999999999999999999998
Q ss_pred ccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224 (475)
Q Consensus 175 ~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~ 224 (475)
+|.+.+..+.|+++||..+....+.++|.+.+||.++...+....||.|.
T Consensus 1585 ~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1585 FPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred Cchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 99999988999999999998888999999999999999988888999984
No 208
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.30 E-value=2.1e-11 Score=97.50 Aligned_cols=96 Identities=48% Similarity=0.784 Sum_probs=80.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|.|++|++|......+..+|||++++.+.+....+|+++.++.||.||++|.|. ........|.|+|||.+..+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~---~~~~~~~~l~i~v~~~~~~~~ 78 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE---VPPPELAELEIEVYDKDRFGR 78 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEE---ecCcccCEEEEEEEecCCccC
Confidence 67999999999988766789999999996433246799999999999999999998 333226789999999998777
Q ss_pred CccccceeeccccccCCCC
Q psy15955 198 DDSIGEVFLPLCQVDLSEK 216 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~~ 216 (475)
+.++|.+.+++.++..+..
T Consensus 79 ~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 79 DDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CceeEEEEEEHHHcccCcc
Confidence 8999999999999866544
No 209
>KOG1011|consensus
Probab=99.29 E-value=4.2e-12 Score=125.99 Aligned_cols=116 Identities=28% Similarity=0.509 Sum_probs=94.7
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
...+.++|++|++|..+|..|++||||.+.+ ++.+.+|+++...+||+|||.|.|+ ... ....+++.|||.|.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv---~ktkrrtrti~~~lnpvw~ekfhfe---chn-stdrikvrvwded~ 366 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQV---GKTKRRTRTIHQELNPVWNEKFHFE---CHN-STDRIKVRVWDEDN 366 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEee---cccchhhHhhhhccchhhhhheeee---ecC-CCceeEEEEecCcc
Confidence 4568999999999999999999999999999 5667899999999999999999998 222 35689999999884
Q ss_pred C-----------CCCccccceeeccccccCCCCcceeeccCCCCC--Ccccceeeeee
Q psy15955 195 F-----------SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK--DKCGELLTSLC 239 (475)
Q Consensus 195 ~-----------~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~G~l~l~l~ 239 (475)
. ..|||+|+..|.+..+ ++....||.|..... ..+|-|.+.+.
T Consensus 367 dlksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEE
Confidence 2 4689999999999887 445678999976543 35676665554
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.28 E-value=2.5e-11 Score=96.81 Aligned_cols=101 Identities=47% Similarity=0.757 Sum_probs=84.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
|.|.|++|++|......+.++|||.+.+.+ ...++|+++.++.||.|++.|.|. ++. .....|.|+||+.+..+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~-~~~--~~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFP-VLD--PESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEE-ccC--CCCCEEEEEEEecCCCCC
Confidence 468999999999877778899999999953 356799999999999999999998 332 135689999999998877
Q ss_pred Cccccceeecccccc-CCCCcceeecc
Q psy15955 198 DDSIGEVFLPLCQVD-LSEKPTFWKAL 223 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~-~~~~~~~~~~L 223 (475)
+.+||.+.+++.++. .......|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcCCcCcceecC
Confidence 899999999999998 66666778764
No 211
>KOG1326|consensus
Probab=99.28 E-value=1.3e-12 Score=135.84 Aligned_cols=90 Identities=31% Similarity=0.446 Sum_probs=73.8
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~ 325 (475)
.++|.+.+|.+|.+.|.+|.+||||++.+. +....-+...+.+++||+|.+.|++.+.... ...+++.|||+|..
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~--ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPF--EKDLIVEVYDHDLE 688 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccch--hhcceeEEEEeecc
Confidence 367999999999999999999999999762 2222346778889999999999888754332 34699999999999
Q ss_pred CCCeeeEEEEEcCcC
Q psy15955 326 GRNELIGRILLAGKN 340 (475)
Q Consensus 326 ~~d~~lG~~~i~l~~ 340 (475)
+.|+.||+..+++++
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 999999999998754
No 212
>KOG1328|consensus
Probab=99.27 E-value=3.4e-12 Score=128.24 Aligned_cols=110 Identities=35% Similarity=0.553 Sum_probs=97.6
Q ss_pred ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC----CceEEeeeecCCCCceeeeeEEeecccc
Q psy15955 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK----KHRLETKIKRRTLNPRWNETLYFEGFPI 177 (475)
Q Consensus 102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~~kT~v~~~~~nP~w~e~f~f~~~~~ 177 (475)
-|.+.+++.|......|.|.|+.|+++.+.|.+|.+||||+|.+.|.- ....+|+|+.+|+||+|+|.|+|. ||.
T Consensus 933 fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-Vp~ 1011 (1103)
T KOG1328|consen 933 FGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-VPP 1011 (1103)
T ss_pred CCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-cCc
Confidence 488999999999999999999999999999999999999999997642 124689999999999999999999 666
Q ss_pred cccc--cceEEEEEEeeCCCCCCccccceeecccccc
Q psy15955 178 QKLQ--SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212 (475)
Q Consensus 178 ~~~~--~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~ 212 (475)
+... ..+|.|+|.|+|-...+||-|++.+-|.++.
T Consensus 1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 5443 5789999999999999999999999998884
No 213
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.25 E-value=2.4e-11 Score=99.56 Aligned_cols=73 Identities=25% Similarity=0.341 Sum_probs=60.3
Q ss_pred cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCC
Q psy15955 262 INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG 341 (475)
Q Consensus 262 ~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~ 341 (475)
.+|.+||||++++. ++ ..++|++++++.||.|||.|.|.+... ....|.|.|||++.. ++++||.+.+++.+.
T Consensus 9 ~~G~~dPYv~v~v~--~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYLN--GK--LVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEEC--CE--EEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence 56889999999872 22 346888989999999999999998632 345699999999998 899999999988654
No 214
>KOG0905|consensus
Probab=99.23 E-value=8.6e-12 Score=131.17 Aligned_cols=123 Identities=27% Similarity=0.439 Sum_probs=107.3
Q ss_pred CCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ec
Q psy15955 228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VP 306 (475)
Q Consensus 228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~ 306 (475)
++..|+|.+++.|. ++.|.|.|..+++|+....+...||||+.|+.++.++..++||+++++|.||.|||...+. ++
T Consensus 1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred cccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCc
Confidence 45567999999997 8999999999999987777778999999999999998899999999999999999999998 88
Q ss_pred ccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955 307 WEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD 352 (475)
Q Consensus 307 ~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~ 352 (475)
.+.+.++.|+++||..+....+.+||.+.|+|....-..+...|+.
T Consensus 1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~ 1632 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYN 1632 (1639)
T ss_pred hhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceee
Confidence 8888889999999999999889999999999866554444444443
No 215
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.22 E-value=1.1e-10 Score=93.32 Aligned_cols=93 Identities=44% Similarity=0.658 Sum_probs=77.2
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG 326 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~ 326 (475)
+.|.|++|++|......+..+|||++++...+ ...++|+++.++.||.||++|.|.+.... ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc
Confidence 67899999999888766778999999886443 34578999998899999999999987543 457999999999887
Q ss_pred CCeeeEEEEEcCcCCCC
Q psy15955 327 RNELIGRILLAGKNGSG 343 (475)
Q Consensus 327 ~d~~lG~~~i~l~~~~~ 343 (475)
++.++|.+.+++.+...
T Consensus 78 ~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 78 RDDFIGQVTIPLSDLLL 94 (101)
T ss_pred CCceeEEEEEEHHHccc
Confidence 89999999998765544
No 216
>PLN02270 phospholipase D alpha
Probab=99.19 E-value=1.8e-10 Score=120.53 Aligned_cols=148 Identities=18% Similarity=0.267 Sum_probs=113.3
Q ss_pred CCCEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEeCCCCceEEeeeecCC-CCceeeeeEEeec
Q psy15955 114 DNSTLILRVISAKELPAKD------------------MSGTSDPYVKVALLPDKKHRLETKIKRRT-LNPRWNETLYFEG 174 (475)
Q Consensus 114 ~~~~L~v~v~~a~~L~~~~------------------~~~~~dpyv~v~l~~~~~~~~kT~v~~~~-~nP~w~e~f~f~~ 174 (475)
.+|.|.|+|++|++|+..+ ..+.+||||.|.+ ++....||+++.+. .||+|+|+|...
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~v~rtr~~~~~~~~p~w~e~f~i~- 82 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKARVGRTRKIENEPKNPRWYESFHIY- 82 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcEEEEEeecCCCCCCCccccceEEe-
Confidence 4788999999999998631 1246799999999 46667899999885 699999999855
Q ss_pred ccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcc---cceeeeeeecCCceeEEEEE
Q psy15955 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKC---GELLTSLCYHPSNSVLTITL 251 (475)
Q Consensus 175 ~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~---G~l~l~l~~~~~~~~L~v~v 251 (475)
+.... ..+.|.|.|.|.++. .+||.+.+|+.++..+.....|+++....+++. .+|++++.|.+....-
T Consensus 83 --~ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~---- 154 (808)
T PLN02270 83 --CAHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDR---- 154 (808)
T ss_pred --eccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCc----
Confidence 55543 679999999998875 699999999999999988999999988776543 4899999998743221
Q ss_pred EeeccCcccccCCCccceEEE
Q psy15955 252 LKARNLKAKDINGKSDPYVKV 272 (475)
Q Consensus 252 ~~a~~L~~~~~~~~~dpyv~v 272 (475)
.-.+++...+..|....|...
T Consensus 155 ~~~~gv~~~~~~gvp~t~f~~ 175 (808)
T PLN02270 155 NWGRGIRSAKFPGVPYTFFSQ 175 (808)
T ss_pred chhcccCCcCcCCCCCccccc
Confidence 123444444555666666554
No 217
>KOG2059|consensus
Probab=99.15 E-value=3.1e-11 Score=121.60 Aligned_cols=143 Identities=25% Similarity=0.451 Sum_probs=109.9
Q ss_pred CCCcccEEEEEEEEe--CCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CCceEEeeeecCCCCceeeeeEEeec
Q psy15955 98 PSENVGQIHFSLEYD--FDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD-KKHRLETKIKRRTLNPRWNETLYFEG 174 (475)
Q Consensus 98 ~~~~~G~i~~~~~~~--~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~kT~v~~~~~nP~w~e~f~f~~ 174 (475)
++++.|.|++.++.. .....+...++.++++.+.+. +.+|||++|..... .....+|++++++.+|.|+|.|.|.
T Consensus 111 dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~- 188 (800)
T KOG2059|consen 111 DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE- 188 (800)
T ss_pred ChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeeeccCcchhhheeee-
Confidence 457889999988865 346678888888888877764 45999999998533 2233689999999999999999998
Q ss_pred cccc-------------ccccceEEEEEEe-eCCCCCCccccceeeccccccCCCCcceeeccCCCCC-------Ccccc
Q psy15955 175 FPIQ-------------KLQSRVLHLHVFD-YDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK-------DKCGE 233 (475)
Q Consensus 175 ~~~~-------------~~~~~~L~~~V~d-~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~-------~~~G~ 233 (475)
+... +.....|++++|+ ++....++|+|++.+|+..+.....+..||.|.+... +..|.
T Consensus 189 ~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGs 268 (800)
T KOG2059|consen 189 VTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGS 268 (800)
T ss_pred eccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccc
Confidence 3322 0013468899998 5666669999999999999987777889999987542 35688
Q ss_pred eeeeeeecC
Q psy15955 234 LLTSLCYHP 242 (475)
Q Consensus 234 l~l~l~~~~ 242 (475)
+.+.+.|..
T Consensus 269 lrl~v~y~~ 277 (800)
T KOG2059|consen 269 LRLNVTYTE 277 (800)
T ss_pred eeeeEEeee
Confidence 999988763
No 218
>KOG1328|consensus
Probab=99.09 E-value=5.2e-11 Score=119.89 Aligned_cols=111 Identities=32% Similarity=0.484 Sum_probs=97.2
Q ss_pred cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCce--eeeeeecccccCCCCCeecceEEEeecccc
Q psy15955 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK--RIEKRKTQIFKCNLNPVFNESFSFNVPWEK 309 (475)
Q Consensus 232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~ 309 (475)
|.+.+.+.|......|.|.|+.|+++.+.|.+|.+||||.|.+.+... ....++|.|+++|+||+|+|+|+|.|+++.
T Consensus 934 g~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~ 1013 (1103)
T KOG1328|consen 934 GVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEP 1013 (1103)
T ss_pred CceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccc
Confidence 888899999989999999999999999999999999999999865432 234679999999999999999999999776
Q ss_pred cc--cceEEEEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955 310 IR--ECSLNVMVMDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 310 l~--~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
.. ...|.|+|+|+|-+..++|-|++.+.|.+..
T Consensus 1014 c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1014 CSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 44 4679999999999999999999999775443
No 219
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.09 E-value=1.8e-10 Score=131.56 Aligned_cols=102 Identities=17% Similarity=0.252 Sum_probs=78.4
Q ss_pred ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955 244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD 323 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~ 323 (475)
-|.|.|+|++|.||. +..+.+||||++.+.. ..++||++++++.||+|||.|.|.+..... +..|+|+|||+|
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~----~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~-~~~l~iev~d~d 2051 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN----GPPRQTKVVSHSSSPEWKEGFTWAFDSPPK-GQKLHISCKSKN 2051 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECC----CCcccccccCCCCCCCcccceeeeecCCCC-CCceEEEEEecC
Confidence 578999999999998 5578899999998732 234589999999999999999977653332 346999999999
Q ss_pred CCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 324 NIGRNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
.+++| .||.+.|++.+.........|+.+
T Consensus 2052 ~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L 2080 (2102)
T PLN03200 2052 TFGKS-SLGKVTIQIDRVVMEGTYSGEYSL 2080 (2102)
T ss_pred ccCCC-CCceEEEEHHHHhcCceeeeeeec
Confidence 99655 999999988655443333334433
No 220
>KOG1013|consensus
Probab=99.07 E-value=2.5e-10 Score=105.85 Aligned_cols=109 Identities=35% Similarity=0.538 Sum_probs=97.7
Q ss_pred CCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeeccc
Q psy15955 99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFP 176 (475)
Q Consensus 99 ~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~ 176 (475)
.+.+|+|.++++|......|.|.+++|..|..+|.+|-+||||+.++.++.+. +.||.+.+++++|+|+++|.|. ++
T Consensus 216 ~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~-i~ 294 (362)
T KOG1013|consen 216 DEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD-IG 294 (362)
T ss_pred hhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc-CC
Confidence 36789999999999999999999999999999999999999999999766433 4689999999999999999999 88
Q ss_pred ccccccceEEEEEEeeCCCCCCccccceeecc
Q psy15955 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208 (475)
Q Consensus 177 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l 208 (475)
..++....+.|.|||++..+..+++|....-+
T Consensus 295 pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 295 PGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred ccchhcceEEEeecccCCCcCccCCCcccccc
Confidence 88888889999999999887889999866554
No 221
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.07 E-value=9.5e-10 Score=87.49 Aligned_cols=90 Identities=43% Similarity=0.603 Sum_probs=74.8
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG 326 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~ 326 (475)
|.|.|++|++|.........+|||.+.+.. ...++|.+..++.||.|++.|.|.+... ....|.|+||+.+..+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~ 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFS 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCC
Confidence 468999999998877777899999998743 2456899999999999999999998752 2457999999999888
Q ss_pred CCeeeEEEEEcCcCCC
Q psy15955 327 RNELIGRILLAGKNGS 342 (475)
Q Consensus 327 ~d~~lG~~~i~l~~~~ 342 (475)
++.+||.+.+++.+..
T Consensus 75 ~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 75 KDDFLGEVEIPLSELL 90 (102)
T ss_pred CCceeEEEEEeHHHhh
Confidence 8899999999875544
No 222
>KOG1011|consensus
Probab=99.06 E-value=2.1e-10 Score=114.19 Aligned_cols=101 Identities=36% Similarity=0.546 Sum_probs=84.2
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
..+.++|+.|++|.++|..|++||||.+.+ ...+++|+++...+||+|||.|.|.+.... ..|++.|||.|.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv-----~ktkrrtrti~~~lnpvw~ekfhfechnst---drikvrvwded~ 366 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQV-----GKTKRRTRTIHQELNPVWNEKFHFECHNST---DRIKVRVWDEDN 366 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEee-----cccchhhHhhhhccchhhhhheeeeecCCC---ceeEEEEecCcc
Confidence 468899999999999999999999999865 235678999999999999999999987543 369999999885
Q ss_pred C-----------CCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955 325 I-----------GRNELIGRILLAGKNGSGASETKHWQDMIT 355 (475)
Q Consensus 325 ~-----------~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~ 355 (475)
. ..|+|+|+..|.+..+++ +++.|+.+..
