Query psy15959
Match_columns 393
No_of_seqs 90 out of 92
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 17:24:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09755 DUF2046: Uncharacteri 100.0 1.2E-96 3E-101 710.6 39.7 305 2-310 1-309 (310)
2 KOG2129|consensus 100.0 4.3E-93 9.3E-98 707.6 36.5 303 10-313 29-336 (552)
3 KOG2129|consensus 100.0 1.2E-28 2.6E-33 247.2 25.8 181 25-207 64-326 (552)
4 PF09755 DUF2046: Uncharacteri 100.0 1.4E-26 3.1E-31 224.7 27.7 179 49-278 23-201 (310)
5 PF07888 CALCOCO1: Calcium bin 98.7 0.00089 1.9E-08 70.9 41.4 98 32-146 150-247 (546)
6 KOG4673|consensus 98.3 0.00075 1.6E-08 73.3 29.2 226 27-295 404-638 (961)
7 TIGR02169 SMC_prok_A chromosom 98.3 0.0082 1.8E-07 64.7 38.7 38 29-66 678-715 (1164)
8 TIGR02169 SMC_prok_A chromosom 98.3 0.011 2.5E-07 63.6 36.0 18 28-45 187-204 (1164)
9 TIGR02168 SMC_prok_B chromosom 98.2 0.012 2.6E-07 62.9 37.1 41 28-68 673-713 (1179)
10 PF09726 Macoilin: Transmembra 98.2 0.0016 3.4E-08 70.5 27.6 51 251-301 583-633 (697)
11 COG1196 Smc Chromosome segrega 98.2 0.015 3.3E-07 65.4 35.4 163 28-207 670-845 (1163)
12 COG1196 Smc Chromosome segrega 98.1 0.022 4.7E-07 64.2 34.4 64 115-179 797-860 (1163)
13 PF00038 Filament: Intermediat 98.0 0.013 2.8E-07 55.6 32.8 252 28-289 14-289 (312)
14 KOG0161|consensus 97.9 0.038 8.1E-07 65.9 33.7 19 117-135 977-995 (1930)
15 KOG0612|consensus 97.9 0.04 8.8E-07 63.1 31.7 267 16-297 435-783 (1317)
16 KOG0161|consensus 97.8 0.13 2.7E-06 61.7 36.0 150 87-249 976-1144(1930)
17 PF00038 Filament: Intermediat 97.8 0.033 7.1E-07 52.9 29.8 149 86-260 121-285 (312)
18 PF15070 GOLGA2L5: Putative go 97.8 0.027 5.8E-07 60.6 28.1 173 30-208 27-220 (617)
19 PF12128 DUF3584: Protein of u 97.8 0.12 2.6E-06 58.7 35.3 240 16-267 591-853 (1201)
20 PRK02224 chromosome segregatio 97.8 0.089 1.9E-06 56.6 34.7 34 144-177 367-400 (880)
21 PRK11637 AmiB activator; Provi 97.8 0.058 1.3E-06 54.3 33.5 80 27-107 42-121 (428)
22 TIGR00606 rad50 rad50. This fa 97.7 0.048 1E-06 62.2 30.2 42 228-271 1066-1107(1311)
23 PF10174 Cast: RIM-binding pro 97.7 0.022 4.7E-07 62.7 25.4 166 31-213 2-172 (775)
24 PF10174 Cast: RIM-binding pro 97.6 0.22 4.7E-06 55.2 31.0 109 186-300 468-589 (775)
25 PRK11637 AmiB activator; Provi 97.5 0.15 3.2E-06 51.4 27.4 43 27-69 49-91 (428)
26 KOG0996|consensus 97.4 0.093 2E-06 60.2 27.0 206 14-255 766-974 (1293)
27 PHA02562 46 endonuclease subun 97.4 0.2 4.3E-06 50.9 31.8 51 85-135 216-272 (562)
28 KOG4643|consensus 97.4 0.35 7.5E-06 55.2 29.6 84 23-109 255-349 (1195)
29 TIGR00606 rad50 rad50. This fa 97.3 0.52 1.1E-05 54.1 35.4 239 28-276 573-878 (1311)
30 PF09789 DUF2353: Uncharacteri 97.3 0.0082 1.8E-07 60.1 15.2 151 13-176 55-218 (319)
31 KOG0250|consensus 97.2 0.17 3.8E-06 57.5 25.9 177 28-206 298-491 (1074)
32 PRK03918 chromosome segregatio 97.2 0.43 9.3E-06 51.3 36.6 28 29-56 456-483 (880)
33 PF14662 CCDC155: Coiled-coil 97.2 0.21 4.5E-06 47.5 25.1 182 28-250 11-192 (193)
34 KOG0612|consensus 97.2 0.12 2.5E-06 59.6 24.4 31 186-216 745-775 (1317)
35 PRK02224 chromosome segregatio 97.2 0.49 1.1E-05 51.1 35.8 53 28-81 471-523 (880)
36 PF14662 CCDC155: Coiled-coil 97.2 0.23 4.9E-06 47.2 22.3 141 30-178 27-189 (193)
37 KOG0250|consensus 97.2 0.75 1.6E-05 52.7 34.7 160 145-339 349-508 (1074)
38 PF07888 CALCOCO1: Calcium bin 97.1 0.52 1.1E-05 50.6 38.8 79 27-105 152-236 (546)
39 KOG1029|consensus 97.1 0.76 1.7E-05 51.6 28.3 86 160-251 408-500 (1118)
40 PF04849 HAP1_N: HAP1 N-termin 97.1 0.11 2.4E-06 52.1 20.1 125 22-152 157-281 (306)
41 PF12128 DUF3584: Protein of u 97.0 0.93 2E-05 51.8 35.6 171 119-299 367-541 (1201)
42 PF05911 DUF869: Plant protein 96.9 0.5 1.1E-05 52.5 25.7 71 32-105 24-94 (769)
43 PF04849 HAP1_N: HAP1 N-termin 96.9 0.3 6.4E-06 49.1 21.8 97 85-182 163-269 (306)
44 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.9 0.25 5.4E-06 42.8 18.7 73 31-104 2-74 (132)
45 PRK03918 chromosome segregatio 96.9 0.87 1.9E-05 49.0 34.8 34 28-61 196-229 (880)
46 COG4942 Membrane-bound metallo 96.8 0.82 1.8E-05 47.8 33.0 77 29-113 42-118 (420)
47 PRK04863 mukB cell division pr 96.8 1.8 3.9E-05 51.2 31.8 48 86-135 318-365 (1486)
48 KOG0971|consensus 96.7 1.6 3.5E-05 49.8 28.7 192 29-249 329-544 (1243)
49 KOG4674|consensus 96.7 2.3 4.9E-05 51.3 31.0 112 85-206 83-194 (1822)
50 KOG0971|consensus 96.7 1.7 3.6E-05 49.7 29.9 96 176-285 329-429 (1243)
51 KOG1029|consensus 96.6 1.7 3.7E-05 49.0 27.0 99 146-259 485-585 (1118)
52 PF10146 zf-C4H2: Zinc finger- 96.6 0.24 5.1E-06 47.6 18.0 38 140-177 32-69 (230)
53 COG1579 Zn-ribbon protein, pos 96.6 0.83 1.8E-05 44.5 22.2 65 229-293 109-173 (239)
54 PHA02562 46 endonuclease subun 96.5 1.2 2.5E-05 45.5 26.6 27 33-59 175-201 (562)
55 KOG0977|consensus 96.5 0.48 1E-05 50.8 20.9 15 275-289 372-386 (546)
56 KOG0980|consensus 96.5 2.2 4.9E-05 48.3 30.6 85 114-207 427-511 (980)
57 PF10473 CENP-F_leu_zip: Leuci 96.4 0.52 1.1E-05 42.5 17.9 88 87-183 8-95 (140)
58 KOG4674|consensus 96.3 4 8.7E-05 49.4 34.1 51 85-135 1310-1363(1822)
59 KOG0018|consensus 96.3 3.3 7.1E-05 47.9 30.5 181 28-208 655-888 (1141)
60 COG0419 SbcC ATPase involved i 96.2 2.7 5.7E-05 46.6 34.7 28 173-200 351-378 (908)
61 COG1340 Uncharacterized archae 96.2 1.6 3.4E-05 43.9 30.8 138 115-292 135-274 (294)
62 PF09789 DUF2353: Uncharacteri 96.1 0.77 1.7E-05 46.4 19.0 34 37-70 14-47 (319)
63 PRK04778 septation ring format 96.0 2.5 5.4E-05 44.7 25.6 127 48-174 277-417 (569)
64 KOG4643|consensus 96.0 4.4 9.6E-05 46.8 30.2 233 32-281 301-556 (1195)
65 PF09730 BicD: Microtubule-ass 96.0 3.6 7.8E-05 45.7 34.8 87 28-116 30-144 (717)
66 PF05622 HOOK: HOOK protein; 95.9 0.002 4.3E-08 68.8 0.0 69 24-97 238-306 (713)
67 smart00787 Spc7 Spc7 kinetocho 95.9 2.1 4.6E-05 42.7 24.2 144 81-256 143-290 (312)
68 PF05557 MAD: Mitotic checkpoi 95.8 0.17 3.6E-06 54.5 13.7 59 147-206 503-582 (722)
69 PF06005 DUF904: Protein of un 95.8 0.19 4E-06 40.7 10.7 65 27-92 6-70 (72)
70 PF12718 Tropomyosin_1: Tropom 95.8 1.2 2.6E-05 39.7 16.8 79 27-105 16-96 (143)
71 PF13851 GAS: Growth-arrest sp 95.7 1.8 3.9E-05 40.5 20.0 95 25-133 21-115 (201)
72 PF15070 GOLGA2L5: Putative go 95.5 4.7 0.0001 43.9 31.6 150 45-205 21-189 (617)
73 PF09728 Taxilin: Myosin-like 95.5 3 6.5E-05 41.5 34.0 259 26-293 23-306 (309)
74 PRK09039 hypothetical protein; 95.5 3.2 6.9E-05 41.7 21.6 64 229-292 136-199 (343)
75 PF06705 SF-assemblin: SF-asse 95.4 2.4 5.3E-05 40.0 31.1 93 101-193 75-167 (247)
76 PF10473 CENP-F_leu_zip: Leuci 95.4 2.1 4.5E-05 38.8 20.5 132 37-196 8-139 (140)
77 TIGR03185 DNA_S_dndD DNA sulfu 95.3 5 0.00011 42.9 33.4 26 183-208 391-416 (650)
78 PF14915 CCDC144C: CCDC144C pr 95.2 4 8.6E-05 41.4 30.0 54 36-89 3-60 (305)
79 PRK04863 mukB cell division pr 95.2 9.4 0.0002 45.5 30.4 28 18-45 220-250 (1486)
80 KOG0980|consensus 95.2 7.7 0.00017 44.3 25.2 24 146-169 493-516 (980)
81 KOG0963|consensus 95.1 6.7 0.00015 43.1 33.8 108 30-138 112-230 (629)
82 PF08317 Spc7: Spc7 kinetochor 95.1 3.9 8.5E-05 40.4 25.0 142 81-254 148-293 (325)
83 PF05557 MAD: Mitotic checkpoi 95.0 0.0067 1.5E-07 64.9 0.0 57 228-296 255-311 (722)
84 COG1579 Zn-ribbon protein, pos 94.9 4 8.7E-05 39.9 23.9 60 144-207 114-173 (239)
85 TIGR02680 conserved hypothetic 94.8 11 0.00023 44.3 33.5 27 229-255 424-450 (1353)
86 PRK09039 hypothetical protein; 94.8 5.1 0.00011 40.2 23.2 108 88-197 87-194 (343)
87 TIGR01005 eps_transp_fam exopo 94.7 7.1 0.00015 42.1 21.6 49 119-167 317-365 (754)
88 PF09730 BicD: Microtubule-ass 94.6 6.2 0.00013 43.9 21.1 92 145-255 357-451 (717)
89 PF05622 HOOK: HOOK protein; 94.6 0.0098 2.1E-07 63.6 0.0 178 27-207 262-476 (713)
90 PF08614 ATG16: Autophagy prot 94.3 0.86 1.9E-05 41.7 11.9 39 28-66 70-108 (194)
91 PF15035 Rootletin: Ciliary ro 94.2 1.8 3.9E-05 40.2 13.9 63 178-240 11-74 (182)
92 TIGR01843 type_I_hlyD type I s 94.1 6 0.00013 38.3 22.7 60 149-208 205-271 (423)
93 PF09726 Macoilin: Transmembra 94.1 12 0.00025 41.5 27.0 91 32-138 425-515 (697)
94 PF09731 Mitofilin: Mitochondr 94.1 9 0.00019 40.1 26.7 111 96-208 307-423 (582)
95 PF10186 Atg14: UV radiation r 93.8 5.6 0.00012 36.9 17.1 15 91-105 29-43 (302)
96 PF09787 Golgin_A5: Golgin sub 93.7 11 0.00023 39.7 29.5 19 254-272 336-354 (511)
97 KOG0249|consensus 93.6 16 0.00034 41.4 23.1 59 176-264 220-278 (916)
98 PF05701 WEMBL: Weak chloropla 93.5 12 0.00025 39.7 31.6 22 229-250 336-357 (522)
99 PF08317 Spc7: Spc7 kinetochor 93.4 8.9 0.00019 37.9 21.0 81 117-206 208-292 (325)
100 KOG0804|consensus 93.4 7.9 0.00017 41.4 18.2 27 12-38 312-338 (493)
101 KOG0962|consensus 93.2 22 0.00049 42.1 29.2 38 25-62 819-856 (1294)
102 PF06160 EzrA: Septation ring 93.1 14 0.0003 39.4 23.6 108 86-208 317-432 (560)
103 KOG1924|consensus 93.0 1.5 3.3E-05 49.4 13.1 13 54-66 205-217 (1102)
104 KOG0964|consensus 93.0 22 0.00048 41.4 30.8 56 144-199 782-837 (1200)
105 PF08614 ATG16: Autophagy prot 93.0 2.4 5.1E-05 38.9 12.4 34 32-65 67-100 (194)
106 PF06705 SF-assemblin: SF-asse 92.9 8.6 0.00019 36.4 33.6 7 256-262 197-203 (247)
107 PF12325 TMF_TATA_bd: TATA ele 92.9 5 0.00011 35.4 13.7 38 140-177 16-53 (120)
108 KOG0977|consensus 92.8 17 0.00037 39.5 28.7 44 20-68 28-71 (546)
109 PRK11281 hypothetical protein; 92.7 24 0.00052 41.2 25.2 188 114-311 124-329 (1113)
110 PF12325 TMF_TATA_bd: TATA ele 92.7 6.6 0.00014 34.6 15.5 72 23-106 14-85 (120)
111 PF05667 DUF812: Protein of un 92.6 18 0.0004 39.3 22.7 35 32-66 328-362 (594)
112 PF00769 ERM: Ezrin/radixin/mo 92.5 10 0.00023 36.5 17.3 48 49-104 8-55 (246)
113 KOG4593|consensus 92.5 21 0.00046 39.9 30.6 170 85-280 136-317 (716)
114 TIGR01005 eps_transp_fam exopo 92.4 19 0.0004 39.0 22.4 48 159-206 314-361 (754)
115 KOG0996|consensus 92.3 29 0.00063 41.0 33.7 201 86-297 380-598 (1293)
116 PF15066 CAGE1: Cancer-associa 92.3 19 0.00041 38.8 25.6 102 50-174 328-431 (527)
117 PF07111 HCR: Alpha helical co 92.1 24 0.00052 39.6 36.3 121 121-247 334-495 (739)
118 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.1 7.5 0.00016 33.8 19.0 100 89-208 31-130 (132)
119 PF01576 Myosin_tail_1: Myosin 92.0 0.045 9.8E-07 60.4 0.0 104 32-137 208-311 (859)
120 PF06818 Fez1: Fez1; InterPro 91.8 13 0.00028 35.8 18.5 94 187-280 84-184 (202)
121 PF05701 WEMBL: Weak chloropla 91.7 20 0.00044 37.9 36.1 55 224-278 366-420 (522)
122 KOG0933|consensus 91.5 34 0.00074 40.0 31.6 59 183-260 815-873 (1174)
123 KOG0978|consensus 91.4 28 0.0006 39.0 29.5 26 225-250 561-586 (698)
124 PRK11820 hypothetical protein; 91.3 11 0.00023 37.5 15.5 151 65-249 135-287 (288)
125 TIGR03185 DNA_S_dndD DNA sulfu 91.1 25 0.00053 37.8 29.4 22 85-106 205-226 (650)
126 TIGR01843 type_I_hlyD type I s 91.0 16 0.00034 35.5 23.1 24 229-252 245-268 (423)
127 KOG2072|consensus 91.0 35 0.00075 39.3 39.0 31 118-156 670-700 (988)
128 smart00502 BBC B-Box C-termina 90.9 7.2 0.00016 31.3 15.6 83 48-130 9-91 (127)
129 TIGR00255 conserved hypothetic 90.8 8.4 0.00018 38.3 14.3 24 226-249 267-290 (291)
130 PF04111 APG6: Autophagy prote 90.6 4.9 0.00011 40.0 12.4 16 192-207 115-130 (314)
131 PRK10929 putative mechanosensi 90.5 42 0.0009 39.4 29.2 106 21-141 19-132 (1109)
132 PF14915 CCDC144C: CCDC144C pr 90.4 23 0.00049 36.1 27.1 138 57-206 3-153 (305)
133 PF04111 APG6: Autophagy prote 90.2 8.2 0.00018 38.4 13.7 77 86-173 75-168 (314)
134 PF06120 Phage_HK97_TLTM: Tail 90.1 19 0.00041 36.4 16.2 119 24-146 66-190 (301)
135 PF07058 Myosin_HC-like: Myosi 90.1 25 0.00055 36.3 20.8 69 185-253 61-138 (351)
136 PF15035 Rootletin: Ciliary ro 90.1 16 0.00035 34.0 15.5 49 29-77 71-119 (182)
137 PF15254 CCDC14: Coiled-coil d 90.0 36 0.00078 38.8 19.5 29 151-179 505-533 (861)
138 PF10168 Nup88: Nuclear pore c 90.0 27 0.00058 38.8 18.5 35 27-61 538-573 (717)
139 KOG0288|consensus 89.9 20 0.00044 38.1 16.6 69 31-100 5-73 (459)
140 KOG0976|consensus 89.7 45 0.00098 38.6 27.9 211 25-267 263-520 (1265)
141 PF10168 Nup88: Nuclear pore c 89.5 39 0.00084 37.6 25.1 22 186-207 649-670 (717)
142 PF10186 Atg14: UV radiation r 89.3 18 0.0004 33.6 21.0 26 33-58 21-46 (302)
143 KOG4593|consensus 89.3 42 0.00091 37.7 23.4 20 278-297 280-299 (716)
144 PRK01156 chromosome segregatio 89.3 39 0.00084 37.3 34.5 46 19-64 456-501 (895)
145 PF09731 Mitofilin: Mitochondr 89.2 32 0.00068 36.2 23.1 43 108-150 308-351 (582)
146 PRK01156 chromosome segregatio 89.1 40 0.00087 37.2 36.5 65 185-250 418-489 (895)
147 PF13851 GAS: Growth-arrest sp 89.0 20 0.00043 33.6 21.3 112 145-297 60-171 (201)
148 TIGR03017 EpsF chain length de 89.0 27 0.00058 35.0 21.2 35 120-154 284-318 (444)
149 KOG1924|consensus 88.8 1.1 2.4E-05 50.5 7.1 8 324-331 526-533 (1102)
150 PF00769 ERM: Ezrin/radixin/mo 88.4 25 0.00054 33.9 17.1 49 27-75 7-55 (246)
151 PF05911 DUF869: Plant protein 88.3 50 0.0011 37.3 28.4 124 72-208 18-145 (769)
152 COG2433 Uncharacterized conser 88.3 4.8 0.0001 44.3 11.2 83 187-296 426-508 (652)
153 KOG1265|consensus 87.7 63 0.0014 37.8 21.2 114 52-182 1055-1178(1189)
154 PF14988 DUF4515: Domain of un 87.5 26 0.00057 33.2 22.2 25 264-288 158-182 (206)
155 PF06156 DUF972: Protein of un 87.3 4.7 0.0001 34.9 8.6 54 26-79 2-55 (107)
156 PF01576 Myosin_tail_1: Myosin 87.2 0.18 3.9E-06 55.8 0.0 130 31-163 179-308 (859)
157 PRK15422 septal ring assembly 87.2 3.3 7.2E-05 34.7 7.3 41 28-68 7-47 (79)
158 KOG4673|consensus 87.0 62 0.0013 36.9 31.4 19 67-85 523-541 (961)
159 TIGR03007 pepcterm_ChnLen poly 86.7 40 0.00086 34.4 24.0 18 314-331 396-413 (498)
160 PF09728 Taxilin: Myosin-like 86.4 38 0.00082 33.9 29.7 64 29-92 54-117 (309)
161 KOG2751|consensus 85.9 36 0.00078 36.3 15.6 36 30-65 141-176 (447)
162 KOG0978|consensus 85.7 67 0.0015 36.1 25.5 161 71-254 458-625 (698)
163 PF12718 Tropomyosin_1: Tropom 85.5 26 0.00057 31.3 19.3 55 43-105 4-58 (143)
164 KOG4807|consensus 85.4 57 0.0012 35.1 27.8 24 229-252 518-541 (593)
165 PRK15178 Vi polysaccharide exp 85.4 19 0.00041 38.0 13.5 106 129-247 219-338 (434)
166 COG1340 Uncharacterized archae 85.1 47 0.001 33.7 27.5 49 251-299 189-237 (294)
167 PRK13169 DNA replication intia 85.0 7 0.00015 34.2 8.6 53 26-78 2-54 (110)
168 KOG1853|consensus 84.9 48 0.001 33.7 16.8 31 45-75 51-81 (333)
169 TIGR03752 conj_TIGR03752 integ 84.8 14 0.0003 39.6 12.1 42 34-75 61-102 (472)
170 KOG1850|consensus 84.6 55 0.0012 34.2 31.3 61 227-296 254-315 (391)
171 PF15066 CAGE1: Cancer-associa 84.6 65 0.0014 35.0 22.8 60 140-207 362-421 (527)
172 KOG1899|consensus 84.2 80 0.0017 35.7 26.5 45 22-66 101-145 (861)
173 PF12711 Kinesin-relat_1: Kine 83.9 6.5 0.00014 33.3 7.6 61 229-296 23-83 (86)
174 PF15397 DUF4618: Domain of un 83.8 49 0.0011 33.0 27.8 47 26-72 7-57 (258)
175 KOG0963|consensus 83.7 78 0.0017 35.2 28.5 91 189-279 248-341 (629)
176 PF06785 UPF0242: Uncharacteri 83.7 61 0.0013 34.0 16.8 55 227-292 131-185 (401)
177 PF09744 Jnk-SapK_ap_N: JNK_SA 83.6 36 0.00079 31.3 19.0 71 171-264 81-151 (158)
178 PF10481 CENP-F_N: Cenp-F N-te 83.6 56 0.0012 33.4 15.8 33 30-62 16-48 (307)
179 KOG4360|consensus 83.5 76 0.0017 34.9 19.2 21 28-48 162-182 (596)
180 PF07111 HCR: Alpha helical co 82.9 90 0.0019 35.3 34.7 61 229-291 330-391 (739)
181 PF10146 zf-C4H2: Zinc finger- 82.9 48 0.001 32.2 15.2 37 161-198 67-103 (230)
182 KOG4302|consensus 82.5 89 0.0019 35.0 29.7 76 23-98 158-238 (660)
183 TIGR01069 mutS2 MutS2 family p 82.5 34 0.00075 38.1 14.6 57 145-201 534-590 (771)
184 PRK10884 SH3 domain-containing 82.3 23 0.0005 33.7 11.5 30 152-181 137-166 (206)
185 KOG0239|consensus 82.2 88 0.0019 34.8 20.8 10 187-196 245-254 (670)
186 COG2433 Uncharacterized conser 81.9 36 0.00078 37.8 14.1 37 115-152 471-507 (652)
187 PF10211 Ax_dynein_light: Axon 81.8 45 0.00097 31.1 16.5 67 142-208 122-188 (189)
188 PF10211 Ax_dynein_light: Axon 81.8 45 0.00097 31.1 15.3 67 111-178 120-187 (189)
189 COG4026 Uncharacterized protei 81.5 37 0.0008 34.0 12.9 89 43-147 132-220 (290)
190 PRK11519 tyrosine kinase; Prov 81.2 76 0.0017 34.7 16.4 28 34-61 269-296 (719)
191 PF08172 CASP_C: CASP C termin 81.2 2.8 6.1E-05 40.7 5.2 47 19-65 80-126 (248)
192 PLN03188 kinesin-12 family pro 81.0 1.4E+02 0.0029 36.1 25.1 121 75-206 1116-1252(1320)
193 KOG0804|consensus 80.9 88 0.0019 33.9 16.6 39 144-182 418-456 (493)
194 KOG0946|consensus 80.9 1.2E+02 0.0025 35.3 26.3 27 273-299 915-941 (970)
195 TIGR03319 YmdA_YtgF conserved 80.7 85 0.0018 33.6 24.4 14 126-139 77-90 (514)
196 PF11559 ADIP: Afadin- and alp 80.6 39 0.00084 29.6 16.9 39 144-182 77-115 (151)
197 KOG0243|consensus 80.5 1.3E+02 0.0028 35.5 21.8 90 19-113 366-472 (1041)
198 COG0419 SbcC ATPase involved i 80.1 1.1E+02 0.0023 34.4 32.9 8 340-347 459-466 (908)
199 KOG3915|consensus 79.9 24 0.00052 38.3 11.8 41 84-138 501-541 (641)
200 TIGR03752 conj_TIGR03752 integ 79.9 26 0.00056 37.6 12.0 52 24-75 41-95 (472)
201 PF06005 DUF904: Protein of un 79.8 17 0.00036 29.6 8.4 34 34-67 20-53 (72)
202 KOG0018|consensus 79.7 1.4E+02 0.003 35.4 26.5 27 282-308 869-895 (1141)
203 PRK00409 recombination and DNA 79.5 83 0.0018 35.3 16.2 72 85-156 519-593 (782)
204 PF05483 SCP-1: Synaptonemal c 79.5 1.2E+02 0.0026 34.5 31.0 70 138-207 578-664 (786)
205 PRK10884 SH3 domain-containing 79.4 41 0.00088 32.0 12.1 30 145-174 137-166 (206)
206 PF15233 SYCE1: Synaptonemal c 79.0 29 0.00063 31.7 10.4 66 115-196 10-75 (134)
207 PF00170 bZIP_1: bZIP transcri 79.0 7.8 0.00017 29.6 6.0 29 30-58 31-59 (64)
208 PF08172 CASP_C: CASP C termin 78.9 35 0.00076 33.3 11.8 45 161-206 86-130 (248)
209 PRK12704 phosphodiesterase; Pr 78.8 98 0.0021 33.2 24.6 16 124-139 81-96 (520)
210 PF11559 ADIP: Afadin- and alp 78.6 45 0.00098 29.2 15.7 31 230-260 108-138 (151)
211 PRK09841 cryptic autophosphory 78.5 87 0.0019 34.3 15.8 21 46-66 274-294 (726)
212 TIGR01069 mutS2 MutS2 family p 78.5 83 0.0018 35.2 15.8 48 107-154 539-586 (771)
213 COG1842 PspA Phage shock prote 78.5 67 0.0014 31.1 16.9 49 28-76 27-75 (225)
214 KOG0244|consensus 78.4 1.4E+02 0.003 34.7 17.7 31 230-260 579-609 (913)
215 PF04156 IncA: IncA protein; 78.4 50 0.0011 29.5 17.6 41 32-72 81-121 (191)
216 PRK11546 zraP zinc resistance 78.1 13 0.00028 34.0 8.1 62 182-255 53-114 (143)
217 PF14389 Lzipper-MIP1: Leucine 77.4 31 0.00067 28.7 9.5 67 185-253 17-84 (88)
218 PF09304 Cortex-I_coil: Cortex 77.3 52 0.0011 29.1 14.5 91 27-134 11-102 (107)
219 KOG0982|consensus 77.2 1.1E+02 0.0025 33.0 20.8 38 27-64 217-268 (502)
220 PF13094 CENP-Q: CENP-Q, a CEN 77.1 53 0.0011 29.1 13.3 40 116-156 39-78 (160)
221 PF13094 CENP-Q: CENP-Q, a CEN 76.4 55 0.0012 29.0 11.7 61 145-206 25-85 (160)
222 smart00787 Spc7 Spc7 kinetocho 76.4 90 0.0019 31.5 16.0 22 112-133 145-166 (312)
223 PRK00106 hypothetical protein; 76.3 1.2E+02 0.0026 32.9 21.4 11 232-242 273-283 (535)
224 PF10458 Val_tRNA-synt_C: Valy 76.3 5.7 0.00012 30.9 4.6 36 182-217 3-38 (66)
225 PRK15422 septal ring assembly 75.1 45 0.00098 28.2 9.8 56 29-92 22-77 (79)
226 KOG1103|consensus 74.9 1.2E+02 0.0027 32.3 21.7 48 98-145 137-190 (561)
227 PF01442 Apolipoprotein: Apoli 74.8 52 0.0011 27.9 22.5 27 172-198 115-141 (202)
228 PF13514 AAA_27: AAA domain 74.7 1.7E+02 0.0036 33.8 27.8 65 187-255 307-371 (1111)
229 PRK00409 recombination and DNA 74.5 71 0.0015 35.7 14.1 100 93-203 498-597 (782)
230 PF12252 SidE: Dot/Icm substra 74.3 59 0.0013 38.6 13.5 20 83-102 1064-1083(1439)
231 KOG3251|consensus 74.1 44 0.00095 32.6 10.8 119 162-313 11-133 (213)
232 PF09787 Golgin_A5: Golgin sub 74.1 1.2E+02 0.0027 32.0 28.4 23 29-51 113-135 (511)
233 PF05266 DUF724: Protein of un 74.0 80 0.0017 29.7 14.2 30 183-212 159-188 (190)
234 PF14992 TMCO5: TMCO5 family 74.0 1.1E+02 0.0023 31.1 15.3 77 36-121 15-94 (280)
235 TIGR02449 conserved hypothetic 73.7 22 0.00047 28.8 7.4 36 28-63 10-45 (65)
236 PRK13169 DNA replication intia 73.3 12 0.00026 32.7 6.3 44 226-280 11-54 (110)
237 KOG0964|consensus 73.1 2.1E+02 0.0044 34.1 28.1 38 229-270 445-482 (1200)
238 PF14197 Cep57_CLD_2: Centroso 73.1 47 0.001 26.7 9.4 32 37-68 3-34 (69)
239 TIGR02680 conserved hypothetic 72.8 2.1E+02 0.0046 34.1 32.2 43 26-68 735-778 (1353)
240 PF02841 GBP_C: Guanylate-bind 72.5 99 0.0021 30.1 14.2 36 123-158 259-295 (297)
241 PF15619 Lebercilin: Ciliary p 72.5 88 0.0019 29.5 24.7 23 228-250 169-191 (194)
242 KOG0999|consensus 71.6 1.8E+02 0.0039 32.7 27.6 98 22-131 97-197 (772)
243 PF11932 DUF3450: Protein of u 71.4 95 0.0021 29.5 15.4 19 87-105 40-58 (251)
244 PF10224 DUF2205: Predicted co 71.2 19 0.0004 30.1 6.7 42 25-66 16-57 (80)
245 TIGR00219 mreC rod shape-deter 71.2 11 0.00025 36.8 6.4 43 231-280 67-109 (283)
246 PF03962 Mnd1: Mnd1 family; I 71.1 90 0.002 29.1 12.4 23 84-106 105-127 (188)
247 TIGR00634 recN DNA repair prot 71.0 1.5E+02 0.0032 31.5 25.4 22 223-244 322-343 (563)
248 KOG4360|consensus 70.7 1.8E+02 0.0038 32.3 18.1 50 48-97 161-213 (596)
249 KOG1265|consensus 70.4 1.1E+02 0.0024 35.9 14.3 68 75-143 1115-1182(1189)
250 PF07106 TBPIP: Tat binding pr 70.4 33 0.00072 30.6 8.6 58 36-106 76-133 (169)
251 PF06156 DUF972: Protein of un 70.0 17 0.00037 31.5 6.4 47 226-283 11-57 (107)
252 COG4942 Membrane-bound metallo 69.9 1.6E+02 0.0034 31.4 30.1 189 32-254 38-248 (420)
253 PF07798 DUF1640: Protein of u 69.8 88 0.0019 28.5 16.5 77 84-160 75-151 (177)
254 KOG0933|consensus 69.5 2.5E+02 0.0053 33.5 28.2 45 224-268 407-451 (1174)
255 TIGR00219 mreC rod shape-deter 69.2 15 0.00031 36.1 6.6 35 33-67 67-105 (283)
256 PF06632 XRCC4: DNA double-str 69.1 1.3E+02 0.0029 30.8 13.6 69 83-152 131-199 (342)
257 COG3883 Uncharacterized protei 69.0 1.3E+02 0.0029 30.2 23.4 12 120-131 150-161 (265)
258 COG4026 Uncharacterized protei 68.6 64 0.0014 32.4 10.8 85 26-118 136-220 (290)
259 PF10267 Tmemb_cc2: Predicted 68.5 1.6E+02 0.0035 31.0 16.8 51 139-196 268-318 (395)
260 PF03999 MAP65_ASE1: Microtubu 68.2 5.1 0.00011 42.9 3.6 25 278-302 379-403 (619)
261 PF07106 TBPIP: Tat binding pr 67.9 36 0.00079 30.4 8.4 57 185-251 81-137 (169)
262 PRK14127 cell division protein 67.2 10 0.00022 33.2 4.6 12 86-97 89-100 (109)
263 PRK00846 hypothetical protein; 67.1 57 0.0012 27.1 8.7 27 183-209 34-60 (77)
264 PF04012 PspA_IM30: PspA/IM30 66.7 1.1E+02 0.0023 28.2 21.3 49 28-76 26-74 (221)
265 PF05130 FlgN: FlgN protein; 66.7 69 0.0015 26.1 10.5 35 98-132 17-51 (143)
266 PF05103 DivIVA: DivIVA protei 66.6 2.8 6E-05 35.1 1.0 34 27-60 20-53 (131)
267 PF03938 OmpH: Outer membrane 66.1 87 0.0019 27.0 10.9 39 114-152 83-121 (158)
