BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15959
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYY|A Chain A, Post-Fusion Hairpin Conformation Of The Sars Coronavirus
Spike Glycoprotein
pdb|1WYY|B Chain B, Post-Fusion Hairpin Conformation Of The Sars Coronavirus
Spike Glycoprotein
Length = 149
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 183 ALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRL 242
+++N + R+DK+EAE +++D+ ++ D++ GD S ++ + +++ E+ RL
Sbjct: 75 SVLNDILSRLDKVEAE-----VQIDRLITGGRGGSDVDLGDI-SGINASVVNIQKEIDRL 128
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 130 LEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLW 189
+E+ +++ + +N+ R E+L D K+ LE ++ ++ L + LV +
Sbjct: 592 MEEFVKKTAAQAINQRNRT-ERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEEL 650
Query: 190 --KRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTA 225
MD L K++ K+ +P+S P SP D+ + T
Sbjct: 651 NDSNMDALAGGKKL---KVARPLSVPGSPRDLRSNSTV 685
>pdb|1I7Q|A Chain A, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|C Chain C, Anthranilate Synthase From S. Marcescens
pdb|1I7S|A Chain A, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|C Chain C, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 519
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 74/179 (41%), Gaps = 25/179 (13%)
Query: 57 ALQEENKNLRQTSVN---------IQAKAEQEEEFISNTLMK--------KIQALKKEKE 99
A+Q+E+ LR SV + + A++ E + L + AL++++
Sbjct: 109 AVQDEDARLRSLSVFDALRTILTLVDSPADEREAVMLGGLFAYDLVAGFENLPALRQDQR 168
Query: 100 TLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAK 159
+ E L D R RL+ ++ EQ +L ++E+L+AE
Sbjct: 169 CPDFCFYLAETLLVLDHQRG-------SARLQASVFSEQASEAQRLQHRLEQLQAELQQP 221
Query: 160 QNNLEQLRREKVELE-NTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPH 217
+ + E ++L N ++E A+V++L + + + E + + + P P P+
Sbjct: 222 PQPIPHQKLENMQLSCNQSDEEYGAVVSELQEAIRQGEIFQVVPSRRFSLPCPAPLGPY 280
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 92 QALKKEKETLAHH---------YEQEEEFLTNDLSRKLNQLTEEKYRL--EQTIEQEQER 140
+ + E +LA H Y+ + L DL+R ++ E++Y+ Q I E
Sbjct: 186 EGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGN 245
Query: 141 VVNKLMRKIEKLEAETDAKQNNLEQLR 167
+ + + IE EA+ D K+ L ++R
Sbjct: 246 DIEAIAKAIE--EAKADEKRPTLIEVR 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.124 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,292,956
Number of Sequences: 62578
Number of extensions: 322813
Number of successful extensions: 1633
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 231
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)