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsg--emdvwynlek 406 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEK 406 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhh
Confidence 2 368999999998766654 6778887754
No 223
>PLN02223 phosphoinositide phospholipase C
Probab=99.01 E-value=1.5e-09 Score=109.28 Aligned_cols=97 Identities=15% Similarity=0.250 Sum_probs=76.3
Q ss_pred eeEEEEEEeeccCccc-----ccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEE
Q psy15955 245 SVLTITLLKARNLKAK-----DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV 319 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~-----~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V 319 (475)
..|.|+|+.|++++.. +.....||||+|.+..-......++|.+..++.||+|||+|.|.|...++ +.|.|.|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V 486 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEV 486 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEE
Confidence 5699999999987521 22345799999999643222345677787889999999999999987776 4799999
Q ss_pred EeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 320 MDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 320 ~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
+|+|..++++|+|+..+|+..+-.
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~ 510 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIE 510 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcC
Confidence 999998889999999999865443
No 224
>PLN02270 phospholipase D alpha
Probab=98.96 E-value=2.1e-09 Score=112.61 Aligned_cols=128 Identities=19% Similarity=0.290 Sum_probs=99.3
Q ss_pred eeEEEEEEeeccCcccc------------------cCCCccceEEEEEEeCceeeeeeecccccCC-CCCeecceEEEee
Q psy15955 245 SVLTITLLKARNLKAKD------------------INGKSDPYVKVWLQFGEKRIEKRKTQIFKCN-LNPVFNESFSFNV 305 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~------------------~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t-~nP~w~e~f~f~v 305 (475)
|.|.|+|++|++|+..+ ..+++||||.|.+. ...+-||+++.+. .||.|+|+|.+.+
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~a~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE----KARVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC----CcEEEEEeecCCCCCCCccccceEEee
Confidence 68999999999998631 12468999999873 2345699999875 6999999998888
Q ss_pred cccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCCcccceeecc
Q psy15955 306 PWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSV 380 (475)
Q Consensus 306 ~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~ 380 (475)
.... ..|.|+|.|.+.+|. .+||.+.||..+..+++..+.|.++++..++....-..|.-+-.|..+.+..
T Consensus 84 ah~~---~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 84 AHMA---SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred ccCc---ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCc
Confidence 6443 469999999998875 6999999999999999999999999988776665544555444555544443
No 225
>KOG1327|consensus
Probab=98.95 E-value=2e-09 Score=107.38 Aligned_cols=191 Identities=20% Similarity=0.312 Sum_probs=126.9
Q ss_pred ccccccccchhhHHHHHhhhhhhhcccCcc-ccCCCCCCCCCCCCCCCCCcccCCCCCCcccccccccCCCCCCCCcccc
Q psy15955 3 DGFKNHAISKLTLSRFLSQSVAQLETAGTT-VDSNNSKSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAFM 81 (475)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~~~~~~l 81 (475)
+..+++.|...+||.|++++.+..+=--.- +....++-+.. .. -....||+
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~--------------~~--------------~l~~~dfl 92 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSR--------------TP--------------DLSSADFL 92 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCc--------------cC--------------Ccchhccc
Confidence 457899999999999999999987722211 11111111000 00 01122333
Q ss_pred cccccceeeeEeC---------CCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCCc
Q psy15955 82 QSRSVSLVDMYID---------NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP-DKKH 151 (475)
Q Consensus 82 ~~~~~s~~~~~~~---------~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~ 151 (475)
+...+.+.++... ........|.|.+.++............++|++|..+|.++++|||..++-.. ++..
T Consensus 93 g~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~ 172 (529)
T KOG1327|consen 93 GTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGST 172 (529)
T ss_pred ceeeeehhhhhhhhhhhhhhhcccCccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCce
Confidence 3333333222111 01133456899999998877777777778999999999999999999998643 2222
Q ss_pred --eEEeeeecCCCCceeeeeEEeecccccccc----cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955 152 --RLETKIKRRTLNPRWNETLYFEGFPIQKLQ----SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP 225 (475)
Q Consensus 152 --~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~----~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 225 (475)
.++|++++++++|.|.+. . ++...++ ...+.+.+||++..+++++||++..++.++........|....+
T Consensus 173 ~~~~~tEv~~n~l~p~w~~~---~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~~~~~~~~~~~~~ 248 (529)
T KOG1327|consen 173 QMLYRTEVVKNTLNPQWAPF---S-ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQEPGSPNQIMLINP 248 (529)
T ss_pred eeccccceeccCCCCccccc---c-cchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcccCCcccccccCh
Confidence 469999999999999853 2 4455543 36788999999999999999999999999975333334444433
No 226
>KOG1031|consensus
Probab=98.93 E-value=1.5e-09 Score=106.91 Aligned_cols=121 Identities=25% Similarity=0.441 Sum_probs=102.0
Q ss_pred CCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeee-EEeecccccccccceEEEEEEee
Q psy15955 115 NSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNET-LYFEGFPIQKLQSRVLHLHVFDY 192 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~-f~f~~~~~~~~~~~~L~~~V~d~ 192 (475)
.+.|.|+|..||+||-+|.. ...|.||+|.+ ....+||.|..+++||.||.. |.|+ +.-.+++...|+|.+.|+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~---~n~t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~ 77 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKF---ANTTFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDH 77 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEe---cccceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEecc
Confidence 35789999999999998865 46799999999 556789999999999999954 8888 777888899999999999
Q ss_pred CCCCCCccccceeeccccccCCC----------CcceeeccCCCCCCcccceeeeee
Q psy15955 193 DRFSRDDSIGEVFLPLCQVDLSE----------KPTFWKALKPPAKDKCGELLTSLC 239 (475)
Q Consensus 193 d~~~~~~~iG~~~i~l~~l~~~~----------~~~~~~~L~~~~~~~~G~l~l~l~ 239 (475)
|..+.+|-||.+.|.+.-|.... -...|+++...-...+|+|.+-+.
T Consensus 78 dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 78 DTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred cccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 99999999999999988874322 125799998877788899887664
No 227
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.89 E-value=7.1e-09 Score=106.59 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=77.2
Q ss_pred ceeEEEEEEeeccCccc------ccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEE
Q psy15955 244 NSVLTITLLKARNLKAK------DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNV 317 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~------~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i 317 (475)
...|.|+|+.+.+++.. +.....||||+|.+..-.....+++|++..++.||.|||+|.|.+..++| +.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf 545 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRV 545 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEE
Confidence 35799999999987421 22335799999999643333345688888899999999999999887776 57999
Q ss_pred EEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955 318 MVMDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 318 ~V~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
.|+|+|..++++|+|+..||+..+-
T Consensus 546 ~V~d~d~~~~ddfiGQ~~lPv~~Lr 570 (598)
T PLN02230 546 EVHEHDINEKDDFGGQTCLPVSEIR 570 (598)
T ss_pred EEEECCCCCCCCEEEEEEcchHHhh
Confidence 9999999889999999999986544
No 228
>PLN02952 phosphoinositide phospholipase C
Probab=98.87 E-value=1.1e-08 Score=105.39 Aligned_cols=98 Identities=21% Similarity=0.317 Sum_probs=77.2
Q ss_pred ceeEEEEEEeeccCccc------ccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEE
Q psy15955 244 NSVLTITLLKARNLKAK------DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNV 317 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~------~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i 317 (475)
...|.|.|+.|++++.. +.....||||+|.+..-.....+++|+++.++.||.||++|.|.+...++ +.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf 546 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRI 546 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEE
Confidence 35799999999987532 11233599999998643333356689999999999999999999887665 47999
Q ss_pred EEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 318 MVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 318 ~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
.|||+|..++++++|++.+|+..+..
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~ 572 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVSELRP 572 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchhHhcC
Confidence 99999998899999999999865543
No 229
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.83 E-value=1.7e-08 Score=103.75 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=76.0
Q ss_pred ceeEEEEEEeeccCcc--c----ccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEE
Q psy15955 244 NSVLTITLLKARNLKA--K----DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNV 317 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~--~----~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i 317 (475)
...|.|+|+.+.+++. . +.....||||+|.+........+++|+++.++.||.|||+|.|.+...+| +.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf 528 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRL 528 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEE
Confidence 3579999999987531 1 12345799999998633222345689999998999999999999877776 57999
Q ss_pred EEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955 318 MVMDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 318 ~V~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
.|+|+|..+.++|+|+..+|+..+-
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr 553 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELS 553 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhh
Confidence 9999998888999999999986544
No 230
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.82 E-value=1.5e-08 Score=79.36 Aligned_cols=84 Identities=24% Similarity=0.446 Sum_probs=68.0
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 118 LILRVISAKELPAKD---MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 118 L~v~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
|.|+|.+|+++...+ ..+.+||||.|.+ ++..+.||++ +.||.|||+|.|. ++. ...+.+.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv--ed~~kaRTr~---srnd~WnE~F~i~---Vdk--~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKV--EDVERARTKP---SRNDRWNEDFEIP---VEK--NNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEE--CCEEEEeccC---CCCCcccceEEEE---ecC--CcEEEEEEEeCCC
Confidence 578999999999887 5678999999999 4555778887 4799999999988 443 5689999999864
Q ss_pred CCCCccccceeecccccc
Q psy15955 195 FSRDDSIGEVFLPLCQVD 212 (475)
Q Consensus 195 ~~~~~~iG~~~i~l~~l~ 212 (475)
...-.||..-+.+++|.
T Consensus 71 -~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred -CeecceeeehhhHHHHH
Confidence 34567898888888874
No 231
>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=98.81 E-value=8.7e-10 Score=88.85 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=51.7
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCC---CcccccccccCCCCCCCCcccc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSS---TPLHNKAVANVKAGEHPSSAFM 81 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~n~~~g~~~~~~~l 81 (475)
.-.++++.+.|+||+|+|+||+|++|...|...+...+..=.+.. ....++|..||+||||+||++|
T Consensus 46 ~~~~n~~~l~RvYP~g~R~dSSNy~P~~~W~~G~QmVAlN~Qt~d~~m~lN~g~F~~NG~cGYVLKP~~l 115 (115)
T smart00149 46 FVRYNQRQLSRVYPKGTRVDSSNYNPQVFWNAGCQMVALNFQTPDKPMQLNQGMFRANGGCGYVLKPDFL 115 (115)
T ss_pred HHHhccccceEECcCCCcCCCCCCCCHHHHcCCceEeEeecCCCChHHHHHhhHhhcCCCCCeEeCCCCC
Confidence 346788999999999999999999998776555544444433322 2344889999999999999986
No 232
>KOG0169|consensus
Probab=98.77 E-value=2e-08 Score=103.33 Aligned_cols=95 Identities=23% Similarity=0.380 Sum_probs=76.8
Q ss_pred eEEEEEEeeccCcccc----cCCCccceEEEEEEeCceeeeeeecc-cccCCCCCeecceEEEeecccccccceEEEEEE
Q psy15955 246 VLTITLLKARNLKAKD----INGKSDPYVKVWLQFGEKRIEKRKTQ-IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM 320 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~----~~~~~dpyv~v~l~~~~~~~~~~~T~-~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~ 320 (475)
.|.|.|+.+.++...- ....+||||.|.+..-......++|+ +..++.||.|+|+|+|.+..++| +-|.|.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEE
Confidence 6999999999775432 22457999999875433334567888 55678999999999999988887 47999999
Q ss_pred eccCCCCCeeeEEEEEcCcCCC
Q psy15955 321 DFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 321 d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
|+|..++|+|+|++++|+..+.
T Consensus 695 d~d~~~~ddF~GQ~tlP~~~L~ 716 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVSELR 716 (746)
T ss_pred ecCCCCcccccceeeccHHHhh
Confidence 9999999999999999986544
No 233
>KOG1031|consensus
Probab=98.77 E-value=1.1e-08 Score=100.87 Aligned_cols=115 Identities=22% Similarity=0.339 Sum_probs=92.6
Q ss_pred eeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeec-ceEEEeecccccccceEEEEEEec
Q psy15955 245 SVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFN-ESFSFNVPWEKIRECSLNVMVMDF 322 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~-e~f~f~v~~~~l~~~~l~i~V~d~ 322 (475)
+.|.|.|..||+|+-+|.. ...|.||++.+ ....++|.+..+++||.|| +-|.|.|...+|++.+|+|++.|+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~-----~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~ 77 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF-----ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDH 77 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEe-----cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecc
Confidence 5788999999999999854 46799999987 3356799999999999999 579999999999999999999999
Q ss_pred cCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955 323 DNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK 368 (475)
Q Consensus 323 ~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~ 368 (475)
|..+.++-||.+.|++..++-.+ -.+.....++.++.|++++
T Consensus 78 dtysandaigkv~i~idpl~~e~----aaqavhgkgtvisgw~pif 119 (1169)
T KOG1031|consen 78 DTYSANDAIGKVNIDIDPLCLEE----AAQAVHGKGTVISGWFPIF 119 (1169)
T ss_pred cccccccccceeeeccChHHHHh----HHhhhcCCceEEeeeeecc
Confidence 99999999999999876543211 1112223467778888876
No 234
>KOG2060|consensus
Probab=98.74 E-value=1.2e-08 Score=96.51 Aligned_cols=122 Identities=30% Similarity=0.429 Sum_probs=100.2
Q ss_pred CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeeccc
Q psy15955 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDM-SGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFP 176 (475)
Q Consensus 100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~ 176 (475)
...|.|++.+- ...+.+.|.|++|++|..+.. ...++|||+|++++.+.+ +.+|+...+|++|-|-+...|.
T Consensus 255 P~mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~--- 329 (405)
T KOG2060|consen 255 PNMGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD--- 329 (405)
T ss_pred cccccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc---
Confidence 34566665554 378899999999999997653 347899999999877654 4589999999999999988886
Q ss_pred ccccccceEEEEEE-eeCCCCCCccccceeeccccccCCC-CcceeeccCCCC
Q psy15955 177 IQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQVDLSE-KPTFWKALKPPA 227 (475)
Q Consensus 177 ~~~~~~~~L~~~V~-d~d~~~~~~~iG~~~i~l~~l~~~~-~~~~~~~L~~~~ 227 (475)
+.+....|.+.|| |+.++..+.|+|.+.+-+.+|..+. ....||+|.+..
T Consensus 330 -~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 330 -QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred -cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 3445678999999 7888888999999999999998887 668999998754
No 235
>PLN02228 Phosphoinositide phospholipase C
Probab=98.74 E-value=5e-08 Score=99.98 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=76.5
Q ss_pred ceeEEEEEEeeccCcc---c---ccCCCccceEEEEEEeCceeeeeeecccccCCCCCee-cceEEEeecccccccceEE
Q psy15955 244 NSVLTITLLKARNLKA---K---DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVF-NESFSFNVPWEKIRECSLN 316 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~---~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w-~e~f~f~v~~~~l~~~~l~ 316 (475)
...|.|+|+.|++|+. . +.....||||+|.+........+++|++++++.||.| +++|.|.+...+| +.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lR 507 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLW 507 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEE
Confidence 3479999999998732 1 1223479999999864333335578999988899999 9999999887776 4799
Q ss_pred EEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955 317 VMVMDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 317 i~V~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
|.|+|+|..+.++++|+..||+..+-
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~Lr 533 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPELK 533 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHhh
Confidence 99999998888999999999986543
No 236
>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), an eukaryotic intracellular enzyme, plays an important role in signal transduction processes [] (see IPR001192 from INTERPRO). It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as 'X-box' (see IPR000909 from INTERPRO) and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. At the C-terminal of the Y-box, there is a C2 domain (see IPR000008 from INTERPRO) possibly involved in Ca-dependent membrane attachment.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0006629 lipid metabolic process, 0007165 signal transduction, 0035556 intracellular signal transduction; PDB: 3OHM_B 2FJU_B 2ZKM_X 3QR1_D 3QR0_A 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.67 E-value=1.2e-09 Score=88.83 Aligned_cols=70 Identities=13% Similarity=0.057 Sum_probs=41.2
Q ss_pred hhHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCCC---cccccccccCCCCCCCCccccc
Q psy15955 13 LTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSST---PLHNKAVANVKAGEHPSSAFMQ 82 (475)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~n~~~g~~~~~~~l~ 82 (475)
...-.++++.+.|+||+|+++||+|++|-..+...+...+..=.+... ...++|..||+||||+||++|+
T Consensus 46 ~~l~~~~~~~l~RvyP~~~R~~SsN~~P~~~W~~G~Q~vALN~Qt~d~~m~ln~g~F~~NG~cGYVLKP~~lR 118 (118)
T PF00387_consen 46 SELVEHNKRHLVRVYPSGTRIDSSNFNPLPFWNCGCQMVALNFQTPDEPMQLNQGMFRQNGGCGYVLKPEYLR 118 (118)
T ss_dssp HHHHHHHHHSEEEEE--TT-TT-----THHHHTTT-SEEEB-TTS-SHHHHHHHHHTTTGGG-SEEE--GGGT
T ss_pred chHHHhcccceEEecCCccccCCCCCChHHHhhccCccceeeccCCChhHHHHHhhhccCCCCCeEeCchhhC
Confidence 334567899999999999999999999977755555554444333322 2347899999999999999985
No 237
>PLN02352 phospholipase D epsilon
Probab=98.67 E-value=1.7e-07 Score=98.43 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=98.3
Q ss_pred CCCEEEEEEEEeecCCCC----CCC-CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEE
Q psy15955 114 DNSTLILRVISAKELPAK----DMS-GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLH 188 (475)
Q Consensus 114 ~~~~L~v~v~~a~~L~~~----~~~-~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~ 188 (475)
-+|+|.++|++|+-+... +.. ...||||.|.+ ++....|| .+..||+|+|+|... +.......+.|.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~v~rt---~~~~~p~w~e~f~i~---~ah~~~~~~~f~ 79 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKKVAKT---SHEYDRVWNQTFQIL---CAHPLDSTITIT 79 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcEEecC---CCCCCCccccceeEE---eeeecCCcEEEE
Confidence 467899999999843322 111 12399999999 45566788 666799999999855 655544579999
Q ss_pred EEeeCCCCCCccccceeeccccccCCCC-cceeeccCCCCCCcc--cceeeeeeecCCceeEEEEEEeeccCcccccCCC
Q psy15955 189 VFDYDRFSRDDSIGEVFLPLCQVDLSEK-PTFWKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGK 265 (475)
Q Consensus 189 V~d~d~~~~~~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~--G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~ 265 (475)
|.| ...+||.+.+|+.++..+.. .+.|+++....+++. .+|++++.|.|....-. -.+++...+..|.