268 PF14988 DUF4515: Domain of un 65.9 1.3E+02 0.0027 28.7 23.4 152 82-255 22-181 (206)
269 PF11932 DUF3450: Protein of u 65.8 1.2E+02 0.0027 28.7 17.3 52 115-174 39-90 (251)
270 PF14282 FlxA: FlxA-like prote 65.8 31 0.00067 29.4 7.1 48 27-74 21-72 (106)
271 KOG0982|consensus 65.3 2.1E+02 0.0045 31.1 20.6 151 115-278 219-383 (502)
272 KOG0579|consensus 65.2 2.7E+02 0.0059 32.4 30.7 36 259-294 973-1010(1187)
273 PF03904 DUF334: Domain of unk 65.0 1.5E+02 0.0033 29.4 15.4 93 33-127 44-140 (230)
274 PLN02939 transferase, transfer 64.9 2.9E+02 0.0062 32.5 25.8 17 12-32 119-135 (977)
275 TIGR01000 bacteriocin_acc bact 64.6 1.7E+02 0.0038 30.0 22.4 29 25-53 90-118 (457)
276 TIGR03017 EpsF chain length de 64.5 1.6E+02 0.0035 29.5 22.5 29 162-190 283-311 (444)
277 KOG0245|consensus 64.3 18 0.00039 42.3 7.0 99 211-309 322-456 (1221)
278 PF00261 Tropomyosin: Tropomyo 63.8 1.3E+02 0.0029 28.4 27.9 15 86-100 40-54 (237)
279 COG4985 ABC-type phosphate tra 62.7 1.2E+02 0.0026 30.6 11.4 65 128-207 174-245 (289)
280 TIGR02894 DNA_bind_RsfA transc 62.6 54 0.0012 30.8 8.6 29 39-67 104-132 (161)
281 KOG1962|consensus 62.6 1.6E+02 0.0035 28.8 12.6 64 134-209 149-212 (216)
282 PRK00286 xseA exodeoxyribonucl 62.5 1.9E+02 0.0041 29.6 17.4 84 118-208 305-390 (438)
283 KOG4403|consensus 62.5 2.4E+02 0.0052 30.9 18.9 20 189-208 308-327 (575)
284 smart00340 HALZ homeobox assoc 62.3 15 0.00032 28.1 4.0 28 25-52 5-32 (44)
285 TIGR01010 BexC_CtrB_KpsE polys 61.4 1.7E+02 0.0038 28.9 16.2 56 87-143 212-267 (362)
286 KOG4196|consensus 61.4 60 0.0013 29.8 8.4 23 225-247 34-57 (135)
287 PRK11519 tyrosine kinase; Prov 61.3 2.6E+02 0.0056 30.8 18.7 18 314-331 407-424 (719)
288 COG3599 DivIVA Cell division i 61.2 1.6E+02 0.0035 28.4 19.3 27 27-53 39-65 (212)
289 PRK13922 rod shape-determining 60.6 28 0.00061 33.2 6.6 36 33-68 70-108 (276)
290 PF03961 DUF342: Protein of un 60.1 53 0.0011 33.8 8.9 15 87-101 332-346 (451)
291 PF04949 Transcrip_act: Transc 60.1 1.6E+02 0.0034 27.9 13.3 88 28-126 62-156 (159)
292 PF08232 Striatin: Striatin fa 60.0 33 0.00071 30.5 6.5 42 27-68 27-68 (134)
293 COG3074 Uncharacterized protei 60.0 50 0.0011 27.8 7.1 38 30-67 9-46 (79)
294 PRK13922 rod shape-determining 59.4 28 0.00061 33.2 6.4 41 230-278 69-109 (276)
295 PLN02372 violaxanthin de-epoxi 59.2 1.7E+02 0.0037 31.5 12.4 40 159-198 408-447 (455)
296 TIGR02231 conserved hypothetic 59.2 1.8E+02 0.0039 30.5 12.7 38 30-67 69-106 (525)
297 PF13870 DUF4201: Domain of un 59.1 1.4E+02 0.003 26.9 21.7 157 41-206 8-175 (177)
298 KOG4809|consensus 59.0 3E+02 0.0065 30.8 19.9 36 33-68 244-279 (654)
299 PRK00083 frr ribosome recyclin 58.8 1.5E+02 0.0032 27.8 10.8 85 12-128 92-179 (185)
300 PRK09841 cryptic autophosphory 58.7 2.9E+02 0.0062 30.5 21.5 18 314-331 407-424 (726)
301 TIGR00496 frr ribosome recycli 58.5 1.6E+02 0.0034 27.4 10.9 86 11-128 82-170 (176)
302 PF07989 Microtub_assoc: Micro 58.3 1E+02 0.0022 25.2 9.2 30 179-208 3-32 (75)
303 PF06120 Phage_HK97_TLTM: Tail 57.7 2.2E+02 0.0048 29.0 24.6 40 160-200 161-200 (301)
304 PLN03229 acetyl-coenzyme A car 57.3 3.5E+02 0.0076 31.1 19.4 62 57-126 433-494 (762)
305 PF03915 AIP3: Actin interacti 57.2 2.6E+02 0.0057 29.6 17.0 101 44-152 211-311 (424)
306 PRK04325 hypothetical protein; 57.1 1E+02 0.0022 25.0 8.4 28 181-208 28-55 (74)
307 KOG0995|consensus 57.1 3.2E+02 0.0068 30.5 31.9 25 262-286 474-498 (581)
308 PF02183 HALZ: Homeobox associ 56.9 41 0.00088 25.2 5.6 36 37-72 3-38 (45)
309 smart00502 BBC B-Box C-termina 56.9 1E+02 0.0022 24.7 17.9 80 92-178 24-103 (127)
310 cd00520 RRF Ribosome recycling 56.9 1.4E+02 0.0029 27.7 10.2 86 11-128 87-175 (179)
311 PRK13729 conjugal transfer pil 56.6 46 0.001 35.8 8.0 13 180-192 108-120 (475)
312 TIGR02473 flagell_FliJ flagell 56.6 1.2E+02 0.0026 25.5 13.1 70 186-261 30-99 (141)
313 smart00338 BRLZ basic region l 56.4 41 0.00088 25.7 5.7 11 55-65 35-45 (65)
314 PF15233 SYCE1: Synaptonemal c 56.3 1.7E+02 0.0036 27.0 16.3 55 86-141 10-64 (134)
315 PF12795 MscS_porin: Mechanose 55.5 1.9E+02 0.004 27.4 21.0 86 114-207 81-174 (240)
316 PF04102 SlyX: SlyX; InterPro 55.5 79 0.0017 25.0 7.4 23 181-203 30-52 (69)
317 PF10506 MCC-bdg_PDZ: PDZ doma 55.4 61 0.0013 26.3 6.7 48 28-75 1-48 (67)
318 KOG0243|consensus 55.3 4.3E+02 0.0092 31.5 28.8 91 107-209 514-605 (1041)
319 PRK04325 hypothetical protein; 55.2 89 0.0019 25.3 7.7 23 181-203 35-57 (74)
320 PF01166 TSC22: TSC-22/dip/bun 55.0 14 0.0003 29.7 3.0 32 37-68 12-43 (59)
321 PRK13428 F0F1 ATP synthase sub 54.9 2.8E+02 0.006 29.1 19.1 96 88-195 59-157 (445)
322 KOG1923|consensus 54.4 33 0.00071 39.0 6.7 16 276-291 223-238 (830)
323 PF15254 CCDC14: Coiled-coil d 54.2 4.1E+02 0.0088 30.9 22.5 15 192-206 538-552 (861)
324 TIGR02449 conserved hypothetic 53.9 1.2E+02 0.0026 24.6 8.2 50 28-77 3-52 (65)
325 PLN02939 transferase, transfer 53.6 4.4E+02 0.0095 31.1 21.4 59 144-207 223-281 (977)
326 KOG3915|consensus 53.6 1.9E+02 0.0041 31.9 11.8 93 17-138 491-583 (641)
327 PRK00295 hypothetical protein; 53.3 1.2E+02 0.0025 24.3 8.6 28 181-208 24-51 (68)
328 PF07407 Seadorna_VP6: Seadorn 53.1 91 0.002 32.8 9.1 83 34-128 34-117 (420)
329 PF07200 Mod_r: Modifier of ru 52.5 1.6E+02 0.0034 25.6 14.0 70 27-96 36-106 (150)
330 PF11221 Med21: Subunit 21 of 52.3 71 0.0015 28.4 7.4 29 20-48 92-120 (144)
331 PF07352 Phage_Mu_Gam: Bacteri 51.6 85 0.0018 27.8 7.7 39 114-152 6-44 (149)
332 PF07352 Phage_Mu_Gam: Bacteri 51.5 92 0.002 27.6 7.9 53 84-136 5-57 (149)
333 COG1842 PspA Phage shock prote 51.5 2.4E+02 0.0051 27.4 22.2 133 144-295 42-188 (225)
334 smart00806 AIP3 Actin interact 51.2 1.6E+02 0.0035 31.5 10.8 113 156-269 80-194 (426)
335 PF09766 FimP: Fms-interacting 50.7 2.9E+02 0.0063 28.2 15.0 76 132-212 83-158 (355)
336 KOG0994|consensus 50.5 5.7E+02 0.012 31.5 21.7 155 28-187 1594-1750(1758)
337 PF07798 DUF1640: Protein of u 50.5 2E+02 0.0043 26.2 21.8 112 72-199 43-154 (177)
338 PF01765 RRF: Ribosome recycli 49.9 2E+02 0.0043 26.0 10.3 84 12-127 74-160 (165)
339 KOG2077|consensus 49.6 97 0.0021 34.8 9.1 20 84-103 324-343 (832)
340 KOG0239|consensus 49.4 4.2E+02 0.0092 29.7 17.8 60 232-292 243-309 (670)
341 PF00170 bZIP_1: bZIP transcri 49.3 88 0.0019 23.9 6.5 20 48-67 28-47 (64)
342 PF05667 DUF812: Protein of un 49.2 4E+02 0.0088 29.4 29.4 48 28-75 317-364 (594)
343 PF13815 Dzip-like_N: Iguana/D 49.2 74 0.0016 27.3 6.8 32 34-65 82-113 (118)
344 COG1382 GimC Prefoldin, chaper 49.0 2E+02 0.0043 25.8 9.8 28 185-212 86-113 (119)
345 PF09311 Rab5-bind: Rabaptin-l 48.9 18 0.00038 33.2 3.2 65 182-272 7-74 (181)
346 PRK14900 valS valyl-tRNA synth 48.5 72 0.0016 36.9 8.4 72 144-218 846-917 (1052)
347 PRK02793 phi X174 lysis protei 48.2 1.4E+02 0.003 24.1 7.7 26 181-206 34-59 (72)
348 PF12329 TMF_DNA_bd: TATA elem 47.9 1.5E+02 0.0032 24.0 9.5 28 180-207 44-71 (74)
349 COG4467 Regulator of replicati 47.9 1.2E+02 0.0026 27.2 7.9 49 27-75 3-51 (114)
350 COG2900 SlyX Uncharacterized p 47.2 1.7E+02 0.0037 24.4 8.5 40 178-217 31-71 (72)
351 PF15619 Lebercilin: Ciliary p 47.1 2.6E+02 0.0055 26.5 24.1 22 47-68 20-41 (194)
352 PRK13729 conjugal transfer pil 46.9 45 0.00097 35.9 6.1 20 86-105 101-120 (475)
353 PRK13428 F0F1 ATP synthase sub 46.2 3.8E+02 0.0081 28.2 15.9 10 269-278 214-223 (445)
354 PF11802 CENP-K: Centromere-as 46.1 3.3E+02 0.0072 27.6 12.6 47 83-135 132-178 (268)
355 PF13870 DUF4201: Domain of un 46.0 2.3E+02 0.0049 25.5 18.5 22 45-66 5-26 (177)
356 KOG4425|consensus 45.8 21 0.00046 39.1 3.6 18 346-363 72-90 (900)
357 PF05103 DivIVA: DivIVA protei 45.6 6 0.00013 33.1 -0.4 43 28-70 28-70 (131)
358 PF03915 AIP3: Actin interacti 45.6 4E+02 0.0087 28.3 17.4 161 31-208 150-324 (424)
359 PF09798 LCD1: DNA damage chec 45.6 1.8E+02 0.004 32.5 10.6 107 242-372 2-116 (654)
360 PF07989 Microtub_assoc: Micro 45.5 1.2E+02 0.0027 24.7 7.2 59 227-288 4-65 (75)
361 PF09744 Jnk-SapK_ap_N: JNK_SA 45.5 2.5E+02 0.0055 25.9 15.4 20 49-68 39-58 (158)
362 PF04977 DivIC: Septum formati 45.4 1.1E+02 0.0024 23.3 6.6 33 34-66 19-51 (80)
363 PF12761 End3: Actin cytoskele 45.4 2.9E+02 0.0064 26.7 11.3 28 224-251 161-188 (195)
364 PF13514 AAA_27: AAA domain 45.3 5.5E+02 0.012 29.8 30.5 112 141-254 802-920 (1111)
365 PF14916 CCDC92: Coiled-coil d 45.0 32 0.00069 27.6 3.6 43 237-279 3-45 (60)
366 PRK10246 exonuclease subunit S 44.9 5.5E+02 0.012 29.8 37.1 14 326-347 499-512 (1047)
367 PF12709 Kinetocho_Slk19: Cent 44.8 73 0.0016 27.3 5.9 18 51-68 47-64 (87)
368 PF07412 Geminin: Geminin; In 44.5 84 0.0018 30.4 7.0 42 33-74 119-160 (200)
369 PF14197 Cep57_CLD_2: Centroso 44.5 1.7E+02 0.0036 23.6 9.5 39 139-177 4-42 (69)
370 PF13874 Nup54: Nucleoporin co 44.4 2.2E+02 0.0048 25.1 9.2 40 19-58 24-63 (141)
371 TIGR02231 conserved hypothetic 44.3 3.5E+02 0.0075 28.4 12.0 19 86-104 75-93 (525)
372 KOG3156|consensus 44.1 3.3E+02 0.0072 26.9 13.1 104 137-252 91-196 (220)
373 PLN02372 violaxanthin de-epoxi 44.1 3.8E+02 0.0081 29.1 12.1 66 87-152 377-444 (455)
374 COG0233 Frr Ribosome recycling 43.6 3.1E+02 0.0067 26.4 10.6 86 10-127 92-180 (187)
375 KOG3091|consensus 43.3 4.9E+02 0.011 28.7 16.0 42 19-67 328-369 (508)
376 COG4467 Regulator of replicati 43.2 50 0.0011 29.6 4.9 45 225-280 10-54 (114)
377 KOG3809|consensus 43.1 4.1E+02 0.0089 29.2 12.3 119 79-205 437-561 (583)
378 PRK14011 prefoldin subunit alp 42.9 2.6E+02 0.0057 25.4 11.9 27 46-72 10-36 (144)
379 PF05010 TACC: Transforming ac 42.4 3.2E+02 0.007 26.3 28.3 84 118-202 69-155 (207)
380 PF03961 DUF342: Protein of un 42.3 1E+02 0.0023 31.7 7.8 19 115-133 331-349 (451)
381 PF12795 MscS_porin: Mechanose 42.1 3E+02 0.0066 25.9 18.3 53 22-74 75-127 (240)
382 KOG1923|consensus 42.1 1.5E+02 0.0032 34.1 9.3 40 253-292 184-229 (830)
383 PF06548 Kinesin-related: Kine 41.8 5E+02 0.011 28.4 26.6 147 43-197 299-469 (488)
384 PRK00888 ftsB cell division pr 41.8 1.2E+02 0.0027 25.9 7.0 36 25-67 27-62 (105)
385 COG3074 Uncharacterized protei 41.6 2E+02 0.0043 24.3 7.8 43 30-72 23-65 (79)
386 PF15372 DUF4600: Domain of un 41.6 2.8E+02 0.006 25.3 9.8 29 29-57 5-33 (129)
387 PF06698 DUF1192: Protein of u 41.4 86 0.0019 25.0 5.5 32 19-50 15-46 (59)
388 PF04576 Zein-binding: Zein-bi 41.4 2.4E+02 0.0052 24.5 14.2 54 43-107 3-56 (94)
389 PRK11546 zraP zinc resistance 41.1 2E+02 0.0044 26.4 8.6 10 22-31 41-50 (143)
390 PF03999 MAP65_ASE1: Microtubu 41.0 9 0.00019 41.1 0.0 139 142-292 144-316 (619)
391 KOG4343|consensus 41.0 29 0.00063 38.2 3.7 36 37-72 293-328 (655)
392 KOG0249|consensus 40.9 6.4E+02 0.014 29.4 19.3 81 86-175 167-258 (916)
393 PRK00846 hypothetical protein; 40.8 2.1E+02 0.0046 23.8 7.9 38 180-217 38-76 (77)
394 PF14931 IFT20: Intraflagellar 40.7 2.6E+02 0.0057 24.8 13.5 31 157-188 90-120 (120)
395 PF05529 Bap31: B-cell recepto 40.7 2.7E+02 0.0059 25.3 9.4 13 186-198 178-190 (192)
396 PF02183 HALZ: Homeobox associ 40.4 1E+02 0.0022 23.1 5.5 33 27-59 7-39 (45)
397 PF09325 Vps5: Vps5 C terminal 40.3 2.9E+02 0.0062 25.1 22.5 185 12-200 11-205 (236)
398 PLN03229 acetyl-coenzyme A car 40.1 6.4E+02 0.014 29.1 21.8 73 115-187 532-623 (762)
399 COG3206 GumC Uncharacterized p 39.9 4.4E+02 0.0095 27.1 14.0 115 22-136 274-391 (458)
400 COG4372 Uncharacterized protei 39.9 5.3E+02 0.011 28.0 31.0 27 34-60 76-102 (499)
401 KOG4797|consensus 39.8 64 0.0014 29.1 5.0 34 35-68 63-96 (123)
402 PRK14474 F0F1 ATP synthase sub 39.8 3.6E+02 0.0078 26.1 18.5 102 88-200 63-165 (250)
403 PF05010 TACC: Transforming ac 39.4 3.6E+02 0.0078 26.0 23.4 39 88-127 68-106 (207)
404 TIGR01000 bacteriocin_acc bact 39.3 4.5E+02 0.0097 27.1 18.5 28 182-209 290-317 (457)
405 PF02841 GBP_C: Guanylate-bind 39.2 3.8E+02 0.0082 26.2 16.7 24 144-167 226-249 (297)
406 PRK04406 hypothetical protein; 38.8 2.2E+02 0.0047 23.3 8.7 28 181-208 30-57 (75)
407 PF00261 Tropomyosin: Tropomyo 38.7 3.5E+02 0.0076 25.7 29.2 44 29-72 5-48 (237)
408 PF04799 Fzo_mitofusin: fzo-li 38.5 1.7E+02 0.0036 27.8 7.8 58 122-179 102-162 (171)
409 PRK00736 hypothetical protein; 38.5 2E+02 0.0043 22.9 7.2 21 184-204 34-54 (68)
410 KOG1916|consensus 38.4 7.1E+02 0.015 29.9 13.9 51 229-284 931-981 (1283)
411 COG3883 Uncharacterized protei 38.2 4.4E+02 0.0094 26.6 20.2 10 87-96 132-141 (265)
412 PF12238 MSA-2c: Merozoite sur 38.1 1.2E+02 0.0025 29.6 6.9 29 179-207 44-72 (205)
413 PF12709 Kinetocho_Slk19: Cent 38.0 2.6E+02 0.0057 24.0 11.8 43 135-177 44-86 (87)
414 PRK02119 hypothetical protein; 37.8 2.2E+02 0.0048 23.1 7.8 25 181-205 35-59 (73)
415 KOG0946|consensus 37.6 7.5E+02 0.016 29.2 21.4 23 103-125 747-769 (970)
416 PF05812 Herpes_BLRF2: Herpesv 37.5 40 0.00087 30.2 3.5 35 184-218 4-38 (118)
417 PF01486 K-box: K-box region; 37.3 2.4E+02 0.0051 23.3 10.0 51 25-75 12-68 (100)
418 PRK04778 septation ring format 37.2 5.6E+02 0.012 27.5 30.8 85 117-208 281-373 (569)
419 PF11802 CENP-K: Centromere-as 37.0 4.6E+02 0.01 26.6 18.5 27 183-209 154-180 (268)
420 KOG0288|consensus 37.0 5.8E+02 0.013 27.7 14.4 43 29-71 24-73 (459)
421 PF02403 Seryl_tRNA_N: Seryl-t 36.9 1.6E+02 0.0034 24.3 6.7 23 185-207 76-98 (108)
422 TIGR00634 recN DNA repair prot 36.8 5.5E+02 0.012 27.4 22.1 46 29-74 158-203 (563)
423 PRK10803 tol-pal system protei 36.7 1.2E+02 0.0027 29.4 7.0 17 50-66 58-74 (263)
424 TIGR02894 DNA_bind_RsfA transc 36.7 1.8E+02 0.004 27.4 7.7 69 23-106 78-149 (161)
425 PRK12704 phosphodiesterase; Pr 36.6 5.8E+02 0.012 27.6 21.6 12 283-294 341-352 (520)
426 PRK00295 hypothetical protein; 36.6 2.2E+02 0.0048 22.7 7.5 36 181-216 31-66 (68)
427 PRK04406 hypothetical protein; 36.4 2.4E+02 0.0052 23.1 8.0 23 181-203 37-59 (75)
428 KOG3990|consensus 36.3 3.1E+02 0.0068 28.1 9.7 41 230-271 225-265 (305)
429 PF15294 Leu_zip: Leucine zipp 36.1 4.8E+02 0.01 26.5 16.0 45 28-72 128-172 (278)
430 PF14992 TMCO5: TMCO5 family 36.0 4.9E+02 0.011 26.5 17.4 28 224-251 110-137 (280)
431 COG1792 MreC Cell shape-determ 35.9 99 0.0022 30.6 6.2 38 31-68 65-105 (284)
432 PF03234 CDC37_N: Cdc37 N term 35.7 3.8E+02 0.0083 25.3 11.0 8 8-15 13-20 (177)
433 KOG1853|consensus 35.7 5.1E+02 0.011 26.7 21.6 23 50-72 24-46 (333)
434 PF03962 Mnd1: Mnd1 family; I 35.6 3.7E+02 0.0081 25.1 11.2 7 167-173 116-122 (188)
435 PF04102 SlyX: SlyX; InterPro 35.6 2.2E+02 0.0048 22.5 7.4 30 180-209 22-51 (69)
436 PLN02678 seryl-tRNA synthetase 35.1 3.5E+02 0.0075 28.8 10.4 33 32-64 33-65 (448)
437 PF14193 DUF4315: Domain of un 35.1 96 0.0021 26.1 5.1 56 144-202 5-60 (83)
438 cd00632 Prefoldin_beta Prefold 35.1 2.6E+02 0.0057 23.2 11.3 83 142-250 8-104 (105)
439 PF02403 Seryl_tRNA_N: Seryl-t 35.0 2.6E+02 0.0056 23.0 9.8 38 31-68 28-65 (108)
440 PF06810 Phage_GP20: Phage min 34.7 3E+02 0.0066 25.0 8.7 32 29-67 17-48 (155)
441 PTZ00266 NIMA-related protein 34.6 8.5E+02 0.018 28.9 14.4 6 384-389 752-757 (1021)
442 TIGR03321 alt_F1F0_F0_B altern 34.6 4.1E+02 0.009 25.3 18.4 101 90-201 65-166 (246)
443 PRK00888 ftsB cell division pr 34.5 87 0.0019 26.8 4.9 33 41-73 29-61 (105)
444 TIGR00237 xseA exodeoxyribonuc 34.4 5.6E+02 0.012 26.7 17.9 35 118-152 300-334 (432)
445 PRK02119 hypothetical protein; 34.3 2.5E+02 0.0055 22.7 8.3 31 179-209 26-56 (73)
446 KOG1830|consensus 34.1 1.1E+02 0.0024 33.1 6.6 46 107-152 24-76 (518)
447 PF12252 SidE: Dot/Icm substra 34.0 9.6E+02 0.021 29.3 21.8 28 231-259 1299-1326(1439)
448 PRK05431 seryl-tRNA synthetase 34.0 3.7E+02 0.0081 28.0 10.3 32 33-64 29-60 (425)
449 cd00176 SPEC Spectrin repeats, 33.9 2.9E+02 0.0062 23.3 20.3 33 28-60 36-68 (213)
450 KOG0432|consensus 33.8 41 0.0009 38.9 3.6 59 185-243 932-992 (995)
451 PF10805 DUF2730: Protein of u 33.7 1.7E+02 0.0037 24.9 6.6 24 226-249 68-91 (106)
452 PF04012 PspA_IM30: PspA/IM30 33.4 3.9E+02 0.0084 24.6 16.8 22 114-135 40-61 (221)
453 KOG1962|consensus 33.2 4.8E+02 0.01 25.6 12.1 14 162-175 194-207 (216)
454 PF12998 ING: Inhibitor of gro 33.0 2.6E+02 0.0056 22.4 8.8 69 223-291 8-79 (105)
455 PF10458 Val_tRNA-synt_C: Valy 32.9 2.3E+02 0.0051 22.0 7.4 15 144-158 8-22 (66)
456 PF06810 Phage_GP20: Phage min 32.8 3.8E+02 0.0083 24.4 10.3 17 51-67 18-34 (155)
457 PF03938 OmpH: Outer membrane 32.7 3.2E+02 0.007 23.5 12.7 102 23-124 20-122 (158)
458 PF02388 FemAB: FemAB family; 32.7 1.6E+02 0.0034 30.2 7.3 16 19-34 155-170 (406)
459 PF14282 FlxA: FlxA-like prote 32.5 3.1E+02 0.0068 23.3 8.5 24 230-253 51-74 (106)
460 PF01486 K-box: K-box region; 32.2 2.9E+02 0.0063 22.8 9.7 23 257-279 77-99 (100)
461 PF00521 DNA_topoisoIV: DNA gy 32.2 2.1E+02 0.0046 29.5 8.2 18 125-142 363-381 (426)
462 PF14362 DUF4407: Domain of un 32.1 4.8E+02 0.01 25.3 18.3 70 187-256 146-215 (301)
463 PF04568 IATP: Mitochondrial A 32.0 1.8E+02 0.0039 25.2 6.5 8 78-85 61-68 (100)
464 PF07058 Myosin_HC-like: Myosi 31.7 6.3E+02 0.014 26.6 17.0 27 34-67 2-28 (351)
465 PF04977 DivIC: Septum formati 31.4 1.2E+02 0.0026 23.1 4.9 36 23-58 15-50 (80)
466 PF05769 DUF837: Protein of un 31.0 4.5E+02 0.0098 24.7 16.6 128 29-164 45-177 (181)
467 PRK07352 F0F1 ATP synthase sub 31.0 4E+02 0.0086 24.0 19.0 96 87-193 76-172 (174)
468 KOG4466|consensus 30.5 6.2E+02 0.013 26.1 13.6 20 139-158 115-134 (291)
469 KOG4787|consensus 30.5 8.8E+02 0.019 27.8 17.8 91 160-255 436-526 (852)
470 KOG0240|consensus 30.5 8.3E+02 0.018 27.5 22.4 22 245-266 562-583 (607)
471 PF02388 FemAB: FemAB family; 30.4 2.8E+02 0.0061 28.4 8.6 39 85-128 245-283 (406)
472 PF06698 DUF1192: Protein of u 30.3 1.2E+02 0.0026 24.2 4.7 30 224-253 22-51 (59)
473 PF12808 Mto2_bdg: Micro-tubul 30.1 91 0.002 24.3 3.9 17 52-68 28-44 (52)
474 KOG4196|consensus 30.1 4.5E+02 0.0098 24.3 14.8 94 23-142 22-119 (135)
475 PF10205 KLRAQ: Predicted coil 30.1 3.9E+02 0.0084 23.6 11.2 32 33-64 6-37 (102)
476 PF13815 Dzip-like_N: Iguana/D 29.9 1.2E+02 0.0026 26.0 5.1 31 41-71 75-105 (118)
477 PRK00736 hypothetical protein; 29.8 2.9E+02 0.0063 22.0 8.4 30 180-209 23-52 (68)
478 PRK14474 F0F1 ATP synthase sub 29.7 5.3E+02 0.011 25.0 15.9 72 114-198 60-131 (250)
479 PF12808 Mto2_bdg: Micro-tubul 29.5 1.5E+02 0.0033 23.1 5.0 40 128-167 7-49 (52)
480 PF14942 Muted: Organelle biog 29.5 4.4E+02 0.0095 24.1 12.2 41 114-154 96-136 (145)
481 KOG4797|consensus 29.4 1.1E+02 0.0024 27.6 4.8 25 44-68 65-89 (123)
482 COG3879 Uncharacterized protei 29.3 3.5E+02 0.0076 27.1 8.7 26 142-167 59-84 (247)
483 PF04859 DUF641: Plant protein 29.3 2.3E+02 0.0049 25.7 6.8 49 136-206 83-131 (131)
484 PLN02678 seryl-tRNA synthetase 29.2 3.1E+02 0.0067 29.2 8.9 60 144-208 44-103 (448)
485 KOG3119|consensus 29.0 1.4E+02 0.003 29.3 6.0 40 34-73 203-242 (269)
486 PF15030 DUF4527: Protein of u 28.2 6.6E+02 0.014 25.7 13.3 78 24-124 8-85 (277)
487 PF14712 Snapin_Pallidin: Snap 28.2 3.1E+02 0.0068 21.9 10.0 28 160-195 63-90 (92)
488 PF12777 MT: Microtubule-bindi 28.0 3E+02 0.0064 27.6 8.2 35 144-178 239-273 (344)
489 KOG3771|consensus 27.6 8.3E+02 0.018 26.6 20.4 96 27-129 32-127 (460)
490 COG4694 Uncharacterized protei 27.5 9.7E+02 0.021 27.4 13.3 70 124-194 423-498 (758)
491 PF10498 IFT57: Intra-flagella 27.5 7.1E+02 0.015 25.8 13.9 110 24-134 237-351 (359)
492 PF14645 Chibby: Chibby family 27.1 1.7E+02 0.0037 25.7 5.6 22 28-49 74-95 (116)
493 PF07544 Med9: RNA polymerase 27.1 1.7E+02 0.0037 23.9 5.3 31 24-54 51-81 (83)
494 PF07820 TraC: TraC-like prote 26.9 1.6E+02 0.0034 25.6 5.2 32 232-263 4-35 (92)
495 PRK05431 seryl-tRNA synthetase 26.9 3.7E+02 0.008 28.0 8.9 60 148-207 29-97 (425)
496 PRK00286 xseA exodeoxyribonucl 26.6 7.1E+02 0.015 25.5 17.8 128 26-159 261-391 (438)
497 PF05597 Phasin: Poly(hydroxya 26.6 4.8E+02 0.01 23.5 16.3 116 55-170 12-132 (132)
498 KOG1937|consensus 26.5 9.1E+02 0.02 26.7 21.0 160 34-207 246-420 (521)
499 PRK02793 phi X174 lysis protei 26.3 3.5E+02 0.0075 21.8 8.2 61 143-218 4-64 (72)
500 PF04420 CHD5: CHD5-like prote 26.3 3.4E+02 0.0074 24.6 7.5 61 186-260 36-96 (161)
No 1
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=100.00 E-value=1.2e-96 Score=710.60 Aligned_cols=305 Identities=73% Similarity=0.976 Sum_probs=297.8
Q ss_pred CCCccccccccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15959 2 ADSASESDSNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEE 81 (393)
Q Consensus 2 ~ds~sesd~ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEE 81 (393)
|||+||||+ ||+. |+|+|++|+++++.++++|+++|++||.++++++.|+++|+++|+.||.++|.|+++||||||
T Consensus 1 ~~s~sesd~---d~~~-~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE 76 (310)
T PF09755_consen 1 ADSASESDT---DGAG-MTSSSSATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEE 76 (310)
T ss_pred CCccccccc---cCCC-CCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999874 4543 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15959 82 FISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQN 161 (393)
Q Consensus 82 fItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~ 161 (393)
||||+|+|||++|+++|++|+++||+|||||||+|+|||.+|++||++||++|++||||+||+|+++|++|++++.+++.
T Consensus 77 ~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~ 156 (310)
T PF09755_consen 77 FISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQE 156 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC----CCCCccchhHhHHHHHH
Q psy15959 162 NLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMN----NGDTASNLSTHIHSLRS 237 (393)
Q Consensus 162 ~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~----~~dt~~~l~~~i~~Lr~ 237 (393)
.|++|++|||+|||+||+|||+|||||||||++|+++||.||.+|++|+|+|+||+|++ ++||++++++||..||.
T Consensus 157 ~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~ 236 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQ 236 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999975 58899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhccHHH
Q psy15959 238 EVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEMEEERHYNEI 310 (393)
Q Consensus 238 Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsesesslE~~eer~fn~~ 310 (393)
||++||++|..+++++.+||.+|+.++++||+||+|||++|++|+|||+|||||||+||||||||||||||++
T Consensus 237 EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lsesEsslE~ddEr~fne~ 309 (310)
T PF09755_consen 237 EVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSESESSLEMDDERQFNEM 309 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG2129|consensus
Probab=100.00 E-value=4.3e-93 Score=707.63 Aligned_cols=303 Identities=64% Similarity=0.792 Sum_probs=298.0
