RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15955
(475 letters)
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 347 bits (892), Expect = e-118
Identities = 118/285 (41%), Positives = 173/285 (60%), Gaps = 6/285 (2%)
Query: 97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETK 156
E G+I F+L Y + + L++R++ A +LPAKD +G SDPYVK+ LLPD+K + +TK
Sbjct: 1 EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 60
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP--LCQVDLS 214
+ R+TLNP +NET F P+ +L R LH V+D+DRFSR D IG+V L L +
Sbjct: 61 VHRKTLNPIFNETFQFSV-PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP 119
Query: 215 EKPTFWKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKV 272
W+ + +K GEL SLCY P+ +LT+T++KA NLKA D+ G SDPYVK
Sbjct: 120 PDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKA 179
Query: 273 WLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
L +R++KRKT I K LNP +NE+ F+V E + L++ V+D+D IG NE+IG
Sbjct: 180 SLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 239
Query: 333 RILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
+ G + +HW +M+ PR+ + WH+L + + +F
Sbjct: 240 VCRV-GPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSSFT 283
Score = 127 bits (320), Expect = 1e-33
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 94 DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--H 151
+ ++G+++FSL Y L + +I A L A D++G SDPYVK +L+ + +
Sbjct: 130 EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK 189
Query: 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
+ +T IK+ TLNP +NE L F+ + +++ L + V DYD ++ IG +
Sbjct: 190 KRKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 248
Query: 212 DLSEKPTFWKALKPPAK 228
D + + + L P K
Sbjct: 249 DPHGREHWAEMLANPRK 265
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 346 bits (889), Expect = e-118
Identities = 131/283 (46%), Positives = 189/283 (66%), Gaps = 6/283 (2%)
Query: 99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIK 158
SE +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+
Sbjct: 2 SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH 61
Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT 218
R+TLNP +NE F+ P +L + L + V+D+DRFS+ D IGE +P+ VD
Sbjct: 62 RKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 120
Query: 219 FWKALKPPAK---DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQ 275
W+ L+ K +K G++ SL Y P+ LT+ +L+A+NLK D+ G SDPYVK+ L
Sbjct: 121 EWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 180
Query: 276 FGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRIL 335
KR++K+KT I K LNP +NESFSF VP+E+I++ + V V+D+D IG+N+ IG++
Sbjct: 181 QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 240
Query: 336 LAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQ 378
+ G N +G +E +HW DM+ PR+ I QWH L+ + E+ L
Sbjct: 241 V-GYNSTG-AELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLA 281
Score = 136 bits (344), Expect = 5e-37
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 227 AKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKT 286
+K G+L SL Y N+ L + +++A L A D+ G SDPYVKV+L +K+ K +T
Sbjct: 1 GSEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFET 58
Query: 287 QIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASE 346
++ + LNPVFNE F+F VP+ ++ +L + V DFD ++++IG +
Sbjct: 59 KVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV 118
Query: 347 TKHWQDMITKPRQTIVQWHRLKPDHEMQ 374
T+ W+D+ + ++ + +
Sbjct: 119 TEEWRDLQSAEKEEQEKLGDICFSLRYV 146
Score = 123 bits (310), Expect = 3e-32
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 89 VDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD 148
D+ E E +G I FSL Y L + ++ AK L D+ G SDPYVK+ L+ +
Sbjct: 123 RDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN 182
Query: 149 KK--HRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
K + +T IK+ TLNP +NE+ FE P +++Q + + V DYD+ ++D+IG+VF+
Sbjct: 183 GKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241
Query: 207 PLC 209
Sbjct: 242 GYN 244
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 197 bits (502), Expect = 7e-62
Identities = 80/137 (58%), Positives = 105/137 (76%)
Query: 94 DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL 153
++ EN+G+I FS+ Y+F STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+L
Sbjct: 4 GSSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKL 63
Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL 213
ETK+KR+ LNP WNET FEGFP +K+ R+L+L V DYDRFSR+D IGEV +PL +VDL
Sbjct: 64 ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123
Query: 214 SEKPTFWKALKPPAKDK 230
++ TFWK LKP
Sbjct: 124 TQMQTFWKDLKPSGPSS 140
Score = 130 bits (330), Expect = 1e-36
Identities = 45/137 (32%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 225 PPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKR 284
+++ G + S+ Y+ S LT+ ++KA+ L AKD +G SDP+VK++L +K K
Sbjct: 6 SGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKH--KL 63
Query: 285 KTQIFKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343
+T++ + NLNP +NE+F F P+EK+ + L + V+D+D RN+ IG + +
Sbjct: 64 ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123
Query: 344 ASETKHWQDMITKPRQT 360
W+D+ KP
Sbjct: 124 TQMQTFWKDL--KPSGP 138
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 193 bits (492), Expect = 4e-60
Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
+K G++ SL Y P+ LT+ +L+A+NLK D+ G SDPYVK+ L KR++K+KT I
Sbjct: 9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 68
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
K LNP +NESFSF VP+E+I++ + V V+D+D IG+N+ IG++ + G N +G +E +
Sbjct: 69 KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-GYNSTG-AELR 126
Query: 349 HWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
HW DM+ PR+ I QWH L+ + E+ L
Sbjct: 127 HWSDMLANPRRPIAQWHTLQVEEEVDAML 155
Score = 132 bits (333), Expect = 7e-37
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HR 152
E +G I FSL Y L + ++ AK L D+ G SDPYVK+ L+ + K +
Sbjct: 4 GGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKK 63
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
+T IK+ TLNP +NE+ FE P +++Q + + V DYD+ ++D+IG+VF+
Sbjct: 64 KKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG 122
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 191 bits (487), Expect = 1e-59
Identities = 78/138 (56%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + +KR+EK+KT K
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW 350
NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+ SG E KHW
Sbjct: 62 RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS--WKSGPGEVKHW 119
Query: 351 QDMITKPRQTIVQWHRLK 368
+DMI +PRQ + QWH+LK
Sbjct: 120 KDMIARPRQPVAQWHQLK 137
Score = 133 bits (336), Expect = 2e-37
Identities = 42/111 (37%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIK 158
+ G++ SL Y+ +++I+ +I A+ L A D+ GTSDPYVKV L+ K + +T K
Sbjct: 1 SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTK 60
Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLC 209
+R LNP +NE+ F+ P +KL+ + + V D D+ SR+D IG+++L
Sbjct: 61 KRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 191 bits (488), Expect = 2e-59
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
++ G++L SL Y L + +++ +L A D NG SDP+VK+WL+ + K KTQI
Sbjct: 21 EERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQI 80
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
K LNP FNE F +++ + + SL++ V D+D N+ IG L G + G K
Sbjct: 81 KKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKG-ERLK 138
Query: 349 HWQDMITKPRQTIVQWHRLKPDHEM 373
HW + + + I +WH+L+ ++ +
Sbjct: 139 HWYECLKNKDKKIERWHQLQNENHV 163
Score = 139 bits (353), Expect = 1e-39
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Query: 82 QSRSVSLV-DMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPY 140
+R ++L + ++ E G+I SL Y LI+ +I L A D +G SDP+
Sbjct: 2 SARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPF 61
Query: 141 VKVALLPD--KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRD 198
VK+ L PD KK + +T+IK++TLNP +NE +++ L + L + V+DYD +
Sbjct: 62 VKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSN 120
Query: 199 DSIGEVFLPL 208
D IG L +
Sbjct: 121 DYIGGCQLGI 130
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 190 bits (484), Expect = 5e-59
Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
GELL SLCY + + LT+ +LKAR+L D++G SDPYVKV L +KRI K+KT + KC
Sbjct: 17 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
N VFNE F F++P E + E S+ +V+D + RNE+IGR++L G G S HW+
Sbjct: 77 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL-GATAEG-SGGGHWK 134
Query: 352 DMITKPRQTIVQWHRL 367
++ PR+ I +WH L
Sbjct: 135 EICDFPRRQIAKWHML 150
Score = 133 bits (336), Expect = 2e-37
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 96 TEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRL 153
G++ SL Y +TL + V+ A+ LP D+SG SDPYVKV L KK +
Sbjct: 10 GGIPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKK 69
Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLC 209