T Consensus 80 vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~gv 150 (758)
T PLN02352 80 LKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEPT----WCKILENGSFQGL 150 (758)
T ss_pred Eec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCcc----hhhcccCCCcCCc
Confidence 988 25799999999999988866 789999988776543 58999999987533211 2233333344454
Q ss_pred ccceEE
Q psy15955 266 SDPYVK 271 (475)
Q Consensus 266 ~dpyv~ 271 (475)
...|..
T Consensus 151 p~~~f~ 156 (758)
T PLN02352 151 RNATFP 156 (758)
T ss_pred CCcccc
Confidence 444444
No 238
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.65 E-value=3.4e-08 Score=73.77 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=78.3
Q ss_pred EEEEEeeccCcccccCC-CccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955 248 TITLLKARNLKAKDING-KSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG 326 (475)
Q Consensus 248 ~v~v~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~ 326 (475)
-++++.|+||......| ....|++--+.-. +....||++.+.+.||+|.|+|.|.+...+|.+..|.|.|+. ...
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCC
Confidence 46889999997655433 3455777554322 223568999999999999999999999999999999999998 556
Q ss_pred CCeeeEEEEEcCcCCCCCccccccccc
Q psy15955 327 RNELIGRILLAGKNGSGASETKHWQDM 353 (475)
Q Consensus 327 ~d~~lG~~~i~l~~~~~~~~~~~w~~~ 353 (475)
+...||.|.+.+.+. +.++..||.++
T Consensus 78 RKe~iG~~sL~l~s~-geeE~~HW~e~ 103 (103)
T cd08684 78 RKRTIGECSLSLRTL-STQETDHWLEI 103 (103)
T ss_pred ccceeeEEEeecccC-CHHHhhhhhcC
Confidence 789999999987554 45788899764
No 239
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.57 E-value=5.1e-08 Score=72.84 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=77.8
Q ss_pred EEEEEEeecCCCCCCCC-CCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955 119 ILRVISAKELPAKDMSG-TSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR 197 (475)
Q Consensus 119 ~v~v~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 197 (475)
-++|+.|++|......| .+.-|++--+.-.+...+||.+.+...||+|.|+|.|. +....+....|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCc
Confidence 47889999999766544 45567665543244456799999999999999999999 78888888899999998 4567
Q ss_pred CccccceeeccccccCCCCcceeec
Q psy15955 198 DDSIGEVFLPLCQVDLSEKPTFWKA 222 (475)
Q Consensus 198 ~~~iG~~~i~l~~l~~~~~~~~~~~ 222 (475)
.+.||.+.+.+.++-.. ...+|.+
T Consensus 79 Ke~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHH-Hhhhhhc
Confidence 88999999999888432 3356754
No 240
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.50 E-value=1.6e-07 Score=75.78 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=69.1
Q ss_pred EEEEEEeeccCccccc-------------CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc------
Q psy15955 247 LTITLLKARNLKAKDI-------------NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW------ 307 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~-------------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~------ 307 (475)
|.|.|++|.+|+.... .-..++||++.+..-.+ .+.++|+++.++..|.|+.+++|.++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~-~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPE-KELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCC-CceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4688899999875431 11258999998754222 245789999999999999999999861
Q ss_pred -------cccccceEEEEEEeccCC----------CCCeeeEEEEEcCcCC
Q psy15955 308 -------EKIRECSLNVMVMDFDNI----------GRNELIGRILLAGKNG 341 (475)
Q Consensus 308 -------~~l~~~~l~i~V~d~~~~----------~~d~~lG~~~i~l~~~ 341 (475)
+-|....+.++||+.... .+|-+||.+.||+.++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~L 130 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDL 130 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHH
Confidence 234457899999997642 3567899999998553
No 241
>KOG1264|consensus
Probab=98.49 E-value=4.5e-07 Score=93.15 Aligned_cols=94 Identities=22% Similarity=0.303 Sum_probs=74.9
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeec-ceEEEeecccccccceEEEEEEec
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFN-ESFSFNVPWEKIRECSLNVMVMDF 322 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~-e~f~f~v~~~~l~~~~l~i~V~d~ 322 (475)
-.|.|.|+.||.|+... .+-+.|||.|.+-...-... .++|.++.+.+||+|| ++|+|.|..+++ +-|.|.|+|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~--A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF--AFLRFVVYEE 1141 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce--EEEEEEEecc
Confidence 36899999999998543 45567999999854332223 3456666789999999 999999987765 5799999999
Q ss_pred cCCCCCeeeEEEEEcCcCC
Q psy15955 323 DNIGRNELIGRILLAGKNG 341 (475)
Q Consensus 323 ~~~~~d~~lG~~~i~l~~~ 341 (475)
|+++...|||+++.|+...
T Consensus 1142 Dmfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred cccCCcceeeeeecchhhh
Confidence 9999889999999988543
No 242
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.48 E-value=6.7e-07 Score=70.17 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=61.0
Q ss_pred EEEEEEeeccCcccc---cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955 247 LTITLLKARNLKAKD---INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD 323 (475)
Q Consensus 247 L~v~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~ 323 (475)
|.|+|..++|+...+ ..+.+||||.+.+. + ..+.||++ +.||.|||+|.|+|.. ...+.|.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d--~~kaRTr~---srnd~WnE~F~i~Vdk----~nEiel~VyDk~ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--D--VERARTKP---SRNDRWNEDFEIPVEK----NNEEEVIVYDKG 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC--C--EEEEeccC---CCCCcccceEEEEecC----CcEEEEEEEeCC
Confidence 578999999998877 67889999999763 2 23567876 5899999999999842 457999999975
Q ss_pred CCCCCeeeEEEEEcCc
Q psy15955 324 NIGRNELIGRILLAGK 339 (475)
Q Consensus 324 ~~~~d~~lG~~~i~l~ 339 (475)
. ...-.||..-+.+.
T Consensus 70 ~-~~~~Pi~llW~~~s 84 (109)
T cd08689 70 G-DQPVPVGLLWLRLS 84 (109)
T ss_pred C-CeecceeeehhhHH
Confidence 3 23345677666443
No 243
>KOG2060|consensus
Probab=98.39 E-value=7.6e-07 Score=84.43 Aligned_cols=113 Identities=23% Similarity=0.357 Sum_probs=88.5
Q ss_pred CceeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEE-
Q psy15955 243 SNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM- 320 (475)
Q Consensus 243 ~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~- 320 (475)
..+.+.|.|++|++|..+... ..++|||+||++..+..+.+.+|+...+|.+|.+.....|.-++. ...|.++||
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~---~k~Lq~tv~g 343 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP---GKYLQGTVWG 343 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC---ccEEEEEEec
Confidence 467899999999999776532 368999999999988888889999999999999998888875543 457999999
Q ss_pred eccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCC
Q psy15955 321 DFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDH 371 (475)
Q Consensus 321 d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~ 371 (475)
|+.++..+.|+|.+++-+.++. ......+.||+|+...
T Consensus 344 dygRmd~k~fmg~aqi~l~eL~-------------ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQIMLDELN-------------LSSSPVIGWYKLFGSS 381 (405)
T ss_pred cccccchHHHhhHHHHHhhhhc-------------cccccceeeeeccCCc
Confidence 5667777889999988553322 2233567899988654
No 244
>PLN02352 phospholipase D epsilon
Probab=98.19 E-value=4.3e-06 Score=88.06 Aligned_cols=124 Identities=11% Similarity=0.151 Sum_probs=86.5
Q ss_pred eeEEEEEEeeccCccc----c-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEE
Q psy15955 245 SVLTITLLKARNLKAK----D-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV 319 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~----~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V 319 (475)
|.|.++|++|+-+... . .....||||.|.+. + ..+-|| .+..||.|+|+|.+.+.... +..+.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~--~~v~rt---~~~~~p~w~e~f~i~~ah~~--~~~~~f~v 80 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--N--KKVAKT---SHEYDRVWNQTFQILCAHPL--DSTITITL 80 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeC--C--cEEecC---CCCCCCccccceeEEeeeec--CCcEEEEE
Confidence 6788888888743221 1 11123999999773 2 234466 45669999999888876432 34699999
Q ss_pred EeccCCCCCeeeEEEEEcCcCCCCCcc-cccccccccCCCcceeeeeccCCCCcccceeecccce
Q psy15955 320 MDFDNIGRNELIGRILLAGKNGSGASE-TKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVS 383 (475)
Q Consensus 320 ~d~~~~~~d~~lG~~~i~l~~~~~~~~-~~~w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~ 383 (475)
.| ...+||.+.||..+..++++ .+.|.++++..++.... ..|.-+-.|....+...+.
T Consensus 81 k~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~ 139 (758)
T PLN02352 81 KT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPTWC 139 (758)
T ss_pred ec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcchh
Confidence 98 26899999999999888766 99999999887777655 5565555566655554333
No 245
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.11 E-value=3.5e-06 Score=68.20 Aligned_cols=105 Identities=24% Similarity=0.313 Sum_probs=75.5
Q ss_pred EEEEEEEeecCCCCC---------CC----CCCCcEEEEEEeC-CCCceEEeeeecCCCCceeeeeEEeecccc------
Q psy15955 118 LILRVISAKELPAKD---------MS----GTSDPYVKVALLP-DKKHRLETKIKRRTLNPRWNETLYFEGFPI------ 177 (475)
Q Consensus 118 L~v~v~~a~~L~~~~---------~~----~~~dpyv~v~l~~-~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~------ 177 (475)
|.|.|++|.+|.... +. =--++||++.+.- .++...+|+++-+++.|.|+.+++|. .++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEe-cccEEEcCC
Confidence 457888999988431 10 0247999999632 23456789999999999999999987 331
Q ss_pred -------cccccceEEEEEEeeCCC----------CCCccccceeeccccccCC-CCcceeecc
Q psy15955 178 -------QKLQSRVLHLHVFDYDRF----------SRDDSIGEVFLPLCQVDLS-EKPTFWKAL 223 (475)
Q Consensus 178 -------~~~~~~~L~~~V~d~d~~----------~~~~~iG~~~i~l~~l~~~-~~~~~~~~L 223 (475)
+.++...+.|+||+.+.. .+|-+||.+.||+.+|... .+.+.||++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 123457799999987632 2456899999999998644 456789975
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.74 E-value=2.6e-05 Score=81.60 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=72.1
Q ss_pred CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD 193 (475)
Q Consensus 114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d 193 (475)
=.+...+++++|+ ++ ..|+|..+-.. +.+.+||.+.++|+||+||+...|. +.... ....+|.|||++
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~--g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~--~~~~~~~~~~~~ 119 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSF--GEQTFRTETSDSTDKPVWNSEKKLL-LEKNG--PHLARISVFETN 119 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEe--cceeeeeccccccCCcccchhhceE-eccCC--cceEEEEEEecC
Confidence 4667888999887 33 25888655442 7788999999999999999998887 33333 335699999999
Q ss_pred CCCCCccccceeeccccccCCCCc
Q psy15955 194 RFSRDDSIGEVFLPLCQVDLSEKP 217 (475)
Q Consensus 194 ~~~~~~~iG~~~i~l~~l~~~~~~ 217 (475)
+++.++++|.+.++|.++...+..
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~ 143 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPE 143 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHH
Confidence 999999999999999888655443
No 247
>PHA02517 putative transposase OrfB; Reviewed
Probab=97.65 E-value=3.7e-05 Score=73.85 Aligned_cols=84 Identities=19% Similarity=0.137 Sum_probs=71.3
Q ss_pred eeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhcc----ccchHHHHHHHHHHhcCc-cCCC
Q psy15955 361 IVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN----WNNVDEELLNFSQSYNST-PHTT 435 (475)
Q Consensus 361 ~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~----~~~~~~~l~~~l~~y~~~-~~~~ 435 (475)
.++.+..+.+..|..+|...|+.+..+.+++|+.||.+|++++++|..+.... ..+....+..++..||+. ||.+
T Consensus 174 ~sD~G~~y~s~~~~~~~~~~gi~~~~~~~~~P~~N~~iEr~~~tlK~e~~~~~~~~s~~~l~~~~~~~i~~YN~~R~h~~ 253 (277)
T PHA02517 174 HSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHER 253 (277)
T ss_pred ecccccccchHHHHHHHHHcCcccccCCCCCCCCccccchhHhhhhhhhhcCccCCCHHHHHHHHHHHHHHhCcCCcccc
Confidence 37888888889999999999999999999999999999999999998665432 255667778888889865 8998
Q ss_pred C-CCChhhhh
Q psy15955 436 L-GVSPAELH 444 (475)
Q Consensus 436 ~-~~sP~~l~ 444 (475)
+ +.||.|..
T Consensus 254 l~~~tP~~~~ 263 (277)
T PHA02517 254 LGYTPPAEAE 263 (277)
T ss_pred cCCcCHHHHH
Confidence 8 79999864
No 248
>PF13683 rve_3: Integrase core domain
Probab=97.64 E-value=5.7e-06 Score=60.83 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=50.0
Q ss_pred ccceecccCCCCCCCCCchhhhhHHHHHHhhhcc----ccchHHHHHHHHHHhcCc-cCCCCC-CCh
Q psy15955 380 VGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN----WNNVDEELLNFSQSYNST-PHTTLG-VSP 440 (475)
Q Consensus 380 ~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~----~~~~~~~l~~~l~~y~~~-~~~~~~-~sP 440 (475)
.||.+..+.+..|+.||.+||+++++|..+.... ..+....|..++..||.. ||.++| .||
T Consensus 1 ~gI~~~~~~~~~p~~N~~~Er~~~tlK~e~~~~~~~~s~~~~~~~v~~~~~~YN~~RpH~~l~~~tP 67 (67)
T PF13683_consen 1 HGIKHSMSRPGSPQDNGKVERFNRTLKREFLYRHPFTSLEELRKQVDEWIDFYNHERPHSALGYKTP 67 (67)
T ss_pred CCeEEEeCCCCCcccccceeeehhhhccchhcccceecccccccccceEEEeEcCcCCChHHcCcCc
Confidence 4789999999999999999999999988655432 266777788888899977 899884 655
No 249
>KOG3837|consensus
Probab=97.45 E-value=4.9e-05 Score=73.07 Aligned_cols=134 Identities=16% Similarity=0.245 Sum_probs=101.0
Q ss_pred EEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEe--CCCCceEEeeeecCCCCceeeeeEEeecccc-----c-
Q psy15955 107 FSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALL--PDKKHRLETKIKRRTLNPRWNETLYFEGFPI-----Q- 178 (475)
Q Consensus 107 ~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~-----~- 178 (475)
+.+--+.....|.+.|+++.+++.......-|-||++.+. ++..++.+|.+++++.+|.|+|.|... +.. .
T Consensus 358 v~~f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~ 436 (523)
T KOG3837|consen 358 VAFFEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNRE 436 (523)
T ss_pred hhhccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHH
Confidence 3333444667789999999999876544556889998862 334556789999999999999999876 222 0
Q ss_pred ---ccccceEEEEEEeeCCC-CCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeec
Q psy15955 179 ---KLQSRVLHLHVFDYDRF-SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYH 241 (475)
Q Consensus 179 ---~~~~~~L~~~V~d~d~~-~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~ 241 (475)
......+.|+||+...+ ..|.++|.+.+.|.-|.........++|........|.|.+.+...