Q ss_pred cccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy15959 10 SNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89 (393)
Q Consensus 10 ~ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~K 89 (393)
.||.+||. |+|+||+.+++|.+||.+|+++|.|||.++++++.+++.+|++|+-|+.++|.||++||||||||+|+|+|
T Consensus 29 ~ss~~GG~-~~p~sP~~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlk 107 (552)
T KOG2129|consen 29 HSSHSGGG-HEPFSPSPGESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLK 107 (552)
T ss_pred ccCCCCCC-CCCCCCCCHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHH
Confidence 45778887 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q psy15959 90 KIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRRE 169 (393)
Q Consensus 90 KL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrE 169 (393)
||++|+++|++|+..||.|||||||.|.+||.||++||+.||+.||+||||+||||+++|++|+++...+|..|+|||+|
T Consensus 108 kiqal~keketla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre 187 (552)
T KOG2129|consen 108 KIQALFKEKETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRRE 187 (552)
T ss_pred HHHHhhccccccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-----CCCCccchhHhHHHHHHHHHHHHH
Q psy15959 170 KVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMN-----NGDTASNLSTHIHSLRSEVMRLRN 244 (393)
Q Consensus 170 KVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~-----~~dt~~~l~~~i~~Lr~Ev~~Lr~ 244 (393)
+|+|||+||||||+|||+|||+||+|++|||.||.+||||||+|++|+||. .||+|+.+..||+.|+.||.|||.
T Consensus 188 ~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt 267 (552)
T KOG2129|consen 188 AVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRT 267 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985 388999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhccHHHhhc
Q psy15959 245 QLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEMEEERHYNEIAHS 313 (393)
Q Consensus 245 ~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsesesslE~~eer~fn~~~~~ 313 (393)
.|..+|.++.+||.+|.+||+++|+||.|||+||++||||||||||+||||||++|||||||||+++..
T Consensus 268 ~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~ 336 (552)
T KOG2129|consen 268 YLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDF 336 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999887
No 3
>KOG2129|consensus
Probab=99.97 E-value=1.2e-28 Score=247.24 Aligned_cols=181 Identities=37% Similarity=0.452 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHhHHHHHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA----------KAEQEEEFISNTLMKKIQAL 94 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~----------kaEqEEEfItNtL~KKL~~L 94 (393)
+..|+|+..|+-+|++|+-|+. +.+.+++++-|+|...-.....+|++ .||.|||||||.|-+|+++|
T Consensus 64 ~elet~k~kcki~qeenr~l~~--Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~qL 141 (552)
T KOG2129|consen 64 GELETLKGKCKIMQEENRPLLL--ASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLKQL 141 (552)
T ss_pred hhHHhhhhHHHHHHhcCchhhh--hhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHHHH
Confidence 3568999999999999999995 57777888888887776666666655 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH--------------HHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15959 95 KKEKETLAHHYEQEEEFLTNDLSRK--------------LNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQ 160 (393)
Q Consensus 95 kkEKe~L~~~~EqEEE~LTN~L~KK--------------L~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q 160 (393)
++||..|++.+|||.||++|+|++| |.||++|+|+|||+||||||+|||+|||+|++|++||+.+|
T Consensus 142 r~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq 221 (552)
T KOG2129|consen 142 RHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQ 221 (552)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 48899999999999999999999999999999999987554
Q ss_pred --------------------------------------------------------hhHHHHHHhHhHHHHhHHHHHHHH
Q psy15959 161 --------------------------------------------------------NNLEQLRREKVELENTLEQEQEAL 184 (393)
Q Consensus 161 --------------------------------------------------------~~L~qLrrEKVeLEn~LEqEQE~L 184 (393)
++++|++.|+++++..++++|+.|
T Consensus 222 ~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL 301 (552)
T KOG2129|consen 222 KKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKL 301 (552)
T ss_pred HHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 368999999999999999999999
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhhc
Q psy15959 185 VNKLWKR--MDKLEAEKRILQIKLD 207 (393)
Q Consensus 185 VNkLqKr--mdkLe~EKr~LQ~~Le 207 (393)
+|.|.+| |-++..|++..++-++
T Consensus 302 ~~e~erRealcr~lsEsesslemde 326 (552)
T KOG2129|consen 302 INELERREALCRMLSESESSLEMDE 326 (552)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999 9999888887766554
No 4
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=99.96 E-value=1.4e-26 Score=224.75 Aligned_cols=179 Identities=41% Similarity=0.558 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q psy15959 49 ETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKY 128 (393)
Q Consensus 49 e~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv 128 (393)
+.++.++.+|+++|++||........+ +..|.-.+.+|+..-+.++.++|+|||||+|+|+|||++|.+||.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~--------~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe 94 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKAR--------CKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKE 94 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999876544444 356777789999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 129 RLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 129 ~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
+|...|++|.|||+|.|+++| .||+.||++||++|++|||++||+|++++++|+.++..++..|+
T Consensus 95 ~L~~~~e~EEE~ltn~L~rkl--------------~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le- 159 (310)
T PF09755_consen 95 TLALKYEQEEEFLTNDLSRKL--------------NQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELE- 159 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 999999999999999999985 67799999999999999999999999999999999988886665
Q ss_pred CCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHH
Q psy15959 209 PVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKL 278 (393)
Q Consensus 209 ~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl 278 (393)
+||.|-..|.++|..-|.-...++.+-.. .+-.++..||.+|
T Consensus 160 -------------------------~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~---~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 160 -------------------------RLRREKVDLENTLEQEQEALVNRLWKQMD---KLEAEKRRLQEKL 201 (310)
T ss_pred -------------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 58899999999999888766665544333 3345666666664
No 5
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.69 E-value=0.00089 Score=70.88 Aligned_cols=98 Identities=24% Similarity=0.383 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEF 111 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~ 111 (393)
+..+.|.+.|..|+.+...++.++..|+.++...+.....+..+.+ .+....+.|..|++.|..+++
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k--------el~~~~e~l~~E~~~L~~q~~----- 216 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK--------ELTESSEELKEERESLKEQLA----- 216 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444455555555555555555555555555555544444433322 122233334444444333321
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Q psy15959 112 LTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLM 146 (393)
Q Consensus 112 LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~ 146 (393)
.+..+|.+|..+...|..+. .|.+.++.++.
T Consensus 217 ---e~~~ri~~LEedi~~l~qk~-~E~e~~~~~lk 247 (546)
T PF07888_consen 217 ---EARQRIRELEEDIKTLTQKE-KEQEKELDKLK 247 (546)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 23445555555555555444 44444444444
No 6
>KOG4673|consensus
Probab=98.34 E-value=0.00075 Score=73.35 Aligned_cols=226 Identities=23% Similarity=0.272 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~E 106 (393)
+++|..||..|....--+-.|.+.++...++|.++.. |.|.+ .+-+||..+.+.+-
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela---------------------~~l~~---DeLaEkdE~I~~lm 459 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELA---------------------AALLK---DELAEKDEIINQLM 459 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------------------Hhhhh---HHHHHHHHHHHHHH
Confidence 5788888888887777776777777776666665432 22222 12234555555555
Q ss_pred HHHHHhHHHHHH---HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHhHhHHHHhH
Q psy15959 107 QEEEFLTNDLSR---KLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQ------NNLEQLRREKVELENTL 177 (393)
Q Consensus 107 qEEE~LTN~L~K---KL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q------~~L~qLrrEKVeLEn~L 177 (393)
.|-|-|...-.. -|.+|+ +-+.|-|-|+.|+.++|.+|..|...+. +..+++.+|-|.--++.
T Consensus 460 ~EGEkLSK~ql~qs~iIkKLR--------Ak~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae 531 (961)
T KOG4673|consen 460 AEGEKLSKKQLAQSAIIKKLR--------AKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAE 531 (961)
T ss_pred HHHHHhHHHHHHHHHHHHHHH--------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 555544432111 112222 1233566777777777777777654332 34555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 178 EQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKM 257 (393)
Q Consensus 178 EqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~ 257 (393)
-.=|+.-...++-.|+.|++..+.+|..++..-+|-. -...+. -..+|.+-.-|=.++.++-+....+.
T Consensus 532 ~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq---------k~nrlk--Qdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 532 LTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ---------KENRLK--QDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH---------HHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666677888999999999999998886433210 000000 11333443444444444444455555
Q ss_pred HHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy15959 258 ERYVKDEKNVREENLRLQRKLQREVERREALCRHLSES 295 (393)
Q Consensus 258 ~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lses 295 (393)
.+.+.-|..+|.||-.|||+|+-==-||+.|.-+++++
T Consensus 601 q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~T 638 (961)
T KOG4673|consen 601 QQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPET 638 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 55667788999999999999998777888877666654
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.33 E-value=0.0082 Score=64.71 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
.+..+++.|+.+...+..++......+..+..+...++
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~ 715 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS 715 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444444444444443333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.26 E-value=0.011 Score=63.64 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLK 45 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk 45 (393)
+.+...+..|..+...++
T Consensus 187 ~el~~~~~~L~~q~~~l~ 204 (1164)
T TIGR02169 187 ERLDLIIDEKRQQLERLR 204 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.24 E-value=0.012 Score=62.92 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
.++...++.++.+...+..++..+...+..+..+...++..
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 713 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666665555555555555555555443
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.18 E-value=0.0016 Score=70.54 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=36.1
Q ss_pred HHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccchhh
Q psy15959 251 QEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEM 301 (393)
Q Consensus 251 ~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsesesslE~ 301 (393)
++.............+++++|.+|-.-|.-|--=-..|-.+|.+.---+|+
T Consensus 583 ~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei 633 (697)
T PF09726_consen 583 KESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEI 633 (697)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555667778899999999988888866666677777776666665
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.15 E-value=0.015 Score=65.38 Aligned_cols=163 Identities=29% Similarity=0.408 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQ------EEEFISNTLMKKIQALKKEKETL 101 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEq------EEEfItNtL~KKL~~LkkEKe~L 101 (393)
.++..++..+......+..++...+..+..+......++...-.+...++. ..+-..+.+..++..+..+...
T Consensus 670 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 748 (1163)
T COG1196 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEE- 748 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 346677777777777777777777777777777777777654444443221 1111112223333333222222
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHhHhHHH
Q psy15959 102 AHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEA-------ETDAKQNNLEQLRREKVELE 174 (393)
Q Consensus 102 ~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLea-------Ek~~~q~~L~qLrrEKVeLE 174 (393)
|...+..++.+...++..+..-++.+ ++|...++.+.. ....++..+..++.....++
T Consensus 749 --------------~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1163)
T COG1196 749 --------------LEEELEELQERLEELEEELESLEEAL-AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALE 813 (1163)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433 455555544443 33445556666667777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 175 NTLEQEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 175 n~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
..++..+... ++|+.++..+..+...++.+++
T Consensus 814 ~~~~~~~~~~-~~~~~ei~~l~~~~~~~~~~~~ 845 (1163)
T COG1196 814 RELESLEQRR-ERLEQEIEELEEEIEELEEKLD 845 (1163)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776 7778888887777777777665
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.06 E-value=0.022 Score=64.19 Aligned_cols=64 Identities=31% Similarity=0.489 Sum_probs=40.6
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQ 179 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEq 179 (393)
.+...+..+......++..++...... +.|..+|..++.+...++.+++.++.+-..++..++.
T Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 860 (1163)
T COG1196 797 ELEEELEEAERRLDALERELESLEQRR-ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEE 860 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445555666666666666666666665 6777777777777666666666666666655555544
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.04 E-value=0.013 Score=55.61 Aligned_cols=252 Identities=22% Similarity=0.312 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQ--------LRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKE 99 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R--------~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe 99 (393)
..|-.||-.|+++|+.|..++..++.+ -..+..++..+|.....+... -..|.-.++.++.+.+
T Consensus 14 a~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~e--------ka~l~~e~~~l~~e~~ 85 (312)
T PF00038_consen 14 ASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKE--------KARLELEIDNLKEELE 85 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHH--------hhHHhhhhhhHHHHHH
Confidence 356778889999999999888888776 233667777777654433321 1234444556666666
Q ss_pred HHHHHHHHHHHHh------HHHHHHHHHHHhHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHh
Q psy15959 100 TLAHHYEQEEEFL------TNDLSRKLNQLTEEKYRLEQTI---EQEQERVVNKLMRKIEKLEAETD-AKQNNLEQLRRE 169 (393)
Q Consensus 100 ~L~~~~EqEEE~L------TN~L~KKL~qL~~EKv~LE~~L---EqEQE~lVNkL~KkiekLeaEk~-~~q~~L~qLrrE 169 (393)
++..+|+.+.... .+.|.+-+...-..+++|++.+ ..|..|+..--...|..|+.... ......+. .-
T Consensus 86 ~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~--~~ 163 (312)
T PF00038_consen 86 DLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ--FR 163 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecc--cc
Confidence 6666665542221 1233334444444445554432 23333433333333333322110 00000010 11
Q ss_pred HhHHHHhHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCC-CCCCCCC-CCCCccchhHhHHHHHHHHHHHH
Q psy15959 170 KVELENTLE---QEQEALVNKLWKRMDKLEAEKR-ILQIKLDQPVSDP-SSPHDMN-NGDTASNLSTHIHSLRSEVMRLR 243 (393)
Q Consensus 170 KVeLEn~LE---qEQE~LVNkLqKrmdkLe~EKr-~LQ~~Leq~vS~~-~SP~~~~-~~dt~~~l~~~i~~Lr~Ev~~Lr 243 (393)
+.+|.+.|. .+-+.++.+-+..++....-+- .++.......+.- ....++. .......+.+.|..|+..+..|.
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence 333444433 2445555555555554443321 1221111100000 0000000 00012345667777777777788
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 244 NQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALC 289 (393)
Q Consensus 244 ~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~ 289 (393)
+++..++..+......|-.....+..+-..++..++.=+.-...|+
T Consensus 244 ~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 244 RQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887777777776666665544433333333
No 14
>KOG0161|consensus
Probab=97.91 E-value=0.038 Score=65.93 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=8.7
Q ss_pred HHHHHHHhHHHHHHHHhHH
Q psy15959 117 SRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 117 ~KKL~qL~~EKv~LE~~LE 135 (393)
...+++|.++|..||..+.
T Consensus 977 ~e~~~kL~kekk~lEe~~~ 995 (1930)
T KOG0161|consen 977 DENISKLSKEKKELEERIR 995 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 15
>KOG0612|consensus
Probab=97.86 E-value=0.04 Score=63.14 Aligned_cols=267 Identities=25% Similarity=0.350 Sum_probs=140.9
Q ss_pred ccccCCCCcCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHhHHHH
Q psy15959 16 VALMMPPSPVTREQLQ-------KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA-KAEQEEEFISNTL 87 (393)
Q Consensus 16 ~~~~~p~s~~~~e~~~-------~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~-kaEqEEEfItNtL 87 (393)
...|++++++...+-. ..++.+.+.++.|...++..+.+...|+.+-++|.+...+... ++.++++-+ +.|
T Consensus 435 ~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~-~~l 513 (1317)
T KOG0612|consen 435 TLQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKK-RKL 513 (1317)
T ss_pred chhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHH
Confidence 3346777766552221 2233444666677777777777888888666666665544443 555555543 445
Q ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------HHHHHHHhHHHHHHHHHH
Q psy15959 88 MKKIQALKKEKETLAHH---------------------------------------------YEQEEEFLTNDLSRKLNQ 122 (393)
Q Consensus 88 ~KKL~~LkkEKe~L~~~---------------------------------------------~EqEEE~LTN~L~KKL~q 122 (393)
...+.++..+.+++... ++++.+ -++.+.-++..
T Consensus 514 ~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e-~~~~~~d~l~~ 592 (1317)
T KOG0612|consen 514 EALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE-ENRDLEDKLSL 592 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh-ccccHHHHHHH
Confidence 55555555555444221 112111 22223333333
Q ss_pred HhHHHHHHHHh---HHHHHH----------HHHHHHHHHHHHHHHHHHhhhh---hHHHHHHhHhHHHHhHHH-----HH
Q psy15959 123 LTEEKYRLEQT---IEQEQE----------RVVNKLMRKIEKLEAETDAKQN---NLEQLRREKVELENTLEQ-----EQ 181 (393)
Q Consensus 123 L~~EKv~LE~~---LEqEQE----------~lVNkL~KkiekLeaEk~~~q~---~L~qLrrEKVeLEn~LEq-----EQ 181 (393)
|+..|..|-.. +-.+.+ -++..+...|.-|+....++.. ++..|+++..+.-+..|. .-
T Consensus 593 le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~ 672 (1317)
T KOG0612|consen 593 LEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKL 672 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222111 111111 3344445555444444333222 222344444333332222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HH-hhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 182 EALVNKLWKRMDKLEAEKRIL-------QI-KLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEH 253 (393)
Q Consensus 182 E~LVNkLqKrmdkLe~EKr~L-------Q~-~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~ 253 (393)
++=+.-++.++.++.+|-+.+ |- .+.+-+++-.++| ..+.++...+-.|+.-|++-+..++.
T Consensus 673 e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~lseek~ar--------~k~e~~~~~i~~e~e~L~~d~~~~~~-- 742 (1317)
T KOG0612|consen 673 ERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKLSEEKSAR--------EKAENLLLEIEAELEYLSNDYKQSQE-- 742 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccHH--------HHHHHHHHHHHHHHHHHhhhhhhhcc--
Confidence 222333455556666666665 11 1334455555655 34567777788899999999988882
Q ss_pred HHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy15959 254 TEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESES 297 (393)
Q Consensus 254 ~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lseses 297 (393)
+..+--..-.....+=+.|+..|++|+.-+-.+-+.|+ +.+
T Consensus 743 --~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-sq~ 783 (1317)
T KOG0612|consen 743 --KLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-SQE 783 (1317)
T ss_pred --chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-hHH
Confidence 22222233445567778999999999999999999998 443
No 16
>KOG0161|consensus
Probab=97.82 E-value=0.13 Score=61.72 Aligned_cols=150 Identities=29% Similarity=0.407 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15959 87 LMKKIQALKKEKETLAHHYE------QEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQ 160 (393)
Q Consensus 87 L~KKL~~LkkEKe~L~~~~E------qEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q 160 (393)
+-..+..|.++|-.+..... ++++-=.+.|.+...+|-..-.+|+..|++|....+ .+.|...+|+.+....+
T Consensus 976 ~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~-e~Ek~~rkle~el~~~~ 1054 (1930)
T KOG0161|consen 976 LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRM-ELEKAKRKLEGELKDLQ 1054 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 44455555555544433332 334444567777788888888888888998887666 56677888888887777
Q ss_pred hhHHHHHHhHhHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccc
Q psy15959 161 NNLEQLRREKVELENTLEQ-------------EQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASN 227 (393)
Q Consensus 161 ~~L~qLrrEKVeLEn~LEq-------------EQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~ 227 (393)
+.++-+...|-+|.+.|.. +...+|+.|+|++..|.+.+..|+..|+.. ..+-..