+T +K+ T N +NE F+ P + L+ + V D +R SR++ IG + L
Sbjct: 70 KTHVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 124
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 185 bits (472), Expect = 2e-57
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 90 DMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD- 148
+ +++ + +G + FSL YD DNS L +I AK L D +G +DPYVK+ LLP
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGA 62
Query: 149 -KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP 207
K ++L TK R T NP WNETL + G + +Q + L + V D D+F ++ IGE
Sbjct: 63 SKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122
Query: 208 LCQVDLSEKPTFWKALK 224
L ++ +++ F L+
Sbjct: 123 LKKLKANQRKNFNICLE 139
Score = 132 bits (333), Expect = 5e-37
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
G L SL Y NS L T+++A+ LK D NG +DPYVK+ L G + K +T+
Sbjct: 13 TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKT 72
Query: 289 FKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASET 347
+ NPV+NE+ + + E ++ +L + V D D G NE IG + K
Sbjct: 73 LRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRK 132
Query: 348 KHWQD 352
Sbjct: 133 NFNIC 137
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 184 bits (470), Expect = 6e-57
Identities = 64/142 (45%), Positives = 92/142 (64%), Gaps = 3/142 (2%)
Query: 87 SLVDMYIDNTEP--SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVA 144
++D ++ EP E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV
Sbjct: 11 GILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVF 70
Query: 145 LLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEV 204
LLPDKK + ETK+ R+TLNP +NE F+ P +L + L + V+D+DRFS+ D IGE
Sbjct: 71 LLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEF 129
Query: 205 FLPLCQVDLSEKPTFWKALKPP 226
+P+ VD W+ L+
Sbjct: 130 KVPMNTVDFGHVTEEWRDLQSA 151
Score = 141 bits (357), Expect = 2e-40
Identities = 46/137 (33%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 217 PTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQF 276
+ + +P ++K G+L SL Y N+ L + +++A L A D+ G SDPYVKV+L
Sbjct: 14 DSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP 73
Query: 277 GEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
+K+ K +T++ + LNPVFNE F+F VP+ ++ +L + V DFD ++++IG +
Sbjct: 74 DKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131
Query: 337 AGKNGSGASETKHWQDM 353
T+ W+D+
Sbjct: 132 PMNTVDFGHVTEEWRDL 148
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 183 bits (466), Expect = 2e-56
Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Query: 94 DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL 153
E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK +
Sbjct: 12 ILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF 71
Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL 213
ETK+ R+TLNP +NE F+ P +L + L + V+D+DRFS+ D IGE +P+ VD
Sbjct: 72 ETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130
Query: 214 SEKPTFWKALK 224
W+ L+
Sbjct: 131 GHVTEEWRDLQ 141
Score = 140 bits (354), Expect = 4e-40
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
+K G+L SL Y N+ L + +++A L A D+ G SDPYVKV+L +K+ K +T++
Sbjct: 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKV 75
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
+ LNPVFNE F+F VP+ ++ +L + V DFD ++++IG + T+
Sbjct: 76 HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 135
Query: 349 HWQDM 353
W+D+
Sbjct: 136 EWRDL 140
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 182 bits (463), Expect = 5e-56
Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 8/143 (5%)
Query: 94 DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPA-------KDMSGTSDPYVKVALL 146
++ +G +HFS +YD ++ L +RVI A++LP + S+PYVK+ LL
Sbjct: 4 GSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLL 63
Query: 147 PDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
PD+K+ +T +KR+T P + E FE P + Q R L L V D+D+FSR IG+V +
Sbjct: 64 PDQKNSKQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSV 122
Query: 207 PLCQVDLSEKPTFWKALKPPAKD 229
PLC+VDL + +WKAL P
Sbjct: 123 PLCEVDLVKGGHWWKALIPSGPS 145
Score = 126 bits (319), Expect = 5e-35
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 225 PPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKA-------KDINGKSDPYVKVWLQFG 277
+K + G L S Y ++ LT+ +++AR+L + S+PYVK+ L
Sbjct: 6 SGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD 65
Query: 278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
+K ++T + + PVF E ++F +P+ + + +L + V+DFD R+ +IG++ +
Sbjct: 66 QKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVP 123
Query: 338 GKNGSGASETKHWQDMITKPRQT 360
W+ + P
Sbjct: 124 LCEVDLVKGGHWWKAL--IPSGP 144
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 179 bits (456), Expect = 4e-55
Identities = 53/133 (39%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 96 TEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSG-TSDPYVKVALLPDKKHRLE 154
+ S +G + FSLEY+F+ ++ + A+ LPA D TSDPY+K+ +LP+KKH+++
Sbjct: 2 SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVK 61
Query: 155 TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214
T++ R+TL+P ++ET F G P ++Q LH + +DRFSRDD IGEV +PL ++LS
Sbjct: 62 TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121
Query: 215 -EKPTFWKALKPP 226
K + +
Sbjct: 122 EGKMLMNREIISG 134
Score = 130 bits (328), Expect = 2e-36
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 7/133 (5%)
Query: 230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGK-SDPYVKVWLQFGEKRIEKRKTQI 288
G L SL Y+ + + +AR L A D SDPY+K+ + +K K KT++
Sbjct: 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRV 64
Query: 289 FKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIG--RILLAGKNGSGAS 345
+ L+P F+E+F+F +P+ +I+E +L+ ++ FD R+++IG I L+G S
Sbjct: 65 LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE-G 123
Query: 346 ETKHWQDMITKPR 358
+ +++I+ P
Sbjct: 124 KMLMNREIISGPS 136
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 172 bits (437), Expect = 2e-52
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
Query: 96 TEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD-KKHRLE 154
+ ++H+ L+YD + L + + A + G D YV+ ++ +
Sbjct: 6 SGSWNQAPKLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQ 62
Query: 155 TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214
T +K+R L+ W E L ++L + L L + DRFSR GE+ L L +
Sbjct: 63 TALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121
Query: 215 EKPTFWKALKPPAKD 229
W LK
Sbjct: 122 LGAAQWGELKTSGPS 136
Score = 131 bits (332), Expect = 6e-37
Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
++ +L L Y + L +T L+A + +G D YV+ + + +T +
Sbjct: 10 NQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGS-VEAQTAL 65
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
K L+ + E + E++ +L + + D R+ + G + L S
Sbjct: 66 KKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA 125
Query: 349 HWQDMITKPRQT 360
W ++ T +
Sbjct: 126 QWGELKTSGPSS 137
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 169 bits (431), Expect = 2e-51
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 13/137 (9%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK-----------KH 151
G+I + YD N LI+ ++ A+ L +D +G SDP+VKV LLP + ++
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
+ TK +++LNP WN+T+ ++ +++L + L + V+DYDRFS +D +GEV + L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 212 DLSEKPTFWKALKPPAK 228
+ W LK +
Sbjct: 125 SHLDNTPRWYPLKEQTE 141
Score = 121 bits (306), Expect = 3e-33
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE--------- 282
GE+ + Y N L I +L+ARNL +D NG SDP+VKV+L G ++
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 283 KRKTQIFKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG 341
KR+T+ + +LNP +N++ + ++ E++ + +L V V D+D N+ +G +L+ +
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 342 SGASETKHW 350
S T W
Sbjct: 125 SHLDNTPRW 133
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 169 bits (430), Expect = 3e-51
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLE 154
+ GQ+ L +D LI+ ++ AK+LP+++ +PYVK+ LPD+ K++
Sbjct: 2 SSGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRR 61
Query: 155 TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS--RDDSIGEVFLPLCQVD 212
TK ++TL P+WN+T + ++ + R+L + ++D R + +GE+ + L
Sbjct: 62 TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 121
Query: 213 LSEKPTFWKALKPPAK 228
L ++P W L+
Sbjct: 122 LDDEPH-WYKLQTHDS 136
Score = 133 bits (338), Expect = 1e-37
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
G+L L + L +T+L A++L +++ +PYVK++ KR+T+
Sbjct: 5 SSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT 64
Query: 289 FKCNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGAS 345
K L P +N++F ++ V + RE L + + D + +E +G IL+ +
Sbjct: 65 VKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILI-ELETALLD 123
Query: 346 ETKHWQDMITKPR 358
+ HW + T
Sbjct: 124 DEPHWYKLQTHDS 136
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 168 bits (428), Expect = 9e-51