T Consensus 437 fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 437 FQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred HHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 01134699999998765 4688999999999999888788889999887667778887777654
No 250
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=97.28 E-value=0.00026 Score=67.09 Aligned_cols=87 Identities=24% Similarity=0.273 Sum_probs=69.9
Q ss_pred cceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHH-hhhccc---cchHHHHHHHHHHhcCc-cC
Q psy15955 359 QTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRF-LRKCNW---NNVDEELLNFSQSYNST-PH 433 (475)
Q Consensus 359 ~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~-l~~~~~---~~~~~~l~~~l~~y~~~-~~ 433 (475)
...++.+..+.+..|..++...|+.+..+.+.+|+.||.+|++++++|.- +..... .+....+..+...||+. ||
T Consensus 155 iihSD~Gsqy~s~~~~~~l~~~gI~~Smsr~g~p~dNa~~Erf~~tlK~E~l~~~~~~~~~~~~~~i~~~i~~YN~~R~h 234 (262)
T PRK14702 155 EWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPH 234 (262)
T ss_pred EEEcCCCcccchHHHHHHHHHcCCeeccCCCCCCCcchHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 45588888999999999999999999999999999999999999999975 432221 33445555566679977 89
Q ss_pred CCC-CCChhhhhc
Q psy15955 434 TTL-GVSPAELHL 445 (475)
Q Consensus 434 ~~~-~~sP~~l~~ 445 (475)
+++ +.||.|..-
T Consensus 235 ~~L~~~tP~e~~~ 247 (262)
T PRK14702 235 SALGYRSPREYLR 247 (262)
T ss_pred cccCCCCHHHHHH
Confidence 998 599988743
No 251
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.12 E-value=0.0045 Score=53.58 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=67.0
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEec
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDF 322 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~ 322 (475)
..++|.|+++.++... ..+|-||++.+..+++... ...|..+.. .++.|||.+.|+|...+|. ++.|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4678999999998764 3468999998877665442 223443333 6799999999998777764 56799999997
Q ss_pred cCCC----CCeeeEEEEEcCcC
Q psy15955 323 DNIG----RNELIGRILLAGKN 340 (475)
Q Consensus 323 ~~~~----~d~~lG~~~i~l~~ 340 (475)
.... ....||.+.+++.+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 6421 23579999998865
No 252
>PRK09409 IS2 transposase TnpB; Reviewed
Probab=97.07 E-value=0.00058 Score=66.15 Aligned_cols=88 Identities=25% Similarity=0.285 Sum_probs=70.5
Q ss_pred cceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhh-hcc---ccchHHHHHHHHHHhcCc-cC
Q psy15955 359 QTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLR-KCN---WNNVDEELLNFSQSYNST-PH 433 (475)
Q Consensus 359 ~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~-~~~---~~~~~~~l~~~l~~y~~~-~~ 433 (475)
...++.+..+.+..|..++...|+.+..+.+.+|+.||.+|++++++|.-+. ... ..+....+..+...||+. ||
T Consensus 194 iihSDrGsqy~s~~~~~~l~~~gI~~Smsr~g~p~dNa~~Erf~~tlK~E~l~~~~~~~~~e~~~~i~~~i~~YN~~R~H 273 (301)
T PRK09409 194 EWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPH 273 (301)
T ss_pred EEecCCCcccccHHHHHHHHHcCCeEeeCCCCCCCccchhHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhccCCc
Confidence 4568888899999999999999999999999999999999999999997533 221 233445555666678877 89
Q ss_pred CCCC-CChhhhhcC
Q psy15955 434 TTLG-VSPAELHLG 446 (475)
Q Consensus 434 ~~~~-~sP~~l~~g 446 (475)
+++| .||.|..-.
T Consensus 274 ~~Lg~~tP~e~~~~ 287 (301)
T PRK09409 274 SALGYRSPREYLRQ 287 (301)
T ss_pred cccCCCCHHHHHhc
Confidence 9995 999987554
No 253
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.01 E-value=0.0062 Score=53.74 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=69.0
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEec
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDF 322 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~ 322 (475)
..++|+|+.+.++... ....+-||++.+..+++... ...|..+....++.|||.+.|+|...+|. ++.|.|+||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4688999999999762 23467889988877766543 33455555457799999999998777764 56799999997
Q ss_pred cCCC----------------CCeeeEEEEEcCcC
Q psy15955 323 DNIG----------------RNELIGRILLAGKN 340 (475)
Q Consensus 323 ~~~~----------------~d~~lG~~~i~l~~ 340 (475)
.... .+..||.+.+++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 6422 24689999997755
No 254
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.95 E-value=0.0066 Score=52.77 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=66.7
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEecc
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDFD 323 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~ 323 (475)
.++|.+....++... .....+-||++.+..+++... ...|.......++.|||.+.|++...+|. ++.|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 566777777776541 123467888888877665332 33444444447899999999998766664 567999999987
Q ss_pred CCC--CCeeeEEEEEcCcCC
Q psy15955 324 NIG--RNELIGRILLAGKNG 341 (475)
Q Consensus 324 ~~~--~d~~lG~~~i~l~~~ 341 (475)
..+ ++..||.+.+++.+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 654 468999999988653
No 255
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.84 E-value=0.0066 Score=52.72 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=59.6
Q ss_pred CCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEeccCCCCCeeeEEEEEcCcCC
Q psy15955 264 GKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDFDNIGRNELIGRILLAGKNG 341 (475)
Q Consensus 264 ~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~ 341 (475)
..++-||++.+..+++... ...|..+.-+..+.|||.+.|+|...+|. ++.|.|+||+....++...||.+.+++.+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4478899998877665432 23555555567789999999998877775 567999999988766778999999988654
No 256
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.80 E-value=0.0091 Score=51.01 Aligned_cols=128 Identities=23% Similarity=0.261 Sum_probs=88.8
Q ss_pred CCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc----------
Q psy15955 114 DNSTLILRVISAKELPAKDM--SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ---------- 181 (475)
Q Consensus 114 ~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~---------- 181 (475)
....|.+.|..++-...--. .+..+.-+.+++. -.+++++|+.+..+.+|.|+|.|.|+ ++.+...
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTLLS 84 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEE-ecccccccccchhHhhc
Confidence 34468889888876653321 1455666666653 35688999999999999999999998 5544311
Q ss_pred -cceEEEEEEeeCCCCCCccccceeeccccccCCCCc--ceeeccCCCCCC---cccceeeeeeecCC
Q psy15955 182 -SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKP--TFWKALKPPAKD---KCGELLTSLCYHPS 243 (475)
Q Consensus 182 -~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~--~~~~~L~~~~~~---~~G~l~l~l~~~~~ 243 (475)
...|++.|--.|..+...++|...+.-..+...+.. ..-..|.....+ ..|-|.++++..|.
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 245888888778776678999988888877666654 333444433333 67888888887764
No 257
>PLN02964 phosphatidylserine decarboxylase
Probab=96.77 E-value=0.0025 Score=67.09 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=71.2
Q ss_pred ecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEE
Q psy15955 240 YHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV 319 (475)
Q Consensus 240 ~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V 319 (475)
-.+-.+.+.+++++|+ ++. .|+|..+.-. ...++||...+.|.||+||+...|.|...+.+ ...|.|
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~----g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~ 115 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MKF---KDKWLACVSF----GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISV 115 (644)
T ss_pred cccccCeEEEEeehhh----hcc---CCcEEEEEEe----cceeeeeccccccCCcccchhhceEeccCCcc--eEEEEE
Confidence 3445688889988887 322 4888765322 23568999999999999999999998776654 369999
Q ss_pred EeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 320 MDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 320 ~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
||++++.+++++|.|.+++.+...
T Consensus 116 ~~~~~~s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 116 FETNRLSKNTLVGYCELDLFDFVT 139 (644)
T ss_pred EecCCCCHHHhhhheeecHhhccH
Confidence 999999999999999997765544
No 258
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.57 E-value=0.014 Score=51.57 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=70.7
Q ss_pred ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeee-eeccccc----CCCCCeecceEEEeecccccc-cceEEE
Q psy15955 244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEK-RKTQIFK----CNLNPVFNESFSFNVPWEKIR-ECSLNV 317 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~-~~T~~~~----~t~nP~w~e~f~f~v~~~~l~-~~~l~i 317 (475)
...+.|.|..+.+++........|-||.+.+..+++.... ..|+... -...+.|||.+.|++...+|- ++.|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3467888999999988765556789999998877765432 2333221 123577999999998766664 467999
Q ss_pred EEEeccCCC---------CCeeeEEEEEcCcCC
Q psy15955 318 MVMDFDNIG---------RNELIGRILLAGKNG 341 (475)
Q Consensus 318 ~V~d~~~~~---------~d~~lG~~~i~l~~~ 341 (475)
+||+....+ .+..||.+.+++.+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999977644 457999999988653
No 259
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.55 E-value=0.019 Score=50.56 Aligned_cols=94 Identities=14% Similarity=0.160 Sum_probs=62.6
Q ss_pred eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc-cceEEEEEEeccC
Q psy15955 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDFDN 324 (475)
Q Consensus 246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~~ 324 (475)
.++|.|..+.. +..+.......||++.+..++......+|.....+.++.|||.+.|+|...+|. ++.|.|+||+...
T Consensus 11 ~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 56677777663 333333334577888776655544444566666677899999999998777775 5679999999642
Q ss_pred CC----------------CCeeeEEEEEcCcC
Q psy15955 325 IG----------------RNELIGRILLAGKN 340 (475)
Q Consensus 325 ~~----------------~d~~lG~~~i~l~~ 340 (475)
.. .+..||.+.+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEc
Confidence 21 24577888886654
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.51 E-value=0.012 Score=51.99 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=54.9
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEE
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVF 190 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~ 190 (475)
...+.|+|+++.+|... ....+-||++.+.-++.. ...|+.+.....+.|||.+.|. +.+.++ ....|.|.||
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~ 83 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIY 83 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEE
Confidence 45799999999999862 244677888877433321 2355555545679999999998 666665 4578999999
Q ss_pred eeCC
Q psy15955 191 DYDR 194 (475)
Q Consensus 191 d~d~ 194 (475)
+...
T Consensus 84 ~~~~ 87 (173)
T cd08693 84 EVSK 87 (173)
T ss_pred Eecc
Confidence 9764
No 261
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.42 E-value=0.033 Score=47.63 Aligned_cols=103 Identities=19% Similarity=0.454 Sum_probs=76.2
Q ss_pred CCceeEEEEEEeeccCccccc--CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc--------
Q psy15955 242 PSNSVLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR-------- 311 (475)
Q Consensus 242 ~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-------- 311 (475)
|....|.+.|+.++-....-. .+..+..+.+++...++ +++|..+..+.+|.|+|.|.|.++.+...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~Q---RF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQ---RFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCc---eEecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 456788999999887643221 15567778888877664 46899999999999999999998755411
Q ss_pred ---cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCc
Q psy15955 312 ---ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQ 359 (475)
Q Consensus 312 ---~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~ 359 (475)
...|.+-|...+..+...++|.-.+ .|+.++..+..
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~l------------dWR~vL~s~~~ 121 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFL------------DWRKVLCSGNG 121 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeecee------------hHHHHhccCCC
Confidence 2468888888777766688888877 68887766553
No 262
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.37 E-value=0.025 Score=48.26 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=55.5
Q ss_pred cceEEEEEEeCceeee--eeecccccCC-CCCeecceEEEeecccccc-cceEEEEEEeccCCCCC----eeeEEEEEcC
Q psy15955 267 DPYVKVWLQFGEKRIE--KRKTQIFKCN-LNPVFNESFSFNVPWEKIR-ECSLNVMVMDFDNIGRN----ELIGRILLAG 338 (475)
Q Consensus 267 dpyv~v~l~~~~~~~~--~~~T~~~~~t-~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d----~~lG~~~i~l 338 (475)
+-||.+.+..+++... ...|....-+ .++.|+|.+.|++...+|. ++.|.|+||..+..... ..||.+.+++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 4678888877776654 3467666666 7999999999998777764 56799999998876555 7999999988
Q ss_pred cCC
Q psy15955 339 KNG 341 (475)
Q Consensus 339 ~~~ 341 (475)
.+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 654
No 263
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.25 E-value=0.023 Score=49.25 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=64.2
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEE
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVF 190 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~ 190 (475)
...++|+|+++.++.-.+ .+|-||++.+..++.. ...|+.+.. .++.|||...|. +.+.++ ..+.|.|+||
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~ 81 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEE
Confidence 457999999999998643 4688999987543321 123443333 579999999998 666665 4578999999
Q ss_pred eeCCCC----CCccccceeeccccc
Q psy15955 191 DYDRFS----RDDSIGEVFLPLCQV 211 (475)
Q Consensus 191 d~d~~~----~~~~iG~~~i~l~~l 211 (475)
+....+ ....+|.+.++|-+.
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEECC
Confidence 976421 224588888888664
No 264
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.95 E-value=0.13 Score=43.67 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=73.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEee-eecCCCCceeeeeEEeeccccc------ccccceEEE
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK-IKRRTLNPRWNETLYFEGFPIQ------KLQSRVLHL 187 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~-v~~~~~nP~w~e~f~f~~~~~~------~~~~~~L~~ 187 (475)
.+.|.|....+++... ...||+... .+.. ...|. +...+-.-.|++.|.+. ..+. .++...+.|
T Consensus 8 ~~~l~i~~l~~~p~~~----~~v~v~wkr--~~~~~~~~~t~~~~~~~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 8 QFDLTIHELENLPSSN----GKVFVKWKR--GDKSKGSGTTSRANVKNGKVQWNEEFSFP-CTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEeECcCCCC----CEEEEEEEE--CCCCccceeeeeeeccccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEE
Confidence 5788889999888721 223444443 2222 33444 33345568999999887 2221 245567999
Q ss_pred EEEeeCCCCCCccccceeeccccccCCC--CcceeeccCCCCCCcccceeeeeeec
Q psy15955 188 HVFDYDRFSRDDSIGEVFLPLCQVDLSE--KPTFWKALKPPAKDKCGELLTSLCYH 241 (475)
Q Consensus 188 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~--~~~~~~~L~~~~~~~~G~l~l~l~~~ 241 (475)
.|+.....++...+|.+.+.|++..... ....-++|... ......|.+++.+.
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~-~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC-KKSNATLSISISLS 135 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC-CCCCcEEEEEEEEE
Confidence 9998754344368999999999997653 33445555543 35556677776654
No 265
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.85 E-value=0.039 Score=47.90 Aligned_cols=95 Identities=24% Similarity=0.326 Sum_probs=64.8
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEE
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVF 190 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~ 190 (475)
...++|++....++...+ ....+-||.+.+.-++.. ...|.......++.|||...|. +.+.++ ....|.|+||
T Consensus 7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~ 84 (156)
T cd08380 7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY 84 (156)
T ss_pred CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence 346788888888876521 234677888877533321 2244444434689999999998 555554 4678999999
Q ss_pred eeCCCC--CCccccceeeccccc
Q psy15955 191 DYDRFS--RDDSIGEVFLPLCQV 211 (475)
Q Consensus 191 d~d~~~--~~~~iG~~~i~l~~l 211 (475)
+.+..+ .+..||.+.++|-+.
T Consensus 85 ~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCCCCcceEEEEEeEEeEcc
Confidence 987554 467899999998664
No 266
>KOG1265|consensus
Probab=95.84 E-value=0.014 Score=61.75 Aligned_cols=89 Identities=22% Similarity=0.384 Sum_probs=66.3
Q ss_pred ceeEEEEEEeeccCcccccCCCccceEEEEEE--eCceeeeeeeccccc-CCCCCeecc-eEEEe-ecccccccceEEEE
Q psy15955 244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQ--FGEKRIEKRKTQIFK-CNLNPVFNE-SFSFN-VPWEKIRECSLNVM 318 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~--~~~~~~~~~~T~~~~-~t~nP~w~e-~f~f~-v~~~~l~~~~l~i~ 318 (475)
...+.|+|+.+.=|..++ ...||.|.+. +.+.....++|+++. ++.||+|+| .|.|. |-..+| +.|.|.
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRia 775 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIA 775 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeee
Confidence 357899999999887654 4589999884 333333556777776 579999996 68887 555666 479999
Q ss_pred EEeccCCCCCeeeEEEEEcCcCCC
Q psy15955 319 VMDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 319 V~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
||+.. ..+||+-.+|+..+.