T Consensus 1055 e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~e------------r~~r~K 1122 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAE------------RASRAK 1122 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 7777677777666665542 334678888999999999888888888740 012233
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH
Q psy15959 228 LSTHIHSLRSEVMRLRNQLANT 249 (393)
Q Consensus 228 l~~~i~~Lr~Ev~~Lr~~l~~~ 249 (393)
+..--.-|..|+..|+..|...
T Consensus 1123 ~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1123 AERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544
No 17
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.82 E-value=0.033 Score=52.91 Aligned_cols=149 Identities=26% Similarity=0.367 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------------HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15959 86 TLMKKIQALKKEKETLAHHYEQEEEFLTN----------------DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKI 149 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~EqEEE~LTN----------------~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~Kki 149 (393)
.|..+|..|+.+..-+...+++|-.-|.. .|...|..++.+-..+....-++-+ .....++
T Consensus 121 ~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e---~~y~~k~ 197 (312)
T PF00038_consen 121 DLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELE---EWYQSKL 197 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhh---hhccccc
Confidence 45556666666666665555554443332 3344444444444433333333322 2223344
Q ss_pred HHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchh
Q psy15959 150 EKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLS 229 (393)
Q Consensus 150 ekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~ 229 (393)
+.+..........+..++.|-.. ....++.|+.+++.|...+..|+..+.. +-..+.
T Consensus 198 ~~l~~~~~~~~~~~~~~~~E~~~--------~r~~~~~l~~el~~l~~~~~~Le~~l~~---------------le~~~~ 254 (312)
T PF00038_consen 198 EELRQQSEKSSEELESAKEELKE--------LRRQIQSLQAELESLRAKNASLERQLRE---------------LEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred ccccccccccccccchhHhHHHH--------HHhhhhHhhhhhhccccchhhhhhhHHH---------------HHHHHH
Confidence 44444443334445555444433 3445677777888888777777777652 222334
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 230 THIHSLRSEVMRLRNQLANTQQEHTEKMERY 260 (393)
Q Consensus 230 ~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~ 260 (393)
.....+...|..|...|..+..++..++..|
T Consensus 255 ~~~~~~~~~i~~le~el~~l~~~~~~~~~ey 285 (312)
T PF00038_consen 255 EEREEYQAEIAELEEELAELREEMARQLREY 285 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666555
No 18
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.81 E-value=0.027 Score=60.58 Aligned_cols=173 Identities=25% Similarity=0.335 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 30 LQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKA----EQEEEFISNTLMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 30 ~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~ka----EqEEEfItNtL~KKL~~LkkEKe~L~~~~ 105 (393)
++.|+..+-+++..|+.+.+....++..|...+..|+.......... -.|.| ..|...+..|+++++.|+.++
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E---~~Lq~E~~~L~kElE~L~~ql 103 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVE---QQLQAEAEHLRKELESLEEQL 103 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777888888888877775543322110 01122 356677778888888888776
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhhhhHHHHHH
Q psy15959 106 EQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIE-----------------KLEAETDAKQNNLEQLRR 168 (393)
Q Consensus 106 EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~Kkie-----------------kLeaEk~~~q~~L~qLrr 168 (393)
+.--+ --..|.+-......--.+||..|+.-++...+ ..+-++ +|......+|....+|-.
T Consensus 104 qaqv~-~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D-~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltn 181 (617)
T PF15070_consen 104 QAQVE-NNEQLSRLNQEQEERLAELEEELERLQEQQED-RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTN 181 (617)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 53111 01122222222222223455555555554442 222222 222333445667788889
Q ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 169 EKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 169 EKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
+|-+|.++|..|| +++.-|.+++..|+.+...+..++..
T Consensus 182 e~~elt~~lq~Eq-~~~keL~~kl~~l~~~l~~~~e~le~ 220 (617)
T PF15070_consen 182 ENMELTSALQSEQ-HVKKELQKKLGELQEKLHNLKEKLEL 220 (617)
T ss_pred hhhHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987 45568999999999999998888874
No 19
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.79 E-value=0.12 Score=58.74 Aligned_cols=240 Identities=21% Similarity=0.323 Sum_probs=115.5
Q ss_pred ccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15959 16 VALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALK 95 (393)
Q Consensus 16 ~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~Lk 95 (393)
.+|-+|....+-++|..+++.+......+..+.+.....++........++.........++ ....++..|+
T Consensus 591 ~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ 662 (1201)
T PF12128_consen 591 SAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELK--------QAEQDLQRLK 662 (1201)
T ss_pred hhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHH
Confidence 34556656667777777777777776666655444444444444444444444333333322 2344566666
Q ss_pred HHHHHHHHHHHHHHHHhHH-------HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhH-
Q psy15959 96 KEKETLAHHYEQEEEFLTN-------DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDA----KQNNL- 163 (393)
Q Consensus 96 kEKe~L~~~~EqEEE~LTN-------~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~----~q~~L- 163 (393)
.+...+..+.+++-+--.. .|...|.++..++..+...++...-.+-+.+..+...+.++... ....+
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~ 742 (1201)
T PF12128_consen 663 NEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIA 742 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655544443333 33344455555555555555444433333333333333333321 12222
Q ss_pred ---HHHHHhHhHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCccchhHhH
Q psy15959 164 ---EQLRREKVELENTLEQEQE------ALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDM--NNGDTASNLSTHI 232 (393)
Q Consensus 164 ---~qLrrEKVeLEn~LEqEQE------~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~--~~~dt~~~l~~~i 232 (393)
.+...++-+|+..+.+|.. ..+..|.+++..|+.+.......=.- |. -..+. ...+....+..+.
T Consensus 743 ~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~-V~---eY~~~~~~~~~~~~~~~~~~ 818 (1201)
T PF12128_consen 743 AAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAE-VI---EYEDWLQEEWDKVDELREEK 818 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHH-HH---HHHHHHHHHHHhhhhhhhhh
Confidence 2233345555555555443 26777777777777666654432110 00 00000 0000112233345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q psy15959 233 HSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNV 267 (393)
Q Consensus 233 ~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~ 267 (393)
..|..++..+++++...+++...+...|-..-..+
T Consensus 819 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 853 (1201)
T PF12128_consen 819 PELEEQLRDLEQELQELEQELNQLQKEVKQRRKEL 853 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555554444444
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=97.77 E-value=0.089 Score=56.65 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTL 177 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~L 177 (393)
.+.+.+..++.........+.+++.+.-++...|
T Consensus 367 ~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 367 ELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555444444333
No 21
>PRK11637 AmiB activator; Provisional
Probab=97.76 E-value=0.058 Score=54.26 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~E 106 (393)
.++++.+++.++++...+..++...+...+.++.++..+......+..++..=+.-| +.+.++|..++.+...+..+++
T Consensus 42 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i-~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 42 ASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTL-NQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888777777777777777777777666655544444332222222 4445555555555555555544
Q ss_pred H
Q psy15959 107 Q 107 (393)
Q Consensus 107 q 107 (393)
+
T Consensus 121 ~ 121 (428)
T PRK11637 121 A 121 (428)
T ss_pred H
Confidence 3
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=0.048 Score=62.23 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=22.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHh
Q psy15959 228 LSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREEN 271 (393)
Q Consensus 228 l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN 271 (393)
+.+....|.+++..|..++..++.+..+ ..|-.-+...|...
T Consensus 1066 l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~ 1107 (1311)
T TIGR00606 1066 IKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMM 1107 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHH
Confidence 4444555556666666666666666644 34444444444443
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.67 E-value=0.022 Score=62.75 Aligned_cols=166 Identities=24% Similarity=0.309 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 31 QKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEE 110 (393)
Q Consensus 31 ~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE 110 (393)
+.+++.++.+|..|+.+++.-...+.+...+++..-..-++-......|+-.=...+..-+..++-+...+...++
T Consensus 2 q~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~---- 77 (775)
T PF10174_consen 2 QAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQ---- 77 (775)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH----
Confidence 4578889999999999999888888888887766332222222333333333334455555555555554444333
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHH
Q psy15959 111 FLTNDLSRKLNQLTEEKYRLEQTIEQEQE-----RVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALV 185 (393)
Q Consensus 111 ~LTN~L~KKL~qL~~EKv~LE~~LEqEQE-----~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LV 185 (393)
.|+-+| ..+.+...|-..++..+. +.+.+...++..|-+|....+.++++|+..=. +-+..+
T Consensus 78 ----~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE--------~~q~~~ 144 (775)
T PF10174_consen 78 ----ALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLE--------ELQLRI 144 (775)
T ss_pred ----HHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 345555 555555555554444332 12555666777777777777777777775333 334556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLDQPVSDP 213 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Leq~vS~~ 213 (393)
.+++.-+++...+.+.|+..|+..+.++
T Consensus 145 e~~q~~l~~~~eei~kL~e~L~~~g~~~ 172 (775)
T PF10174_consen 145 ETQQQTLDKADEEIEKLQEMLQSKGLSA 172 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 7889999999999999999997654444
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.55 E-value=0.22 Score=55.19 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCC----------CCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLDQPVSD----------PSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTE 255 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Leq~vS~----------~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~ 255 (393)
.++++.+..+......||..|..-.+. -.|...- ..+-...+...+...|.++..|..++..++.
T Consensus 468 e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K-~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~---- 542 (775)
T PF10174_consen 468 ETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEK-KDSEIERLEIELEKKREKHEKLEKQLEKLRA---- 542 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccch-hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHh----
Confidence 577888888888888888777542111 1111110 1111233334444444555555554444221
Q ss_pred HHHHhHHHHhHHHHHhHHH---HHHHHHHHHHHHHHHHhhhhcccchh
Q psy15959 256 KMERYVKDEKNVREENLRL---QRKLQREVERREALCRHLSESESSLE 300 (393)
Q Consensus 256 k~~~~~~ee~~~reeN~rl---~~kl~~E~erreal~r~lsesesslE 300 (393)
-..|..+...+..++.+. -.+-+-||+|...+-+..-..-.++|
T Consensus 543 -~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke 589 (775)
T PF10174_consen 543 -NAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKE 589 (775)
T ss_pred -CHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 123334444444444433 44567888888876665544444443
No 25
>PRK11637 AmiB activator; Provisional
Probab=97.48 E-value=0.15 Score=51.43 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTS 69 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~s 69 (393)
.++++..|+.++++...++.++......++.+..++..+....
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555555555555555555555444433
No 26
>KOG0996|consensus
Probab=97.45 E-value=0.093 Score=60.19 Aligned_cols=206 Identities=20% Similarity=0.327 Sum_probs=101.8
Q ss_pred cCccc-cCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15959 14 DGVAL-MMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQ 92 (393)
Q Consensus 14 ~g~~~-~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~ 92 (393)
+|..+ +.+-|+.+-+.+...+.......+++..++..+..++..|......|+.....+.+.+-..-+ ..+.|-+.|.
T Consensus 766 mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~-~~~~l~~~i~ 844 (1293)
T KOG0996|consen 766 MGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAE-LIEYLESQIA 844 (1293)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33344 556677777777777777666666666655555566666665555555433222222221111 1233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHh
Q psy15959 93 ALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLE-QTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKV 171 (393)
Q Consensus 93 ~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE-~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKV 171 (393)
++...- +... -+. --.+.|++.|+.+.+|-.++. .... ...+..|+ .+++.+..+|+
T Consensus 845 ~~E~~~--~k~~--~d~-~~l~~~~~~ie~l~kE~e~~qe~~~K---k~~i~~lq--------------~~i~~i~~e~~ 902 (1293)
T KOG0996|consen 845 ELEAAV--LKKV--VDK-KRLKELEEQIEELKKEVEELQEKAAK---KARIKELQ--------------NKIDEIGGEKV 902 (1293)
T ss_pred HHHHHh--hhcc--CcH-HHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHH--------------HHHHHhhchhh
Confidence 333320 0000 000 001233344444444443331 1111 12222333 33344444444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC-CCCccchhHhHHHHHHHHHHHHHHHHHHH
Q psy15959 172 ELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNN-GDTASNLSTHIHSLRSEVMRLRNQLANTQ 250 (393)
Q Consensus 172 eLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~-~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q 250 (393)
. =|..=|-++..||++|+++.+.+.-.+. .|++.+-. ...-.++...|..++.|+..|..++....
T Consensus 903 q-------~qk~kv~~~~~~~~~l~~~i~k~~~~i~------~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~ 969 (1293)
T KOG0996|consen 903 Q-------AQKDKVEKINEQLDKLEADIAKLTVAIK------TSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLE 969 (1293)
T ss_pred H-------HhHHHHHHHHHHHHHHHHHHHHhHHHHh------cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3 3445566788999999999999887776 34443221 11234566677777777777777666655
Q ss_pred HHHHH
Q psy15959 251 QEHTE 255 (393)
Q Consensus 251 ~e~~~ 255 (393)
.-..+
T Consensus 970 ~k~~E 974 (1293)
T KOG0996|consen 970 EKAAE 974 (1293)
T ss_pred HHHHH
Confidence 43333
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.39 E-value=0.2 Score=50.90 Aligned_cols=51 Identities=25% Similarity=0.267 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHhHHHHHHHHhHH
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTND------LSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~------L~KKL~qL~~EKv~LE~~LE 135 (393)
+.|.+.++.+..+...+..+..+=++-|.|. +...|..+..++..++..++
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~ 272 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIE 272 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555443 34444445555544444443
No 28
>KOG4643|consensus
Probab=97.35 E-value=0.35 Score=55.18 Aligned_cols=84 Identities=25% Similarity=0.343 Sum_probs=45.0
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHH--HHHHHHHhHHHHHHHH
Q psy15959 23 SPVTREQLQKRIESLQQQNRVLKVELETYKLQLRA---------LQEENKNLRQTSVNIQAK--AEQEEEFISNTLMKKI 91 (393)
Q Consensus 23 s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~---------LqeEnr~LR~~sv~iq~k--aEqEEEfItNtL~KKL 91 (393)
-.++-+-|+.|++.|.+.|+||-.+-++++.++.. +.-+|-++++....|+.. +.| --+..|+-.+
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr---~kteeL~eEn 331 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDR---HKTEELHEEN 331 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHH
Confidence 34555779999999999999987665555544443 444555555544433321 111 1122344444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15959 92 QALKKEKETLAHHYEQEE 109 (393)
Q Consensus 92 ~~LkkEKe~L~~~~EqEE 109 (393)
..|+-.++.|-..|+-++
T Consensus 332 stLq~q~eqL~~~~ellq 349 (1195)
T KOG4643|consen 332 STLQVQKEQLDGQMELLQ 349 (1195)
T ss_pred HHHHHHHHHhhhhhhHhh
Confidence 444445555544444433
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.32 E-value=0.52 Score=54.11 Aligned_cols=239 Identities=13% Similarity=0.209 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhH------------HHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFIS------------NTLMKKIQALK 95 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfIt------------NtL~KKL~~Lk 95 (393)
.+|..-+.+++.+...++.+.......+..++.....++.....+........+.|. ..+...+..+.
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 667666677766666666666555555555555555555555555554444444443 22333333333
Q ss_pred HHHHH-------HHHHHHHH------------------H--HHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHH-------
Q psy15959 96 KEKET-------LAHHYEQE------------------E--EFLTNDLSRKLNQLTEEKYRLEQTIEQEQERV------- 141 (393)
Q Consensus 96 kEKe~-------L~~~~EqE------------------E--E~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~l------- 141 (393)
.+... +..-++.. + .-+.+.|..++..+......++..++...+.+
T Consensus 653 ~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~ 732 (1311)
T TIGR00606 653 KQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLA 732 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 22211 11112211 1 24556666666666555555555555443321
Q ss_pred -----HHHH-HHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q psy15959 142 -----VNKL-MRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEAL------------VNKLWKRMDKLEAEKRILQ 203 (393)
Q Consensus 142 -----VNkL-~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~L------------VNkLqKrmdkLe~EKr~LQ 203 (393)
++++ .+.+..++.+...+..++..+..+.-+++..|+.-...+ +.++.+++..++.....|.
T Consensus 733 ~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~ 812 (1311)
T TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQA 812 (1311)
T ss_pred hhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 244444555555555555555555555555555433322 3444555555555555555
Q ss_pred HhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHhHHHHHhHHHHH
Q psy15959 204 IKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTE---KMERYVKDEKNVREENLRLQR 276 (393)
Q Consensus 204 ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~---k~~~~~~ee~~~reeN~rl~~ 276 (393)
..+....+ ..+...+...|..+..++..|++.+...+.+... ++...-..+..++.+.+.+..
T Consensus 813 ~~l~~~~~----------~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~ 878 (1311)
T TIGR00606 813 AKLQGSDL----------DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878 (1311)
T ss_pred HHhccccc----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54442111 1255667777777777777776666665544333 222232224444555444444
No 30
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.30 E-value=0.0082 Score=60.12 Aligned_cols=151 Identities=25% Similarity=0.279 Sum_probs=97.7
Q ss_pred ccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15959 13 MDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQ 92 (393)
Q Consensus 13 ~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~ 92 (393)
.+|...+.|.+ ....|..-+....++|..|+.+++.++.++..++.+++.||......+... ++--..+..
T Consensus 55 ~~~d~~~~~~~--~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~--~~~~~~~~~----- 125 (319)
T PF09789_consen 55 GFGDPSIPPEK--ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD--EGIGARHFP----- 125 (319)
T ss_pred ccCCccCCccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh--ccccccccc-----
Confidence 34555444544 446777888999999999999999999999999999999998766654433 222223322
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH----------HHhHHHHHHHHHHHHHHH---HHHHHHHHHhh
Q psy15959 93 ALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRL----------EQTIEQEQERVVNKLMRK---IEKLEAETDAK 159 (393)
Q Consensus 93 ~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~L----------E~~LEqEQE~lVNkL~Kk---iekLeaEk~~~ 159 (393)
.|+++|..++|. -..-...|.+-+..+-.||.++ ..+|-+|..+++|-=..+ ||.|-.|.+-+
T Consensus 126 ---~ere~lV~qLEk-~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL 201 (319)
T PF09789_consen 126 ---HEREDLVEQLEK-LREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYL 201 (319)
T ss_pred ---hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Confidence 555555555543 1111233444555555555555 245556666666554444 67888888888
Q ss_pred hhhHHHHHHhHhHHHHh
Q psy15959 160 QNNLEQLRREKVELENT 176 (393)
Q Consensus 160 q~~L~qLrrEKVeLEn~ 176 (393)
++.|.++..|+--+-++
T Consensus 202 ~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 202 KERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777665543
No 31
>KOG0250|consensus
Probab=97.23 E-value=0.17 Score=57.53 Aligned_cols=177 Identities=20% Similarity=0.304 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQL-------RALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKET 100 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~-------k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~ 100 (393)
..|+.+++..+..++.++..+-...+.+ +.-.+|+..+|+........+.+.++-| +.-...|++++.+...
T Consensus 298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~-~~~~n~i~~~k~~~d~ 376 (1074)
T KOG0250|consen 298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEI-REIENSIRKLKKEVDR 376 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4556666666666666664443333333 3334556666666666666666665544 4556678888888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHH
Q psy15959 101 LAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQE 180 (393)
Q Consensus 101 L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqE 180 (393)
|...+...++.+.|.+...+.+...+...|+.+.|.=++ +++.|..+++.+..+....++++.-...+...|.+++++=
T Consensus 377 l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~-~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 377 LEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE-QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888899999888888888888888876666 7788888888888877777888888888888888888877
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHhh
Q psy15959 181 QEAL----------VNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 181 QE~L----------VNkLqKrmdkLe~EKr~LQ~~L 206 (393)
++.| |+..+..|..|-.+..+=-...
T Consensus 456 ~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f 491 (1074)
T KOG0250|consen 456 SEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRF 491 (1074)
T ss_pred HHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcC
Confidence 7655 5666777777766665544443
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=97.23 E-value=0.43 Score=51.28 Aligned_cols=28 Identities=7% Similarity=0.275 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLR 56 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k 56 (393)
.|...++.|+.+...++.+++.+....+
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~ 483 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELR 483 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444333
No 33
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.22 E-value=0.21 Score=47.48 Aligned_cols=182 Identities=29% Similarity=0.291 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQ 107 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~Eq 107 (393)
++|..-...|..+|..|+..+++.---...|.+++-.||.....+| .++.+-..|+.|.++|-.-+-
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q------------qal~~aK~l~eEledLk~~~~- 77 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ------------QALQKAKALEEELEDLKTLAK- 77 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH-
Confidence 4444444555555555555555555555555555555555444443 222233334444444322110
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHH
Q psy15959 108 EEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNK 187 (393)
Q Consensus 108 EEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNk 187 (393)
.=|---+.|+..-.++-+|.-.|...++ +|+-.-.+|-++..-++.+..+|-.++..|-..+ +.+-.
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~--------~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql-----~~~e~ 144 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIE--------TLQEENGKLLAERDGLKKRSKELATEKATLQRQL-----CEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH-----HHHHH
Confidence 0111123444444444444443333322 4444444555555555556666666666666544 33334
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHH
Q psy15959 188 LWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQ 250 (393)
Q Consensus 188 LqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q 250 (393)
|--+.+.+-.++-.....|.. +-..+.+-++.||.|+++|..+|..++
T Consensus 145 l~~~~da~l~e~t~~i~eL~~---------------~ieEy~~~teeLR~e~s~LEeql~q~~ 192 (193)
T PF14662_consen 145 LICQRDAILSERTQQIEELKK---------------TIEEYRSITEELRLEKSRLEEQLSQMQ 192 (193)
T ss_pred HHHHHHHHHHHHHhhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444455555444433333321 223456677889999999999887654
No 34
>KOG0612|consensus
Probab=97.21 E-value=0.12 Score=59.61 Aligned_cols=31 Identities=35% Similarity=0.317 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLDQPVSDPSSP 216 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP 216 (393)
|+|.+.-+.+..+...||..|++-.+..-++
T Consensus 745 ~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~ 775 (1317)
T KOG0612|consen 745 NELRRSKDQLITEVLKLQSMLEQEISKRLSL 775 (1317)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555667777888888888888754444333
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=97.18 E-value=0.49 Score=51.13 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEE 81 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEE 81 (393)
+.|...++.+..+...|..+++.++.+...+....+. ......++.++++-++
T Consensus 471 ~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~-~~~l~~l~~~~~~l~~ 523 (880)
T PRK02224 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDRIERLEERREDLEE 523 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4566777777777777777776666666655554332 3333344444444444
No 36
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.17 E-value=0.23 Score=47.18 Aligned_cols=141 Identities=30% Similarity=0.468 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15959 30 LQKRIESLQQQNRVLKVELETYKLQLRAL----------QEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKE 99 (393)
Q Consensus 30 ~~~ri~sLqqenr~lk~ele~~k~R~k~L----------qeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe 99 (393)
|+.-|+...+.|..|..++..++...+++ .+|+..||..+..+ ||+ .+.|+..-.++.+|.-
T Consensus 27 L~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~l------EE~--~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 27 LQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSL------EEE--NRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH--HHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444 44555555544443 222 2556666666666666
Q ss_pred HHHHHHH--HHHHHh----HHHHHHHHHHHhHHHHHHHHhH-HHHH-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy15959 100 TLAHHYE--QEEEFL----TNDLSRKLNQLTEEKYRLEQTI-EQEQ-----ERVVNKLMRKIEKLEAETDAKQNNLEQLR 167 (393)
Q Consensus 100 ~L~~~~E--qEEE~L----TN~L~KKL~qL~~EKv~LE~~L-EqEQ-----E~lVNkL~KkiekLeaEk~~~q~~L~qLr 167 (393)
.|...++ ||+-.- +..|.++..+|..++..|-.++ +-|- +.+++.-.++|+.|..-...+..-...||
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR 178 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELR 178 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 6665554 222211 1367888899988999888888 5443 46666777777777655555556667778
Q ss_pred HhHhHHHHhHH
Q psy15959 168 REKVELENTLE 178 (393)
Q Consensus 168 rEKVeLEn~LE 178 (393)
.||-.||..|-
T Consensus 179 ~e~s~LEeql~ 189 (193)
T PF14662_consen 179 LEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHHHHH
Confidence 88888877664
No 37
>KOG0250|consensus
Probab=97.15 E-value=0.75 Score=52.68 Aligned_cols=160 Identities=21% Similarity=0.350 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q psy15959 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDT 224 (393)
Q Consensus 145 L~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt 224 (393)
+.+...+++.+....+....+++.+...|+.++....+..-|.+++++++++.+...|+...+
T Consensus 349 ~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve----------------- 411 (1074)
T KOG0250|consen 349 LRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE----------------- 411 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-----------------
Confidence 344445556666666777777777777777777777777777777777777766555554333
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhh
Q psy15959 225 ASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEMEEE 304 (393)
Q Consensus 225 ~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsesesslE~~ee 304 (393)
.+..-+..||.|...++..+...+.++ -+++.+=..|+++++.-.+=..+|..+.+.--+.--
T Consensus 412 --k~e~~~~~L~~e~~~~~~~~~~~~ee~-----------~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG---- 474 (1074)
T KOG0250|consen 412 --KLEEQINSLREELNEVKEKAKEEEEEK-----------EHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG---- 474 (1074)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc----
Confidence 122223333333333333333332222 235566677888888877777777777665444321
Q ss_pred hccHHHhhccccccCCCCCCCCCCCCCCCCCCCCC
Q psy15959 305 RHYNEIAHSMRLVGSSPSSSRPLSPGASMLTTKEP 339 (393)
Q Consensus 305 r~fn~~~~~~r~~~~~~~~~~~~~p~~~~~~~~~~ 339 (393)
.+|-+++.....-. +-.-..|+-|=+.|-|-..|
T Consensus 475 ~~m~~lL~~I~r~~-~~f~~~P~GPlG~~Vtl~~~ 508 (1074)
T KOG0250|consen 475 PNMPQLLRAIERRK-RRFQTPPKGPLGKYVTLKEP 508 (1074)
T ss_pred hhhHHHHHHHHHHH-hcCCCCCCCCccceeEecCc
Confidence 44555555532111 12246677776666666555
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.14 E-value=0.52 Score=50.60 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHh---HHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA---KAEQEEEFI---SNTLMKKIQALKKEKET 100 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~---kaEqEEEfI---tNtL~KKL~~LkkEKe~ 100 (393)
+++|.+....|.+++..|+.+++.+.......++++..|+.....+.. .+..|-+-+ -..+..+|.+|..+..+
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555555555544444444444444432221111 111111111 12345566666666666
Q ss_pred HHHHH
Q psy15959 101 LAHHY 105 (393)
Q Consensus 101 L~~~~ 105 (393)
|..+.
T Consensus 232 l~qk~ 236 (546)
T PF07888_consen 232 LTQKE 236 (546)
T ss_pred HHHHH
Confidence 65554
No 39
>KOG1029|consensus
Probab=97.08 E-value=0.76 Score=51.64 Aligned_cols=86 Identities=27% Similarity=0.281 Sum_probs=52.2
Q ss_pred hhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CCCCC-C----ccchhHhH
Q psy15959 160 QNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHD--MNNGD-T----ASNLSTHI 232 (393)
Q Consensus 160 q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~--~~~~d-t----~~~l~~~i 232 (393)
|-+|+=.|.--.+|-|....|||.||- |-.+...|+.|...|+.++.+. |-+- +.-+- | -+.+...+
T Consensus 408 qRqlewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qql-----s~kl~Dvr~~~tt~kt~ie~~~~q~ 481 (1118)
T KOG1029|consen 408 QRQLEWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQL-----SGKLQDVRVDITTQKTEIEEVTKQR 481 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----hhhhhhheeccchHHHHHHHhhhHH
Confidence 334444455556888999999999986 7778888888888888776551 1111 11000 1 12344455
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15959 233 HSLRSEVMRLRNQLANTQQ 251 (393)
Q Consensus 233 ~~Lr~Ev~~Lr~~l~~~q~ 251 (393)
...+.|+..|.++|..+|+
T Consensus 482 e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666666665553
No 40
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.06 E-value=0.11 Score=52.07 Aligned_cols=125 Identities=23% Similarity=0.356 Sum_probs=79.4
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 22 PSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETL 101 (393)
Q Consensus 22 ~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L 101 (393)
...+..+.|+.++..|+++|..||.|...++.-...+.+....|-..-|+=...|=+.--.|+.-|-+|......--+.+
T Consensus 157 ~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEI 236 (306)
T PF04849_consen 157 QKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEI 236 (306)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577899999999999999999998888877777777777666555444444444444555555555555443322222
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 102 AHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 102 ~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
..=+-+ .=+|++|+.++.-|+.+|-+.|....+..- .|...+..|
T Consensus 237 t~Llsq-----ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~-~L~aEL~el 281 (306)
T PF04849_consen 237 TSLLSQ-----IVDLQQRCKQLAAENEELQQHLQASKESQR-QLQAELQEL 281 (306)
T ss_pred HHHHHH-----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 111110 126778888888888888888776665443 344444444
No 41
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.04 E-value=0.93 Score=51.82 Aligned_cols=171 Identities=19% Similarity=0.289 Sum_probs=76.0
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhH----HHHhHHHHHHHHHHHHHHHHHH
Q psy15959 119 KLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE----LENTLEQEQEALVNKLWKRMDK 194 (393)
Q Consensus 119 KL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVe----LEn~LEqEQE~LVNkLqKrmdk 194 (393)
.+..|..-..+++..++.-...+-+.+.+++..+.++....++.+.+++....+ ++..+.++-......+.-+...