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKK--HRLETKIKR 159
G+I FSL+Y+ +L++ V +L D + S+PYVK LLPDK + +T IKR
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
T+NP ++ETL +E P L R L V+ + RF R+ +GE + + L +K
Sbjct: 70 DTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDH 128
Query: 220 WKALKPPAKDK 230
L +
Sbjct: 129 CLPLHGKISAE 139
Score = 138 bits (350), Expect = 2e-39
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 4/141 (2%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRKTQ 287
G + SL Y L + + + L D +S+PYVK +L + R KRKT
Sbjct: 7 FVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTS 66
Query: 288 IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASET 347
I + +NP+++E+ + +P + + +L V GRN +G + + +
Sbjct: 67 IKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKL 126
Query: 348 KHW---QDMITKPRQTIVQWH 365
H I+ + H
Sbjct: 127 DHCLPLHGKISAESEGHHHHH 147
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 165 bits (420), Expect = 8e-50
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETK 156
G + S+ Y N TL + V+ K+L +D +PYVK LLPD K + +TK
Sbjct: 5 HHGSGAVKLSVSYR--NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTK 61
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
I R+T NP +NE L + G+ + L+ R L L V + + +G + LPL +LS++
Sbjct: 62 ISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKE 121
Query: 217 PTFWKALKPP 226
W L
Sbjct: 122 TVKWYQLTAA 131
Score = 114 bits (287), Expect = 1e-30
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
G + S+ Y N L I ++ ++L +D +PYVK +L + KRKT+I
Sbjct: 6 HGSGAVKLSVSYR--NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKI 62
Query: 289 FKCNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASET 347
+ NP FNE ++ E +R+ L + V+ +++ N +G I L K+ + + ET
Sbjct: 63 SRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKET 122
Query: 348 KHWQDM 353
W +
Sbjct: 123 VKWYQL 128
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 164 bits (418), Expect = 1e-49
Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRR 160
GQ+ L +D LI+ ++ AK+LP+++ +PYVK+ LPD+ K++ TK ++
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS--RDDSIGEVFLPLCQVDLSEKPT 218
TL P+WN+T + ++ + R+L + ++D R + +GE+ + L L ++P
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
Query: 219 FWKALK 224
W L+
Sbjct: 125 -WYKLQ 129
Score = 125 bits (316), Expect = 8e-35
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
G+L L + L +T+L A++L +++ +PYVK++ KR+T+ K
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 292 NLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGASETK 348
L P +N++F ++ V + RE L + + D + +E +G IL+
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILI------------ 112
Query: 349 HWQDMITKPRQTIVQWHRLK 368
++ T W++L+
Sbjct: 113 ---ELETALLDDEPHWYKLQ 129
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 164 bits (418), Expect = 2e-49
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 96 TEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RL 153
+GQI ++ + + LI+ V + + L A G SDPYV++ LLPDK+ R
Sbjct: 4 GSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRR 62
Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDS--IGEVFLPLCQV 211
+T + ++TLNP ++++ F + ++Q R L + V + F D +G+V + L
Sbjct: 63 KTHVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121
Query: 212 DLSEKPTFWKALKPPAKDKCG 232
+L++ T W L + G
Sbjct: 122 ELAKGWTQWYDLTEDSGPSSG 142
Score = 139 bits (351), Expect = 1e-39
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 224 KPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEK 283
+ G++ ++ + + L + + RNL A +G SDPYV+++L ++R +
Sbjct: 3 SGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGR 61
Query: 284 RKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNE--LIGRILLAGKNG 341
RKT + K LNPVF++SF F+V +++ +L+V V + + L+G++L+A +
Sbjct: 62 RKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121
Query: 342 SGASETKHWQDMITKP 357
A W D+
Sbjct: 122 ELAKGWTQWYDLTEDS 137
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 160 bits (407), Expect = 1e-47
Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 99 SENVGQIHFSLEYDFDNS-TLILRVISAKELPAKDMSGTSDPYVKVALLPDKK---HRLE 154
F L D +NS + +RVI+ L KD+ G SDPYV+V L ++
Sbjct: 2 MATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQ 61
Query: 155 TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214
TK +++LNP+WNE + F P Q L VFD +R +RDD +G+V +PL +
Sbjct: 62 TKTIKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTE 117
Query: 215 EKPTF------WKALKPPAKDK--CGELLTSLCYHP 242
L P + G L + Y P
Sbjct: 118 NPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153
Score = 120 bits (302), Expect = 2e-32
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 230 KCGELLTSLCYHPSNS-VLTITLLKARNLKAKDINGKSDPYVKVWL-QFGEKRIEKRKTQ 287
C + L NS ++ + ++ L KDI G SDPYV+V L + +T+
Sbjct: 4 TCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTK 63
Query: 288 IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA----GKNGSG 343
K +LNP +NE F V ++ L V D + + R++ +G++ +
Sbjct: 64 TIKKSLNPKWNEEILFRVH---PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120
Query: 344 ASETKHWQDMITKPRQ 359
++D + PR
Sbjct: 121 LERPYTFKDFVLHPRS 136
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 158 bits (400), Expect = 2e-46
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 111 YDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP---DKKHRLETKIKRRTLNPRWN 167
++ D + ++VI+ L KD+ G SDPYV+V L ++TK +++LNP+WN
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 168 ETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF------WK 221
E + F P Q + VFD +R +RDD +G+V +PL +
Sbjct: 63 EEILFRVLP----QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118
Query: 222 ALKPPAKDK--CGELLTSLCYHPSNSVLTITLLKARNLK 258
L P + G L + Y P N +A L+
Sbjct: 119 VLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELE 157
Score = 112 bits (281), Expect = 3e-29
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 240 YHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWL-QFGEKRIEKRKTQIFKCNLNPVFN 298
++ V+ + ++ L KDI G SDPYV+V L + +T+ K +LNP +N
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 299 ESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA----GKNGSGASETKHWQDMI 354
E F V + + V D + + R++ +G++ + ++D +
Sbjct: 63 EEILFRVL---PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119
Query: 355 TKPR 358
PR
Sbjct: 120 LHPR 123
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 157 bits (398), Expect = 2e-46
Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 5/151 (3%)
Query: 77 SSAFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGT 136
S+ +Q S + + + +I +L+YD N + +I L A
Sbjct: 4 GSSGVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQD 63
Query: 137 SDPYVKVALLPDKK---HRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD 193
++VA+LP + T+ + +NE + L + L + V D
Sbjct: 64 QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV-SMSYPALHQKTLRVDVCTTD 122
Query: 194 RFSRDDSIGEVFLPLCQVDLS-EKPTFWKAL 223
R ++ +G + L +V S E+ T W L
Sbjct: 123 RSHLEECLGGAQISLAEVCRSGERSTRWYNL 153
Score = 129 bits (325), Expect = 9e-36
Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKR-KTQIF 289
+ +L Y N I +++ NL A ++V + + +T+
Sbjct: 29 ATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPL 88
Query: 290 KCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG--RILLAGKNGSGASET 347
+ VFNE F ++ + + + +L V V D E +G +I LA SG +
Sbjct: 89 DASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG-ERS 147
Query: 348 KHWQDMI 354
W +++
Sbjct: 148 TRWYNLL 154
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 151 bits (384), Expect = 2e-44
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK 156
+E G+I+ + + L + V AK L D +G SDPYVK+ L+PD K+ + +TK
Sbjct: 1 TEKRGRIYLK--AEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 58
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
R TLNP+WNE+ F+ P + R L + ++D+DR +R+D +G + + ++
Sbjct: 59 TIRSTLNPQWNESFTFKLKP--SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPA 116
Query: 217 PTFWKALKPPAKDK 230
W L + +
Sbjct: 117 SG-WYKLLNQEEGE 129
Score = 135 bits (343), Expect = 1e-38
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
+K G + L ++ L +T+ A+NL D NG SDPYVK+ L K K+KT+
Sbjct: 2 EKRGRI--YLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKT 59
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
+ LNP +NESF+F + ++ L+V + D+D RN+ +G +
Sbjct: 60 IRSTLNPQWNESFTFKLKPS-DKDRRLSVEIWDWDRTTRNDFMGSLSF------------ 106
Query: 349 HWQDMITKPRQTIVQWHRLKPDHE 372
+ + W++L E
Sbjct: 107 ---GVSELMKMPASGWYKLLNQEE 127
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 150 bits (381), Expect = 5e-44
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HR 152
+ E G+I+ D LI+ V AK L D +G SDPYVK+ L+PD K +
Sbjct: 12 ILDSMERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESK 69
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
+TK + +LNP WNET F+ + R L + ++D+D SR+D +G + + ++
Sbjct: 70 QKTKTIKCSLNPEWNETFRFQLKE--SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 127