T Consensus 776 vyeEg----gK~ig~RIlpvd~l~ 795 (1189)
T KOG1265|consen 776 VYEEG----GKFIGQRILPVDGLN 795 (1189)
T ss_pred eeccC----Cceeeeeccchhccc
Confidence 99854 579999999875444
No 267
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=95.78 E-value=0.0013 Score=54.19 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=47.1
Q ss_pred CCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHh
Q psy15955 357 PRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFL 409 (475)
Q Consensus 357 p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l 409 (475)
|....++.+.-+.+..|+.+|..+|+.+..++++.|+.||.+||+++++++.+
T Consensus 68 p~~i~tD~g~~f~~~~~~~~~~~~~i~~~~~~~~~p~~ng~vEr~~~~l~~~~ 120 (120)
T PF00665_consen 68 PRVIRTDNGSEFTSHAFEAWCKHLGIKHVFTPPYTPQQNGFVERFNRTLKRRI 120 (120)
T ss_dssp -SEEEEESCHHHHSHHHHHHHHHHT-EEEESSTSSTHHHHHHHHHHHHHHHHH
T ss_pred ceecccccccccccchhhhHHHHcCceEeeCCCCChhhccHHHHHHHHHHHhC
Confidence 67788888888888899999999999999999999999999999999998753
No 268
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.77 E-value=0.08 Score=51.64 Aligned_cols=116 Identities=25% Similarity=0.382 Sum_probs=84.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc-----cccceEEEEEEee
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK-----LQSRVLHLHVFDY 192 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~-----~~~~~L~~~V~d~ 192 (475)
+.|.|++|++.+... .-.-.+...+ ++....|..+..+-.|.||.+..++ +.... .+...|++++|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~---ng~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF---NGESLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe---CCceeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEe
Confidence 678999999999773 1234566666 4567789989999999999998776 33322 2456799999988
Q ss_pred C-CCCCCccccceeeccccc---cCC--CCcceeeccCCCCC---Ccccceeeeeee
Q psy15955 193 D-RFSRDDSIGEVFLPLCQV---DLS--EKPTFWKALKPPAK---DKCGELLTSLCY 240 (475)
Q Consensus 193 d-~~~~~~~iG~~~i~l~~l---~~~--~~~~~~~~L~~~~~---~~~G~l~l~l~~ 240 (475)
| ..+..+.||.+.++|... ..+ .....||+|..... +..-+|.+++..
T Consensus 75 ~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i 131 (340)
T PF12416_consen 75 DGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI 131 (340)
T ss_pred cCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence 8 556778999999999988 444 34568999987633 234566666644
No 269
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=95.53 E-value=0.0051 Score=57.03 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
.=+++++++.|+||+|+|+||+|++|...|...+...+
T Consensus 200 ~v~~n~r~l~RvYP~GtRidSSNynP~~~W~~G~QmVA 237 (257)
T cd08595 200 FVGHTQRFITRIYPKGTRASSSNYNPQEFWNVGCQMVA 237 (257)
T ss_pred HHHHhhcCCceeCcCCCCCCCCCCCcHHHHcCCCeEEE
Confidence 44789999999999999999999999887544443333
No 270
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=95.47 E-value=0.0059 Score=56.91 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=32.2
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCC
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSS 59 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (475)
.=+++++.+.|+||+|+|+||+|++|...| ..|+++.+-+-
T Consensus 203 ~v~~n~~~l~RvYP~G~RvdSSNynP~~~W----~~G~QmVALN~ 243 (260)
T cd08597 203 FVNYNKKFLSRVYPSPMRVDSSNYNPQDFW----NCGCQIVAMNY 243 (260)
T ss_pred HHHHhhhcCceeCcCCCCCCCCCCCchHHh----cCCCeEeeecc
Confidence 447899999999999999999999998874 44554444333
No 271
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.45 E-value=0.034 Score=48.32 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=55.5
Q ss_pred CCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEeeCCCCCCccccceeecccc
Q psy15955 135 GTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQ 210 (475)
Q Consensus 135 ~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~ 210 (475)
..+|-||.+.+..++.. ...|+.+.-+..+.|||...|. |.+.++ ..+.|.|+|||.+..++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 45788888887533321 2355555556678999999998 666665 457899999998866567789999999866
Q ss_pred c
Q psy15955 211 V 211 (475)
Q Consensus 211 l 211 (475)
-
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 4
No 272
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.38 E-value=0.044 Score=48.34 Aligned_cols=96 Identities=22% Similarity=0.322 Sum_probs=66.6
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeee--cC--CCCceeeeeEEeeccccccc-ccceEE
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIK--RR--TLNPRWNETLYFEGFPIQKL-QSRVLH 186 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~--~~--~~nP~w~e~f~f~~~~~~~~-~~~~L~ 186 (475)
...+.|+|.++.+++........|-||.+.+.-++.. ...|+.. .+ ...+.|||...|. +.+.++ ....|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence 4568899999999998775556889999987533321 1234321 11 2357799999998 555554 467899
Q ss_pred EEEEeeCCCC---------CCccccceeeccccc
Q psy15955 187 LHVFDYDRFS---------RDDSIGEVFLPLCQV 211 (475)
Q Consensus 187 ~~V~d~d~~~---------~~~~iG~~~i~l~~l 211 (475)
|++|+....+ .+..||.+.++|-+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999977543 346788888888664
No 273
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=95.36 E-value=0.0064 Score=56.49 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=30.1
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
.=+++++++.|+||+|+|+||+|++|...|...+...+
T Consensus 201 ~v~~n~~~l~RiYPkgtRidSSNynP~~~W~~G~QmVA 238 (258)
T cd08630 201 FVRHNARQLTRVYPLGLRMNSANYSPQEMWNSGCQLVA 238 (258)
T ss_pred HHHhhhcccceeCCCCCcCCCCCCCcHHHhcCCCeEEE
Confidence 34679999999999999999999999877544444333
No 274
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=95.05 E-value=0.0091 Score=55.14 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=30.0
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
.=+++++++.||||+|+|+||+|++|...|...+...+
T Consensus 197 ~v~~N~~~l~RvYP~G~RvdSSNy~P~~~W~~G~QmVA 234 (254)
T cd08633 197 YLRFNQRQLSRIYPSSYRVDSSNYNPQPFWNAGCQMVA 234 (254)
T ss_pred HHHhhhhcccccCCCCCCCCCCCCCchHHhcCCCeEEE
Confidence 34689999999999999999999999877544443333
No 275
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=95.01 E-value=0.16 Score=40.29 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=52.0
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEeccC
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDFDN 324 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~~ 324 (475)
+.+.+....+.........++-||++.+..+++... ...|..+.-...+.|||.+.|++...+|. ++.|.|+||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 445555555554433222358999998877665543 23455545456689999999998777764 5679999998653
No 276
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=94.99 E-value=0.0092 Score=55.33 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
.=+++++++.|+||+|+|+||+|++|...|...+...+
T Consensus 200 ~v~~n~~~l~RiYP~G~RvdSSNynP~~~W~~G~QmVA 237 (257)
T cd08626 200 FVNYNKRQMSRIYPKGTRVDSSNYMPQIFWNAGCQMVS 237 (257)
T ss_pred HHHHhhhcCceeCcCCCCCcCCCCCcHHHhcCCCeEEE
Confidence 34789999999999999999999999887544443333
No 277
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=94.95 E-value=0.0096 Score=54.88 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=32.1
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCC
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSS 59 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (475)
.-+++++++.||||+|+|+||||++|...| ..|+++.+-+-
T Consensus 196 ~v~~n~~~l~RvYP~g~RidSSNy~P~~~W----~~G~QmVAlN~ 236 (253)
T cd08632 196 FMTYNQKQLTRIYPSAYRIDSSNFNPLPYW----NVGCQLVALNY 236 (253)
T ss_pred HHHHhhhccceeCCCCCcCcCCCCCcHHHh----cCCCeEEEecc
Confidence 347899999999999999999999998774 45555444433
No 278
>KOG3837|consensus
Probab=94.95 E-value=0.0092 Score=57.88 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=70.9
Q ss_pred ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc-----cc----ccce
Q psy15955 244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE-----KI----RECS 314 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-----~l----~~~~ 314 (475)
...|.+.|.++++++.....-..|-||++..........+-+|.+++.+.+|.|+|.|...|... ++ ....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 55788888889888765543446889988763222223456899999999999999998887531 11 1346
Q ss_pred EEEEEEeccCC-CCCeeeEEEEEcCcC
Q psy15955 315 LNVMVMDFDNI-GRNELIGRILLAGKN 340 (475)
Q Consensus 315 l~i~V~d~~~~-~~d~~lG~~~i~l~~ 340 (475)
+.|+|++...+ .+|.++|.+.+.+.-
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~ 472 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEI 472 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehh
Confidence 89999998875 668999999996643
No 279
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=94.88 E-value=0.0092 Score=55.32 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=30.1
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
.=+++++++.||||+|+|+||+|++|...|...+...+
T Consensus 201 ~v~~n~~~l~RiYP~g~RvdSSNy~P~~~W~~G~QmVA 238 (258)
T cd08629 201 FVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVA 238 (258)
T ss_pred HHHhchhccceeCCCCCCCCCCCCCchHHhcCCceEEE
Confidence 34679999999999999999999999877544443333
No 280
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.69 E-value=0.17 Score=49.48 Aligned_cols=101 Identities=15% Similarity=0.380 Sum_probs=71.9
Q ss_pred EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc-----cceEEEEEEe
Q psy15955 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR-----ECSLNVMVMD 321 (475)
Q Consensus 247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-----~~~l~i~V~d 321 (475)
+.|.|++|++++... .-...+...+ ++.. -.|..+..+..|.||....+.+....+. ..+|++++|.
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~--ng~~---l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a 73 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF--NGES---LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFA 73 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe--CCce---eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEE
Confidence 578899999998762 2344555544 3333 3688888899999999999987544443 5789999999
Q ss_pred cc-CCCCCeeeEEEEEcCcCC---CCC--ccccccccccc
Q psy15955 322 FD-NIGRNELIGRILLAGKNG---SGA--SETKHWQDMIT 355 (475)
Q Consensus 322 ~~-~~~~d~~lG~~~i~l~~~---~~~--~~~~~w~~~~~ 355 (475)
.+ ..++.+.||.+.++|... ..+ .....|+.+++
T Consensus 74 ~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~ 113 (340)
T PF12416_consen 74 VDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLS 113 (340)
T ss_pred ecCCCCcceeccEEEEEccccccccccccccCCCeeEccc
Confidence 88 557789999999998665 332 23345555554
No 281
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=94.66 E-value=0.015 Score=53.94 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=31.1
Q ss_pred HHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccc
Q psy15955 17 RFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIA 54 (475)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (475)
+++++.+.||||+|+|+||+|++|...|...+...+.+
T Consensus 199 ~~N~~~l~RvYP~G~RvdSSNynP~~~W~~G~QmVALN 236 (254)
T cd08628 199 KYNRKGLTRVYPKGQRVDSSNYDPFRLWLCGSQMVALN 236 (254)
T ss_pred HHhHhhhhhhCCCCCcCCCCCCCchHHhcCCCeEEEee
Confidence 78999999999999999999999988765555444433
No 282
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=94.64 E-value=0.0099 Score=55.04 Aligned_cols=37 Identities=16% Similarity=0.015 Sum_probs=29.9
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCC
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEG 51 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (475)
.=+++++++.|+||+|+|+||+|++|...|...+...
T Consensus 197 lv~~n~~~l~RiYP~g~RvdSSNynP~~~W~~G~QmV 233 (254)
T cd08596 197 LVQHTRCQLLRTYPAATRIDSSNPNPLIFWLHGLQLV 233 (254)
T ss_pred HHHhhhhcceeeccCCCcCCCCCCCcHHHHhCCCeEE
Confidence 4578999999999999999999999987744443333
No 283
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=94.47 E-value=0.014 Score=54.17 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS 58 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (475)
.=+++++++.|+||+|+|+||+|++|...| ..|+++.+-+
T Consensus 201 ~v~~n~~~l~RiYP~g~RvdSSNy~P~~~W----~~G~QmVALN 240 (258)
T cd08631 201 FVQHNTWQLSRVYPSGLRTDSSNYNPQEMW----NAGCQMVALN 240 (258)
T ss_pred HHHHHHhcCceeCcCCCCCCCCCCCcHHHH----hCCCeEeeec
Confidence 346899999999999999999999998774 4555544443
No 284
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=94.45 E-value=0.015 Score=53.93 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
.=+++++++.|+||+|+|+||+|++|...|...+...+
T Consensus 200 ~v~~n~~~l~RvYP~g~RvdSSNynP~~~W~~G~QmVA 237 (257)
T cd08591 200 FVNYNKRQLSRIYPKGTRVDSSNYMPQIFWNAGCQMVA 237 (257)
T ss_pred HHHHhhhcCceeCcCCCcCcCCCCCcHHHhcCCCeEEE
Confidence 33689999999999999999999999877544444443
No 285
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=94.30 E-value=0.019 Score=52.36 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=31.1
Q ss_pred HHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccc
Q psy15955 16 SRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIA 54 (475)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (475)
=+++++++.|+||+|+|+||||++|...|...+...+.+
T Consensus 173 v~~n~~~l~RvYP~g~RvdSSNy~P~~~W~~G~QmVAlN 211 (229)
T cd08592 173 LKYNRRQLSRVYPKGQRVDSSNYDPVPMWNCGSQMVALN 211 (229)
T ss_pred HHhhhhcceeeCCCCCcCcCCCCCchHHhcCCceEEEee
Confidence 358899999999999999999999988755554444433
No 286
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.28 E-value=0.49 Score=42.08 Aligned_cols=42 Identities=24% Similarity=0.464 Sum_probs=36.7
Q ss_pred eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
.++|-|...+.+|.|+|++.+. +|.+.....-|.|++++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeee
Confidence 5689999999999999999999 89888888899999987543
No 287
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=94.21 E-value=0.018 Score=52.30 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcc
Q psy15955 16 SRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAI 53 (475)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (475)
-+++++.+.|+||+|+|+||+|++|...|...+...+.
T Consensus 171 v~~n~~~l~RiYP~g~RvdSSNy~P~~~W~~G~QmVAL 208 (227)
T cd08594 171 LRFNQRQLSRIYPSAYRIDSSNFNPQPYWNAGCQLVAL 208 (227)
T ss_pred HHhcccccceeCCCCCcCcCCCCCchHHhcCCceEEEe
Confidence 36788999999999999999999998875555444443
No 288
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=94.10 E-value=0.024 Score=52.89 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=32.2
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccC
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIAS 55 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (475)
.=+++++.+.|+||+|+|+||+|++|...|...+...+.+=
T Consensus 201 ~v~~N~~~l~RvYP~G~RvdSSNydP~~~W~~G~QmVALN~ 241 (258)
T cd08625 201 FVEYNKKQLSRIYPKGTRVDSSNYMPQLFWNVGCQMVALNF 241 (258)
T ss_pred HHHhhhcceeeeccCCCcCcCCCCCChhHhcCcceEEEeec
Confidence 34678999999999999999999999877655555555443
No 289
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=93.96 E-value=0.023 Score=52.84 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=31.9
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIA 54 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (475)
.=.++++.+.|+||+|+|+||+|++|...|...+...+.+
T Consensus 204 fv~~N~~~l~RiYP~G~RvdSSNynP~~~W~~G~QmVALN 243 (261)
T cd08624 204 FVEYNKRQMSRIYPKGTRMDSSNYMPQMFWNVGCQMVALN 243 (261)
T ss_pred HHHhchhheeeeCCCCCcccCcCCCchHHhcCCCeEEEec
Confidence 3467889999999999999999999988765555555444
No 290
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.93 E-value=0.63 Score=41.46 Aligned_cols=42 Identities=21% Similarity=0.379 Sum_probs=36.8
Q ss_pred eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
.++|-|...+.+|.|+|++.+. +|.+.....-|.|++++...
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeecc
Confidence 5688898999999999999999 89888888899999987653
No 291
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.88 E-value=0.13 Score=43.77 Aligned_cols=72 Identities=26% Similarity=0.410 Sum_probs=49.5
Q ss_pred cEEEEEEeCCCC----ceEEeeeecCC-CCceeeeeEEeeccccccc-ccceEEEEEEeeCCCCCC----ccccceeecc
Q psy15955 139 PYVKVALLPDKK----HRLETKIKRRT-LNPRWNETLYFEGFPIQKL-QSRVLHLHVFDYDRFSRD----DSIGEVFLPL 208 (475)
Q Consensus 139 pyv~v~l~~~~~----~~~kT~v~~~~-~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~d~~~~~----~~iG~~~i~l 208 (475)
.||.+.+.-++. ....|....-+ .++.|+|...|. +...++ ....|.|+||+.+..... ..||.+.++|
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 466666643322 12356666655 799999999998 666665 467899999998865554 6899999998
Q ss_pred ccc
Q psy15955 209 CQV 211 (475)
Q Consensus 209 ~~l 211 (475)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 665
No 292
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=93.68 E-value=0.021 Score=53.15 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=30.1
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
.=+++++.+.|+||+|+|+||+|++|...|...+...+
T Consensus 200 lv~~n~~~l~RvYP~g~RidSSNynP~~~W~~G~QmVA 237 (257)
T cd08593 200 FVRHNKRQLSRIYPAGLRTDSSNYDPQEMWNVGCQIVA 237 (257)
T ss_pred HHHhhhhccceeCCCCCcCCCCCCCcHHHHhCCCeEee
Confidence 34689999999999999999999999877544443333
No 293
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.53 E-value=0.41 Score=42.26 Aligned_cols=78 Identities=17% Similarity=0.305 Sum_probs=50.2
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEe
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFD 191 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d 191 (475)
...++|+|.++. .+..+......-||++.+.-++. ...+|.....+.++.|||...|. +...++ ....|.|+||+
T Consensus 9 ~~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 9 DRKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence 446888888876 33333233334667776543221 12256666666789999999998 666665 45789999999
Q ss_pred eCC
Q psy15955 192 YDR 194 (475)
Q Consensus 192 ~d~ 194 (475)
...