T Consensus 367 ~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 446 (1201)
T PF12128_consen 367 QLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQ 446 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555666666666655554445444444333333 3333333334455555566666
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHH
Q psy15959 195 LEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRL 274 (393)
Q Consensus 195 Le~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl 274 (393)
+..+.-.+...+..+. .+|-... .-..+..-+...+.++....+.+..++.++..-...+-.-+.++ -.+
T Consensus 447 ~~~~l~~l~~~~~~~~---~~~e~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l----~~~ 516 (1201)
T PF12128_consen 447 LKSELAELKQQLKNPQ---YTEEEKE---QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEEL----RQA 516 (1201)
T ss_pred HHHHHHHHHHHHhCcC---CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 6666666655554311 1111000 00112223333333333344444444433333222222222222 223
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccch
Q psy15959 275 QRKLQREVERREALCRHLSESESSL 299 (393)
Q Consensus 275 ~~kl~~E~erreal~r~lsesessl 299 (393)
++.+..=-.++..|-+.|+-...||
T Consensus 517 ~~~~~~~~~~~~~l~~~L~p~~gSL 541 (1201)
T PF12128_consen 517 RRELEELRAQIAELQRQLDPQKGSL 541 (1201)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcH
Confidence 3344444556677777777666554
No 42
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.95 E-value=0.5 Score=52.45 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~ 105 (393)
..+.+|.++....-..-..+.-|+.+|-. +||.-..+|..--|--|.-|..+++++-....+.+..|+.++
T Consensus 24 ~e~~~lk~~l~~~~~~~~~~e~r~~hld~---aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l 94 (769)
T PF05911_consen 24 AEAASLKQQLEAATQQKLALEDRVSHLDG---ALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKL 94 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhH---HHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444433333222334444544443 333333444443344455688888888888888777776655
No 43
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.93 E-value=0.3 Score=49.12 Aligned_cols=97 Identities=25% Similarity=0.373 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 85 NTLMKKIQALKKEKETLA----------HHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEA 154 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~----------~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLea 154 (393)
..|.+||..|..|...|- ..||..|..|+++--+.|......-..|...|..-.|... +-+..|..|-+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~-rQQEEIt~Lls 241 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENR-RQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 556666666665554442 2445555555555555555555555555544444444433 44455555555
Q ss_pred HHHhhhhhHHHHHHhHhHHHHhHHHHHH
Q psy15959 155 ETDAKQNNLEQLRREKVELENTLEQEQE 182 (393)
Q Consensus 155 Ek~~~q~~L~qLrrEKVeLEn~LEqEQE 182 (393)
+...+|.++.++-.|+.+|-+.|....+
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske 269 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKE 269 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555555555555555555554444433
No 44
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.89 E-value=0.25 Score=42.83 Aligned_cols=73 Identities=26% Similarity=0.292 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 31 QKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHH 104 (393)
Q Consensus 31 ~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~ 104 (393)
...+.+|+.+...++...+.+..++..++++++.....+...+.+||+|=--=+. ..+.|.+|+.+-..+...
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~-~~~~L~~lr~e~~~~~~~ 74 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAE-DIKELQQLREELQELQQE 74 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999997553333 367777777765554433
No 45
>PRK03918 chromosome segregation protein; Provisional
Probab=96.88 E-value=0.87 Score=48.97 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEE 61 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeE 61 (393)
+.+...++++..+...++.++..+......++.+
T Consensus 196 ~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~ 229 (880)
T PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKE 229 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554444444444444433
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.82 Score=47.79 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQE 108 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqE 108 (393)
+.++.|+.+......-+.+...+...++.+..++..+..+....+.. -..+.++|..+...+..|..+-...
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~--------l~~~~~~I~~~~~~l~~l~~q~r~q 113 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD--------LKKLRKQIADLNARLNALEVQEREQ 113 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444445555555554444443333332 1346666777766666665554333
Q ss_pred HHHhH
Q psy15959 109 EEFLT 113 (393)
Q Consensus 109 EE~LT 113 (393)
..+|+
T Consensus 114 r~~La 118 (420)
T COG4942 114 RRRLA 118 (420)
T ss_pred HHHHH
Confidence 33443
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.79 E-value=1.8 Score=51.24 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHH
Q psy15959 86 TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LE 135 (393)
.|..++..|+++++......+..++++ .+..++..+.....+|...++
T Consensus 318 ELe~rL~kLEkQaEkA~kyleL~ee~l--r~q~ei~~l~~~LeELee~Le 365 (1486)
T PRK04863 318 ELNEAESDLEQDYQAASDHLNLVQTAL--RQQEKIERYQADLEELEERLE 365 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333211 223344444444444444443
No 48
>KOG0971|consensus
Probab=96.73 E-value=1.6 Score=49.82 Aligned_cols=192 Identities=24% Similarity=0.358 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKL---------------QLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQA 93 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~---------------R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~ 93 (393)
.|+..++++++-+..|..+++.+|. ..+.|.+.|..||.+.|+|.--- .++-.+-.+|.|.+..
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDls-A~ek~d~qK~~kelE~ 407 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLS-ASEKQDHQKLQKELEK 407 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHH
Confidence 3444444444444444444544443 45667777788888777775432 2333444566666666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHh
Q psy15959 94 LKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ--ERVVNKLMRKIEKLEAETDAKQNNLEQLRREKV 171 (393)
Q Consensus 94 LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQ--E~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKV 171 (393)
.+.|...|....| .|+++++++-.--.+|--++..-- |.||..|..+ +..+.++...|..+-.
T Consensus 408 k~sE~~eL~r~kE--------~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdk-------nlnlEekVklLeetv~ 472 (1243)
T KOG0971|consen 408 KNSELEELRRQKE--------RLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDK-------NLNLEEKVKLLEETVG 472 (1243)
T ss_pred HhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhh-------ccCHHHHHHHHHHHHH
Confidence 6665555544333 244444444443334433333332 3444443332 1234444555555444
Q ss_pred HHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHH
Q psy15959 172 ELENTLEQE-------QEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRN 244 (393)
Q Consensus 172 eLEn~LEqE-------QE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~ 244 (393)
+||- |+.= +--++--|.+.||.+..-++.++.+.+.. ..|.-+..--|...|.=|+.|-.
T Consensus 473 dlEa-lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aa------------qet~yDrdqTI~KfRelva~Lqd 539 (1243)
T KOG0971|consen 473 DLEA-LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAA------------QETVYDRDQTIKKFRELVAHLQD 539 (1243)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 4442 1111 11234457788888877777777665421 12333344456666666666666
Q ss_pred HHHHH
Q psy15959 245 QLANT 249 (393)
Q Consensus 245 ~l~~~ 249 (393)
+|...
T Consensus 540 qlqe~ 544 (1243)
T KOG0971|consen 540 QLQEL 544 (1243)
T ss_pred HHHHH
Confidence 55544
No 49
>KOG4674|consensus
Probab=96.71 E-value=2.3 Score=51.33 Aligned_cols=112 Identities=24% Similarity=0.357 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLE 164 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~ 164 (393)
|.|.-.|.++..++..+-..... -.-+.-.|.+--..++.+|..|.+.++ ++..+|+.|..+...+..+|.
T Consensus 83 s~l~~~L~~~~~~~~~l~~~~~~-~~~~~~~l~~~~se~~~qkr~l~~~le--------~~~~ele~l~~~n~~l~~ql~ 153 (1822)
T KOG4674|consen 83 SDLRNELEQLSSERSNLSWEIDA-LKLENSQLRRAKSELQEQKRQLMELLE--------RQKAELEALESENKDLNDQLK 153 (1822)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555444332211 000112233444555555555555555 667788999999999999999
Q ss_pred HHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 165 QLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 165 qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
-+++-+.+++..+..=+..-|+ ++.+.+.|..|+..|+...
T Consensus 154 ss~~~~~e~e~r~~e~~s~~vs-~q~k~~rl~QEksll~s~~ 194 (1822)
T KOG4674|consen 154 SSTKTLSELEARLQETQSEDVS-SQLKEERLEQEKSLLESEN 194 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999999999988654
No 50
>KOG0971|consensus
Probab=96.71 E-value=1.7 Score=49.71 Aligned_cols=96 Identities=30% Similarity=0.474 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCc--cchhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 176 TLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTA--SNLSTHIHSLRSEVMRLRNQLANTQQEH 253 (393)
Q Consensus 176 ~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~--~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~ 253 (393)
+|.+|-|. |+.|+|.|+.+...|...++..+|+.+- +++. -.|.-.=.+||.=+.|||...+...+.+
T Consensus 329 sLQ~eve~----lkEr~deletdlEILKaEmeekG~~~~~------~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~ 398 (1243)
T KOG0971|consen 329 SLQQEVEA----LKERVDELETDLEILKAEMEEKGSDGQA------ASSYQFKQLEQQNARLKDALVRLRDLSASEKQDH 398 (1243)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCcc------cchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 45555444 5788899999999988888866554321 1111 1133333445555555555444333333
Q ss_pred HHHHHHhHHHHhHHHHHhHHHHH---HHHHHHHHH
Q psy15959 254 TEKMERYVKDEKNVREENLRLQR---KLQREVERR 285 (393)
Q Consensus 254 ~~k~~~~~~ee~~~reeN~rl~~---kl~~E~err 285 (393)
. +...|.--.+.||-.|.+ +|.++++--
T Consensus 399 q----K~~kelE~k~sE~~eL~r~kE~Lsr~~d~a 429 (1243)
T KOG0971|consen 399 Q----KLQKELEKKNSELEELRRQKERLSRELDQA 429 (1243)
T ss_pred H----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 2 233333333455544433 344444433
No 51
>KOG1029|consensus
Probab=96.64 E-value=1.7 Score=49.01 Aligned_cols=99 Identities=23% Similarity=0.329 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q psy15959 146 MRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLW--KRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGD 223 (393)
Q Consensus 146 ~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLq--KrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~d 223 (393)
...|+.|.++...+|.+|-+|--||..|.-.|-+=|-...-+=+ ..|.++...|..+...|. |
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ik---------------d 549 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIK---------------D 549 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHH---------------H
Confidence 44566777777778888888888888888887776655443322 334444444444444443 2
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 224 TASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMER 259 (393)
Q Consensus 224 t~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~ 259 (393)
-...|+..+..=-+|+..+.+++..+...++.+.-+
T Consensus 550 qldelskE~esk~~eidi~n~qlkelk~~~~~q~la 585 (1118)
T KOG1029|consen 550 QLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLA 585 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344556666666678888888888888777776443
No 52
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.63 E-value=0.24 Score=47.61 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhH
Q psy15959 140 RVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTL 177 (393)
Q Consensus 140 ~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~L 177 (393)
..+..+.+.++.|..|+.+.-+.|-+...++-.||+.+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777666666666666666666544
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.57 E-value=0.83 Score=44.48 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=40.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLS 293 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~ls 293 (393)
...+..|..++..|..++...+..+......+...+..+.++=.-+.+....-..-|+-|..++-
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555666666666666666666666666666666666656666666666666666666553
No 54
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.50 E-value=1.2 Score=45.45 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQ 59 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~Lq 59 (393)
++..+++++..++.++..+..++..++
T Consensus 175 ~~~e~~~~i~~l~~~i~~l~~~i~~~~ 201 (562)
T PHA02562 175 KIRELNQQIQTLDMKIDHIQQQIKTYN 201 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554544444444443
No 55
>KOG0977|consensus
Probab=96.49 E-value=0.48 Score=50.85 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy15959 275 QRKLQREVERREALC 289 (393)
Q Consensus 275 ~~kl~~E~erreal~ 289 (393)
..-|..|+..--+|+
T Consensus 372 ki~Ld~EI~~YRkLL 386 (546)
T KOG0977|consen 372 KISLDAEIAAYRKLL 386 (546)
T ss_pred HhHHHhHHHHHHHHh
Confidence 344667776665554
No 56
>KOG0980|consensus
Probab=96.47 E-value=2.2 Score=48.35 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMD 193 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmd 193 (393)
|.|-.++.+|..++.+|-.++.+=+-.+-..- .-|+.++.++..+-..|.++.++-..++-+.|. .-+.++
T Consensus 427 ~klkek~t~l~~~h~~lL~K~~di~kQle~~~-~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~--------~~~~le 497 (980)
T KOG0980|consen 427 EKLKEKYTELRQEHADLLRKYDDIQKQLESAE-QSIDDVEEENTNLNDQLEELQRAAGRAETKTES--------QAKALE 497 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHHH
Confidence 46777888888888888766654332222111 112344445555555666666665555444332 235566
Q ss_pred HHHHHHHHHHHhhc
Q psy15959 194 KLEAEKRILQIKLD 207 (393)
Q Consensus 194 kLe~EKr~LQ~~Le 207 (393)
+|++|+..++.++.
T Consensus 498 ~l~~El~~l~~e~~ 511 (980)
T KOG0980|consen 498 SLRQELALLLIELE 511 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666664443
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.45 E-value=0.52 Score=42.55 Aligned_cols=88 Identities=30% Similarity=0.433 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy15959 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQL 166 (393)
Q Consensus 87 L~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qL 166 (393)
...+|.+.+.++..|..+++ .|.+.|.-++..+..+....|.-+..+. .|..+|..+..+...+..+|+-+
T Consensus 8 v~~kLK~~~~e~dsle~~v~--------~LEreLe~~q~~~e~~~~daEn~k~eie-~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVE--------SLERELEMSQENKECLILDAENSKAEIE-TLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888875 4788888888888888877776665554 78999999999999999999999
Q ss_pred HHhHhHHHHhHHHHHHH
Q psy15959 167 RREKVELENTLEQEQEA 183 (393)
Q Consensus 167 rrEKVeLEn~LEqEQE~ 183 (393)
+.||..|.+.|+..|+.
T Consensus 79 ~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988877654
No 58
>KOG4674|consensus
Probab=96.30 E-value=4 Score=49.37 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHH
Q psy15959 85 NTLMKKIQALKKEKETL---AHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L---~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LE 135 (393)
+.|..-|.+|+.++... ...+..+-..+-|++.+++..+..++..+..+++
T Consensus 1310 ~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ 1363 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELE 1363 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666655433 3333333333445555666666666666655554
No 59
>KOG0018|consensus
Probab=96.25 E-value=3.3 Score=47.88 Aligned_cols=181 Identities=22% Similarity=0.349 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHhHH----------HHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVL---KVELETYKLQLRALQEENKNLRQTSVNIQA---KAEQEEEFISN----------TLMKKI 91 (393)
Q Consensus 28 e~~~~ri~sLqqenr~l---k~ele~~k~R~k~LqeEnr~LR~~sv~iq~---kaEqEEEfItN----------tL~KKL 91 (393)
++|..+-+.|.++...+ +.++.++...+..|+..++-++.....+.. ..++|..++.+ .+.++|
T Consensus 655 ~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l 734 (1141)
T KOG0018|consen 655 DQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKL 734 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 45555555555544433 236778888888888888777755444443 33444444332 456677
Q ss_pred HHHHHHHHHHHHHHHH--------------------HHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHH----HHHHHHHH
Q psy15959 92 QALKKEKETLAHHYEQ--------------------EEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQE----RVVNKLMR 147 (393)
Q Consensus 92 ~~LkkEKe~L~~~~Eq--------------------EEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE----~lVNkL~K 147 (393)
+....+...|+.++++ ||..+.+...+|+.++.+.|..|+++|+=|.. .=|.++.+
T Consensus 735 ~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~ 814 (1141)
T KOG0018|consen 735 QNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWER 814 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHH
Confidence 7777777777766554 33344667778899999999999999988775 12223333
Q ss_pred HHHHHHHHHHhhh-------------hhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 148 KIEKLEAETDAKQ-------------NNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 148 kiekLeaEk~~~q-------------~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
.++.++.+...++ ++++.=...|++=-+.=-.|-..++.+|.+.+.+|..+...+...+++
T Consensus 815 ~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~ 888 (1141)
T KOG0018|consen 815 SVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIER 888 (1141)
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 3333333332222 122221122222222223466778888888888888887777776655
No 60
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.23 E-value=2.7 Score=46.61 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 173 LENTLEQEQEALVNKLWKRMDKLEAEKR 200 (393)
Q Consensus 173 LEn~LEqEQE~LVNkLqKrmdkLe~EKr 200 (393)
..+.+...++...+.|..+++.+..+.+
T Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 378 (908)
T COG0419 351 EKNELAKLLEERLKELEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555566555554
No 61
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.21 E-value=1.6 Score=43.88 Aligned_cols=138 Identities=25% Similarity=0.396 Sum_probs=74.9
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDK 194 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdk 194 (393)
.|-.+|.+|+++..+-..+++. ..-+-.|.++++.+..+-..+..++..|..+= ++---..+++-+..|.
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~--~~~~~el~aei~~lk~~~~e~~eki~~la~ea--------qe~he~m~k~~~~~De 204 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEE--NEKLKELKAEIDELKKKAREIHEKIQELANEA--------QEYHEEMIKLFEEADE 204 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 3445666666666555544431 22223445555555555555555555544432 3444455666666676
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHH
Q psy15959 195 LEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRL 274 (393)
Q Consensus 195 Le~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl 274 (393)
+..+-..+...+.. ...-|..++.++..+.+.|..... ....++.++...
T Consensus 205 ~Rkeade~he~~ve-------------------~~~~~~e~~ee~~~~~~elre~~k-----------~ik~l~~~~~~~ 254 (294)
T COG1340 205 LRKEADELHEEFVE-------------------LSKKIDELHEEFRNLQNELRELEK-----------KIKALRAKEKAA 254 (294)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 66665555544331 334455555565555555555444 445577777777
Q ss_pred HHHHHHH--HHHHHHHHHhh
Q psy15959 275 QRKLQRE--VERREALCRHL 292 (393)
Q Consensus 275 ~~kl~~E--~erreal~r~l 292 (393)
+++-.+| .+|.+.+---|
T Consensus 255 ~~~~~~ee~kera~ei~EKf 274 (294)
T COG1340 255 KRREKREELKERAEEIYEKF 274 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 7777777 55666654433
No 62
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.12 E-value=0.77 Score=46.39 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy15959 37 LQQQNRVLKVELETYKLQLRALQEENKNLRQTSV 70 (393)
Q Consensus 37 Lqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv 70 (393)
|-++...-+.|.+.||..+..|++....|+....
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~ 47 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQERYQALKKKYR 47 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566777777777777777666665443
No 63
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.05 E-value=2.5 Score=44.69 Aligned_cols=127 Identities=17% Similarity=0.332 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHH
Q psy15959 48 LETYKLQLRALQEENKNLRQTS---VNIQAKAEQEEEFIS---NTLMKKIQALKKEKETLAHHYE--QEEEFLTNDLSRK 119 (393)
Q Consensus 48 le~~k~R~k~LqeEnr~LR~~s---v~iq~kaEqEEEfIt---NtL~KKL~~LkkEKe~L~~~~E--qEEE~LTN~L~KK 119 (393)
++.....++.+.+.+..|=... +.....|+..-.-|+ +.+......|..|.+.|...|. ..+--....+.++
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~leke 356 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQ 356 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHH
Confidence 4455555555555555444221 112222222222222 2344555566666666666665 3333334677777
Q ss_pred HHHHhHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHH
Q psy15959 120 LNQLTEEKYRLEQTIEQEQ------ERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELE 174 (393)
Q Consensus 120 L~qL~~EKv~LE~~LEqEQ------E~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLE 174 (393)
|..|......+...+..-. ..-+..+.++++.++.+...++..+..|+++-.+..
T Consensus 357 L~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr 417 (569)
T PRK04778 357 LESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAR 417 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766665554322 233444555555555555555555555555444433
No 64
>KOG4643|consensus
Probab=95.96 E-value=4.4 Score=46.79 Aligned_cols=233 Identities=24% Similarity=0.271 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HH--HH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAH--HY--EQ 107 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~--~~--Eq 107 (393)
..|=.|++....|+.+..+.+.++..|.+||-.|-.++.+|....+-..-|-+|.=. --..++.+.+.|.. -| +=
T Consensus 301 seiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~-en~Sl~~e~eqLts~ralkllL 379 (1195)
T KOG4643|consen 301 SEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEEL-ENESLQVENEQLTSDRALKLLL 379 (1195)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhh-hhhhHHHHHHHhhhHHHHHHHH
Confidence 445567777777777777777777777777777776666666655544433222100 00112222222222 11 11
Q ss_pred HHHHhHHH-----------HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHH---
Q psy15959 108 EEEFLTND-----------LSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVEL--- 173 (393)
Q Consensus 108 EEE~LTN~-----------L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeL--- 173 (393)
|--.++.+ +..|.-.|.+++..|+...|.=+|.+ |.+.+++-+|+..-..+++++++|..|--..
T Consensus 380 Enrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri-~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s 458 (1195)
T KOG4643|consen 380 ENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERI-NQLLQQLAELEDLEKKLQFELEKLLEETSTVTRS 458 (1195)
T ss_pred HhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122222 23344445555544444444333333 3555555556555555566666655543332
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 174 --ENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQ 251 (393)
Q Consensus 174 --En~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~ 251 (393)
++.+++|.-.-+|-++.|+.+--.+.+.--..|.. +-.+---.+.+|......|+.|+....-
T Consensus 459 ~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk---------------~L~~r~~elsrl~a~~~elkeQ~kt~~~ 523 (1195)
T KOG4643|consen 459 LSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNK---------------SLNNRDLELSRLHALKNELKEQYKTCDI 523 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544433332221111110 0001122344555555666666555443
Q ss_pred HH---HHHHHHhHHHHhHHHHHhHHHHHHHHHH
Q psy15959 252 EH---TEKMERYVKDEKNVREENLRLQRKLQRE 281 (393)
Q Consensus 252 e~---~~k~~~~~~ee~~~reeN~rl~~kl~~E 281 (393)
.. ..|......+.-++.+||.+|..+|+.=
T Consensus 524 qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 524 QYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22 2333334455567788999999887753
No 65
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.95 E-value=3.6 Score=45.70 Aligned_cols=87 Identities=31% Similarity=0.415 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------------------HHHHHHHHHHHHHhHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTS----------------------VNIQAKAEQEEEFISN 85 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~s----------------------v~iq~kaEqEEEfItN 85 (393)
..|..||..|+.+.+.+|.++...+.-+..|...+..++... --|+--.|=|||.|
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi-- 107 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI-- 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--
Confidence 346679999999999888888777666655555554444332 22233567789988
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHH
Q psy15959 86 TLMKKIQALKKEKETL------AHHYEQEEEFLTNDL 116 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L------~~~~EqEEE~LTN~L 116 (393)
.|+|-+..|+.--+.. ..+++-|-+||-..|
T Consensus 108 slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ql 144 (717)
T PF09730_consen 108 SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQL 144 (717)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888754432 234445555555433
No 66
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.93 E-value=0.002 Score=68.82 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15959 24 PVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKE 97 (393)
Q Consensus 24 ~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkE 97 (393)
.+...+++..++.|++++..+-..++.++.++..++.++..||+....+...++. +..|.-.|+.|+..
T Consensus 238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~-----a~~LrDElD~lR~~ 306 (713)
T PF05622_consen 238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEARE-----ARALRDELDELREK 306 (713)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHH
Confidence 3556778888999999988777667788999999999999999888777766542 45566666665543
No 67
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.90 E-value=2.1 Score=42.70 Aligned_cols=144 Identities=29% Similarity=0.329 Sum_probs=97.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHH
Q psy15959 81 EFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQE----RVVNKLMRKIEKLEAET 156 (393)
Q Consensus 81 EfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE----~lVNkL~KkiekLeaEk 156 (393)
+-|-..|...+..|+.++..|.+..+.=. -+.-.|..+.+.|+.|-..|.+ +..|.+ -..+++..+|..+..+.
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~-~~~~~l~~~~~~L~~e~~~L~~-~~~e~~~~d~~eL~~lk~~l~~~~~ei 220 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLN-SIKPKLRDRKDALEEELRQLKQ-LEDELEDCDPTELDRAKEKLKKLLQEI 220 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-hHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888776665432 3444555566666555443322 223322 25557777777777788
Q ss_pred HhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHH
Q psy15959 157 DAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLR 236 (393)
Q Consensus 157 ~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr 236 (393)
..+..+++.++.+...+...++ ....++..+..++..++..+++ +.|-|.
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~--------~~~~~k~e~~~~I~~ae~~~~~-----------~r~~t~----------- 270 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIE--------DLTNKKSELNTEIAEAEKKLEQ-----------CRGFTF----------- 270 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHh-----------cCCCCH-----------
Confidence 8888889999988888877665 4556777888888888887764 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15959 237 SEVMRLRNQLANTQQEHTEK 256 (393)
Q Consensus 237 ~Ev~~Lr~~l~~~q~e~~~k 256 (393)
.||.+|+.++..+|..+.=+
T Consensus 271 ~Ei~~Lk~~~~~Le~l~g~~ 290 (312)
T smart00787 271 KEIEKLKEQLKLLQSLTGWK 290 (312)
T ss_pred HHHHHHHHHHHHHHHHhCCe
Confidence 78999999999888876543
No 68
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.80 E-value=0.17 Score=54.48 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 147 RKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQ---------------------EALVNKLWKRMDKLEAEKRILQIK 205 (393)
Q Consensus 147 KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQ---------------------E~LVNkLqKrmdkLe~EKr~LQ~~ 205 (393)
.++..|+.+...++.++++|+.++..|+..|++.+ .+...+ ...|+.|.+|...|..+
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k-~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIK-KSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33444555555566667777777777777777611 111122 57788888888888877
Q ss_pred h
Q psy15959 206 L 206 (393)
Q Consensus 206 L 206 (393)
|
T Consensus 582 l 582 (722)
T PF05557_consen 582 L 582 (722)
T ss_dssp H
T ss_pred H
Confidence 7
No 69
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.77 E-value=0.19 Score=40.70 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQ 92 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~ 92 (393)
.++|..+|..+-.....|+.+++.++.++.+|.++|..|+..+.+++....+=.+.| ..|+.||+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl-~~LL~kl~ 70 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL-RSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 478889999999999999999999999999999999999998888876555555554 34444443
No 70
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.76 E-value=1.2 Score=39.71 Aligned_cols=79 Identities=27% Similarity=0.368 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISN--TLMKKIQALKKEKETLAHH 104 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItN--tL~KKL~~LkkEKe~L~~~ 104 (393)
.+++...++.|.+.+..+-.++..+..++..|..++..+......+...++.-+.-.+| .|.+||+.|-.+.+....+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777777777777666666666655554433 4666666666666555444
Q ss_pred H
Q psy15959 105 Y 105 (393)
Q Consensus 105 ~ 105 (393)
+
T Consensus 96 L 96 (143)
T PF12718_consen 96 L 96 (143)
T ss_pred H
Confidence 4
No 71
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.73 E-value=1.8 Score=40.51 Aligned_cols=95 Identities=24% Similarity=0.340 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHH 104 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~ 104 (393)
||.+.|. -|.+|.++...+|...+.....+..+..+|+.|+.-...+... ...|.++|....++|..|..-
T Consensus 21 IT~~NL~-lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e--------~~eL~k~L~~y~kdK~~L~~~ 91 (201)
T PF13851_consen 21 ITLNNLE-LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE--------VEELRKQLKNYEKDKQSLQNL 91 (201)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 5889999999999888888888999999999998775544333 235777777777777766553
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHh
Q psy15959 105 YEQEEEFLTNDLSRKLNQLTEEKYRLEQT 133 (393)
Q Consensus 105 ~EqEEE~LTN~L~KKL~qL~~EKv~LE~~ 133 (393)
-.+ ...+.++|..|.-|...|+..