Query: 213 LSEKPTFWKALKPPAKDK 230
+ W L + +
Sbjct: 128 KAGVDG-WFKLLSQEEGE 144
Score = 136 bits (345), Expect = 9e-39
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
++ G + VL + + A+NL D NG SDPYVK+ L K K+KT+
Sbjct: 17 ERRGRIYIQAHIDRE--VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKT 74
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
KC+LNP +NE+F F + E ++ L+V + D+D RN+ +G + +
Sbjct: 75 IKCSLNPEWNETFRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK-AGVD 132
Query: 349 HWQDMITK 356
W ++++
Sbjct: 133 GWFKLLSQ 140
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 147 bits (372), Expect = 2e-42
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKK--H 151
T + +G I +E L + VI A+ L K S T PYVKV LL +
Sbjct: 11 QTLATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIA 68
Query: 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQ 210
+ +T+I R+TL+P + ++L F+ P Q +VL + V+ DY R +G + L +
Sbjct: 69 KKKTRIARKTLDPLYQQSLVFDESP----QGKVLQVIVWGDYGRMDHKCFMGVAQILLEE 124
Query: 211 VDLSEKPTFWKALKPP 226
+DLS W L PP
Sbjct: 125 LDLSSMVIGWYKLFPP 140
Score = 122 bits (309), Expect = 3e-33
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 25/151 (16%)
Query: 227 AKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRK 285
A G++ + L + +++AR+L K PYVKV+L I K+K
Sbjct: 14 ATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKK 71
Query: 286 TQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV-MDFDNIGRNELIG--RILLAGKNGS 342
T+I + L+P++ +S F+ + L V+V D+ + +G +ILL +
Sbjct: 72 TRIARKTLDPLYQQSLVFDES---PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD-- 126
Query: 343 GASETKHWQDMITKPRQTIVQWHRLKPDHEM 373
++ W++L P +
Sbjct: 127 --------------LSSMVIGWYKLFPPSSL 143
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 137 bits (348), Expect = 3e-39
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
L + V SA +P G DP V V +KK +TK LNP WNE L F+
Sbjct: 8 MLRVIVESASNIPKTK-FGKPDPIVSVIFKDEKK---KTKKVDNELNPVWNEILEFDLRG 63
Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW----KALKPPAKDKCG 232
I S L + V D++ ++ IG + L + + + L +D
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGA 123
Query: 233 ELLTSLCYHP 242
+ + Y P
Sbjct: 124 TIDLVIGYDP 133
Score = 99.8 bits (249), Expect = 3e-25
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
+L + + A N+ K GK DP V V + EK+KT+ LNPV+NE F++
Sbjct: 8 MLRVIVESASNI-PKTKFGKPDPIVSVIF-----KDEKKKTKKVDNELNPVWNEILEFDL 61
Query: 306 PWEKIRECS-LNVMVMDFDNIGRNELIGRILL 336
+ S L ++V DF+ IG+N+LIG +
Sbjct: 62 RGIPLDFSSSLGIIVKDFETIGQNKLIGTATV 93
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 135 bits (343), Expect = 2e-38
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 7/147 (4%)
Query: 92 YIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--K 149
+ + + G L D + L+L +I K L +K GT DPYVK++L+P+ +
Sbjct: 3 HHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSR 61
Query: 150 KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR-DDSIGEVFLPL 208
+T+ +P ++E +F + + L + V++ SR IG + +
Sbjct: 62 LRHQKTQTVPDCRDPAFHEHFFFPVQE--EDDQKRLLVTVWNRASQSRQSGLIGCMSFGV 119
Query: 209 CQVDLSEKPTF-WKALKPPAKDKCGEL 234
+ +K W L + L
Sbjct: 120 KSLLTPDKEISGWYYLLGEHLGRTKHL 146
Score = 135 bits (341), Expect = 4e-38
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 226 PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRK 285
+ G L + VL + +++ + L +K G DPYVK+ L + R+ +K
Sbjct: 8 HSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQK 66
Query: 286 TQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGR-NELIGRILLAGKNGSGA 344
TQ +P F+E F F V E ++ L V V + + R + LIG + K
Sbjct: 67 TQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSFGVK----- 120
Query: 345 SETKHWQDMITKPRQTIVQWHRLKPDHE 372
+ P + I W+ L +H
Sbjct: 121 --------SLLTPDKEISGWYYLLGEHL 140
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 131 bits (332), Expect = 6e-37
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
TL + ++SAK L D DPYV++ + + P WNET F
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFTVSE 68
Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLT 236
+ L +FD D + DD++GE +PL V + ++ GE+
Sbjct: 69 ----GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWV 124
Query: 237 SLCYHPSN 244
+L + PS
Sbjct: 125 ALSFKPSG 132
Score = 99.7 bits (249), Expect = 3e-25
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
L + L+ A+ L+ D DPYV++ + +++ P +NE+F F V
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTV 66
Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGR 333
L + D D ++ +G
Sbjct: 67 S---EGTTELKAKIFDKDVGTEDDAVGE 91
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 128 bits (325), Expect = 5e-36
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
L ++V+ A +L A D SG SDP+ + L D+ L+T + LNP WN+ F
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELL- 235
I VL + VFD D D +G+V +PL + + + K + G +
Sbjct: 71 IH----DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYL 126
Query: 236 -TSLCYH 241
L Y+
Sbjct: 127 EMDLIYN 133
Score = 96.2 bits (240), Expect = 6e-24
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
+L + +LKA +L A D +GKSDP+ + L G ++ +T NLNP +N+ F+F +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLEL--GN---DRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
L V V D D + +G++ +
Sbjct: 69 K---DIHDVLEVTVFDEDGDKPPDFLGKVAI 96
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 121 bits (306), Expect = 2e-33
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 118 LILRVISAKEL---PAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEG 174
+ V+ A ++ DM T DPYV++ + R T+ +NP WNET FE
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET--FE- 61
Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK 228
F + Q VL + + D + + D+++G + + + EK +
Sbjct: 62 FILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE 114
Score = 97.0 bits (242), Expect = 2e-24
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 243 SNSVLTITLLKARNLK---AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNE 299
S+ T+ +L+A + D+ DPYV++++ +++T+ F ++NPV+NE
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFI--STTPDSRKRTRHFNNDINPVWNE 58
Query: 300 SFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
+F F + + L + +MD + +E +G
Sbjct: 59 TFEFILDPNQENV--LEITLMDAN-YVMDETLGTATF 92
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 111 bits (280), Expect = 1e-29
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
+ L V+ AK L KD DP+ K+ + + T + TL+P+WN+
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH-STDTVKNTLDPKWNQHYDLYVGKT 65
Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE----KPTFWKALKPPAKDK--- 230
+ + V+++ + + G FL ++ + K T ++ L +
Sbjct: 66 DS-----ITISVWNHKKIHKKQGAG--FLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDT 118
Query: 231 ---CGELLTSL 238
G+++ SL
Sbjct: 119 DAVRGQIVVSL 129
Score = 95.5 bits (238), Expect = 9e-24
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
+ +T+L A+NL KD DP+ K+ + + + T K L+P +N+ + V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVV---DGSGQCHSTDTVKNTLDPKWNQHYDLYVG 63
Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGRI 334
+ S+ + V + I + + G +
Sbjct: 64 ----KTDSITISVWNHKKIHKKQGAGFL 87
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 104 bits (262), Expect = 1e-26
Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 15/130 (11%)
Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
S L + VISAK K PYV+V + + + T+ T +P+W + L
Sbjct: 36 SQLQITVISAKLKENKKNWFGPSPYVEVT-VDGQSKK--TEKCNNTNSPKWKQPLTVIVT 92
Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF---WKALKPPAKDK-- 230
P+ K LH V+ + D +G L + + S L+ +
Sbjct: 93 PVSK-----LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPT 147
Query: 231 --CGELLTSL 238
G+L L
Sbjct: 148 ETIGDLSICL 157
Score = 87.2 bits (216), Expect = 3e-20
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 235 LTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLN 294
L S+ S L IT++ A+ + K PYV+V + + +KT+ +
Sbjct: 26 LGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQSKKTEKCNNTNS 80
Query: 295 PVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
P + + + V L+ V + + L+G L
Sbjct: 81 PKWKQPLTVIVT----PVSKLHFRVWSHQTLKSDVLLGTAAL 118
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 102 bits (255), Expect = 5e-26
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
+ + + V+ A+ L AKD +G+SDPYV V + K + TK LNP W E +FE
Sbjct: 17 AKISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFEC- 72
Query: 176 PIQKLQSRVLHLHVFDYD-----------RFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224
S + + V D D + DD +G+ + + LS + W L
Sbjct: 73 ---HNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR--TLSGEMDVWYNLD 127
Query: 225 PPAKD--KCGELLTSLCY 240
G + +
Sbjct: 128 KRTDKSAVSGAIRLHISV 145
Score = 89.5 bits (222), Expect = 2e-21
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
+ ++IT++ A+ L+AKD G SDPYV V Q G+ K++T+ NLNPV+ E+F F
Sbjct: 17 AKISITVVCAQGLQAKDKTGSSDPYVTV--QVGK---TKKRTKTIYGNLNPVWEENFHFE 71