T Consensus 87 ~~~ 89 (178)
T cd08399 87 GKA 89 (178)
T ss_pred Eec
Confidence 753
No 294
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=93.47 E-value=0.029 Score=51.25 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=30.6
Q ss_pred hHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 14 TLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
..-+++++.+.|+||+|+|+||+|++|...|...+...+
T Consensus 170 ~~v~~n~~~l~RvYP~g~RvdSSNy~P~~~W~~G~QmVA 208 (228)
T cd08599 170 DLIEFTQKNLLRVYPAGLRITSSNYDPMLAWMHGAQMVA 208 (228)
T ss_pred HHHHHhhccceeeccCCcccCCCCCCChHHhcCcceEee
Confidence 344789999999999999999999999777544443333
No 295
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=93.47 E-value=0.04 Score=51.25 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccc
Q psy15955 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIA 54 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (475)
.=+.+++.+.|+||+|+|+||+|++|...|...+...+.+
T Consensus 201 ~v~~N~~~l~RvYP~G~RvdSSNy~P~~~W~~G~QmVALN 240 (258)
T cd08623 201 FVEYNKMQLSRIYPKGTRVDSSNYMPQLFWNAGCQMVALN 240 (258)
T ss_pred HHHHhhhhceeeccCCCcccCCCCCChhhhcCCceEEEee
Confidence 3468899999999999999999999977755544444433
No 296
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=93.43 E-value=1 Score=40.19 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=38.2
Q ss_pred eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCC---eeeEEEEEcCcC
Q psy15955 282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRN---ELIGRILLAGKN 340 (475)
Q Consensus 282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d---~~lG~~~i~l~~ 340 (475)
..+.|.+...+.+|.|+|+|.+.+|.....+.-|.|++++...-.+. ..+|-+.++|-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 44578888888999999999999998777778899999997654322 689999998855
No 297
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=93.26 E-value=0.029 Score=51.20 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=31.5
Q ss_pred hhHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 13 LTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
...-.++++.+.||||+|+|+||+|++|...|...+...+
T Consensus 167 ~~l~~~n~~~l~RvYP~g~RvdSSNynP~~~W~~G~QmVA 206 (226)
T cd08558 167 EEFVKYNKRQLSRVYPKGTRVDSSNYNPQPFWNAGCQMVA 206 (226)
T ss_pred HHHHHhcccceeEECcCCCcCCCCCCCcHHHHhCCCeEee
Confidence 3455678999999999999999999999887544444443
No 298
>KOG1452|consensus
Probab=93.03 E-value=0.46 Score=44.82 Aligned_cols=121 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred EEeCCCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEE
Q psy15955 110 EYDFDNSTLILRVISAKELPAKDM--SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHL 187 (475)
Q Consensus 110 ~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~ 187 (475)
......|.|.++++.+|+|..... +-.-+-||++.. +..++.+|.|.....-=.|.|+|..++ - ....+.+
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--drqh~aRt~vrs~~~~f~w~e~F~~Dv---v--~~~vl~~ 117 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--DRQHPARTRVRSSGPGFAWAEDFKHDV---V--NIEVLHY 117 (442)
T ss_pred eeecccceEEEEEecccccccChhccCceeeeeeeeee--cccCccccccccCCCCccchhhceeec---c--cceeeeE
Confidence 334568899999999999985432 335688998887 444556777777777778999998763 2 2457889
Q ss_pred EEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeec
Q psy15955 188 HVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYH 241 (475)
Q Consensus 188 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~ 241 (475)
-||.|+.-.++.+.-.-.+.+..+. .......+.|. -+++|++.+.+.+.
T Consensus 118 lvySW~pq~RHKLC~~g~l~~~~v~-rqspd~~~Al~---lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 118 LVYSWPPQRRHKLCHLGLLEAFVVD-RQSPDRVVALY---LEPRGQPPLRLPLA 167 (442)
T ss_pred EEeecCchhhccccccchhhhhhhh-hcCCcceeeee---cccCCCCceecccC
Confidence 9999987655555333233333332 11222222221 13456766666553
No 299
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.91 E-value=0.83 Score=35.10 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCC
Q psy15955 137 SDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216 (475)
Q Consensus 137 ~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~ 216 (475)
++..+.+.+ +.....+|.-... .+..|++.|.|+ .+ ..+.|+|.||=.|. ..+.|...+.|++..
T Consensus 9 ~eV~avLkl--Dn~~VgqT~Wk~~-s~q~WDQ~Fti~---Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~---- 73 (98)
T cd08687 9 SEVSAVLKL--DNTVVGQTQWKPK-SNQAWDQSFTLE---LE--RSRELEIAVYWRDW---RSLCAVKFLKLEDER---- 73 (98)
T ss_pred cceEEEEEE--cCeEEeecccccc-ccccccceeEEE---ee--cccEEEEEEEEecc---hhhhhheeeEhhhhc----
Confidence 567777887 3444556665443 478899999987 33 46789999997664 357888888888832
Q ss_pred cceeeccCCCCCCcccceeeeeee
Q psy15955 217 PTFWKALKPPAKDKCGELLTSLCY 240 (475)
Q Consensus 217 ~~~~~~L~~~~~~~~G~l~l~l~~ 240 (475)
+..-.+|. +.|.+...+.|
T Consensus 74 ~~~~~~le-----pqg~l~~ev~f 92 (98)
T cd08687 74 HEVQLDME-----PQLCLVAELTF 92 (98)
T ss_pred ccceeccc-----cccEEEEEEEe
Confidence 23344444 34777777666
No 300
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=92.62 E-value=0.28 Score=43.52 Aligned_cols=57 Identities=18% Similarity=0.322 Sum_probs=45.6
Q ss_pred eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCC--CeeeEEEEEcC
Q psy15955 282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGR--NELIGRILLAG 338 (475)
Q Consensus 282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~--d~~lG~~~i~l 338 (475)
..++|.+...+.+|.|+|++.+.||.+...+.-|.|++++.....+ ...+|-..++|
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 3467888888999999999999999998888899999988554321 25688887776
No 301
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=92.35 E-value=1.7 Score=34.45 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=52.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEee
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDY 192 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~ 192 (475)
.+.+.+....+.........++-||.+.+..++.. ...|+.+.-...+.|||...|. +...++ ....|.|+||+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEe
Confidence 36677777777765544344689999987543322 2245555545568999999998 666655 457899999986
Q ss_pred CC
Q psy15955 193 DR 194 (475)
Q Consensus 193 d~ 194 (475)
..
T Consensus 91 ~~ 92 (100)
T smart00142 91 KN 92 (100)
T ss_pred eC
Confidence 53
No 302
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=92.23 E-value=0.045 Score=49.85 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=29.2
Q ss_pred HHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955 17 RFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA 52 (475)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (475)
+++++++.|+||+|+|+||+|++|...|...+...+
T Consensus 174 ~~n~~~l~RiYP~G~RidSSNy~P~~~W~~G~QmVA 209 (229)
T cd08627 174 QYNRRQLSRIYPKGQRLDSSNYDPLPMWICGSQLVA 209 (229)
T ss_pred HhcccceeEeCCCCCcCcCCCCCchhHhccCcEEEE
Confidence 588999999999999999999999877544444433
No 303
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.78 E-value=1.2 Score=37.78 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=57.8
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeecc------cccccceEEE
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPW------EKIRECSLNV 317 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~------~~l~~~~l~i 317 (475)
-.+.+.|.+..+++. .+..+.|.+..+++......|.... ....-.|++.|.+.+.. ..+....+.|
T Consensus 7 f~~~l~i~~l~~~p~------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 7 FQFDLTIHELENLPS------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEEeECcCC------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 356788888888876 2334444443333221112333222 34556899999998643 1255677999
Q ss_pred EEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 318 MVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 318 ~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
.|+.....++...+|.+.|.|+++..
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhC
Confidence 99987543444699999999877665
No 304
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=91.50 E-value=0.37 Score=43.05 Aligned_cols=58 Identities=17% Similarity=0.356 Sum_probs=36.3
Q ss_pred eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCC---ccccceeecccc
Q psy15955 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRD---DSIGEVFLPLCQ 210 (475)
Q Consensus 152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~---~~iG~~~i~l~~ 210 (475)
.+.|.|..++.+|.|+|+|.+. +|.......-|.|++++...-.+. ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4578899999999999999999 888777778899999987643221 578887777755
No 305
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=90.90 E-value=0.08 Score=48.51 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=30.3
Q ss_pred hhHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCC
Q psy15955 13 LTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAME 50 (475)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (475)
...=+++++.+.|+||+|+|+||+|++|...|...+..
T Consensus 172 ~~lv~~n~~~l~RvYP~g~RvdSSNynP~~~W~~G~Qm 209 (231)
T cd08598 172 AALDKHNRRHLMRVYPSGTRISSSNFNPLPFWRAGVQM 209 (231)
T ss_pred HHHHHHhhhceeeeCCCCCcCCCCCCCcHHHHhCCCeE
Confidence 34457899999999999999999999998774443333
No 306
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=90.45 E-value=2.1 Score=37.89 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=39.8
Q ss_pred EEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC-----CCccccceeecccc
Q psy15955 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS-----RDDSIGEVFLPLCQ 210 (475)
Q Consensus 153 ~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~-----~~~~iG~~~i~l~~ 210 (475)
++|-+..+ .+|.|+|+|... +|.......-|.|++++...-. ....+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 899999999999 7777666788999999876322 24567777666643
No 307
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.26 E-value=0.84 Score=40.71 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=45.2
Q ss_pred eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC-CCC---eeeEEEEEcC
Q psy15955 282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI-GRN---ELIGRILLAG 338 (475)
Q Consensus 282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~-~~d---~~lG~~~i~l 338 (475)
..++|.+.....+|.|+|++.+.||.+...+.-|.|++++.... .+| ..+|-..++|
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 45678888889999999999999999998888999999886532 122 4677777766
No 308
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=89.12 E-value=5.9 Score=35.20 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=35.8
Q ss_pred eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD 193 (475)
Q Consensus 152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d 193 (475)
...|.|..++.+|.|.|++.+. +|.......-|.|+.|+..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeec
Confidence 4578899999999999999998 8887777778999999876
No 309
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=85.58 E-value=2 Score=38.00 Aligned_cols=42 Identities=10% Similarity=0.229 Sum_probs=36.0
Q ss_pred eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
...|.|...+.+|.|+|++... +|.......-|.|+.++.+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeec
Confidence 4578899999999999999998 88777677789999998664
No 310
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=84.30 E-value=1.7 Score=34.96 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=46.9
Q ss_pred EEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc-----cccceEEEEEEeeCCCCCCccccceeeccccccCC
Q psy15955 140 YVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK-----LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214 (475)
Q Consensus 140 yv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~-----~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~ 214 (475)
||.+.+. +-....|.++. +.+|.+|-+-.|. +...+ ++...+.++++..-. .....+|.+.+++..+...
T Consensus 2 Fct~dFy--dfEtq~Tpvv~-G~~p~y~fts~y~-V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFY--DFETQTTPVVR-GLNPFYDFTSQYK-VTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-ST--T---EE---EE-SSS----EEEEEE-E--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH-
T ss_pred EEEEEee--ceeeeccccee-CCCccceeEEEEE-EEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcC
Confidence 4444442 33445677776 8899999887776 44433 345789999998763 3467899999999998744
Q ss_pred CC--cceeeccCCCCCCcccceeeeee
Q psy15955 215 EK--PTFWKALKPPAKDKCGELLTSLC 239 (475)
Q Consensus 215 ~~--~~~~~~L~~~~~~~~G~l~l~l~ 239 (475)
.. ......|....++.-|.|.+.++
T Consensus 77 ~~~~i~~~~~l~g~~~~~~g~l~y~~r 103 (107)
T PF11618_consen 77 NGERIHGSATLVGVSGEDFGTLEYWIR 103 (107)
T ss_dssp -S--EEEEEEE-BSSS-TSEEEEEEEE
T ss_pred CCceEEEEEEEeccCCCeEEEEEEEEE
Confidence 33 33445555555556666665554
No 311
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=82.38 E-value=3.3 Score=36.71 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=41.7
Q ss_pred eecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC-----CCCeeeEEEEEcCcC
Q psy15955 284 RKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI-----GRNELIGRILLAGKN 340 (475)
Q Consensus 284 ~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~-----~~d~~lG~~~i~l~~ 340 (475)
++|-+... .+|.|+++|.+.+|.....+.-|.|++++.... .....+|-+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 899999999999987665677899999986643 235789999998743
No 312
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=82.11 E-value=13 Score=33.14 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=44.4
Q ss_pred eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC--C-------CCeeeEEEEEcCc
Q psy15955 282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI--G-------RNELIGRILLAGK 339 (475)
Q Consensus 282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~--~-------~d~~lG~~~i~l~ 339 (475)
....|.+...+.+|.|.|++.+.+|...-...-|.|++++.... . ....+|-+.+||-
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl 122 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL 122 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence 34578888889999999999999988776677899999997621 1 1356788777763
No 313
>KOG1452|consensus
Probab=81.67 E-value=4.1 Score=38.65 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=54.3
Q ss_pred eecCCceeEEEEEEeeccCccccc--CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEE
Q psy15955 239 CYHPSNSVLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLN 316 (475)
Q Consensus 239 ~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~ 316 (475)
......|.|.+.++++|+|..... +-+.+-|+.+ .++. ..+.+|.+.....--.|.|.|+.++-.. ..+.
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVl--e~dr--qh~aRt~vrs~~~~f~w~e~F~~Dvv~~----~vl~ 116 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVL--EPDR--QHPARTRVRSSGPGFAWAEDFKHDVVNI----EVLH 116 (442)
T ss_pred eeecccceEEEEEecccccccChhccCceeeeeeee--eecc--cCccccccccCCCCccchhhceeecccc----eeee
Confidence 344567899999999999976543 4456778776 4442 2344566554445556889988876422 2577
Q ss_pred EEEEeccCCCCCe
Q psy15955 317 VMVMDFDNIGRNE 329 (475)
Q Consensus 317 i~V~d~~~~~~d~ 329 (475)
+-||.|+.-.++.
T Consensus 117 ~lvySW~pq~RHK 129 (442)
T KOG1452|consen 117 YLVYSWPPQRRHK 129 (442)
T ss_pred EEEeecCchhhcc
Confidence 8888887644443
No 314
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=81.42 E-value=4.4 Score=35.84 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=43.9
Q ss_pred eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCC------CeeeEEEEEcC
Q psy15955 282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGR------NELIGRILLAG 338 (475)
Q Consensus 282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~------d~~lG~~~i~l 338 (475)
....|.+...+.+|.|+|++...+|...-.+.-|.|++++.....+ ...+|-..+||
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL 116 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPL 116 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEee
Confidence 3457888888999999999999998777667789999998554322 25678777766
No 315
>COG2826 Tra8 Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
Probab=81.12 E-value=1.5 Score=41.51 Aligned_cols=74 Identities=27% Similarity=0.398 Sum_probs=61.1
Q ss_pred cccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhccc--cchHHHHHHHHHHhcCccCCCCC-CChhhhhc
Q psy15955 372 EMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNW--NNVDEELLNFSQSYNSTPHTTLG-VSPAELHL 445 (475)
Q Consensus 372 ~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~~--~~~~~~l~~~l~~y~~~~~~~~~-~sP~~l~~ 445 (475)
.+.++...+++.--+..||.|.-.|..|..||-|+.++-|-.. .-..+.|..+....|+.|...+| .||+|++.
T Consensus 235 ~~~~l~~~l~~~vyfcdp~apWQRGtnENtNgliRrf~PKgTdla~vt~~el~~i~~~lN~rPRK~Lg~ktp~E~f~ 311 (318)
T COG2826 235 RHSELEKRLGADVYFADPYASWQRGTNENTNGLIRRFLPKGTDLAAVTQEELAAIADLLNHRPRKCLGYKTPYEVFL 311 (318)
T ss_pred HHHHHHhhcCCceEecCCCCchhcccccccccHHHHhCCCCCchhhCCHHHHHHHHHHHhcCchhhhCCCCHHHHHH
Confidence 3444566778888889999999999999999999999887653 33567788888999999999997 89999975
No 316
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=74.99 E-value=8.2 Score=33.82 Aligned_cols=69 Identities=19% Similarity=0.377 Sum_probs=48.9
Q ss_pred CCcEEEEEEeCCCCceEEeeee--cCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeecccccc
Q psy15955 137 SDPYVKVALLPDKKHRLETKIK--RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212 (475)
Q Consensus 137 ~dpyv~v~l~~~~~~~~kT~v~--~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~ 212 (475)
..-|++|.+ +++...+|+.. ...+.-.|+|.|.+. +.. .-..|.++||.... ..+.+|+++.+|+-...