T Consensus 92 k~r-----l~~~ek~l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 92 KAR-----LKELEKELKDLKWEHEVLEQR 115 (201)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 222 234455666666665554443
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.52 E-value=4.7 Score=43.90 Aligned_cols=150 Identities=23% Similarity=0.332 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHH
Q psy15959 45 KVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEE----FLTNDLSRKL 120 (393)
Q Consensus 45 k~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE----~LTN~L~KKL 120 (393)
+.+...++-|+..+.+++..|+.........+ ..|-..|..|+..-.... ..+.- -....|+..+
T Consensus 21 k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V--------~eLE~sL~eLk~q~~~~~---~~~~pa~pse~E~~Lq~E~ 89 (617)
T PF15070_consen 21 KEESAQWQQRMQQMSEEVRTLKEEKEHDISRV--------QELERSLSELKNQMAEPP---PPEPPAGPSEVEQQLQAEA 89 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhcccC---CccccccchHHHHHHHHHH
Confidence 34444455555666666666665544444443 233444444443222110 00000 0002344444
Q ss_pred HHHhHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHH--HHHH
Q psy15959 121 NQLTEEKYRLEQTI-------------EQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQ--EALV 185 (393)
Q Consensus 121 ~qL~~EKv~LE~~L-------------EqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQ--E~LV 185 (393)
..|++|+..|+.++ -+|++.-+..|.+.++.+..+......-|..+..+|+-+..++.|=. ..-+
T Consensus 90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL 169 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQL 169 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHH
Confidence 44555554444433 34555555555666666655555555567777778887777776543 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy15959 186 NKLWKRMDKLEAEKRILQIK 205 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~ 205 (393)
--|+...-+|-.+|-.|-.+
T Consensus 170 ~Elq~~Fv~ltne~~elt~~ 189 (617)
T PF15070_consen 170 AELQDAFVKLTNENMELTSA 189 (617)
T ss_pred HHHHHHHHHHHHhhhHhhHH
Confidence 33444444444454333333
No 73
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.49 E-value=3 Score=41.48 Aligned_cols=259 Identities=21% Similarity=0.314 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 26 ~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~ 105 (393)
..+.|..+...+..+++.+...+.....+...++.+...++....+....-. -=|-+..-|++.-..|+.|...+....
T Consensus 23 K~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~-KLE~LCRELQk~Nk~lkeE~~~~~~ee 101 (309)
T PF09728_consen 23 KLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKS-KLESLCRELQKQNKKLKEESKRRAREE 101 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478999999999999999999999999999999999988876443322111 112244555555555565555555544
Q ss_pred HHHHHHhHHHHHHHHHHHh---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhhhHHHHHH
Q psy15959 106 EQEEEFLTNDLSRKLNQLT---EEKYRLEQTIEQEQERVVNKLMRKIEKLEAE--------------TDAKQNNLEQLRR 168 (393)
Q Consensus 106 EqEEE~LTN~L~KKL~qL~---~EKv~LE~~LEqEQE~lVNkL~KkiekLeaE--------------k~~~q~~L~qLrr 168 (393)
+.--.-++..++..|..++ .+..+--..+-.|-+.|-.+|..=+++.+.. ..-...+|.+...
T Consensus 102 e~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 102 EEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444455555554444433 3333333445555555555555544444321 1112233444444
Q ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCC-CCCccchhHhHHHHHHHHHHHHHHH
Q psy15959 169 EKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHD-MNN-GDTASNLSTHIHSLRSEVMRLRNQL 246 (393)
Q Consensus 169 EKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~-~~~-~dt~~~l~~~i~~Lr~Ev~~Lr~~l 246 (393)
.-..-......+.+++...+. ++..+...=..|..+|.- +.+ +.. .||-+.=..-....|.|+..+-.++
T Consensus 182 ~~~~e~~k~~~~~~~~l~~~~-~~~~~~~~E~~Lr~QL~~-------Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~ 253 (309)
T PF09728_consen 182 EAEQEKEKAKQEKEILLEEAA-QVQTLKETEKELREQLNL-------YSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKI 253 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 433444445556665555555 666666665566666542 000 000 1121112233445556666666666
Q ss_pred HHHHHHHHHHHHHhH---HHHhHHHHHhHH---HHHHHHHHHHHHHHHHHhhh
Q psy15959 247 ANTQQEHTEKMERYV---KDEKNVREENLR---LQRKLQREVERREALCRHLS 293 (393)
Q Consensus 247 ~~~q~e~~~k~~~~~---~ee~~~reeN~r---l~~kl~~E~erreal~r~ls 293 (393)
..++.+...=-.+|. .-...+-+|+.. --..+..-+++.+.|||.|-
T Consensus 254 kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 254 KKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555544432222221 112222233222 23345666889999999984
No 74
>PRK09039 hypothetical protein; Validated
Probab=95.47 E-value=3.2 Score=41.66 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=36.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHL 292 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~l 292 (393)
...|..|+.+|+.||.||..++.+...-..+...-...|..=-.+|+..|+.++.-...++..+
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4567788888888888888887766654444433333333334455555555444444444433
No 75
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=95.42 E-value=2.4 Score=40.00 Aligned_cols=93 Identities=22% Similarity=0.296 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHH
Q psy15959 101 LAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQE 180 (393)
Q Consensus 101 L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqE 180 (393)
+..+++..-.-.++.+...+..|...-..|+..+..|-......+......|..+...++..++.-+...++-|..|-.=
T Consensus 75 ~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~kr 154 (247)
T PF06705_consen 75 MQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKR 154 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444555555666666666666666666655555555555555555666677777777777777766666
Q ss_pred HHHHHHHHHHHHH
Q psy15959 181 QEALVNKLWKRMD 193 (393)
Q Consensus 181 QE~LVNkLqKrmd 193 (393)
-+.++++|..+++
T Consensus 155 l~e~~~~l~~~i~ 167 (247)
T PF06705_consen 155 LEEEENRLQEKIE 167 (247)
T ss_pred HHHHHHHHHHHHH
Confidence 6666777766665
No 76
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.35 E-value=2.1 Score=38.77 Aligned_cols=132 Identities=23% Similarity=0.354 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 37 LQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDL 116 (393)
Q Consensus 37 Lqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L 116 (393)
+..+.+..+.+.+.++.++-+|.-++..+......+-..+|. -.+-|..|+.+...+.... |.|
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn--------~k~eie~L~~el~~lt~el--------~~L 71 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAEN--------SKAEIETLEEELEELTSEL--------NQL 71 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH--------HHH
Confidence 344555566777888888888888877776554333333322 2222333444444333332 456
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 117 SRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLE 196 (393)
Q Consensus 117 ~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe 196 (393)
.-.|.-|+.||..|.+.++. .+.+|..|+.-......-|..+-.+|+. +.++..+-|..|++++..|.
T Consensus 72 ~~EL~~l~sEk~~L~k~lq~--------~q~kv~eLE~~~~~~~~~l~~~E~ek~q----~~e~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 72 ELELDTLRSEKENLDKELQK--------KQEKVSELESLNSSLENLLQEKEQEKVQ----LKEESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhc
Confidence 66778899999988888884 4445666665554444444444444444 45566667777777776653
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.31 E-value=5 Score=42.91 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 183 ALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 183 ~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
.-+..|.+++..++.+...+..+|..
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566666677777777777777763
No 78
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.23 E-value=4 Score=41.36 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy15959 36 SLQQQNRVLKVELETYKLQL----RALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89 (393)
Q Consensus 36 sLqqenr~lk~ele~~k~R~----k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~K 89 (393)
-||.+.-+||.+++++|... +.+-++++.++.....++-.+--=||-||.|...
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~q 60 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQ 60 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 37888888898888887765 4578888999988888888777778878877443
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.21 E-value=9.4 Score=45.52 Aligned_cols=28 Identities=7% Similarity=0.287 Sum_probs=19.9
Q ss_pred ccCCCCc-CC--HHHHHHHHHHHHHHHHHHH
Q psy15959 18 LMMPPSP-VT--REQLQKRIESLQQQNRVLK 45 (393)
Q Consensus 18 ~~~p~s~-~~--~e~~~~ri~sLqqenr~lk 45 (393)
+++|.++ |. -+.|..-+.........++
T Consensus 220 yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~ 250 (1486)
T PRK04863 220 YLLPENSGVRKAFQDMEAALRENRMTLEAIR 250 (1486)
T ss_pred HcCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678887 76 6778777777776666665
No 80
>KOG0980|consensus
Probab=95.18 E-value=7.7 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHh
Q psy15959 146 MRKIEKLEAETDAKQNNLEQLRRE 169 (393)
Q Consensus 146 ~KkiekLeaEk~~~q~~L~qLrrE 169 (393)
.+.++.|++|...++.++.+|.+.
T Consensus 493 ~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 493 AKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443
No 81
>KOG0963|consensus
Probab=95.08 E-value=6.7 Score=43.09 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHH
Q psy15959 30 LQKRIESLQQQNRVLKVELETYKLQLRALQE---ENKNLRQTSVNIQAKAEQEEEF--------ISNTLMKKIQALKKEK 98 (393)
Q Consensus 30 ~~~ri~sLqqenr~lk~ele~~k~R~k~Lqe---Enr~LR~~sv~iq~kaEqEEEf--------ItNtL~KKL~~LkkEK 98 (393)
+..++.....||+.|+.+++.+...+..+.. .++.|+...-+.-...+-.-+- .-+....+...|+.+.
T Consensus 112 ~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~ 191 (629)
T KOG0963|consen 112 LLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEE 191 (629)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555788888777776555444333 2233332222222222222222 2233344444455555
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHH
Q psy15959 99 ETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ 138 (393)
Q Consensus 99 e~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQ 138 (393)
..++.+++. -|-=+..|++.+..-+.+--+++++++.|-
T Consensus 192 ~~~~~q~~~-le~ki~~lq~a~~~t~~el~~~~s~~dee~ 230 (629)
T KOG0963|consen 192 QNLQEQLEE-LEKKISSLQSAIEDTQNELFDLKSKYDEEV 230 (629)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Confidence 555555543 333444566666666677777777766554
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.07 E-value=3.9 Score=40.37 Aligned_cols=142 Identities=26% Similarity=0.317 Sum_probs=79.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHH
Q psy15959 81 EFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQE----RVVNKLMRKIEKLEAET 156 (393)
Q Consensus 81 EfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE----~lVNkL~KkiekLeaEk 156 (393)
+-|.+.|...+..|+.+...|....++=. -+...|..+.+.|..+-..|..... |.+ --++.+..+|..+..+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~-~~~~~l~~~~~~L~~e~~~Lk~~~~-e~~~~D~~eL~~lr~eL~~~~~~i 225 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD-ELLPKLRERKAELEEELENLKQLVE-EIESCDQEELEALRQELAEQKEEI 225 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhcCHHHHHHHHHHHHHHHHHH
Confidence 34667777777778877777776555422 2333444444444444443333222 111 23345555555555555
Q ss_pred HhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHH
Q psy15959 157 DAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLR 236 (393)
Q Consensus 157 ~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr 236 (393)
..++.++.+++.+...+... |+.+..++.++..+...++..++. ..|-|.
T Consensus 226 ~~~k~~l~el~~el~~l~~~--------i~~~~~~k~~l~~eI~e~~~~~~~-----------~r~~t~----------- 275 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEK--------IEELEEQKQELLAEIAEAEKIREE-----------CRGWTR----------- 275 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH-----------hcCCCH-----------
Confidence 55555666666665555443 355666677777777777766653 112222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15959 237 SEVMRLRNQLANTQQEHT 254 (393)
Q Consensus 237 ~Ev~~Lr~~l~~~q~e~~ 254 (393)
.||.+|+..+..+|..+.
T Consensus 276 ~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 678888888877776553
No 83
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.97 E-value=0.0067 Score=64.88 Aligned_cols=57 Identities=37% Similarity=0.461 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy15959 228 LSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESE 296 (393)
Q Consensus 228 l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsese 296 (393)
..+||..|-.++.+|+..+..+.+-+... --++|+|.-|++||. |-+.+...|.+.+
T Consensus 255 ql~~i~~LE~en~~l~~Elk~Lr~~~~n~--------elLeEe~~sLq~kl~----~~E~~~~el~~lq 311 (722)
T PF05557_consen 255 QLAHIRELEKENRRLREELKHLRQSQENV--------ELLEEEKRSLQRKLE----RLEELEEELAELQ 311 (722)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 35688888888888887777766555542 235588888888865 4456666666554
No 84
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.94 E-value=4 Score=39.87 Aligned_cols=60 Identities=35% Similarity=0.501 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
.|+..+++|+.+...++..+.++.+.=.+.+..++.|..- +-+++..+..+...|-.+|+
T Consensus 114 ~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~----i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 114 ELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE----IREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcC
Confidence 4444445555555555555555555555555555544333 23444445555555555544
No 85
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.85 E-value=11 Score=44.30 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=16.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQEHTE 255 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~ 255 (393)
..+...|...+.++...+..+......
T Consensus 424 ~~~r~~l~~~~~~~~~~i~~L~~~~~~ 450 (1353)
T TIGR02680 424 DARRQDADRVIAQRSEQVALLRRRDDV 450 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666665554443
No 86
>PRK09039 hypothetical protein; Validated
Probab=94.77 E-value=5.1 Score=40.23 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy15959 88 MKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLR 167 (393)
Q Consensus 88 ~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLr 167 (393)
...+..++..+..|...|+.=. --...+..++.+|..+-..+.. .=.|.--.|-.|+.+|+.|++....++..|+-..
T Consensus 87 ~~~l~~a~~~r~~Le~~~~~~~-~~~~~~~~~~~~l~~~L~~~k~-~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 87 RASLSAAEAERSRLQALLAELA-GAGAAAEGRAGELAQELDSEKQ-VSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-hhcchHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666554100 0123455666666544433333 3334555666888888888888777777777777
Q ss_pred HhHhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 168 REKVELENTLEQEQEALVNKLWKRMDKLEA 197 (393)
Q Consensus 168 rEKVeLEn~LEqEQE~LVNkLqKrmdkLe~ 197 (393)
....+....|+.=+..|-+.|..+...|..
T Consensus 165 ~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 165 KRDRESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665555554444444444443433433
No 87
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.70 E-value=7.1 Score=42.08 Aligned_cols=49 Identities=14% Similarity=0.284 Sum_probs=33.2
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy15959 119 KLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLR 167 (393)
Q Consensus 119 KL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLr 167 (393)
++..++.+..+|+.++.+|...+++.+...++.+.+....++..+..++
T Consensus 317 ~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~ 365 (754)
T TIGR01005 317 RVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLK 365 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777778888888888887777766666555555555555543
No 88
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.60 E-value=6.2 Score=43.93 Aligned_cols=92 Identities=25% Similarity=0.276 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy15959 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEAL---VNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNN 221 (393)
Q Consensus 145 L~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~L---VNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~ 221 (393)
|.-++.....|...++.+|..|+.+-..++..-.++-..+ +..|+.++..++...+.-+.++
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri--------------- 421 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI--------------- 421 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---------------
Confidence 4556666666677777888888888888888666665544 5666777777765443333322
Q ss_pred CCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 222 GDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTE 255 (393)
Q Consensus 222 ~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~ 255 (393)
..|.+.+..++.-...-...|..+|.+...
T Consensus 422 ----~~LE~ELr~l~~~A~E~q~~LnsAQDELvt 451 (717)
T PF09730_consen 422 ----SELEKELRALSKLAGESQGSLNSAQDELVT 451 (717)
T ss_pred ----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 234555555555555555566666655443
No 89
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.56 E-value=0.0098 Score=63.65 Aligned_cols=178 Identities=28% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh------HHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETY---KLQLRALQEENKNLRQTSVNIQAKAEQEEEFI------SNTLMKKIQALKKE 97 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~---k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfI------tNtL~KKL~~LkkE 97 (393)
+++|..+++.++.++..|+.+.+.+ ...+.+|..|+-.||..+.++.. .|.+-+-. .+.|.+++..|+..
T Consensus 262 ~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~k-lE~~ve~YKkKLed~~~lk~qvk~Lee~ 340 (713)
T PF05622_consen 262 RDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADK-LENEVEKYKKKLEDLEDLKRQVKELEED 340 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666554444 35677788888888876555322 22221100 23334444444443
Q ss_pred HHH-HHHHHHHHHHHhH-HHHHHHHHHHhHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q psy15959 98 KET-LAHHYEQEEEFLT-NDLSRKLNQLTEEKYRLEQTIEQEQE------RVVNKLMRKIEKLEAETDAKQNNLEQLRRE 169 (393)
Q Consensus 98 Ke~-L~~~~EqEEE~LT-N~L~KKL~qL~~EKv~LE~~LEqEQE------~lVNkL~KkiekLeaEk~~~q~~L~qLrrE 169 (393)
... +...+.-|++.-. +.+..+|..++++-.+|+..+..+.. |-...|..+++.|+.++..+....+.|+..
T Consensus 341 N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 341 NAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRET 420 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 3333444555443 67778888888888888888876653 334455555555555554444444444321
Q ss_pred HhHHHH--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 170 KVELEN--------------------TLEQEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 170 KVeLEn--------------------~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
--+|+. .|..|. .-..+..++.+|+.|...|....+
T Consensus 421 ~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El--~~~~l~erl~rLe~ENk~Lk~~~e 476 (713)
T PF05622_consen 421 NEELECSQAQQEQLSQSGEESSSSGDNLSAEL--NPAELRERLLRLEHENKRLKEKQE 476 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHhhhccccccccccccccccccccchhhhc--cchHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 122222 223456677788888887765544
No 90
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.26 E-value=0.86 Score=41.69 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
..+...+..+++++..+...-..+.-++..+..++..++
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~ 108 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELE 108 (194)
T ss_dssp ---------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccchhh
Confidence 334445555555554444443344444444444443333
No 91
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=94.18 E-value=1.8 Score=40.24 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCCCCCCCCCccchhHhHHHHHHHHH
Q psy15959 178 EQEQEALVNKLWKRMDKLEAEKRILQIKLDQP-VSDPSSPHDMNNGDTASNLSTHIHSLRSEVM 240 (393)
Q Consensus 178 EqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~-vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~ 240 (393)
.++|-.||.+|+.++.+.......|+.+|... +++.+++......+...+|..-+.+|..|=.
T Consensus 11 Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq 74 (182)
T PF15035_consen 11 QQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ 74 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH
Confidence 57889999999999999999999999999544 6666666522223334566666666666543
No 92
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.12 E-value=6 Score=38.33 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 149 IEKLEAETDAKQNNLEQLRREKVELENTLEQE-------QEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 149 iekLeaEk~~~q~~L~qLrrEKVeLEn~LEqE-------QE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
+..++++....+..+.+++.+...++..+... .+.-++.+..++..++.....++..|+.
T Consensus 205 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 205 RAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333344444444444444444444333 3333445555666666666666665554
No 93
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.06 E-value=12 Score=41.47 Aligned_cols=91 Identities=18% Similarity=0.356 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEF 111 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~ 111 (393)
..|+.|+-+....|.--..++.++..|....+.+|...-+++...|+ |+.||..|.+.+. + +-.
T Consensus 425 ~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~--------Lq~Kl~~L~~aRq-------~-DKq 488 (697)
T PF09726_consen 425 ADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQ--------LQNKLQNLVQARQ-------Q-DKQ 488 (697)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-------H-HHH
Confidence 34444555555555444555666666666666666666555554432 3333333333211 1 111
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHHHHH
Q psy15959 112 LTNDLSRKLNQLTEEKYRLEQTIEQEQ 138 (393)
Q Consensus 112 LTN~L~KKL~qL~~EKv~LE~~LEqEQ 138 (393)
--..|.|||...++-+..+|.+|-.|.
T Consensus 489 ~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 489 SLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 114577888888888888888887775
No 94
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=94.05 E-value=9 Score=40.11 Aligned_cols=111 Identities=25% Similarity=0.340 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH-HHhHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhhHHHHHHh
Q psy15959 96 KEKETLAHHYEQEEEFLTNDLSRKLN-QLTEEKYRLEQTIEQEQERVVNKLMRKI-----EKLEAETDAKQNNLEQLRRE 169 (393)
Q Consensus 96 kEKe~L~~~~EqEEE~LTN~L~KKL~-qL~~EKv~LE~~LEqEQE~lVNkL~Kki-----ekLeaEk~~~q~~L~qLrrE 169 (393)
.....+...++++.+.+......+|. +|.+....++..|..+....-..|+++. ++++.|......+|+.|...
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~ 386 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSR 386 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666666666665 6666666666666666554444444443 23444455555666666666
Q ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 170 KVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 170 KVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
=-.|+..+..=.+.+.. -.++.+|-.=...|+..|..
T Consensus 387 ~~~le~~~~~~~~~~~~--~~~~~~l~~a~~~l~~~l~~ 423 (582)
T PF09731_consen 387 LKALEEALDARSEAEDE--NRRAQQLWLAVDALKSALDS 423 (582)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 55566555443332211 12233333334445555554
No 95
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.83 E-value=5.6 Score=36.93 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy15959 91 IQALKKEKETLAHHY 105 (393)
Q Consensus 91 L~~LkkEKe~L~~~~ 105 (393)
|..++.+++.|..++
T Consensus 29 l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 29 LQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 96
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.66 E-value=11 Score=39.67 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=11.9
Q ss_pred HHHHHHhHHHHhHHHHHhH
Q psy15959 254 TEKMERYVKDEKNVREENL 272 (393)
Q Consensus 254 ~~k~~~~~~ee~~~reeN~ 272 (393)
...+..|-.+..+++++-.
T Consensus 336 e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELS 354 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777643
No 97
>KOG0249|consensus
Probab=93.63 E-value=16 Score=41.43 Aligned_cols=59 Identities=31% Similarity=0.492 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 176 TLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTE 255 (393)
Q Consensus 176 ~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~ 255 (393)
+|++|.+. +.|+++.++.+|..|+ ..|+.||.|++.|++....-++++..
T Consensus 220 ~L~~e~~s----~kk~l~~~~~~k~rl~--------------------------~d~E~Lr~e~~qL~~~~~~~~~~mrd 269 (916)
T KOG0249|consen 220 RLEQELES----VKKQLEEMRHDKDKLR--------------------------TDIEDLRGELDQLRRSSLEKEQELRD 269 (916)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 44444444 4567777777766654 56778888888888766555556665
Q ss_pred HHHHhHHHH
Q psy15959 256 KMERYVKDE 264 (393)
Q Consensus 256 k~~~~~~ee 264 (393)
-...|+..-
T Consensus 270 ~~~~~~e~~ 278 (916)
T KOG0249|consen 270 HLRTYAERR 278 (916)
T ss_pred hhhhhHHHH
Confidence 555565543
No 98
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.54 E-value=12 Score=39.66 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=12.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQ 250 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q 250 (393)
..-|..|..++.+++..|....
T Consensus 336 ~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HhHHhhHHHHHHHHHHHHHHHH
Confidence 3455566666666666665544
No 99
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.39 E-value=8.9 Score=37.91 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=48.0
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHH----HHHH
Q psy15959 117 SRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKL----WKRM 192 (393)
Q Consensus 117 ~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkL----qKrm 192 (393)
..+|..++.+-.++...++ .+.+.+..|+.+...+..+++.+..+|.++...+. +.+.+++.- ...+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~--------~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~-e~~~~~~~~r~~t~~Ev 278 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIE--------AKKKELAELQEELEELEEKIEELEEQKQELLAEIA-EAEKIREECRGWTRSEV 278 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCHHHH
Confidence 4556666666654444443 56666777777777777777777777777777665 333333211 1335
Q ss_pred HHHHHHHHHHHHhh
Q psy15959 193 DKLEAEKRILQIKL 206 (393)
Q Consensus 193 dkLe~EKr~LQ~~L 206 (393)
..|.++-+.||...
T Consensus 279 ~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 279 KRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666544
No 100
>KOG0804|consensus
Probab=93.36 E-value=7.9 Score=41.37 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=18.7
Q ss_pred cccCccccCCCCcCCHHHHHHHHHHHH
Q psy15959 12 SMDGVALMMPPSPVTREQLQKRIESLQ 38 (393)
Q Consensus 12 s~~g~~~~~p~s~~~~e~~~~ri~sLq 38 (393)
..|++.+++--+++...||-....--.
T Consensus 312 ~~~~~~~~~~~s~ll~sqleSqr~y~e 338 (493)
T KOG0804|consen 312 KDDCDSLELEYSPLLTSQLESQRKYYE 338 (493)
T ss_pred ccCcceEEeecchhhhhhhhHHHHHHH
Confidence 567788888888887777765443333
No 101
>KOG0962|consensus
Probab=93.24 E-value=22 Score=42.11 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEEN 62 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEn 62 (393)
.|.++++.....++...+.++.+++..+.-.-.-..++
T Consensus 819 ~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i 856 (1294)
T KOG0962|consen 819 RTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREI 856 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37799999999999999999988887765544433333
No 102
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.14 E-value=14 Score=39.38 Aligned_cols=108 Identities=25% Similarity=0.473 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHH
Q psy15959 86 TLMKKIQALKKEKETLAHHYE--QEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ------ERVVNKLMRKIEKLEAETD 157 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~E--qEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQ------E~lVNkL~KkiekLeaEk~ 157 (393)
.+.+....|..|-+.+...|. ..+.-....|.++|..|.+.-..+...++..+ ...+..+.++|+.++.+..
T Consensus 317 ~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~ 396 (560)
T PF06160_consen 317 HAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQE 396 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666665 23444557888888888888888887777543 2444555666666666666
Q ss_pred hhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 158 AKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 158 ~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
.....|..|+.+ |.++ .++++++....+...++++.
T Consensus 397 ~~~~~l~~L~~d----------E~~A-----r~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 397 EINESLQSLRKD----------EKEA-----REKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred HHHHHHHHHHHH----------HHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 666666666653 2222 45666677777776776665
No 103
>KOG1924|consensus
Probab=93.03 E-value=1.5 Score=49.42 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy15959 54 QLRALQEENKNLR 66 (393)
Q Consensus 54 R~k~LqeEnr~LR 66 (393)
-.+-+++-++.||
T Consensus 205 ~~k~~~eiIrClk 217 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLK 217 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 104
>KOG0964|consensus
Probab=93.01 E-value=22 Score=41.41 Aligned_cols=56 Identities=29% Similarity=0.478 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEK 199 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EK 199 (393)
+-..++.+|..+...++.+|.+++++-.+++-..-.=.-.|.-+|-++...|.++.
T Consensus 782 ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei 837 (1200)
T KOG0964|consen 782 EELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEI 837 (1200)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 33555666777777788899999999888665443333345557888888886554
No 105
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.00 E-value=2.4 Score=38.85 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNL 65 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~L 65 (393)
..+.++.+..-.++.|+..+......+++.+..+
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~ 100 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVEL 100 (194)
T ss_dssp ----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 3455666666566666555555555555444333
No 106
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.90 E-value=8.6 Score=36.38 Aligned_cols=7 Identities=14% Similarity=0.548 Sum_probs=2.5
Q ss_pred HHHHhHH
Q psy15959 256 KMERYVK 262 (393)
Q Consensus 256 k~~~~~~ 262 (393)
++..|+.
T Consensus 197 ~f~~~v~ 203 (247)
T PF06705_consen 197 QFQNFVL 203 (247)
T ss_pred HHHHHHH
Confidence 3333333
No 107
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.90 E-value=5 Score=35.39 Aligned_cols=38 Identities=29% Similarity=0.513 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhH
Q psy15959 140 RVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTL 177 (393)
Q Consensus 140 ~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~L 177 (393)
.+|++|+..|..++.|..+++.++.+|.++|..+.+.|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998888876643
No 108
>KOG0977|consensus
Probab=92.78 E-value=17 Score=39.50 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=23.9
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 20 MPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 20 ~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
.|.+++- +-=...-..|++-|. .|+.|=-|+.-|..+|++|-..
T Consensus 28 ~~as~ir-~sR~rEK~El~~LND----RLA~YIekVR~LEaqN~~L~~d 71 (546)
T KOG0977|consen 28 NAASPIR-DSREREKKELQELND----RLAVYIEKVRFLEAQNRKLEHD 71 (546)
T ss_pred cchhhhH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455552 222223344555544 3556777777777777776643
No 109
>PRK11281 hypothetical protein; Provisional
Probab=92.74 E-value=24 Score=41.16 Aligned_cols=188 Identities=18% Similarity=0.202 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMD 193 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmd 193 (393)
+.|..+|.++..+..+..+.|....-.+++ ++.+.++..+.....+..+.++++.....-..-+.=-+...+.|+-+..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~-~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~ 202 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVS-LQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQA 202 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHH
Confidence 445566665555555555555544444442 5555554444433333333333332111000001111445566666666
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC----ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HH-H----
Q psy15959 194 KLEAEKRILQIKLDQPVSDPSSPHDMNNGDT----ASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERY-VK-D---- 263 (393)
Q Consensus 194 kLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt----~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~-~~-e---- 263 (393)
-+..+...++..|.. .+.+ .+- -+-+..+|+.+-.++..|.+.+..--.+.+++...= .. +
T Consensus 203 ~l~~~~~~~~~~l~~-----~~~l----~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~ 273 (1113)
T PRK11281 203 LLNAQNDLQRKSLEG-----NTQL----QDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAAR 273 (1113)
T ss_pred HHHHHHHHHHHHHhc-----chHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 677776666666652 0000 010 011234444444444444444333111111110000 00 0
Q ss_pred ------HhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccchhh--hhhhccHHHh
Q psy15959 264 ------EKNVREENLRLQRKLQREVERREALCRHLSESESSLEM--EEERHYNEIA 311 (393)
Q Consensus 264 ------e~~~reeN~rl~~kl~~E~erreal~r~lsesesslE~--~eer~fn~~~ 311 (393)
....-+.|..|-+.|..--.|...+..+...-..-++. ..+|.-+++.