Query: 305 VPWEKIRECSLNVMVMDFDN-----------IGRNELIGRILLAGK 339
R + V V+D D+ ++ +G+ ++ +
Sbjct: 72 CHNSSDR---IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR 114
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 100 bits (251), Expect = 2e-25
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 115 NSTLILRVISAKELPAKDMS-----------GTSDPYVKVALLPDKKHRLETKIKRRTLN 163
N L +++ A L S DPY+ + + D +T K++T +
Sbjct: 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNS 62
Query: 164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV--DLSEKPTFWK 221
P W++ + R + L VF DD + + ++ + S W
Sbjct: 63 PAWHDEFVTD-----VCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117
Query: 222 ALKPPAKDKCGELLTSLCYHPSN 244
L+P G++ + S+
Sbjct: 118 DLEP-----EGKVYVIIDLSGSS 135
Score = 79.1 bits (195), Expect = 7e-18
Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 31/137 (22%)
Query: 244 NSVLTITLLKARNLKAKDINGK-----------SDPYVKVWLQFGEKRIEKRKTQIFKCN 292
N +L I + +A +LK + + DPY+ + + + RI +T +
Sbjct: 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRI--GQTATKQKT 60
Query: 293 LNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD 352
+P +++ F +V + + V IG ++ + + +++
Sbjct: 61 NSPAWHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTI------------QFEE 104
Query: 353 MITKPRQTIVQWHRLKP 369
++ + W L+P
Sbjct: 105 LLQNGSRHFEDWIDLEP 121
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 98.9 bits (246), Expect = 1e-24
Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 21/125 (16%)
Query: 115 NSTLILRVISAKELPAKDMSG----------TSDPYVKVALLPDKKHRLETKIKRRTLNP 164
N L +R+ A L S DPY+ V++ D+ +T K++T P
Sbjct: 28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQTSTKQKTNKP 85
Query: 165 RWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV----DLSEKPTFW 220
+NE F L L VF D + L ++ S+ W
Sbjct: 86 TYNEE-----FCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGW 140
Query: 221 KALKP 225
L+P
Sbjct: 141 VDLEP 145
Score = 76.9 bits (189), Expect = 6e-17
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 18/103 (17%)
Query: 244 NSVLTITLLKARNLKAKDINGK----------SDPYVKVWLQFGEKRIEKRKTQIFKCNL 293
N L + + +A L+ + + DPY+ V + ++ +T +
Sbjct: 28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTN 83
Query: 294 NPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
P +NE F NV L + V +G + + L
Sbjct: 84 KPTYNEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTL 122
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 99.2 bits (246), Expect = 3e-22
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 7/128 (5%)
Query: 118 LILRVISAKEL---PAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEG 174
+ V+ A ++ DM T DPYV++ + R T+ +NP WNET FE
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET--FE- 76
Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGEL 234
F + Q VL + + D + D+++G + + + EK +
Sbjct: 77 FILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 135
Query: 235 LTSLCYHP 242
L
Sbjct: 136 LEVCSCPD 143
Score = 85.0 bits (209), Expect = 1e-17
Identities = 25/169 (14%), Positives = 63/169 (37%), Gaps = 8/169 (4%)
Query: 241 HPSNSVLTITLLKARNLK---AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVF 297
H + T+ +L+A + D+ DPYV++++ +++T+ F ++NPV+
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFI--STTPDSRKRTRHFNNDINPVW 71
Query: 298 NESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKP 357
NE+F F + +E L + +MD + +E +G + + +
Sbjct: 72 NETFEFILD--PNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 128
Query: 358 RQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVK 406
+ + +++ + + + ++G
Sbjct: 129 EMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKN 177
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration,
endonucl magnesium, metal-binding, multifunctional
enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Length = 219
Score = 79.1 bits (195), Expect = 4e-17
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSY 428
Q ++ +G+ H ++P S E +K L K +N + L +
Sbjct: 126 ESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMFNAFESALAGTLITL 185
Query: 429 NSTPHTTLGVSPAELHLGRKLKTTFDKLLPN 459
N LG SP ++ + K + + +
Sbjct: 186 NIKRKGGLGTSPMDIFIFNKEQQRIQQQSKS 216
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding
protein; 2.20A {Bovine immunodeficiency virus} PDB:
3kkr_A
Length = 152
Score = 74.3 bits (183), Expect = 5e-16
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN--WNNVDEELLNFSQSY 428
H ++ + +G++ Y+P S G E +K L V+ L S
Sbjct: 68 HRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRLAAYQGDCETVEAALSLALVSL 127
Query: 429 NSTPHTTLGVSPAELHLGRK 448
N G +P E++L +
Sbjct: 128 NKKRGGIGGHTPYEIYLESE 147
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 66.9 bits (163), Expect = 1e-13
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 14/122 (11%)
Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
S L + V AK A++ + YV + + + + T I R P W + FE
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKV---QNVK-STTIAVRGSQPSWEQDFMFEIN 57
Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF--WKALKPPAKDKCGE 233
+ L + V++ D +G V++PL + S + W L A E
Sbjct: 58 RLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 112
Query: 234 LL 235
+
Sbjct: 113 IC 114
Score = 50.0 bits (119), Expect = 8e-08
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 25/129 (19%)
Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
S+L + + KA+ A++ K + YV + +Q K T + P + + F F
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ-----NVKSTTIAVR-GSQPSWEQDFMFE 55
Query: 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQW 364
+ + L V V + + + ++G + + + + + +W
Sbjct: 56 INRLDL---GLTVEVWN-KGLIWDTMVGTVWIP------------LRTIRQSNEEGPGEW 99
Query: 365 HRLKPDHEM 373
L M
Sbjct: 100 LTLDSQAIM 108
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 70.7 bits (172), Expect = 3e-13
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 110 EYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNET 169
+ L++ A+ L + +D Y+KV T + NPRW +
Sbjct: 388 PRQRGLAHLVVSNFRAEHLWGDYTT-ATDAYLKVFF---GGQEFRTGVVWNNNNPRWTDK 443
Query: 170 LYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214
+ FE + L + V+D D DD +G C
Sbjct: 444 MDFE--NVLLSTGGPLRVQVWDADYGWDDDLLGS-----CDRSPH 481
Score = 53.8 bits (128), Expect = 7e-08
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 240 YHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNE 299
+ L ++ +A +L +D Y+KV+ ++ +T + N NP + +
Sbjct: 389 RQRGLAHLVVSNFRAEHLWGDYTT-ATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTD 442
Query: 300 SFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGR 333
F L V V D D ++L+G
Sbjct: 443 KMDFENVLLSTGG-PLRVQVWDADYGWDDDLLGS 475
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 70.0 bits (170), Expect = 5e-13
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 10/133 (7%)
Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTL---NPRWNETLYF 172
+ L L +I A+ELP K Y ++ L D T K R+ W E F
Sbjct: 11 NVLKLWIIEARELPPKK-----RYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEF 63
Query: 173 EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCG 232
P + L+ + + +G V +P+ + W + P
Sbjct: 64 NNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGS 123
Query: 233 ELLTSLCYHPSNS 245
+ S S
Sbjct: 124 GGMGSGGGGGSGG 136
Score = 44.6 bits (104), Expect = 5e-05
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 2/120 (1%)
Query: 241 HPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNES 300
+ NS +LK ++A+++ K Y ++ L + E
Sbjct: 2 NKDNSRRVDNVLKLWIIEARELPPKKRYYCELCLD-DMLYARTTSKPRSASGDTVFWGEH 60
Query: 301 FSFNVPWEKIR-ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQ 359
F FN L + +G + + +G T+ W +
Sbjct: 61 FEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 60.0 bits (145), Expect = 7e-11
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
S L + V AK A++ + YV + + + T I R P W + FE
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVES----TTIAVRGSQPSWEQDFMFE-- 64
Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF--WKALKPPAKDKCGE 233
I +L + + V++ D +G V++PL + S + W L A E
Sbjct: 65 -INRLDLGLT-VEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 121
Query: 234 L 234
+
Sbjct: 122 I 122
Score = 44.2 bits (104), Expect = 1e-05
Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
S+L + + KA+ A++ K + YV + +Q + T + P + + F F
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ-----NVESTTIAVR-GSQPSWEQDFMFE 64
Query: 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
+ + L V V + + + ++G + +
Sbjct: 65 IN---RLDLGLTVEVWN-KGLIWDTMVGTVWI 92
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein;
3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Length = 164
Score = 59.8 bits (145), Expect = 7e-11
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 373 MQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSYNS 430
++ G+ H Y+P S G E M +K + + N+V+ +L N
Sbjct: 77 VKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNH 136
Query: 431 TPHTTLG-VSPAELHLGR 447
+G ++PAE +