T Consensus 37 ~~~~ikl~~--N~k~V~~T~~~~l~~dF~v~f~~~f~v~---i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFF--NDKEVSRTRSRPLWSDFRVHFNEIFNVQ---ITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEE--CCEEEEeeeeEecCCCeEEeccCEEEEE---Eec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 457888888 45556666643 345556778888877 222 23579999999887 56789999999986653
No 317
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=73.46 E-value=23 Score=30.98 Aligned_cols=69 Identities=14% Similarity=0.334 Sum_probs=46.3
Q ss_pred ccceEEEEEEeCceeeeeeeccccc--CCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955 266 SDPYVKVWLQFGEKRIEKRKTQIFK--CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGS 342 (475)
Q Consensus 266 ~dpyv~v~l~~~~~~~~~~~T~~~~--~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~ 342 (475)
..-|+++++ +++.+ .+|+... ....-.|++.|.+.|.. . -..|.|.||.... ..+.+|+.+.+++....
T Consensus 37 ~~~~ikl~~--N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~--~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFF--NDKEV--SRTRSRPLWSDFRVHFNEIFNVQITR--W-PESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEE--CCEEE--EeeeeEecCCCeEEeccCEEEEEEec--C-CCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 456777744 55544 3454433 23334578988888742 1 2379999999876 56899999999986644
No 318
>KOG1329|consensus
Probab=72.62 E-value=6.3 Score=42.91 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=65.9
Q ss_pred CCcEEEEEEeCCCCceEEeeeecCC-CCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCC
Q psy15955 137 SDPYVKVALLPDKKHRLETKIKRRT-LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE 215 (475)
Q Consensus 137 ~dpyv~v~l~~~~~~~~kT~v~~~~-~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~ 215 (475)
.++|+.+.+. .....+|..+.+. .+|.|.+.|.. ..... ...+.+.|-+.+..+-...+|.+.+++..+..+.
T Consensus 138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~---~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~ 211 (887)
T KOG1329|consen 138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDI---GFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH 211 (887)
T ss_pred ccchheeeec--hhhhhchhhhhcccccchhhhhccc---ccccc-ccEEEEeecCCccccceeEEEEeccchhhhhccc
Confidence 4788888883 3344577777776 78999988753 34443 4678899988887775689999999999998888
Q ss_pred CcceeeccCCCCCC
Q psy15955 216 KPTFWKALKPPAKD 229 (475)
Q Consensus 216 ~~~~~~~L~~~~~~ 229 (475)
....|+++....+.
T Consensus 212 ~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 212 RIGGWFPILDNDGK 225 (887)
T ss_pred cccceeeeeccCCc
Confidence 88889988765543
No 319
>KOG0906|consensus
Probab=64.75 E-value=19 Score=37.95 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=37.1
Q ss_pred CeecceEEEeecccccc-cceEEEEEEeccCCCCCeeeEEEEEcCc
Q psy15955 295 PVFNESFSFNVPWEKIR-ECSLNVMVMDFDNIGRNELIGRILLAGK 339 (475)
Q Consensus 295 P~w~e~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d~~lG~~~i~l~ 339 (475)
-.|||-..+++...+|. ++.+.|++||.....+..++|..++.+.
T Consensus 77 ~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf 122 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLF 122 (843)
T ss_pred cchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEee
Confidence 45999988988777775 5679999999888777889999998663
No 320
>KOG0694|consensus
Probab=62.13 E-value=3.1 Score=43.90 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=62.5
Q ss_pred CCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccC-C
Q psy15955 136 TSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL-S 214 (475)
Q Consensus 136 ~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~-~ 214 (475)
..+||+.|.+. ..+...+.+...+..|.|+++|..+ +. ....+.|.|+.......+.+...+.+-.+++.. .
T Consensus 27 al~~y~~v~vk--~~~~~~~~~~~~~~~~~~~~~F~~~---v~--~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~ 99 (694)
T KOG0694|consen 27 ALQPYLAVELK--VKQGAENMTKVELRIPELRETFHVE---VV--AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLA 99 (694)
T ss_pred hhhhhheeccc--eeecccccCCCCCCCchhhhheeee---ee--cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHh
Confidence 45799888872 2233345567889999999999876 22 245788999987655555556666666655543 2
Q ss_pred CCcceeeccCCCCCCcccceeeeeeecC
Q psy15955 215 EKPTFWKALKPPAKDKCGELLTSLCYHP 242 (475)
Q Consensus 215 ~~~~~~~~L~~~~~~~~G~l~l~l~~~~ 242 (475)
.....|..+.+. |.+.+.+.+..
T Consensus 100 ~~~~~w~~~~~~-----g~~~~~~~~~~ 122 (694)
T KOG0694|consen 100 LEQRLWVLIEEL-----GTLLKPAALTG 122 (694)
T ss_pred hhhhhccccccc-----cceeeeecccC
Confidence 344678886543 77777666553
No 321
>KOG0904|consensus
Probab=61.42 E-value=40 Score=36.92 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=48.3
Q ss_pred ceeEEEEEEeeccCcccccCCCccc--eEEEEEEeCceeeee-eecccccCCCCCeecceEEEeecccccc-cceEEEEE
Q psy15955 244 NSVLTITLLKARNLKAKDINGKSDP--YVKVWLQFGEKRIEK-RKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMV 319 (475)
Q Consensus 244 ~~~L~v~v~~a~~L~~~~~~~~~dp--yv~v~l~~~~~~~~~-~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V 319 (475)
+..+++.++.+.++... ...|- ||++.+..++..... ..|.-+....+|.||+.++|+|...++. .+.|.|.|
T Consensus 342 ~~~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 44677777776665322 23344 445555555555544 5566666689999999999998766664 34577777
Q ss_pred Eec
Q psy15955 320 MDF 322 (475)
Q Consensus 320 ~d~ 322 (475)
+-.
T Consensus 419 ~~v 421 (1076)
T KOG0904|consen 419 YAV 421 (1076)
T ss_pred eEe
Confidence 654
No 322
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=58.25 E-value=52 Score=25.55 Aligned_cols=46 Identities=26% Similarity=0.269 Sum_probs=29.2
Q ss_pred ecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcC
Q psy15955 285 KTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAG 338 (475)
Q Consensus 285 ~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l 338 (475)
.|.- +...+..|++.|.|.+. ..+.|+|.||-.|. ..+-|-..+-|
T Consensus 24 qT~W-k~~s~q~WDQ~Fti~Ld----RsRELEI~VywrD~---RslCav~~lrL 69 (98)
T cd08687 24 QTQW-KPKSNQAWDQSFTLELE----RSRELEIAVYWRDW---RSLCAVKFLKL 69 (98)
T ss_pred eccc-cccccccccceeEEEee----cccEEEEEEEEecc---hhhhhheeeEh
Confidence 4443 33467889999998885 24579999986653 23344444433
No 323
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=56.47 E-value=1.4e+02 Score=26.08 Aligned_cols=86 Identities=21% Similarity=0.241 Sum_probs=54.3
Q ss_pred EEEEeeccCcccccCCCccceEEEEEEeCceee-----e-eeecccccC-----CCCCeecceEEEeeccccccc-ceEE
Q psy15955 249 ITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI-----E-KRKTQIFKC-----NLNPVFNESFSFNVPWEKIRE-CSLN 316 (475)
Q Consensus 249 v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-----~-~~~T~~~~~-----t~nP~w~e~f~f~v~~~~l~~-~~l~ 316 (475)
-.|..|.+.. ..+.||+..+..+..+. . ...|.+.+. ...-.||..|++......... ..|.
T Consensus 6 G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 6 GEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 3456666553 24678888775433221 1 234444432 234569988888765555444 5799
Q ss_pred EEEEeccCCCCCeeeEEEEEcCcC
Q psy15955 317 VMVMDFDNIGRNELIGRILLAGKN 340 (475)
Q Consensus 317 i~V~d~~~~~~d~~lG~~~i~l~~ 340 (475)
|+||..|..+++.+.|--.+.++.
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEeCC
Confidence 999999999999888766665543
No 324
>COG2801 Tra5 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=52.48 E-value=6 Score=35.56 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=60.1
Q ss_pred eeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhccccchHHHHHHHHHHhcCc-cCCCCC-C
Q psy15955 361 IVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNST-PHTTLG-V 438 (475)
Q Consensus 361 ~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~~~~~~~~l~~~l~~y~~~-~~~~~~-~ 438 (475)
.++++..+.+..+...+...++....+.+..|+.||..|++++. ............+..+...||.. +|..++ .
T Consensus 143 ~~d~g~~~~~~~~~~~~~~~~i~~~~~~~g~~~~n~~~e~~~~~----~~~~~~~~~~~~~~~~~~~yn~~r~h~~l~~~ 218 (232)
T COG2801 143 HSDRGSQYGSLAFREILRELGIKPSLSRKGLPQDNAKIERFFKT----LYKADLELEFESLDEVVRWYNNRRPHGALGGL 218 (232)
T ss_pred eccchhhhhHHHHHHHHHHcCCccccCCCCCccchhhhhhhhcc----cccchHHHHHHHHHHHHHHHcccChhhhcCCC
Confidence 56777777888889999999999999999999999999999722 00011134456666677778875 899885 5
Q ss_pred Chhhhhc
Q psy15955 439 SPAELHL 445 (475)
Q Consensus 439 sP~~l~~ 445 (475)
+|.+.-.
T Consensus 219 ~p~~~~~ 225 (232)
T COG2801 219 SPAEFRQ 225 (232)
T ss_pred CHHHHHH
Confidence 8877543
No 325
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=49.75 E-value=1.8e+02 Score=25.37 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=50.8
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEeC-------CCCc-eEEeeeecC-----CCCceeeeeEEeeccccccc-ccceEE
Q psy15955 121 RVISAKELPAKDMSGTSDPYVKVALLP-------DKKH-RLETKIKRR-----TLNPRWNETLYFEGFPIQKL-QSRVLH 186 (475)
Q Consensus 121 ~v~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~~-~~kT~v~~~-----~~nP~w~e~f~f~~~~~~~~-~~~~L~ 186 (475)
.|.+|.+.. ..+-||+..+.- .+.. ...|.+... +-.-.||.-|.+. +....+ ....|.
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~-~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLH-FKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEE-EEeCCCCCCceEE
Confidence 456676543 345788877632 1222 345554432 3346788776665 333333 246899
Q ss_pred EEEEeeCCCCCCccccceeecc
Q psy15955 187 LHVFDYDRFSRDDSIGEVFLPL 208 (475)
Q Consensus 187 ~~V~d~d~~~~~~~iG~~~i~l 208 (475)
|+||..|..+++.+.|...+.|
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEe
Confidence 9999999999999988766665
No 326
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=47.64 E-value=1.6e+02 Score=24.28 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=48.7
Q ss_pred eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324 (475)
Q Consensus 245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~ 324 (475)
..|.+.-+.-.+.|..+..+.+.||++|+- .+..+ ..+........-.=...+.+.++..-.-...+.|.+|+...
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~--~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~ 79 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYN--GGKKV--FSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRS 79 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEE--TTEEE--EETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECET
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEEC--CCccE--EEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCC
Confidence 345566566677777666778999999953 33322 12222111111111233444433221112358999999873
Q ss_pred -CCCCeeeEEEEEcCc
Q psy15955 325 -IGRNELIGRILLAGK 339 (475)
Q Consensus 325 -~~~d~~lG~~~i~l~ 339 (475)
...++.|.++.+...
T Consensus 80 ~~~~~~~~f~~~FnT~ 95 (134)
T PF10409_consen 80 SSMSKEKMFRFWFNTG 95 (134)
T ss_dssp TECCCEEEEEEEEEGG
T ss_pred cccccCeEEEEEEeee
Confidence 345677899888543
No 327
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=47.45 E-value=22 Score=28.68 Aligned_cols=59 Identities=17% Similarity=-0.018 Sum_probs=38.2
Q ss_pred cceEEEEEEeeCC---CCCCccccceeecccccc--------------CCCCcceeeccCCCCCCcccceeeeeee
Q psy15955 182 SRVLHLHVFDYDR---FSRDDSIGEVFLPLCQVD--------------LSEKPTFWKALKPPAKDKCGELLTSLCY 240 (475)
Q Consensus 182 ~~~L~~~V~d~d~---~~~~~~iG~~~i~l~~l~--------------~~~~~~~~~~L~~~~~~~~G~l~l~l~~ 240 (475)
...|.+.+++... .....+||.+.+++.+.. .......-|+|....+...|+|.+.+..
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRL 103 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRL 103 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEE
Confidence 4567777765432 345678999999988763 1112345677776666677777776654
No 328
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=42.78 E-value=1.5e+02 Score=24.43 Aligned_cols=89 Identities=12% Similarity=0.212 Sum_probs=44.3
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCcee-eeeEEeecccccccccceEEEEEEeeCC
Q psy15955 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRW-NETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w-~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
..|.++-+.-.++|..+..+.+.||++|+-. +.....+....... ... ...+.+. ++...+-..-+.|.+|+.+.
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~--~~~v~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~GDV~i~~~~~~~ 79 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNG--GKKVFSTSKSYEDP-KSYEQDSVIIE-LPKNLPLRGDVLIKFYHKRS 79 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEET--TEEEEETCCTCCCC-CEEETTCEEEE-EEEEEEEESEEEEEEEECET
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECC--CccEEEeccceecc-ccccceeEEEE-eCCCCeEeCCEEEEEEeCCC
Confidence 4566777777888877667778999999962 22222222211111 111 1223333 22222223457788888762
Q ss_pred -CCCCccccceeecc
Q psy15955 195 -FSRDDSIGEVFLPL 208 (475)
Q Consensus 195 -~~~~~~iG~~~i~l 208 (475)
...++.+.++.+.-
T Consensus 80 ~~~~~~~~f~~~FnT 94 (134)
T PF10409_consen 80 SSMSKEKMFRFWFNT 94 (134)
T ss_dssp TECCCEEEEEEEEEG
T ss_pred cccccCeEEEEEEee
Confidence 22334455544443
No 329
>KOG1329|consensus
Probab=42.32 E-value=24 Score=38.61 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=63.5
Q ss_pred CccceEEEEEEeCceeeeeeecccccCC-CCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955 265 KSDPYVKVWLQFGEKRIEKRKTQIFKCN-LNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343 (475)
Q Consensus 265 ~~dpyv~v~l~~~~~~~~~~~T~~~~~t-~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~ 343 (475)
+.++|+.+.+. .....+|....+. .+|.|.+.|..... .. ...+++.|-+.+..|-..++|.+.++...++.
T Consensus 137 ~~e~Ylt~~l~----~~~~~~t~~~~~f~e~s~~~f~~~~~~~--h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 137 TLENYLTVVLH----KARYRRTHVIYEFLENSRWSFSFDIGFA--HK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCS 209 (887)
T ss_pred hccchheeeec----hhhhhchhhhhcccccchhhhhcccccc--cc-ccEEEEeecCCccccceeEEEEeccchhhhhc
Confidence 36899999874 2233466666665 78999998655443 22 24688888888877767899999999888888
Q ss_pred CcccccccccccCCC
Q psy15955 344 ASETKHWQDMITKPR 358 (475)
Q Consensus 344 ~~~~~~w~~~~~~p~ 358 (475)
+.....|.+++...+
T Consensus 210 ~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 210 GHRIGGWFPILDNDG 224 (887)
T ss_pred cccccceeeeeccCC
Confidence 778888888775433
No 330
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=40.39 E-value=53 Score=26.35 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=30.1
Q ss_pred eeecccccCCCCCeecceEEEeeccccc-----ccceEEEEEEeccCCCCCeeeEEEEEcCc
Q psy15955 283 KRKTQIFKCNLNPVFNESFSFNVPWEKI-----RECSLNVMVMDFDNIGRNELIGRILLAGK 339 (475)
Q Consensus 283 ~~~T~~~~~t~nP~w~e~f~f~v~~~~l-----~~~~l~i~V~d~~~~~~d~~lG~~~i~l~ 339 (475)
.+.|.++. ..+|.+|-+-.|.|..+++ ....+.|+++..-. .....+|.+.+++.
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~ 71 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLR 71 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--S
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeech
Confidence 34677666 7999999998898876553 36789999988663 34689999999763
No 331
>KOG0906|consensus
Probab=39.71 E-value=33 Score=36.23 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=49.3
Q ss_pred CCCCcEEEEEEeCCCCce---EEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEeeCCCCCCccccceeecccc
Q psy15955 135 GTSDPYVKVALLPDKKHR---LETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQ 210 (475)
Q Consensus 135 ~~~dpyv~v~l~~~~~~~---~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~ 210 (475)
..+|.|++..+.+.+... .+|+.+.-...=.|||-..+. +...++ .+..|.|++||.+..++..|+|..++.+-.
T Consensus 45 ~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 45 TSSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhheeeeeccCCcccCCccccccccCCccchhhhhccc-cccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 456778777765433221 134432222223499988777 555555 357899999999887888999999988754
No 332
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=38.73 E-value=1.9e+02 Score=24.45 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=56.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecc-----c----ccccccceEEEE
Q psy15955 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF-----P----IQKLQSRVLHLH 188 (475)
Q Consensus 118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~-----~----~~~~~~~~L~~~ 188 (475)
|.|+-+.|-+.- ...+.|-|..|++.+ +..+|+.....+-=.|+|.|.|+.+ . .+.+....+.|+
T Consensus 4 L~i~aVTCPGv~---L~~~~~vyL~v~~lg---~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iE 77 (140)
T PF14909_consen 4 LEIHAVTCPGVW---LCDKGDVYLSVCILG---QYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIE 77 (140)
T ss_pred EEEEEEecCCeE---eCCCCCEEEEEEEcc---cEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEE
Confidence 444445443332 334568999999953 4667887776666677999988731 0 123445778899
Q ss_pred EEeeCCCCCCccccceeecccccc
Q psy15955 189 VFDYDRFSRDDSIGEVFLPLCQVD 212 (475)
Q Consensus 189 V~d~d~~~~~~~iG~~~i~l~~l~ 212 (475)
++.+.... .+.|+...-...++.