T Consensus 274 ~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 274 IQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122458888888877777777776665544443332 2444444433
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.73 E-value=6.6 Score=34.63 Aligned_cols=72 Identities=29% Similarity=0.445 Sum_probs=41.0
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 23 SPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLA 102 (393)
Q Consensus 23 s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~ 102 (393)
|.-.-+.|...|..+. .|+.+++.++..|+.+-..++...+++-...+. .....+++..|+.+..+|.
T Consensus 14 ~~~~ve~L~s~lr~~E-------~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~-----~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLE-------GELASLQEELARLEAERDELREEIVKLMEENEE-----LRALKKEVEELEQELEELQ 81 (120)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544 445555555566666656666555555443332 2455666777777777777
Q ss_pred HHHH
Q psy15959 103 HHYE 106 (393)
Q Consensus 103 ~~~E 106 (393)
.+|+
T Consensus 82 ~ry~ 85 (120)
T PF12325_consen 82 QRYQ 85 (120)
T ss_pred HHHH
Confidence 7774
No 111
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.56 E-value=18 Score=39.33 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
..+.+|+++...++..++.+...++.+....+.+.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~ 362 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLE 362 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444444444444444444444443
No 112
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.54 E-value=10 Score=36.46 Aligned_cols=48 Identities=23% Similarity=0.363 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 49 ETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHH 104 (393)
Q Consensus 49 e~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~ 104 (393)
..+..|...++++++..+.+...-..++. .|-.++..+..+...|+.+
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~--------~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAE--------ELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777666554444433 3445556666666555544
No 113
>KOG4593|consensus
Probab=92.51 E-value=21 Score=39.92 Aligned_cols=170 Identities=24% Similarity=0.250 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHhhh
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKI----EKLEAETDAKQ 160 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~Kki----ekLeaEk~~~q 160 (393)
+...+|+..|..++.+=- +|..-+-+.+--++..++.++-..+..+.+=.-++. ++.|.+ .++..+-...+
T Consensus 136 q~~~~k~~el~~e~~~k~----ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~-~~eke~~~~~~ql~~~~q~~~ 210 (716)
T KOG4593|consen 136 QANLKKELELLREKEDKL----AELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQ-NEEKELDRQHKQLQEENQKIQ 210 (716)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666655433 344556777777888898888888777766544444 333333 33333333333
Q ss_pred hhHHHHHHhHh------HHHH-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhH
Q psy15959 161 NNLEQLRREKV------ELEN-TLEQ-EQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHI 232 (393)
Q Consensus 161 ~~L~qLrrEKV------eLEn-~LEq-EQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i 232 (393)
...++|+.-++ +++. .... |-+.|+-...-++..+....+.+-..-+- ..+.++ +.+|.
T Consensus 211 ~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee----~~~~re--~~~tv------- 277 (716)
T KOG4593|consen 211 ELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREE----LATLRE--NRETV------- 277 (716)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--hhhhh-------
Confidence 33333333222 2222 3334 56666666666776666665554433321 111121 12333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHH
Q psy15959 233 HSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQR 280 (393)
Q Consensus 233 ~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~ 280 (393)
..|..|+..|++++.... .|...-.-+-.+|..|.-+|++
T Consensus 278 ~~LqeE~e~Lqskl~~~~--------~l~~~~~~LELeN~~l~tkL~r 317 (716)
T KOG4593|consen 278 GLLQEELEGLQSKLGRLE--------KLQSTLLGLELENEDLLTKLQR 317 (716)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHHHHH
Confidence 344455555555544322 1223334455788888777654
No 114
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.37 E-value=19 Score=38.98 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=32.0
Q ss_pred hhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 159 KQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 159 ~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
.+-.+..++++-.+|+..+.+|...+++.+..+++.+.+....|+.++
T Consensus 314 ~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l 361 (754)
T TIGR01005 314 NHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDV 361 (754)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777788888888888888877766665555544444433
No 115
>KOG0996|consensus
Probab=92.28 E-value=29 Score=41.01 Aligned_cols=201 Identities=26% Similarity=0.309 Sum_probs=104.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHH---HhHH---HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy15959 86 TLMK-KIQALKKEKETLAHHYEQEEE---FLTN---DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETD- 157 (393)
Q Consensus 86 tL~K-KL~~LkkEKe~L~~~~EqEEE---~LTN---~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~- 157 (393)
++.+ +...++++..++..+.-+=+| ++++ .|.+.|++.++++.++++..|.=.. ...+++..|++|.....
T Consensus 380 ~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~-~i~~~~~ei~~L~~~~~~ 458 (1293)
T KOG0996|consen 380 KELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARI-EIQKCQTEIEQLEELLEK 458 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHh-HHHHHHHHHHHHHHHHHH
Confidence 3444 667777777776655433333 3442 5667788888888888877774332 22344455544443221
Q ss_pred ----------hhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccc
Q psy15959 158 ----------AKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASN 227 (393)
Q Consensus 158 ----------~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~ 227 (393)
.++.+..-++.|...++.+|...-+. ||....+++=.+.|...|-.+-++....-. ....+-..
T Consensus 459 ~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~-~n~~~~e~~vaesel~~L~~~~~~~~~~~e-----~lk~~L~~ 532 (1293)
T KOG0996|consen 459 EERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ-VNEARSELDVAESELDILLSRHETGLKKVE-----ELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 12223333444455555544444332 444444444444444443333222100000 00001123
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy15959 228 LSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESES 297 (393)
Q Consensus 228 l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lseses 297 (393)
..+|+...+.++..++..|....++..++ ..+.-+++.+=.-|++.+..=..|.+.+...++.+-|
T Consensus 533 ~~~~~~e~~~~l~~~k~~l~~~k~e~~~~----~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 533 SSESLKEKKTELDDLKEELPSLKQELKEK----EKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46677777788888888887777666554 3344445555445566666666666666666655544
No 116
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.26 E-value=19 Score=38.83 Aligned_cols=102 Identities=24% Similarity=0.345 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 50 TYKLQLRALQEENKNLRQTSVNIQAKAEQEEEF--ISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 50 ~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEf--ItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
.-..++..||--|.-|-..-..+|.++-...=| |.|.|..+|..|-.+|=.+ .=||
T Consensus 328 kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~v----------------------iLEK 385 (527)
T PF15066_consen 328 KQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRV----------------------ILEK 385 (527)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHh----------------------hhhh
Confidence 334555666666655555445555554444443 4566666666665544322 2244
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHH
Q psy15959 128 YRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELE 174 (393)
Q Consensus 128 v~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLE 174 (393)
-++++.|-.=||.+. .-+|.|.+-+.|+..+|-+|..+...=|.|.
T Consensus 386 nd~~k~lqnLqe~la-~tqk~LqEsr~eKetLqlelkK~k~nyv~LQ 431 (527)
T PF15066_consen 386 NDIEKTLQNLQEALA-NTQKHLQESRNEKETLQLELKKIKANYVHLQ 431 (527)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 455555555444444 3355555555566666655555555555543
No 117
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.08 E-value=24 Score=39.60 Aligned_cols=121 Identities=28% Similarity=0.357 Sum_probs=69.5
Q ss_pred HHHhHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHhHhHHHHhHHHHHHHH----------
Q psy15959 121 NQLTEEKYRLEQTIE---QEQERVVNKLMRKIEKLEAET---DAKQNNLEQLRREKVELENTLEQEQEAL---------- 184 (393)
Q Consensus 121 ~qL~~EKv~LE~~LE---qEQE~lVNkL~KkiekLeaEk---~~~q~~L~qLrrEKVeLEn~LEqEQE~L---------- 184 (393)
.+|+..-..|+..+. +|+.-|.+.|+.+.-.++-|. ..++.+|.+-..+...+-.......+.+
T Consensus 334 ~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~ 413 (739)
T PF07111_consen 334 KQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSS 413 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555443 455677778877777776665 3457777777776666666655555442
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhcCCC----------------------CCCCCCCCCCCCCCccchhHhHHHHHHHH
Q psy15959 185 VNKLWKRMDKLEAE---KRILQIKLDQPV----------------------SDPSSPHDMNNGDTASNLSTHIHSLRSEV 239 (393)
Q Consensus 185 VNkLqKrmdkLe~E---Kr~LQ~~Leq~v----------------------S~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev 239 (393)
...|..+|.+++.- ...|..+|.-.+ +.|++|- .++++...++.||.|=
T Consensus 414 q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp------~~~dL~~ELqqLReER 487 (739)
T PF07111_consen 414 QQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPP------SVTDLSLELQQLREER 487 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCC------chhhHHHHHHHHHHHH
Confidence 23456666666653 333444443211 1122221 2567888888888888
Q ss_pred HHHHHHHH
Q psy15959 240 MRLRNQLA 247 (393)
Q Consensus 240 ~~Lr~~l~ 247 (393)
.+|-.+|.
T Consensus 488 dRl~aeLq 495 (739)
T PF07111_consen 488 DRLDAELQ 495 (739)
T ss_pred HHHHHHHH
Confidence 77776654
No 118
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.07 E-value=7.5 Score=33.77 Aligned_cols=100 Identities=25% Similarity=0.380 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy15959 89 KKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRR 168 (393)
Q Consensus 89 KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrr 168 (393)
..|.....--.....+||+|=---. ...+.|..|+.+-. .+..+|..|+.+.......|.....
T Consensus 31 ~dl~~q~~~a~~Aq~~YE~El~~Ha-~~~~~L~~lr~e~~---------------~~~~~~~~l~~~~~~a~~~l~~~e~ 94 (132)
T PF07926_consen 31 EDLESQAKIAQEAQQKYERELVKHA-EDIKELQQLREELQ---------------ELQQEINELKAEAESAKAELEESEA 94 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455667766433222 33666676666643 3444444555544444455554444
Q ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 169 EKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 169 EKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
.=.+-+..|+.|. +-+.++++.|......|..+|+.
T Consensus 95 sw~~qk~~le~e~----~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 95 SWEEQKEQLEKEL----SELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333444443 34678889999999988888874
No 119
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.99 E-value=0.045 Score=60.44 Aligned_cols=104 Identities=30% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEF 111 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~ 111 (393)
....-|+.+|..|...++.....+..|.-....|-.....++..++.| -.--..|..++..+..+...|...++.|.+.
T Consensus 208 ~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE-tr~k~~L~~~l~~le~e~~~L~eqleeE~e~ 286 (859)
T PF01576_consen 208 EQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE-TRAKQALEKQLRQLEHELEQLREQLEEEEEA 286 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH-hhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333334444444444444444444444333333333333333222222 2233445555555555555555555443332
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHHHH
Q psy15959 112 LTNDLSRKLNQLTEEKYRLEQTIEQE 137 (393)
Q Consensus 112 LTN~L~KKL~qL~~EKv~LE~~LEqE 137 (393)
.+.|++.|..+..|-.++-..++.+
T Consensus 287 -k~~l~~qlsk~~~El~~~k~K~e~e 311 (859)
T PF01576_consen 287 -KSELERQLSKLNAELEQWKKKYEEE 311 (859)
T ss_dssp --------------------------
T ss_pred -HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2334444444444444444444443
No 120
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.77 E-value=13 Score=35.80 Aligned_cols=94 Identities=27% Similarity=0.344 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcc--c--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy15959 187 KLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTAS--N--LSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVK 262 (393)
Q Consensus 187 kLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~--~--l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ 262 (393)
.|..++.+|+.|...|...+.........+.....+|.+. . -...+..|+.+|.+|+..|....+.+...+..|..
T Consensus 84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ 163 (202)
T PF06818_consen 84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ 163 (202)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556778888888888888876422222222112222111 1 13457778888888888888888888888777776
Q ss_pred HHhHHHH---HhHHHHHHHHH
Q psy15959 263 DEKNVRE---ENLRLQRKLQR 280 (393)
Q Consensus 263 ee~~~re---eN~rl~~kl~~ 280 (393)
|-+.-.+ .=++-|+-||.
T Consensus 164 ER~~W~eEKekVi~YQkQLQ~ 184 (202)
T PF06818_consen 164 ERRTWQEEKEKVIRYQKQLQQ 184 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 6554444 46777888876
No 121
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.68 E-value=20 Score=37.89 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=37.1
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHH
Q psy15959 224 TASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKL 278 (393)
Q Consensus 224 t~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl 278 (393)
...++..-++.|..|....|.....++.+...-...+..--..|..-..||+.-+
T Consensus 366 ~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ 420 (522)
T PF05701_consen 366 AMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAAL 420 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888887777777766655555555555555566665543
No 122
>KOG0933|consensus
Probab=91.46 E-value=34 Score=40.05 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 183 ALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERY 260 (393)
Q Consensus 183 ~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~ 260 (393)
..+++|+-..+.|+.+....+..|.+ +..-|..|..|+..|+..+...+.++.+.....
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~-------------------~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el 873 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQ-------------------LEKQISSLKSELGNLEAKVDKVEKDVKKAQAEL 873 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 44678888888888888888887774 456677888888888888887777666654333
No 123
>KOG0978|consensus
Probab=91.41 E-value=28 Score=38.97 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=11.8
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHH
Q psy15959 225 ASNLSTHIHSLRSEVMRLRNQLANTQ 250 (393)
Q Consensus 225 ~~~l~~~i~~Lr~Ev~~Lr~~l~~~q 250 (393)
+..+..-...|+.++...-.++...+
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~ 586 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQ 586 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 124
>PRK11820 hypothetical protein; Provisional
Probab=91.28 E-value=11 Score=37.51 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=77.1
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Q psy15959 65 LRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNK 144 (393)
Q Consensus 65 LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNk 144 (393)
+..+..++...-+.|-+.|...|..+|..+..-...+.....+=-+-.-..|..+|..+.. .-=++.|.+|--.+..
T Consensus 135 l~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~--~~d~~Rl~qEval~ad- 211 (288)
T PRK11820 135 LDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLG--ELDENRLEQEVALLAQ- 211 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHH-
Confidence 4444445555555666666666666666666655555555444444444455555555531 1123444444433332
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC-
Q psy15959 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGD- 223 (393)
Q Consensus 145 L~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~d- 223 (393)
|....++++||+.==....+.|..+.- .+|+||=|-+|..+==-.+ |+
T Consensus 212 -----------K~DI~EEi~RL~sHl~~f~~~L~~~~~-----vGrkLDFL~QEm~RE~NTi---------------gSK 260 (288)
T PRK11820 212 -----------KADIAEELDRLKSHLKEFREILKKGGP-----VGRKLDFLMQELNREANTL---------------GSK 260 (288)
T ss_pred -----------HcchHHHHHHHHHHHHHHHHHHhcCCC-----CCcchhHHHHHHhHHHHHH---------------HHc
Confidence 222234444444444444444443321 2566665555533211111 22
Q ss_pred -CccchhHhHHHHHHHHHHHHHHHHHH
Q psy15959 224 -TASNLSTHIHSLRSEVMRLRNQLANT 249 (393)
Q Consensus 224 -t~~~l~~~i~~Lr~Ev~~Lr~~l~~~ 249 (393)
....++.++=.++.|+.++|.|+.+.
T Consensus 261 s~~~~is~~vVe~K~elEkiREQVQNI 287 (288)
T PRK11820 261 SNDAEITNLVVELKVLIEQMREQVQNI 287 (288)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22347788888999999999887653
No 125
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.10 E-value=25 Score=37.80 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15959 85 NTLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~E 106 (393)
+.+.++++.|.++..++..+++
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e 226 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYE 226 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444443
No 126
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.04 E-value=16 Score=35.47 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=16.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQE 252 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e 252 (393)
...+..++.++..++.++...+..
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777643
No 127
>KOG2072|consensus
Probab=90.97 E-value=35 Score=39.27 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=21.3
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 118 RKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAET 156 (393)
Q Consensus 118 KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk 156 (393)
+.+.+|.+|+.+|+..|. ...|+||-++.-+
T Consensus 670 ~q~eel~Ke~kElq~rL~--------~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 670 RQIEELEKERKELQSRLQ--------YQEKKIDHLERAK 700 (988)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHhhhhHHHHHH
Confidence 456777777777777766 5667777776654
No 128
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=90.93 E-value=7.2 Score=31.31 Aligned_cols=83 Identities=23% Similarity=0.284 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 48 LETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 48 le~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
+..++.++.....-...+......+..+++...+-|...+..=+..|...+..|..+++.+.+-....|...+.++....
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l 88 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQ 88 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555666666666666666666666666666666666666555555555555555444
Q ss_pred HHH
Q psy15959 128 YRL 130 (393)
Q Consensus 128 v~L 130 (393)
..|
T Consensus 89 ~~l 91 (127)
T smart00502 89 EKL 91 (127)
T ss_pred HHH
Confidence 433
No 129
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=90.85 E-value=8.4 Score=38.27 Aligned_cols=24 Identities=8% Similarity=0.335 Sum_probs=19.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHH
Q psy15959 226 SNLSTHIHSLRSEVMRLRNQLANT 249 (393)
Q Consensus 226 ~~l~~~i~~Lr~Ev~~Lr~~l~~~ 249 (393)
..++.++=.++.|+.++|.|+.+.
T Consensus 267 ~~is~~vVe~K~eiEkiREQVQNI 290 (291)
T TIGR00255 267 ADITNLAVEMKVLIEKIKEQIQNI 290 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 347788888999999999887653
No 130
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.57 E-value=4.9 Score=39.99 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhc
Q psy15959 192 MDKLEAEKRILQIKLD 207 (393)
Q Consensus 192 mdkLe~EKr~LQ~~Le 207 (393)
.+.+.......+..|+
T Consensus 115 ~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 131
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.47 E-value=42 Score=39.36 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=53.5
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 21 PPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKET 100 (393)
Q Consensus 21 p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~ 100 (393)
+.+.+|.++++.+++.+.. + +. ..-|.-++.|++-..-|.+. .++.+ -+..|.+.|+..-+++..
T Consensus 19 ~~~~p~~~~iq~~l~~~~~-~---~~--~~~k~~~~~l~~tl~~l~~~-------~~~~~--~~~~~~~~i~~ap~~~~~ 83 (1109)
T PRK10929 19 AATAPDEKQITQELEQAKA-A---KT--PAQAEIVEALQSALNWLEER-------KGSLE--RAKQYQQVIDNFPKLSAE 83 (1109)
T ss_pred cccCCCHHHHHHHHHHhhc-C---CC--hhhHHHHHHHHHHHHHHHHH-------HHHHH--HHHHHHHHHHHhHHHHHH
Confidence 3456888999988888754 2 11 22344444444333322211 11111 134455555555555555
Q ss_pred HHHHHHHHH----HHh----HHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Q psy15959 101 LAHHYEQEE----EFL----TNDLSRKLNQLTEEKYRLEQTIEQEQERV 141 (393)
Q Consensus 101 L~~~~EqEE----E~L----TN~L~KKL~qL~~EKv~LE~~LEqEQE~l 141 (393)
+..+++.+. .+. .+.|..++.+....-.++.+++-+++..+
T Consensus 84 ~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 84 LRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555544321 111 14566666666666666666666665544
No 132
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.36 E-value=23 Score=36.15 Aligned_cols=138 Identities=28% Similarity=0.413 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHhHHHHHHHHh
Q psy15959 57 ALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLS---RKLNQLTEEKYRLEQT 133 (393)
Q Consensus 57 ~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~---KKL~qL~~EKv~LE~~ 133 (393)
.||+|+..||.....|... =||-| |.+++.|.-++.--++|...+.-=||-||.+.. ..|.-|..|-.-|-..
T Consensus 3 ~Lq~eia~LrlEidtik~q-~qekE---~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~Sk 78 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQ-NQEKE---KKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSK 78 (305)
T ss_pred hHHHHHHHHHHHHHHHHHH-hHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHH
Confidence 3566666666554444332 13333 677788999998889999999988999998864 4666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHhHhHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy15959 134 IEQEQERVVNKLMRKIEKLEAETDAKQNN-------LEQLRREKVELENTLEQEQEA---LVNKLWKRMDKLEAEKRILQ 203 (393)
Q Consensus 134 LEqEQE~lVNkL~KkiekLeaEk~~~q~~-------L~qLrrEKVeLEn~LEqEQE~---LVNkLqKrmdkLe~EKr~LQ 203 (393)
||.|-.. -++|++|..++... .++-..-|-+||-++.++..- +-.++--.|..|......|-
T Consensus 79 Le~EKq~--------kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~Ls 150 (305)
T PF14915_consen 79 LEKEKQN--------KERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILS 150 (305)
T ss_pred HHHhHHH--------HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHH
Confidence 6544221 15666666666543 445566788888888888772 22233333334444444444
Q ss_pred Hhh
Q psy15959 204 IKL 206 (393)
Q Consensus 204 ~~L 206 (393)
++|
T Consensus 151 QqL 153 (305)
T PF14915_consen 151 QQL 153 (305)
T ss_pred HHH
Confidence 444
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.21 E-value=8.2 Score=38.42 Aligned_cols=77 Identities=27% Similarity=0.381 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh----
Q psy15959 86 TLMKKIQALKKEKETLAHHYEQEEEFLT--NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAK---- 159 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~EqEEE~LT--N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~---- 159 (393)
.|.+.|..|..+...|. +.|++|.. |.+...+.++.++...+.++++. ...++++|+.-..-.
T Consensus 75 ~l~~el~~le~e~~~l~---~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~--------~~~~L~~L~ktNv~n~~F~ 143 (314)
T PF04111_consen 75 ELDQELEELEEELEELD---EEEEEYWREYNELQLELIEFQEERDSLKNQYEY--------ASNQLDRLRKTNVYNDTFH 143 (314)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHCHHT--TTTTT--
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcCchhceee
Confidence 34444555666665554 23344444 89999999999999988888874 445555554322111
Q ss_pred -----------hhhHHHHHHhHhHH
Q psy15959 160 -----------QNNLEQLRREKVEL 173 (393)
Q Consensus 160 -----------q~~L~qLrrEKVeL 173 (393)
--.|-+|-..+|+-
T Consensus 144 I~hdG~fGTINGlRLGrl~~~~V~W 168 (314)
T PF04111_consen 144 IWHDGPFGTINGLRLGRLPNVPVEW 168 (314)
T ss_dssp EEEETTEEEETTEEE--BTTB---H
T ss_pred EeecCCeeeECCeeeccCCCCCCCh
Confidence 12566677778873
No 134
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=90.14 E-value=19 Score=36.37 Aligned_cols=119 Identities=23% Similarity=0.302 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 24 PVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAH 103 (393)
Q Consensus 24 ~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~ 103 (393)
.++..++...|..+..-....+..++.++.+++.|+..+...... +...--.+.-|+.|++++ +..+......+..
T Consensus 66 ~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~---~~~~~~~~~~~~~n~~~~-~~~~t~~la~~t~ 141 (301)
T PF06120_consen 66 EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ---LAEKGITENGYIINHLMS-QADATRKLAEATR 141 (301)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCCCcchHHHHHHHH-HHHHHHHHHHHHH
Confidence 345556666666666665555555555555555555555433211 111112234566664433 3333333333333
Q ss_pred HHHHHHHHhHH------HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Q psy15959 104 HYEQEEEFLTN------DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLM 146 (393)
Q Consensus 104 ~~EqEEE~LTN------~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~ 146 (393)
.+..+++.+.+ ..++.|.-+....+++-++...|+..+++.|.
T Consensus 142 ~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~ 190 (301)
T PF06120_consen 142 ELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNSLK 190 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 23444555555555555444455555554443
No 135
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=90.11 E-value=25 Score=36.27 Aligned_cols=69 Identities=25% Similarity=0.310 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-CCCCC-------CCCCCCCCCCc-cchhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLDQP-VSDPS-------SPHDMNNGDTA-SNLSTHIHSLRSEVMRLRNQLANTQQEH 253 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Leq~-vS~~~-------SP~~~~~~dt~-~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~ 253 (393)
|---|.|+..|..||+.|.+.|... |++-- --.|-|+.-.| -.|.-.-..|.+|+.+||.+|+.++...
T Consensus 61 vrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtA 138 (351)
T PF07058_consen 61 VRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTA 138 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557899999999999999999764 44311 11111111122 3456677889999999999999876543
No 136
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=90.07 E-value=16 Score=34.05 Aligned_cols=49 Identities=33% Similarity=0.365 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAE 77 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaE 77 (393)
+=+.|+++|.+-|.-||..++..+.-+.+|.+++..|......+....+
T Consensus 71 EEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 71 EEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666667777777777777777777666665444444333
No 137
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.04 E-value=36 Score=38.78 Aligned_cols=29 Identities=28% Similarity=0.194 Sum_probs=18.8
Q ss_pred HHHHHHHhhhhhHHHHHHhHhHHHHhHHH
Q psy15959 151 KLEAETDAKQNNLEQLRREKVELENTLEQ 179 (393)
Q Consensus 151 kLeaEk~~~q~~L~qLrrEKVeLEn~LEq 179 (393)
..-+....+|.+|+.-.+|+.-|.++|-|
T Consensus 505 eal~~~k~~q~kLe~sekEN~iL~itlrQ 533 (861)
T PF15254_consen 505 EALVNVKSLQFKLEASEKENQILGITLRQ 533 (861)
T ss_pred HHHHHHHHHhhhHHHHHhhhhHhhhHHHH
Confidence 33334456667777777777777777755
No 138
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.96 E-value=27 Score=38.81 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQ-NRVLKVELETYKLQLRALQEE 61 (393)
Q Consensus 27 ~e~~~~ri~sLqqe-nr~lk~ele~~k~R~k~LqeE 61 (393)
++-|...++-|.++ ........+.+..|++.|+.+
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~ 573 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQ 573 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555444 232333334444444444443
No 139
>KOG0288|consensus
Probab=89.94 E-value=20 Score=38.15 Aligned_cols=69 Identities=26% Similarity=0.202 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 31 QKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKET 100 (393)
Q Consensus 31 ~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~ 100 (393)
..+-....|....+..+++..-.+...+-.++-++|.++..|.+++ ++-|..-|.|++...+|+.+.+.
T Consensus 5 ~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~-~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 5 YSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKL-QEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777788888888888888888888877776654 34444445555555555554444
No 140
>KOG0976|consensus
Probab=89.66 E-value=45 Score=38.57 Aligned_cols=211 Identities=20% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHH 104 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~ 104 (393)
.+.+.+......|.--|.+|-.|+-....+++.+++++..+++.-...-...||=--|+--.-|| |+.+|.+|.-.
T Consensus 263 ~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmk----ltrqkadirc~ 338 (1265)
T KOG0976|consen 263 ASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMK----LTRQKADIRCA 338 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHH-------------HHHHHHHHHHHHHHHHHHhhh-----------
Q psy15959 105 YEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQE-------------RVVNKLMRKIEKLEAETDAKQ----------- 160 (393)
Q Consensus 105 ~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE-------------~lVNkL~KkiekLeaEk~~~q----------- 160 (393)
+ .|.-.=...+..|++.|-+++..++...-.=|| -+..+++.|||.|..-.-.+.
T Consensus 339 L-lEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kn 417 (1265)
T KOG0976|consen 339 L-LEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKN 417 (1265)
T ss_pred H-HHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHH
Q ss_pred ------hhHHHHHHhHhHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q psy15959 161 ------NNLEQLRREKVELENTLEQ-----------------EQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPH 217 (393)
Q Consensus 161 ------~~L~qLrrEKVeLEn~LEq-----------------EQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~ 217 (393)
++|+++..+-++++.+++. -+-.+|.+|+-.|+.|+..+.-=|
T Consensus 418 eL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeq-------------- 483 (1265)
T KOG0976|consen 418 ELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQ-------------- 483 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHH--------------
Q ss_pred CCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q psy15959 218 DMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNV 267 (393)
Q Consensus 218 ~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~ 267 (393)
.+.-|+-|+.+-..++..+..+..+---.|-.+.-.+
T Consensus 484 -------------e~emlKaen~rqakkiefmkEeiQethldyR~els~l 520 (1265)
T KOG0976|consen 484 -------------EYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSEL 520 (1265)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 141
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.52 E-value=39 Score=37.61 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Le 207 (393)
..|+.+|+++.......+.+++
T Consensus 649 ~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 649 QDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4466667777666666565665
No 142
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.33 E-value=18 Score=33.56 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRAL 58 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~L 58 (393)
++..++..+..++.+.+.++.++..+
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 143
>KOG4593|consensus
Probab=89.31 E-value=42 Score=37.70 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhhccc
Q psy15959 278 LQREVERREALCRHLSESES 297 (393)
Q Consensus 278 l~~E~erreal~r~lseses 297 (393)
|+.|+++.++=-+|+-..+|
T Consensus 280 LqeE~e~Lqskl~~~~~l~~ 299 (716)
T KOG4593|consen 280 LQEELEGLQSKLGRLEKLQS 299 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556665555555555555
No 144
>PRK01156 chromosome segregation protein; Provisional
Probab=89.26 E-value=39 Score=37.25 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=21.1
Q ss_pred cCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 19 MMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKN 64 (393)
Q Consensus 19 ~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~ 64 (393)
-++.++++.+....=+.....+...+..+++.++.+.+.+..+...