Sbjct: 137 KRRGGIGDMTPAERLINM 154
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure,
transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1
c.55.3.2 PDB: 1c1a_A
Length = 238
Score = 61.2 bits (148), Expect = 8e-11
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQ---- 426
+ +L G++H + E ++K +R + + + S+
Sbjct: 81 KSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGEL 140
Query: 427 ------SYNSTPHTTLGVSPAELHLGRKLKT 451
+ N +P + H + T
Sbjct: 141 LAKAMYALNHKERGENTKTPIQKHWRPTVLT 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 9e-11
Identities = 81/553 (14%), Positives = 134/553 (24%), Gaps = 187/553 (33%)
Query: 7 NHAISKLTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSS-HAMEGA-----IASSSSST 60
N +K +SR Q +L A + P + G+ S
Sbjct: 123 NQVFAKYNVSRL--QPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 61 PLHNKAVANV---KAGEHPSS----AFMQSRSVSLVDMYIDNTEPSENVGQ-IH------ 106
+ K + S +Q + + ++ S N+ IH
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 107 --FSLEYDFDNSTLILR-VISAKELPAKDMS-----GTSDPYVKVALLPDKKHRLETKIK 158
++N L+L V +AK A ++S T V L +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP--LCQVDLSEK 216
TL P E L + L D LP +
Sbjct: 295 SMTLTPD--EVK--------SLLLKYLDCRPQD--------------LPREVLTT----- 325
Query: 217 PTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQF 276
+P ++++ +D D + V
Sbjct: 326 ------------------------NP----RRLSIIAES---IRDGLATWDNWKHV---- 350
Query: 277 GEKRIEKRKTQIFKC--NLNP-----------VFNESFSFNVP-------W-EKIRECSL 315
+K T I L P VF S ++P W + I+ +
Sbjct: 351 ---NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVM 405
Query: 316 NVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHR--------- 366
V+ N+L L+ + + + HR
Sbjct: 406 VVV---------NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 367 -------LKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVK-----RFLRK--- 411
L P + Q F +G +H + E M RFL +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIG--------HHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 412 ---CNWNNVDEEL-----LNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLL-PNPTC 462
WN L L F + Y + + R + D L
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPY---------ICDNDPKYERLVNAILDFLPKIEENL 559
Query: 463 TQNKIPSVSNFAL 475
+K + AL
Sbjct: 560 ICSKYTDLLRIAL 572
Score = 53.7 bits (128), Expect = 9e-08
Identities = 50/350 (14%), Positives = 93/350 (26%), Gaps = 106/350 (30%)
Query: 64 NKAVANVKAG--------EHPSSAFMQSRSVSLVDMYIDNTE---PSENVGQIH------ 106
K V + + +H S SL+ Y+D P E V +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSI 332
Query: 107 -------------FSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL 153
+ D T I+ S L + + ++++ P
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYR---KMFDRLSVFPP----- 383
Query: 154 ETKIKRRTLNPRWNETLYFEGFPI-QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
I L+ W + + + + KL L + + +P ++
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---------VEKQPKESTISIPSIYLE 434
Query: 213 LSEKPTFWKAL--------KPPAKDKCGELLTS---------LCYHPSNSVLTITLLKAR 255
L K AL P +L+ + +H
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-------------- 480
Query: 256 NLKAKDINGKSDPYVKVWLQFG--EKRIEKRKTQIFKCNLNPVFN---------ESFSFN 304
LK + + + V+L F E++I R + N N
Sbjct: 481 -LKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 305 VPWEKIRECSLNVMVMDF-DNIGRNELIG------RILLAGKNGSGASET 347
P + ++ +DF I N + RI L ++ + E
Sbjct: 538 DPKYERLVNAI----LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 44.1 bits (103), Expect = 1e-04
Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 60/249 (24%)
Query: 1 MFDGFKNHAISKLTLSRFLSQSVAQLETAGT-------TVDSNNSKSPVPGSSHAMEGAI 53
+D +K+ KLT + S+ LE A +V ++ P + +
Sbjct: 343 TWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP----TILLSLIW 396
Query: 54 ASSSSSTP------LHNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHF 107
S LH ++ + P + ++S+ +Y++ EN +H
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVE----KQP-----KESTISIPSIYLELKVKLENEYALHR 447
Query: 108 SL--EYD----FDNSTLILRVIS-------AKELPAKDMSGTSDPYVKVALLPDKKHR-L 153
S+ Y+ FD+ LI + L + + V L D R L
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--D--FRFL 503
Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQS-RVLHLHVFD----YDRFSRDDSIGEVFLPL 208
E KI+ + WN + G + LQ + ++ D Y+R I + FLP
Sbjct: 504 EQKIRHDSTA--WNAS----GSILNTLQQLKFYKPYICDNDPKYERLVNA--ILD-FLPK 554
Query: 209 CQVDLSEKP 217
+ +L
Sbjct: 555 IEENLICSK 563
Score = 40.2 bits (93), Expect = 0.001
Identities = 71/442 (16%), Positives = 126/442 (28%), Gaps = 160/442 (36%)
Query: 107 FSLEYDF-DNSTLILRVISAKELPAKDMSGTSDP----YVKVALLPDKKHRLETKIKRRT 161
F +D D + ++S +E+ + + D L K+ + K
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 162 LNPRWN---ETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT 218
L + + E Q S + +++ DR D +VF ++S
Sbjct: 87 LRINYKFLMSPIKTE--QRQP--SMMTRMYIEQRDRLYND---NQVFAKY---NVSRLQP 136
Query: 219 FWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDI-------NGKSDPYVK 271
+ K L LL+ R AK++ +GK+
Sbjct: 137 YLK-------------------------LRQALLELR--PAKNVLIDGVLGSGKT----- 164
Query: 272 VWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECS--------LNVMVMDFD 323
W+ ++ + +C F + W ++ C+ L ++ D
Sbjct: 165 -WVA-----LDVCLSYKVQCK--------MDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 324 -----------------NIGRNELIGRILLAGKNGSGA-------SETKHWQD------- 352
+ + EL R LL K K W
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 353 -MITKPRQTI------VQWHR--------LKPDHEMQTFLQSVGVSHIRIP----TYHPA 393
+ T+ +Q H L PD L+ + +P T +P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP- 327
Query: 394 SNGAAENMVGVVKR--FLRKCNWNNVDEELLN--FSQSYNSTPHTTLGVSPAELHLGRKL 449
+++ R NW +V+ + L S N + PAE RK+
Sbjct: 328 ---RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-------LEPAEY---RKM 374
Query: 450 KTTFDKL--LPNPTCTQNKIPS 469
FD+L P IP+
Sbjct: 375 ---FDRLSVFPPSA----HIPT 389
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 56.5 bits (136), Expect = 7e-10
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPV-FNESFSFNV 305
L + L L+ G++D KV R + +++ + + F+E+F + V
Sbjct: 23 LIVHLKTVSELR-----GRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWPV 72
Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
R L + + ++ + N+LIG +
Sbjct: 73 ASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMV 104
Score = 51.9 bits (124), Expect = 2e-08
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPR-WNETLYFEGF 175
LI+ + + EL G +D KV +++ + ++ET F +
Sbjct: 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSF---YSRVLENCEDVADFDET--FR-W 70
Query: 176 PIQK--LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
P+ ++ VL + +F+Y + + IG + L +V
Sbjct: 71 PVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108
>2x78_A Integrase; viral protein, DNA-directed DNA polyme
nucleotidyltransferase, DNA integration, aspartyl
protease, recombination, transferase; 2.00A {Human
spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Length = 200
Score = 56.6 bits (137), Expect = 2e-09
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 373 MQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC------NWNNVDEELLNFSQ 426
+ + G+ YHP S E +KR L K W + L
Sbjct: 86 FAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKW---YDLLPVVQL 142
Query: 427 SYNSTPHTTLGVSPAELHLGRKLKTTFDKLL 457
+ N+T L +P +L G T F
Sbjct: 143 ALNNTYSPVLKYTPHQLLFGIDSNTPFANQD 173
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease,
polynucleotidyl transferase, DNA binding, viral protein;
1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A
3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A
1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A
1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Length = 163
Score = 55.6 bits (134), Expect = 2e-09
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 372 EMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSYN 429
++ G+ Y+P S G E+M +K+ + + ++ + +N
Sbjct: 76 TVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHN 135
Query: 430 STP-HTTLGVSPAELHLG---RKLKTT 452
G S E + ++T
Sbjct: 136 HKRKGGIGGYSAGERIVDIIATDIQTK 162
>3av9_A Integrase, IN; protein-protein interactions, HIV,
recombination-inhibitor C; 1.70A {Human immunodeficiency
virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A
3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A*
3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Length = 183
Score = 55.8 bits (134), Expect = 2e-09
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSY 428
++ G+ Y+P S G E+M +K+ + + ++ + +
Sbjct: 95 TTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIH 154
Query: 429 NSTPHTTL-GVSPAELHLG 446
N + G S E +
Sbjct: 155 NHKRKGGIGGYSAGERIVD 173
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human
spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 3s3m_A* 3l2q_A
3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A*
3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A*
3oyb_A* 3oyg_A* ...