T Consensus 78 LiQl~~~~-g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 78 LIQLVPPA-GEILAYYEENTRDFL 100 (140)
T ss_pred EEEEeCCC-CcEEEEEeccccceE
Confidence 98876543 466777766666654
No 333
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=38.53 E-value=1.8e+02 Score=28.35 Aligned_cols=109 Identities=11% Similarity=0.130 Sum_probs=65.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCc--eeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNP--RWNETLYFEGFPIQKLQSRVLHLHVFDYDR 194 (475)
Q Consensus 117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP--~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~ 194 (475)
.|.|.|.+-.++... ...|+.+.. +....+|..+.-+..- .-.+.... ...+ +..+|++.||-..-
T Consensus 59 ~LLVeI~EI~~i~k~-----khiyIef~~---Gr~d~TT~~IpTsKK~RI~IqqRV~I---kIRQ-cDnTLkI~lfKKkL 126 (508)
T PTZ00447 59 YLLVKINEIFNINKY-----KHIYIIFST---DKYDFTTDEIPTNKKNRIHIDQRVDI---KIRQ-CDETLRVDLFTTKL 126 (508)
T ss_pred eEEEEehhhhccccc-----eeEEEEEEc---CceEEEccccccCcCceEEEeeeeee---eeee-cCceEEEEEEeccc
Confidence 467776665555432 356777776 4444555433322221 22232222 1222 45789999998774
Q ss_pred CCCCccccceeeccccc--cCCCCcceeeccCCCCCCcccceeeeee
Q psy15955 195 FSRDDSIGEVFLPLCQV--DLSEKPTFWKALKPPAKDKCGELLTSLC 239 (475)
Q Consensus 195 ~~~~~~iG~~~i~l~~l--~~~~~~~~~~~L~~~~~~~~G~l~l~l~ 239 (475)
. +..-||.+.+.+..= ...-....||-+ ...+...+.|.+++.
T Consensus 127 v-kk~hIgdI~InIn~dIIdk~FPKnkWy~c-~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 127 T-KKVHIGQIKIDINASVISKSFPKNEWFVC-FKDGQEICKVQMSFY 171 (508)
T ss_pred c-ceeEEEEEEecccHHHHhccCCccceEEE-ecCCceeeeEEEEeh
Confidence 4 457899999998652 333345789999 446778888888874
No 334
>PF13333 rve_2: Integrase core domain
Probab=32.92 E-value=56 Score=22.12 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=24.4
Q ss_pred hhhhHHHHHHhhhc-c---ccchHHHHHHHHHHhcCccCCCCCCChhhh
Q psy15955 399 ENMVGVVKRFLRKC-N---WNNVDEELLNFSQSYNSTPHTTLGVSPAEL 443 (475)
Q Consensus 399 er~~~~lk~~l~~~-~---~~~~~~~l~~~l~~y~~~~~~~~~~sP~~l 443 (475)
|.+.+.+|.-+-.. . .......+..+...||+..- .|.||.|-
T Consensus 1 Esff~~lK~E~~~~~~~~t~eel~~~I~~YI~~yN~~Rl--~~lsP~ey 47 (52)
T PF13333_consen 1 ESFFGTLKTEMLYRQKFKTREELKQAIDEYIDYYNNERL--KGLSPVEY 47 (52)
T ss_pred CcchHhhcchhcCCcccchHHHHHHHHHHHHHHhccCCC--CCcCHHHH
Confidence 34556665533211 1 24445666667777877652 29999873
No 335
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=32.85 E-value=3.1e+02 Score=23.37 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=47.3
Q ss_pred cCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCce-ee-eeeecccccCC-CC-CeecceEEEeecccccc-cceE
Q psy15955 241 HPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK-RI-EKRKTQIFKCN-LN-PVFNESFSFNVPWEKIR-ECSL 315 (475)
Q Consensus 241 ~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~-~~~~T~~~~~t-~n-P~w~e~f~f~v~~~~l~-~~~l 315 (475)
.+....|.|.|-+. +|.. ...-.|||+.|++.+..+ .+ ..+.|.+.... .| =.|+...+...+.+.+. ++.|
T Consensus 9 ~~g~t~l~v~Ieki-glkd--a~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai 85 (147)
T PF14186_consen 9 EPGMTYLSVFIEKI-GLKD--ASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAI 85 (147)
T ss_dssp -TT--EEEEEEEEE-E-TT--GGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EE
T ss_pred CCCCceEEEEEEEE-EECC--hHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEE
Confidence 34455666764443 3543 334579999999865433 22 24556655222 22 23666666666666664 4668
Q ss_pred EEEEEeccCCCCCe-eeEEEEEcCc
Q psy15955 316 NVMVMDFDNIGRNE-LIGRILLAGK 339 (475)
Q Consensus 316 ~i~V~d~~~~~~d~-~lG~~~i~l~ 339 (475)
.+++.|+....+.. ..+.+.+.++
T Consensus 86 ~fE~kH~K~kk~k~S~kcw~fme~d 110 (147)
T PF14186_consen 86 FFEFKHYKPKKKKTSTKCWAFMELD 110 (147)
T ss_dssp EEEEEEEETTTTCEEEEEEEEEEGG
T ss_pred EEEEEeeeccceeeeeeEEEEEEhh
Confidence 89999987654433 3455555443
No 336
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=31.96 E-value=2.9e+02 Score=27.87 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=39.9
Q ss_pred ceEEEEEEeeCC-----C-CCCccccceeeccccccCCCC----cceeeccCCCCC----CcccceeeeeeecCC
Q psy15955 183 RVLHLHVFDYDR-----F-SRDDSIGEVFLPLCQVDLSEK----PTFWKALKPPAK----DKCGELLTSLCYHPS 243 (475)
Q Consensus 183 ~~L~~~V~d~d~-----~-~~~~~iG~~~i~l~~l~~~~~----~~~~~~L~~~~~----~~~G~l~l~l~~~~~ 243 (475)
..|+|.||.-.. + ....+||.+.++|+---.... +..|..+-.... ....+|++.+..+|.
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 469999997432 1 355799999999973322111 257998855432 235788888877664
No 337
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=31.85 E-value=42 Score=33.82 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=29.9
Q ss_pred cccceeecccc-ccCCCCcceeeccCCCCCCcc--cceeeeeeec
Q psy15955 200 SIGEVFLPLCQ-VDLSEKPTFWKALKPPAKDKC--GELLTSLCYH 241 (475)
Q Consensus 200 ~iG~~~i~l~~-l~~~~~~~~~~~L~~~~~~~~--G~l~l~l~~~ 241 (475)
++|.+.||+.. +..+...+.|+++........ |.+ +.+.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEee
Confidence 48999999999 666677889999987654433 444 466554
No 338
>PF13358 DDE_3: DDE superfamily endonuclease
Probab=25.25 E-value=1.1e+02 Score=25.10 Aligned_cols=49 Identities=27% Similarity=0.502 Sum_probs=38.9
Q ss_pred eeeccCCCCcccceeec--ccceecccCCCCCCCCCchhhhhHHHHHHhhhc
Q psy15955 363 QWHRLKPDHEMQTFLQS--VGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC 412 (475)
Q Consensus 363 ~w~~L~~s~~f~~~~~~--~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~ 412 (475)
+..+.+.+...++++.. .++..+..++|.|.-| .+|..-+.+|..+.+.
T Consensus 87 DNa~~H~~~~~~~~l~~~~~~~~~~~~P~~sPdLN-piE~~w~~lk~~~~~~ 137 (146)
T PF13358_consen 87 DNASIHKSKKVQEWLEEHERGIELLFLPPYSPDLN-PIENVWGYLKRRIRRR 137 (146)
T ss_pred ccccccccccccceeeccccccccccccCcCCccC-HHHHHHHHHHHHHHhc
Confidence 33444455566666777 8899999999999999 7999999999998873
No 339
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=24.58 E-value=4.4e+02 Score=22.46 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=47.6
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc----eEEeeee--cCCCCceeeeeEEeecccccccc-cceEEE
Q psy15955 115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH----RLETKIK--RRTLNPRWNETLYFEGFPIQKLQ-SRVLHL 187 (475)
Q Consensus 115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~----~~kT~v~--~~~~nP~w~e~f~f~~~~~~~~~-~~~L~~ 187 (475)
...|.|.|-+.. |... ....|||+.|++.+..+. .+.|.+. +.+.-=.|+.....+ .+++.+. ...+-|
T Consensus 12 ~t~l~v~Iekig-lkda--~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lq-tple~lp~Gaai~f 87 (147)
T PF14186_consen 12 MTYLSVFIEKIG-LKDA--SQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQ-TPLEKLPKGAAIFF 87 (147)
T ss_dssp --EEEEEEEEEE--TTG--GG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-S-S-GGGS-TT-EEEE
T ss_pred CceEEEEEEEEE-ECCh--HHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEc-CCHHHCCCceEEEE
Confidence 345677755544 6543 345799999999754332 2445543 222234556666655 5555553 456888
Q ss_pred EEEeeCCCCCC-ccccceeeccccccCC
Q psy15955 188 HVFDYDRFSRD-DSIGEVFLPLCQVDLS 214 (475)
Q Consensus 188 ~V~d~d~~~~~-~~iG~~~i~l~~l~~~ 214 (475)
++.++..-.+. ...+.+.++++++..+
T Consensus 88 E~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 88 EFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 88887643322 2356666777777554
No 340
>KOG0241|consensus
Probab=21.77 E-value=2.9e+02 Score=31.10 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=76.2
Q ss_pred EEeecCCCCCCCC--CCCcEEEEEEeCCCCceEEeeeec------CCCCceeeeeEEeecccccccccceEEEE-EEeeC
Q psy15955 123 ISAKELPAKDMSG--TSDPYVKVALLPDKKHRLETKIKR------RTLNPRWNETLYFEGFPIQKLQSRVLHLH-VFDYD 193 (475)
Q Consensus 123 ~~a~~L~~~~~~~--~~dpyv~v~l~~~~~~~~kT~v~~------~~~nP~w~e~f~f~~~~~~~~~~~~L~~~-V~d~d 193 (475)
|.|.+|.+....| .+.|-+.|.-.+.+.+.+.-+-.. ..+--.|.|.+. +.... ...+.. .|+
T Consensus 694 IPaanL~~nrkrGa~vsEPaI~VrR~g~gsQiWt~ekLenkLiDMRd~Yqe~ke~~~----~~~~~--~~k~~DPFye-- 765 (1714)
T KOG0241|consen 694 IPAANLSANRKRGAFVSEPAIQVRRKGKGSQIWTIEKLENKLIDMRDLYQEWKEKVP----PAKRL--YGKRGDPFYE-- 765 (1714)
T ss_pred cchhcCCcccccCceeccceeEEEecCCCceeeeHHHhHhHHhhHHHHHHHHHhcCC----chhhh--ccccCCcccc--
Confidence 6677777654444 567888887755555544222111 122233444331 11110 001110 122
Q ss_pred CCCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeecC------------------------CceeEEE
Q psy15955 194 RFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHP------------------------SNSVLTI 249 (475)
Q Consensus 194 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~------------------------~~~~L~v 249 (475)
.-..+.+||.+.+=|+.|..+-......++....++..|.|++.+.-.. ..-..+|
T Consensus 766 sQEnhnLiGVANvFLE~LF~DvkL~Y~vPIIsQqGEVAGRLhVev~Rv~gq~~~~~~ggdev~e~~~~~~~~~~~ltCrV 845 (1714)
T KOG0241|consen 766 SQENHNLIGVANVFLEVLFHDVKLQYAVPIISQQGEVAGRLHVEVMRVTGQVPERVVGGDEVVESSGEIIHRVKKLTCRV 845 (1714)
T ss_pred ccccccchhhHHHHHHHHHhhheeccccceecccccccceeEEEEEEeccccchhhccccccccCCCccccccceEEEEE
Confidence 1234679999999888887666666777888888889999999875431 1225678
Q ss_pred EEEeeccCccc
Q psy15955 250 TLLKARNLKAK 260 (475)
Q Consensus 250 ~v~~a~~L~~~ 260 (475)
+|.+|.+||..
T Consensus 846 kIk~AtGLP~~ 856 (1714)
T KOG0241|consen 846 KIKEATGLPLN 856 (1714)
T ss_pred EEeeccCCccc
Confidence 99999999864
No 341
>KOG1032|consensus
Probab=20.86 E-value=1.5e+02 Score=31.63 Aligned_cols=84 Identities=13% Similarity=0.104 Sum_probs=54.3
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC-CCC
Q psy15955 119 ILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR-FSR 197 (475)
Q Consensus 119 ~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~-~~~ 197 (475)
....+.+.++......+.++||..+.. ..+.+...+...+.+|.|++.++|. ...+......+.+++.+. +++
T Consensus 100 ~~~~~~~~~~a~~~~n~~~~~~~l~~~---~~cal~reillQGrmyis~~~icF~---s~i~gw~~~~vIpf~eI~~ikk 173 (590)
T KOG1032|consen 100 SSALLAGVNLASEFLNGVPDPEILLTD---YSCALQREILLQGRMYISEEHICFN---SNIFGWETKVVIPFDEITLIKK 173 (590)
T ss_pred hhhhhcchhhhhhhhhcCCCcceeeee---cchhhccccccccccccccceeeec---ccccCccceeEEeeeeeeeeeh
Confidence 333455566666666668899988876 3334455688889999999999998 444555566677776654 334
Q ss_pred Cccccceeecc
Q psy15955 198 DDSIGEVFLPL 208 (475)
Q Consensus 198 ~~~iG~~~i~l 208 (475)
..-.|.+...+
T Consensus 174 ~~tag~fpn~i 184 (590)
T KOG1032|consen 174 TKTAGIFPNAI 184 (590)
T ss_pred hhhccCCCcce
Confidence 44455544333
No 342
>KOG2419|consensus
Probab=20.84 E-value=23 Score=37.16 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=46.1
Q ss_pred EEEEEEEeecCCCCC--C--CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEee
Q psy15955 118 LILRVISAKELPAKD--M--SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDY 192 (475)
Q Consensus 118 L~v~v~~a~~L~~~~--~--~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~ 192 (475)
....+|.|.++++.- . .-..++++...+ +.+.++|+....+.+|+|||. .|+ ..+. .+..|...|.++
T Consensus 282 ~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf---~~~~frt~~~~~~e~piyNe~-~~E---~~~Fqsn~~l~~kiv~~ 354 (975)
T KOG2419|consen 282 ALLTLIGAEMKYDIVEDVAKLFKDKWLAITSF---GEQTFRTEISDDTEKPIYNED-ERE---DSDFQSNRYLGNKIVGY 354 (975)
T ss_pred HHHHHhhhhcccchhhhhhhccCCCchheeec---chhhhhhhhhccccccccccc-ccc---cccchhhHHHhhhcccc
Confidence 334455555554221 0 113467777777 556789999999999999997 555 2222 234566667666
Q ss_pred CCCCCCc
Q psy15955 193 DRFSRDD 199 (475)
Q Consensus 193 d~~~~~~ 199 (475)
+.+.-++
T Consensus 355 ~~~~lnd 361 (975)
T KOG2419|consen 355 CELDLND 361 (975)
T ss_pred ccccccc
Confidence 6655555
No 343
>PF15532 Toxin_53: Putative toxin 53
Probab=20.06 E-value=4.5e+02 Score=20.80 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=39.7
Q ss_pred EEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC------CCCceEEeeeecCCCCceeeee
Q psy15955 107 FSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP------DKKHRLETKIKRRTLNPRWNET 169 (475)
Q Consensus 107 ~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~------~~~~~~kT~v~~~~~nP~w~e~ 169 (475)
+...+.......+|+|+.+.--.+...++..-+-++|+... .....+.+.+.+ ..||.||+.
T Consensus 25 ~k~kW~~~g~tyrvRvH~~Dp~ap~Gsnaa~G~IyRI~qg~G~~y~d~~g~~~h~s~l~-~~sP~yn~~ 92 (102)
T PF15532_consen 25 FKFKWTDGGKTYRVRVHPADPTAPAGSNAANGWIYRISQGSGWEYMDPDGKWHHESVLK-PNSPNYNED 92 (102)
T ss_pred ceEEeecCCceEEEEecCCCCCCCCCCcccCCCEEEEEeccCceEecCCCCeeeccccc-cCCCCcChh
Confidence 33444445667888888887666666667777888888321 122345555555 778999875
Done!