Length = 395
Score = 57.8 bits (140), Expect = 3e-09
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 373 MQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC------NWNNVDEELLNFSQ 426
+ + G+ YHP S+G E +KR L K W +LL Q
Sbjct: 198 FAEWAKERGIHLEFSTPYHPQSSGKVERKHSDIKRLLTKLLVGRPTKW----YDLLPVVQ 253
Query: 427 -SYNSTPHTTLGVSPAELHLGRKLKTTFDK 455
+ N+T L +P +L G T F
Sbjct: 254 LALNNTYSPVLKYTPHQLLFGIDSNTPFAN 283
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet,
CIS-Pro viral protein; HET: CPS; 2.80A {Human
immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB:
1qmc_A 1ihv_A 1ihw_A
Length = 239
Score = 55.5 bits (133), Expect = 6e-09
Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 5/132 (3%)
Query: 344 ASETKHWQDMI---TKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAEN 400
ET ++ + + ++ G+ Y+P S G E+
Sbjct: 45 GQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVVES 104
Query: 401 MVGVVKRFLRKC--NWNNVDEELLNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLLP 458
M +K+ + + ++ + +N +G A + + T
Sbjct: 105 MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKEL 164
Query: 459 NPTCTQNKIPSV 470
T+ + V
Sbjct: 165 QKQITKIQNFRV 176
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human
immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB:
1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Length = 212
Score = 52.7 bits (126), Expect = 4e-08
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 372 EMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSYN 429
++ G+ Y+P S G E+M +K+ + + ++ + +N
Sbjct: 125 TVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHN 184
Query: 430 STPH-TTLGVSPAELHLG 446
G S E +
Sbjct: 185 KKRKGGIGGYSAGERIVD 202
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 53.9 bits (129), Expect = 6e-08
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
L++ VI A EL A +G S+PY ++++ + + T+ + TLNP+WN F
Sbjct: 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISM-GSQSYT--TRTIQDTLNPKWNFNCQF- 440
Query: 174 GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
I+ L VL L +FD D+FS DD +G +P+ ++
Sbjct: 441 --FIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKI 476
Score = 31.5 bits (71), Expect = 0.73
Identities = 32/195 (16%), Positives = 74/195 (37%), Gaps = 19/195 (9%)
Query: 148 DKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP 207
+ K + +Y + ++ ++ D F I V+
Sbjct: 284 KQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFH-ISHIDRVYT- 341
Query: 208 LCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSV---------LTITLLKARNLK 258
L +++E+ + + +K A ++ + + L + +++A LK
Sbjct: 342 LRTDNINERTAWVQKIKA-ASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELK 400
Query: 259 AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVM 318
A NGKS+PY ++ + + T+ + LNP +N + F + + + + L +
Sbjct: 401 ACKPNGKSNPYCEISM-----GSQSYTTRTIQDTLNPKWNFNCQFFI--KDLYQDVLCLT 453
Query: 319 VMDFDNIGRNELIGR 333
+ D D ++ +GR
Sbjct: 454 LFDRDQFSPDDFLGR 468
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 50.7 bits (120), Expect = 7e-07
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 117 TLILRVISAKELPAKDMSGTS--DPYVKVALL---PDKKHRLETKIKRRTLNPRWNETLY 171
L +R+IS ++LP + + S DP V V + D R I NPRW+
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557
Query: 172 FEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
F + ++ V DYD S++D IG+ +P
Sbjct: 558 ---FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPW 591
Score = 46.8 bits (110), Expect = 1e-05
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 223 LKPPAKDKCGELLTSLCYHPSNSV----LTITLLKARNLKAKDINGKS--DPYVKVWLQF 276
LKP S L + ++ + L + N S DP V V +
Sbjct: 471 LKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHG 530
Query: 277 GEKRIEKRKTQIFKCN-LNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
+ R+T + N NP ++ F F V + + MV D+D+ +N+ IG
Sbjct: 531 VGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVEDYDSSSKNDFIG 585
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration,
endonuclease magnesium, metal-binding, multifunctional
enzyme; 3.20A {Human immunodeficiency virus type 2} PDB:
1e0e_A
Length = 210
Score = 49.0 bits (116), Expect = 8e-07
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 5/111 (4%)
Query: 342 SGASETKHWQDMITK--PRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAE 399
SG + ++ E++ +G+ Y+P S G E
Sbjct: 94 SGRQTALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVE 153
Query: 400 NMVGVVKRFLRKC--NWNNVDEELLNFSQSYNSTPHTTL-GVSPAELHLGR 447
M +K + + N ++ +L N + ++P+E +
Sbjct: 154 AMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPSERLINM 204
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by
alpha-helices, transferase; HET: EPE; 1.02A {Avian
sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A*
1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A*
1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A*
1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Length = 162
Score = 44.4 bits (105), Expect = 1e-05
Identities = 7/65 (10%), Positives = 19/65 (29%)
Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNS 430
+ +L G++H + E ++K +R + + + S+
Sbjct: 82 KSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGEL 141
Query: 431 TPHTT 435
Sbjct: 142 LAKAM 146
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 43.1 bits (101), Expect = 3e-05
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 26/136 (19%)
Query: 120 LRVISAKELPAKDMSG-TSDPYVKVALLPDKKHRLETK----IKRRTLNPRWNETLYFEG 174
+ + + + G +PY V + + E K+ T+ P W+ T
Sbjct: 14 IGLSNFDCGSCQSCQGEAVNPYCAVLV--KEYVESENGQMYIQKKPTMYPPWDST----- 66
Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV-----DLSEKPTFWKALKPPAKD 229
F + RV+ + V + D I E + L + + K W LKP
Sbjct: 67 FDAHINKGRVMQIIVKGKN----VDLISETTVELYSLAERCRKNNGKTEIWLELKP---- 118
Query: 230 KCGELLTSLCYHPSNS 245
G +L + Y S
Sbjct: 119 -QGRMLMNARYFLEMS 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 7e-05
Identities = 89/522 (17%), Positives = 147/522 (28%), Gaps = 178/522 (34%)
Query: 9 AISKLTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASS------SSSTPL 62
A S +R L+ S LE + VP +S +S + P
Sbjct: 3 AYS----TRPLTLSHGSLEH---VL-------LVPTASF-----FIASQLQEQFNKILPE 43
Query: 63 HNKAVANVKAGEHPSSAFMQSRSVSLVDMYI----DNTEPSENVGQIHFSLEY---DFDN 115
+ A A + P++ LV ++ EPS+ VGQ L +F+N
Sbjct: 44 PTEGFA---ADDEPTT------PAELVGKFLGYVSSLVEPSK-VGQFDQVLNLCLTEFEN 93
Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE-- 173
L +D + A L + K K N Y
Sbjct: 94 CYL----------------EGNDIHALAAKLLQENDTTLVKTKELIKN-------YITAR 130
Query: 174 ---GFPIQKLQSRVLHLHVFD-----YDRFSRDDSIG-----EVFLPLCQVDLSEKPTFW 220
P K + L V + F G + + +L + +
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIF------GGQGNTDDYFE----ELRD---LY 177
Query: 221 KALKPPAKD---KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
+ D E L+ L A + + +N + WL+
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTL---------DAEKVFTQGLN------ILEWLENP 222
Query: 278 EKRIEKRKTQIFKCNLNPVFNESFSFNVP--WEKIRECSL-NVMVMDFDNIGRN--ELIG 332
P ++ + ++P I L + +V +G EL
Sbjct: 223 SNT--------------P--DKDYLLSIPISCPLIGVIQLAHYVVT-AKLLGFTPGEL-- 263
Query: 333 RILLAGKNGSGA--------SETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGV-S 383
R L G G +ET W+ R+ I T L +GV
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-------------TVLFFIGVRC 310
Query: 384 HIRIP-TYHPAS---------NGAAENMVGV-------VKRFLRKCNWNNVDEELLNFSQ 426
+ P T P S G M+ + V+ ++ K N + + + S
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 427 SYNSTPHTTLGVSPAELHLGRKLKTTFDKLLPNPTCTQNKIP 468
N + + P L+ L T K Q++IP
Sbjct: 371 -VNGAKNLVVSGPPQSLYG---LNLTLRKAKAPSGLDQSRIP 408
Score = 39.6 bits (92), Expect = 0.002
Identities = 59/379 (15%), Positives = 113/379 (29%), Gaps = 123/379 (32%)
Query: 45 SSHAMEGAIASSSSSTPLHNKAVANVKA-----GEHPSSAFMQSRSVS-----LVDM--Y 92
S+ + I ++ + + + + N+ P ++ S +S ++ + Y
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 93 ID-----NTEPSE---------NVGQ-------IHFSLEYD--FDNSTLILRVI------ 123
+ P E Q I + ++ F + + V+
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 124 -----SAKELPAKDMS-------GTSDPYVKVALLPDKKHRLETKIKRRTLN---PRWNE 168
LP + G P + ++ L ++ ++ + + N P +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ--VQDYVNK--TNSHLPA-GK 364
Query: 169 TLYFE-----------GFPIQKLQSRVLHLH------VFDYDR--FS-RDDSIGEVFLPL 208
+ G P Q L L L D R FS R FLP
Sbjct: 365 QVEISLVNGAKNLVVSGPP-QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP- 422
Query: 209 CQVDLSEKPTFWKALKPPAKDKCGELLTS--LCYHPSNSVLTITLLKARNLKAKDINGKS 266
++ P F L PA D + L + ++ + + I + + D
Sbjct: 423 ----VAS-P-FHSHLLVPASDLINKDLVKNNVSFNAKD--IQIPVYDTFD--GSD----- 467
Query: 267 DPYVKVWLQFGEKRIEKRKTQIFKCNLN-PVFNESFSFNVPWEKIRECSLNVMVMDFDNI 325
L+ I +R I C + PV WE + ++DF
Sbjct: 468 -------LRVLSGSISER---IVDCIIRLPVK---------WETTTQFKAT-HILDFGP- 506
Query: 326 GRNELIGRILLAGKNGSGA 344
G +G + K+G+G
Sbjct: 507 GGASGLGVLTHRNKDGTGV 525
Score = 32.7 bits (74), Expect = 0.31
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 45/129 (34%)
Query: 149 KKHRLET------KIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIG 202
H +T I NP N T++F G ++++ Y + +
Sbjct: 1650 DNHFKDTYGFSILDIVIN--NPV-NLTIHFGGEKGKRIREN--------YSAMIFETIVD 1698
Query: 203 EVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTIT------LL---K 253
L + F + E TS + +L+ T L K
Sbjct: 1699 G--------KLKTEKIF---------KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 254 A--RNLKAK 260
A +LK+K
Sbjct: 1742 AAFEDLKSK 1750
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 40.1 bits (93), Expect = 2e-04
Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 120 LRVISAKELPAKDMSGTSDPYVKVAL--LPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
+ S + + + P+ V + + K+ T+ P W T F
Sbjct: 10 IAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKST-----FDA 64
Query: 178 QKLQSRVLHLHVFDY-DRFSRDDSIG-EVFLPLCQVDLSEKPTFWKALKPPAKDKCGELL 235
+ RV+ + + + + ++G V C+ + + K FW L+P ++L
Sbjct: 65 HIYEGRVIQIVLMRAAEEPVSEVTVGVSVLAERCKKN-NGKAEFWLDLQP-----QAKVL 118
Query: 236 TSLCY 240
S+ Y
Sbjct: 119 MSVQY 123
Score = 27.0 bits (59), Expect = 7.8
Identities = 15/114 (13%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWL------QFGEKRIEKRKTQIFKCNLNPVFNES 300
L I + + + P+ V + + G+ ++K+ T + P + +
Sbjct: 8 LRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPT------MYPEWKST 61
Query: 301 FSFNVPWEKIRECSLNVMVMDF-DNIGRNELIGRILLAGKNGSGASETKHWQDM 353
F ++ + +++M + +G +LA + + + W D+
Sbjct: 62 FDAHI----YEGRVIQIVLMRAAEEPVSEVTVGVSVLAERCKKNNGKAEFWLDL 111
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 37.6 bits (86), Expect = 0.008
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLP-----DKKHRLETKIKRRTLNPRWNETLY 171
TL + VIS + L + + YV+V L +++R + ++NP W E
Sbjct: 679 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEP- 733
Query: 172 FEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
F I + L + V + + +G +P+
Sbjct: 734 FVFEKILMPELASLRVAVMEEG----NKFLGHRIIPI 766
Score = 30.3 bits (67), Expect = 1.7
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 223 LKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKV---WLQFGEK 279
LK + + + V+ TL YV+V L K
Sbjct: 652 LKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSERSVRTYVEVELFGLPGDPK 711
Query: 280 RIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN 324
R + K ++NPV+ E SL V VM+ N
Sbjct: 712 RRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEGN 756
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 36.9 bits (84), Expect = 0.013
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALL---PDKKHRLETK-IKRRTLNPRWNETLYF 172
L ++VIS + L + YV+V + D + + T+ + + NP W+E F
Sbjct: 726 ALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEP-F 780
Query: 173 EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
+ + L + F+ +G LP+
Sbjct: 781 DFPKVVLPTLASLRIAAFEEG----GKFVGHRILPV 812
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 36.5 bits (83), Expect = 0.021
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 117 TLILRVISAKELPAKDMSGTSDPYVKV----ALLPDKKHRLETK-IKRRTLNPRWNETLY 171
T+ +++ISA+ L K + YV+V + + +TK I+ ++P ++E +
Sbjct: 651 TIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKV- 705
Query: 172 FEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
F + V+ + V + + IG +PL
Sbjct: 706 FVFKKVVLPDLAVVRIIVSEEN----GKFIGHRVMPL 738
Score = 31.1 bits (69), Expect = 1.0
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRK---TQIFKCNL-NPVFNESFS 302
+ I ++ A+ L K I YV+V + +G RK T+I + N +P ++E
Sbjct: 652 IEIKIISAQFLSDKQI----SSYVEVEM-YGLPTDTVRKKFKTKIIENNGMDPYYDEKVF 706
Query: 303 FNVPWEKIRECSLNVMVMDFDN 324
+ ++V + +
Sbjct: 707 VFKKVVLPDLAVVRIIVSEENG 728
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.0
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 10/36 (27%)
Query: 21 QSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASS 56
Q++ +L+ + K S+ A+ AI ++
Sbjct: 20 QALKKLQ--------ASLKLYADDSAPAL--AIKAT 45
Score = 28.0 bits (61), Expect = 4.7
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 9/24 (37%)
Query: 177 IQKLQSRVLHLHVFDYDRFSRDDS 200
++KLQ+ L L+ DDS
Sbjct: 22 LKKLQAS-LKLYA--------DDS 36
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1,
phosphatidilynositol 3,4,5- triphosphate, wortmannin,
H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 29.8 bits (66), Expect = 2.3
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
Query: 203 EVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDI 262
E +D P++ + + GE T + NS L I +L A + +I
Sbjct: 314 ESLYSQLPMDCFTMPSYSRRISTATPYMNGETSTKSLWVI-NSALRIKILCATYVNV-NI 371
Query: 263 NGKSDPYVKVWLQFGEKRI-EKRKTQIFKCNLNPVFNESFSFNVPWEKI-RECSLNVMVM 320
YV+ + G + + + TQ C+ NP +NE ++++ + R L + +
Sbjct: 372 RDIDKIYVRTGIYHGGEPLCDNVNTQRVPCS-NPRWNEWLNYDIYIPDLPRAARLCLSIC 430
Query: 321 DFDNIGRNE 329
+
Sbjct: 431 SVKGRKGAK 439
>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A
{Tetrahymena thermophila} PDB: 4epq_A*
Length = 477
Score = 29.1 bits (64), Expect = 3.8
Identities = 6/66 (9%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 370 DHEMQTFLQSVGVSHIRIPT-YHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSY 428
+++ +Q + S + + V ++ N + + ++++ S
Sbjct: 394 VFDLKFAIQWIASSRSNKKMIICTFQDEQTTKQIQQVFDLYKQKNASIFLKLVMDYPNSK 453
Query: 429 NSTPHT 434
+T
Sbjct: 454 YMEDYT 459
>1bev_1 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus
VG-5-27, picornavirus, icosahedral virus; HET: MYR;
3.00A {Bovine enterovirus} SCOP: b.121.4.1
Length = 281
Score = 28.6 bits (63), Expect = 4.2
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAME-GAIASSSSSTPLHNKAVANVKAG 73
L + + A AGT+ +++ + + A E GA +++ + + + +
Sbjct: 7 LKDAIDKQAAGALVAGTSTSTHSVATDSTPALQAAETGATSTARDESMIETRTIVPTHGI 66
Query: 74 EHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHFS 108
S RS SLV M + T S +I F
Sbjct: 67 HETSVESFFGRS-SLVGMPLLATGTSITHWRIDFR 100
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea
jecorina}
Length = 340
Score = 27.6 bits (61), Expect = 8.5
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 334 ILLAGKNGSGA-----SETKHWQDMITKPRQTI-VQWHRLKPDHEMQTFLQSVGVSHIRI 387
+ AG N +G ++ + P + + +MQ F+ G++ R+
Sbjct: 3 VRFAGVNIAGFDFGCTTDGTCVTSKVYPPLKNFTGSNNYPDGIGQMQHFVNEDGMTIFRL 62
Query: 388 P 388
P
Sbjct: 63 P 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.392
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,034,611
Number of extensions: 411058
Number of successful extensions: 941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 124
Length of query: 475
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 378
Effective length of database: 3,993,456
Effective search space: 1509526368
Effective search space used: 1509526368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.2 bits)