T Consensus 456 p~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 456 PVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred CCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788833333233444444444444444444444444444333
No 145
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=89.23 E-value=32 Score=36.16 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=20.2
Q ss_pred HHHHhHHHHHHHHHHHhHH-HHHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 108 EEEFLTNDLSRKLNQLTEE-KYRLEQTIEQEQERVVNKLMRKIE 150 (393)
Q Consensus 108 EEE~LTN~L~KKL~qL~~E-Kv~LE~~LEqEQE~lVNkL~Kkie 150 (393)
+++-+.+.+.+.+.+|++. ...|..+|++..+-+-.+|...+.
T Consensus 308 ~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~ 351 (582)
T PF09731_consen 308 LEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELR 351 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444 334555555555555544444443
No 146
>PRK01156 chromosome segregation protein; Provisional
Probab=89.08 E-value=40 Score=37.16 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC------C-CCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHH
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLDQP------V-SDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQ 250 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Leq~------v-S~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q 250 (393)
+..|.+.++.|..++..+...+++- . .-|.-|.....- +..-...+|..+..++..+...+..+.
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~-~~e~~~e~i~~~~~~i~~l~~~i~~l~ 489 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTL-GEEKSNHIINHYNEKKSRLEEKIREIE 489 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcC-ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555544432210 1 235455543321 233334445555555555555554444
No 147
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.03 E-value=20 Score=33.63 Aligned_cols=112 Identities=27% Similarity=0.348 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q psy15959 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDT 224 (393)
Q Consensus 145 L~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt 224 (393)
|..-|.+++.+...++.+|....++|..|.++ ..-+..+.+++..|.-+-..|..++.
T Consensus 60 L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~-----k~rl~~~ek~l~~Lk~e~evL~qr~~----------------- 117 (201)
T PF13851_consen 60 LSEPLKKAEEEVEELRKQLKNYEKDKQSLQNL-----KARLKELEKELKDLKWEHEVLEQRFE----------------- 117 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 33334444445555555666666666666653 23344456666666666655555544
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy15959 225 ASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESES 297 (393)
Q Consensus 225 ~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lseses 297 (393)
.|-.|-..|..+...+-.+...| .-..|+-|.+||+.=-+..|.--.+|++.-+
T Consensus 118 ---------kle~ErdeL~~kf~~~i~evqQk----------~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 118 ---------KLEQERDELYRKFESAIQEVQQK----------TGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23355555555555555554443 2356899999976543333333344544433
No 148
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.97 E-value=27 Score=34.96 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=16.3
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 120 LNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEA 154 (393)
Q Consensus 120 L~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLea 154 (393)
+..++.+...|...+..|...+...+...+..+.+
T Consensus 284 v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~ 318 (444)
T TIGR03017 284 YKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQ 318 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555554444444433333
No 149
>KOG1924|consensus
Probab=88.79 E-value=1.1 Score=50.45 Aligned_cols=8 Identities=25% Similarity=0.355 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q psy15959 324 SRPLSPGA 331 (393)
Q Consensus 324 ~~~~~p~~ 331 (393)
.-|..||.
T Consensus 526 ~iP~PP~~ 533 (1102)
T KOG1924|consen 526 GIPPPPPL 533 (1102)
T ss_pred CCCCCCCC
Confidence 33444443
No 150
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.38 E-value=25 Score=33.92 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
+.+|..|+..++.+++....+|.....++..|.++.+.+..++..|..+
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999998887776665544
No 151
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.34 E-value=50 Score=37.33 Aligned_cols=124 Identities=29% Similarity=0.338 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 72 IQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEK 151 (393)
Q Consensus 72 iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~Kkiek 151 (393)
=--++|.|- -.|.+.|+..-+.+..+.-++-+ |..+|-.=+.||+.-+.+-|..+- ..|.+..++.++
T Consensus 18 gwekae~e~----~~lk~~l~~~~~~~~~~e~r~~h----ld~aLkec~~qlr~~ree~eq~i~----~~~~~~s~e~e~ 85 (769)
T PF05911_consen 18 GWEKAEAEA----ASLKQQLEAATQQKLALEDRVSH----LDGALKECMRQLRQVREEQEQKIH----EAVAKKSKEWEK 85 (769)
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHhHHHHHHhhh----hhHHHHHHHHHHHHhhHHHHHHHH----HHHHHHhHHHHH
Confidence 344555553 36677788887777777777654 777887777777776653222221 223333333333
Q ss_pred ----HHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 152 ----LEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 152 ----LeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
|++....+...|..+..|.-.|-++| ++-+.++-.|.+.-...+++...|+.+|+.
T Consensus 86 ~~~~le~~l~e~~~~l~~~~~e~~~l~~~l-~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~ 145 (769)
T PF05911_consen 86 IKSELEAKLAELSKRLAESAAENSALSKAL-QEKEKLIAELSEEKSQAEAEIEDLMARLES 145 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33334556678888888988888888 778888888888888889888888888874
No 152
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.29 E-value=4.8 Score=44.28 Aligned_cols=83 Identities=28% Similarity=0.421 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q psy15959 187 KLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKN 266 (393)
Q Consensus 187 kLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~ 266 (393)
+|.+++++|+.|.+.|+..++ .|+.|+..|+++|..+..+...+. .--.+..+
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~e--------------------------e~k~eie~L~~~l~~~~r~~~~~~-~~~rei~~ 478 (652)
T COG2433 426 KLEETVERLEEENSELKRELE--------------------------ELKREIEKLESELERFRREVRDKV-RKDREIRA 478 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHH
Confidence 345677778888777775555 355566666666655554444321 11245556
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy15959 267 VREENLRLQRKLQREVERREALCRHLSESE 296 (393)
Q Consensus 267 ~reeN~rl~~kl~~E~erreal~r~lsese 296 (393)
...++.+|.++|..+-.+++.|-+.|....
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998887665
No 153
>KOG1265|consensus
Probab=87.73 E-value=63 Score=37.77 Aligned_cols=114 Identities=29% Similarity=0.337 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHH
Q psy15959 52 KLQLRALQEENKNLRQTSVNIQA------KAEQEEEFISNTLMKKIQALKKEKET----LAHHYEQEEEFLTNDLSRKLN 121 (393)
Q Consensus 52 k~R~k~LqeEnr~LR~~sv~iq~------kaEqEEEfItNtL~KKL~~LkkEKe~----L~~~~EqEEE~LTN~L~KKL~ 121 (393)
..+-.+|.+....|+......|. |.--|- -+..|+++++.-..|... +-.+.|+| ...+.--.+-|.
T Consensus 1055 e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~--e~kElk~~l~kkr~e~ik~~~~~kdK~e~e-r~~rE~n~s~i~ 1131 (1189)
T KOG1265|consen 1055 ELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEK--ETKELKKKLDKKRMEDIKVDKVIKDKAERE-RRKRELNSSNIK 1131 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhccccccHHHHH-HHHHHHHHHHHH
Confidence 45566666666666644333222 111111 245566666655555443 22333332 223333345577
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHH
Q psy15959 122 QLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQE 182 (393)
Q Consensus 122 qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE 182 (393)
..-.+...|+.+..+.++.|+.+=... |.||..+...|.-.+++|-+
T Consensus 1132 ~~V~e~krL~~~~~k~~e~L~k~~~~~--------------leql~e~~kal~~e~~~~~e 1178 (1189)
T KOG1265|consen 1132 EFVEERKRLAEKQSKRQEQLVKKHLEV--------------LEQLAEEEKALDAEAEQEYE 1178 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHH
Confidence 777788888888888888777443333 45556554445544444433
No 154
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=87.53 E-value=26 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=14.1
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 264 EKNVREENLRLQRKLQREVERREAL 288 (393)
Q Consensus 264 e~~~reeN~rl~~kl~~E~erreal 288 (393)
-.+|..||.+|+..|..=+....+|
T Consensus 158 ~~~i~~EN~~L~k~L~~l~~e~~~L 182 (206)
T PF14988_consen 158 TRSIKRENQQLRKELLQLIQEAQKL 182 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777655444433333
No 155
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.31 E-value=4.7 Score=34.85 Aligned_cols=54 Identities=35% Similarity=0.448 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15959 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQE 79 (393)
Q Consensus 26 ~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqE 79 (393)
+.-++..++..+.++...+=.++..+|..+..|-+||..||..+..+...+.+.
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999888777665543
No 156
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.22 E-value=0.18 Score=55.85 Aligned_cols=130 Identities=25% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 31 QKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEE 110 (393)
Q Consensus 31 ~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE 110 (393)
-+.+..+..++..++..++.....+..|...+..|-.....+...++. .+.-.+.|.+....|....+++...++.| -
T Consensus 179 Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee-~e~~~~~l~r~k~~L~~qLeelk~~leeE-t 256 (859)
T PF01576_consen 179 EKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEE-AESQLSQLQREKSSLESQLEELKRQLEEE-T 256 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHhH-h
Confidence 345666667777777777777777777777777777777777777754 44566777888888888888888888654 4
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy15959 111 FLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNL 163 (393)
Q Consensus 111 ~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L 163 (393)
..-..|..++..+..+...|..+|+.|++... .|.+++.++.++....+.++
T Consensus 257 r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~-~l~~qlsk~~~El~~~k~K~ 308 (859)
T PF01576_consen 257 RAKQALEKQLRQLEHELEQLREQLEEEEEAKS-ELERQLSKLNAELEQWKKKY 308 (859)
T ss_dssp -----------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHhhHHHHHHHHH
Confidence 55579999999999999999999998888654 78888888887765444433
No 157
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.20 E-value=3.3 Score=34.72 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
++|-.+|...-.....|++|++.+|.++..|.+++..++..
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~ 47 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777777777777777777777777777777776665544
No 158
>KOG4673|consensus
Probab=86.95 E-value=62 Score=36.89 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHhHH
Q psy15959 67 QTSVNIQAKAEQEEEFISN 85 (393)
Q Consensus 67 ~~sv~iq~kaEqEEEfItN 85 (393)
..-.++++.++.-++|.+|
T Consensus 523 E~I~k~~ae~~rq~~~~~~ 541 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSN 541 (961)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3344556666666666666
No 159
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.71 E-value=40 Score=34.44 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=9.8
Q ss_pred cccccCCCCCCCCCCCCC
Q psy15959 314 MRLVGSSPSSSRPLSPGA 331 (393)
Q Consensus 314 ~r~~~~~~~~~~~~~p~~ 331 (393)
.|-|+....+..|.+|..
T Consensus 396 i~vi~~A~~P~~P~~P~~ 413 (498)
T TIGR03007 396 FRIIDPPIVPSKPSGPNR 413 (498)
T ss_pred EEEeCCCCCCCCCCCCcH
Confidence 355555444456666654
No 160
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.38 E-value=38 Score=33.87 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQ 92 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~ 92 (393)
++.+..+.++.++...-.-...+..=|..||..|+.++..+......-+.-=.-++..+...|.
T Consensus 54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~ 117 (309)
T PF09728_consen 54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLK 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333444555677788888888877766655444444444444444333
No 161
>KOG2751|consensus
Probab=85.86 E-value=36 Score=36.35 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 30 LQKRIESLQQQNRVLKVELETYKLQLRALQEENKNL 65 (393)
Q Consensus 30 ~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~L 65 (393)
...=++.|..+.+.++.+.++|+.=+.-|.+.++..
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~ 176 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV 176 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 333445566677777777777777777777666554
No 162
>KOG0978|consensus
Probab=85.67 E-value=67 Score=36.10 Aligned_cols=161 Identities=19% Similarity=0.197 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhHHHHHHHHhHHHHH------HHHHH
Q psy15959 71 NIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLT-NDLSRKLNQLTEEKYRLEQTIEQEQ------ERVVN 143 (393)
Q Consensus 71 ~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LT-N~L~KKL~qL~~EKv~LE~~LEqEQ------E~lVN 143 (393)
.+..-+|..+|-+++-+..+=. ++...+..-++..--... ++|..+...|......|-...+..+ |-.+.
T Consensus 458 t~gsA~ed~Qeqn~kL~~el~e---kdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~ 534 (698)
T KOG0978|consen 458 TIGSAFEDMQEQNQKLLQELRE---KDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQER 534 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556655555444432221 222334444443322222 5666666666666665544443322 22223
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGD 223 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~d 223 (393)
.|+.....+..+...++..++.+++.=+++.+. +-.|+-++++.++....++..+... +.
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~--------~~~Lq~~~ek~~~~le~i~~~~~e~------------~~ 594 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQS--------LEDLQIELEKSEAKLEQIQEQYAEL------------EL 594 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH------------HH
Confidence 334444444444445555555555555554443 3345555566555555555554310 01
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 224 TASNLSTHIHSLRSEVMRLRNQLANTQQEHT 254 (393)
Q Consensus 224 t~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~ 254 (393)
.-+.+.--..+|-.|+.+|+.+|.......+
T Consensus 595 ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 595 ELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1111222235666888888888888886655
No 163
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.54 E-value=26 Score=31.31 Aligned_cols=55 Identities=29% Similarity=0.355 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 43 VLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 43 ~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~ 105 (393)
.||.+.+....|+..+...++.+-..+..+ |.| .+.|.+|+..|..+.+.+...+
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~------E~E--I~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQK------EQE--ITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777777777776654433 222 4577777777777776665544
No 164
>KOG4807|consensus
Probab=85.44 E-value=57 Score=35.07 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQE 252 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e 252 (393)
.+.|++|+.||+-||..|.-++..
T Consensus 518 EsEiQYLKqEissLkDELQtalrD 541 (593)
T KOG4807|consen 518 ESEIQYLKQEISSLKDELQTALRD 541 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999877754
No 165
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=85.41 E-value=19 Score=37.99 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=57.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhhHHHHHHhH--hHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 129 RLEQTIEQEQERVVNKLMRKI------------EKLEAETDAKQNNLEQLRREK--VELENTLEQEQEALVNKLWKRMDK 194 (393)
Q Consensus 129 ~LE~~LEqEQE~lVNkL~Kki------------ekLeaEk~~~q~~L~qLrrEK--VeLEn~LEqEQE~LVNkLqKrmdk 194 (393)
.+.+.|=.+-|.+||.|..++ +..+.....-+..|..+|... ++.+.+.+. +=.+|++|+.++..
T Consensus 219 ~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~-~~~lI~~Le~qLa~ 297 (434)
T PRK15178 219 FFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITA-IYQLIAGFETQLAE 297 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHH-HHHHHHHHHHHHHH
Confidence 345555566666666665544 111111122234455555443 233332222 33578888888888
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHH
Q psy15959 195 LEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLA 247 (393)
Q Consensus 195 Le~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~ 247 (393)
++.+...|+.-+ .|.+|. ...+.+.|..|+.+|+.+|.++.
T Consensus 298 ~~aeL~~L~~~~-----~p~sPq-------V~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 298 AKAEYAQLMVNG-----LDQNPL-------IPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHhhc-----CCCCCc-------hhHHHHHHHHHHHHHHHHHHHhh
Confidence 888877776443 355565 23456666666666666666665
No 166
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.06 E-value=47 Score=33.74 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccch
Q psy15959 251 QEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSL 299 (393)
Q Consensus 251 ~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsesessl 299 (393)
+++..+|..+..+--.+|.+==-++.++..-......+...+-+....+
T Consensus 189 qe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 189 QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6777788888888888888877777777766667777766666555544
No 167
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=85.04 E-value=7 Score=34.16 Aligned_cols=53 Identities=30% Similarity=0.411 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15959 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQ 78 (393)
Q Consensus 26 ~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEq 78 (393)
+.-++-.++..|.++...+=.++..+|..+..|-+||..|+..+..+.....+
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999988777666554
No 168
>KOG1853|consensus
Probab=84.89 E-value=48 Score=33.74 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 45 KVELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 45 k~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
..+|..++.|++.|+-+|..|+.....+..+
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888765555444
No 169
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.77 E-value=14 Score=39.61 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
|..|--+++.+|.++..+...++.|.+||..||+..-.|..+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 445555666667777788888888888888887654444333
No 170
>KOG1850|consensus
Probab=84.62 E-value=55 Score=34.19 Aligned_cols=61 Identities=31% Similarity=0.540 Sum_probs=40.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhH-HHHHHHHHHHHHHHHHHHhhhhcc
Q psy15959 227 NLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENL-RLQRKLQREVERREALCRHLSESE 296 (393)
Q Consensus 227 ~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~-rl~~kl~~E~erreal~r~lsese 296 (393)
.++-||..|-.|--..|.+- +.+.++---..+++.+|.++. +||.| ++|.+.|||.|---.
T Consensus 254 kmtKk~kklEKE~l~wr~K~-----e~aNk~vL~la~ekt~~~k~~~~lq~k----iq~LekLcRALq~er 315 (391)
T KOG1850|consen 254 KMTKKIKKLEKETLIWRTKW-----ENANKAVLQLAEEKTVRDKEYETLQKK----IQRLEKLCRALQTER 315 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence 34556666655555555443 345566666788999998876 44544 568999999986543
No 171
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=84.61 E-value=65 Score=35.00 Aligned_cols=60 Identities=37% Similarity=0.494 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 140 RVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 140 ~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
.|+|+|...|+.|-.+| -+..=||-+++++|..=||.+.|. +|++..-+.||..||-.|.
T Consensus 362 DiinkLk~niEeLIedK-------Y~viLEKnd~~k~lqnLqe~la~t-qk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 362 DIINKLKENIEELIEDK-------YRVILEKNDIEKTLQNLQEALANT-QKHLQESRNEKETLQLELK 421 (527)
T ss_pred HHHHHHHHHHHHHHHhH-------hHhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHH
Confidence 57788888888886655 345668999999999999999886 8888888899988887775
No 172
>KOG1899|consensus
Probab=84.22 E-value=80 Score=35.72 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=29.0
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 22 PSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 22 ~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
+|--.+++|+.|+.-|+-....|-...-.+.-++.+--+-++.|-
T Consensus 101 ~s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE 145 (861)
T KOG1899|consen 101 VSCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLE 145 (861)
T ss_pred ccCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHH
Confidence 355678899999888887766665555555555555555555544
No 173
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=83.88 E-value=6.5 Score=33.27 Aligned_cols=61 Identities=31% Similarity=0.424 Sum_probs=45.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESE 296 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsese 296 (393)
......|+.|+..|+.++ +++-.+.+|+.|-..++++|.|||.-- +.-=||.+.-..|+.+
T Consensus 23 ~~e~~~L~eEI~~Lr~qv-----e~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~ 83 (86)
T PF12711_consen 23 EEENEALKEEIQLLREQV-----EHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELR 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 444578888888888766 688999999999999999999998643 4334566666655543
No 174
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=83.85 E-value=49 Score=32.96 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHH
Q psy15959 26 TREQLQKRIESLQQQNRVLKVELET----YKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 26 ~~e~~~~ri~sLqqenr~lk~ele~----~k~R~k~LqeEnr~LR~~sv~i 72 (393)
+.++|.++...|...|..|..++.. -..++..|-+.-..++.+...|
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~l 57 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDIL 57 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888866533 3566666666666665554333
No 175
>KOG0963|consensus
Probab=83.75 E-value=78 Score=35.24 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCC---CCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy15959 189 WKRMDKLEAEKRILQIKLDQPVSDP---SSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEK 265 (393)
Q Consensus 189 qKrmdkLe~EKr~LQ~~Leq~vS~~---~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~ 265 (393)
+.++..|++|...|...|...-+.. .+|-.-..+..-......|..|-.+|.+++.-+...-..|...+...+.+..
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~ 327 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELK 327 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777776665432221 1121100011222356778888888888888888888888888888888777
Q ss_pred HHHHHhHHHHHHHH
Q psy15959 266 NVREENLRLQRKLQ 279 (393)
Q Consensus 266 ~~reeN~rl~~kl~ 279 (393)
..+.+=-.|..+|+
T Consensus 328 ~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 328 AKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHh
Confidence 77766555555554
No 176
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.70 E-value=61 Score=34.00 Aligned_cols=55 Identities=35% Similarity=0.360 Sum_probs=38.6
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q psy15959 227 NLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHL 292 (393)
Q Consensus 227 ~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~l 292 (393)
.|..-|.+++.|..+|.-+|.+..++-.+|. ||+..|-|-|...+.+-.+|...-
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke-----------eesq~LnrELaE~layqq~L~~ey 185 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKE-----------EESQTLNRELAEALAYQQELNDEY 185 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999888862 445555555555555555555443
No 177
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=83.59 E-value=36 Score=31.31 Aligned_cols=71 Identities=25% Similarity=0.422 Sum_probs=48.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHH
Q psy15959 171 VELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQ 250 (393)
Q Consensus 171 VeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q 250 (393)
..+|..+++|-. -|+.+++.|+.+.+.|+.++.. +..++.+|...-..|+..+..+.
T Consensus 81 ~~~Ed~~~~e~k----~L~~~v~~Le~e~r~L~~~~~~-------------------~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 81 LELEDQWRQERK----DLQSQVEQLEEENRQLELKLKN-------------------LSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh-------------------hhhhccccchhHHHHHHHHHHHH
Confidence 344555555544 4678899999999999987752 22344445555667788888888
Q ss_pred HHHHHHHHHhHHHH
Q psy15959 251 QEHTEKMERYVKDE 264 (393)
Q Consensus 251 ~e~~~k~~~~~~ee 264 (393)
..+++-|..|..-.
T Consensus 138 er~~e~l~~~~e~v 151 (158)
T PF09744_consen 138 ERERELLRKLKEHV 151 (158)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776543
No 178
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.56 E-value=56 Score=33.40 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 30 LQKRIESLQQQNRVLKVELETYKLQLRALQEEN 62 (393)
Q Consensus 30 ~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEn 62 (393)
....|.+|..++..|+.|...-.-++.+|..-.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaL 48 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAAL 48 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356899999999999988655555566555433
No 179
>KOG4360|consensus
Probab=83.46 E-value=76 Score=34.91 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVEL 48 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~el 48 (393)
|-|+.+++.+..+|-+||.+.
T Consensus 162 EaL~ekLk~~~een~~lr~k~ 182 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKA 182 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHH
Confidence 344445555555555555443
No 180
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=82.93 E-value=90 Score=35.35 Aligned_cols=61 Identities=28% Similarity=0.404 Sum_probs=36.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHH-HHHHHHHHHHHHHh
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRK-LQREVERREALCRH 291 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~k-l~~E~erreal~r~ 291 (393)
..++..|++.|+.|...+..-+++..- +.++. +.+..+-+==|...| |+.|+.|--...++
T Consensus 330 ~~~~~qL~~qVAsLQeev~sq~qEqai-Lq~SL-qDK~AElevERv~sktLQ~ELsrAqea~~~ 391 (739)
T PF07111_consen 330 RDSVKQLRGQVASLQEEVASQQQEQAI-LQHSL-QDKAAELEVERVGSKTLQAELSRAQEARRR 391 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 567888888888888888777766554 44454 333333333333333 56665555544444
No 181
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.88 E-value=48 Score=32.17 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=17.9
Q ss_pred hhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 161 NNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAE 198 (393)
Q Consensus 161 ~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~E 198 (393)
.-+.+.+.|+....+.+.+=++ -+.+|...++.+..+
T Consensus 67 ~iIkqa~~er~~~~~~i~r~~e-ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 67 NIIKQAESERNKRQEKIQRLYE-EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344555555555544433332 445555555555543
No 182
>KOG4302|consensus
Probab=82.50 E-value=89 Score=34.97 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=48.4
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH----HHhHHHHHHHHHHHHHH
Q psy15959 23 SPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSV-NIQAKAEQEE----EFISNTLMKKIQALKKE 97 (393)
Q Consensus 23 s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv-~iq~kaEqEE----EfItNtL~KKL~~LkkE 97 (393)
|-...|+|+.++..|+++-.....+...++.-+.+|.+.+-.--...+ .++....-.. -||++..+.||+...+.
T Consensus 158 sl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~ 237 (660)
T KOG4302|consen 158 SLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKK 237 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHH
Confidence 334578899999999998877777777777777777776633322222 3332222222 58888888777766553
Q ss_pred H
Q psy15959 98 K 98 (393)
Q Consensus 98 K 98 (393)
-
T Consensus 238 l 238 (660)
T KOG4302|consen 238 L 238 (660)
T ss_pred H
Confidence 3
No 183
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.48 E-value=34 Score=38.13 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRI 201 (393)
Q Consensus 145 L~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~ 201 (393)
+.+...+++..+..+..++.+|..+|..+...+.+|.+.++....++++.+-.+.+.
T Consensus 534 ~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 534 LEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344445555566777888888999999999999999999998888887777653
No 184
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.29 E-value=23 Score=33.69 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=12.8
Q ss_pred HHHHHHhhhhhHHHHHHhHhHHHHhHHHHH
Q psy15959 152 LEAETDAKQNNLEQLRREKVELENTLEQEQ 181 (393)
Q Consensus 152 LeaEk~~~q~~L~qLrrEKVeLEn~LEqEQ 181 (393)
|+.+...++++|..++.+-..|+..+...+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333344444444444444444333333
No 185
>KOG0239|consensus
Probab=82.22 E-value=88 Score=34.77 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy15959 187 KLWKRMDKLE 196 (393)
Q Consensus 187 kLqKrmdkLe 196 (393)
.|+.+|..|.
T Consensus 245 ~l~~~l~~l~ 254 (670)
T KOG0239|consen 245 ALQQELEELK 254 (670)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 186
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.85 E-value=36 Score=37.79 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
...+++..+..+-..|+..|+ |+...+..|.+++..|
T Consensus 471 ~~~rei~~~~~~I~~L~~~L~-e~~~~ve~L~~~l~~l 507 (652)
T COG2433 471 RKDREIRARDRRIERLEKELE-EKKKRVEELERKLAEL 507 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 334556666666666666665 3444455666665554
No 187
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.82 E-value=45 Score=31.07 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 142 VNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 142 VNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
.+.+..+|..|+.++..++..+..++.....++...+........+.+..++.|......|...|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666767766666666666666665555555555545544555566666666666666555543
No 188
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.79 E-value=45 Score=31.06 Aligned_cols=67 Identities=24% Similarity=0.436 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHhHhHHHHhHH
Q psy15959 111 FLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL-EAETDAKQNNLEQLRREKVELENTLE 178 (393)
Q Consensus 111 ~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL-eaEk~~~q~~L~qLrrEKVeLEn~LE 178 (393)
...+.|..++..|..++.+|+..+.. ...-...+.++.+.. ..+....+.+++.|++....|.+.|+
T Consensus 120 ~~~~~l~~~i~~L~~e~~~L~~~~~~-l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 120 QGKQELEEEIEELEEEKEELEKQVQE-LKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777666555431 111111223333222 12223345566666666666555554
No 189
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.54 E-value=37 Score=33.98 Aligned_cols=89 Identities=24% Similarity=0.364 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15959 43 VLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQ 122 (393)
Q Consensus 43 ~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~q 122 (393)
.+|..++.+|.+...++.|+..|+.....+++.+| .++.+|..|..|+..|....- .|--+...
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~e--------e~~erlk~le~E~s~LeE~~~--------~l~~ev~~ 195 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYE--------EVQERLKRLEVENSRLEEMLK--------KLPGEVYD 195 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--------hchhHHHH
Confidence 45555566666666666666666666666655543 244455555555544433221 12223334
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHH
Q psy15959 123 LTEEKYRLEQTIEQEQERVVNKLMR 147 (393)
Q Consensus 123 L~~EKv~LE~~LEqEQE~lVNkL~K 147 (393)
|++--.+|+-.+|-=.++++.+||+
T Consensus 196 L~~r~~ELe~~~El~e~~~i~dl~~ 220 (290)
T COG4026 196 LKKRWDELEPGVELPEEELISDLVK 220 (290)
T ss_pred HHHHHHHhcccccchHHHHHHHHHH
Confidence 4444444444444444555556665
No 190
>PRK11519 tyrosine kinase; Provisional
Probab=81.16 E-value=76 Score=34.73 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEE 61 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeE 61 (393)
++.|.++...++.+++....++...+.+
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333
No 191
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.16 E-value=2.8 Score=40.73 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=33.6
Q ss_pred cCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 19 MMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNL 65 (393)
Q Consensus 19 ~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~L 65 (393)
|+|.=.-=||-++.|+..|++|++.++.++..++..++.|+.+|-+|
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333335899999999999999888887766666666666666554
No 192
>PLN03188 kinesin-12 family protein; Provisional
Probab=80.98 E-value=1.4e+02 Score=36.08 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=66.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH---HHH
Q psy15959 75 KAEQEEEFISNTLMKKIQALKKEKETLAHHYEQ-----EEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVN---KLM 146 (393)
Q Consensus 75 kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~Eq-----EEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVN---kL~ 146 (393)
=++=||-|+ .|+-|=.+++.=..+.-+.+.+ =+-..-|.|-..|..|+-|+. .|-+|+.. .|+
T Consensus 1116 ya~l~ek~~--~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ere-------ker~~~~~enk~l~ 1186 (1320)
T PLN03188 1116 YADLEEKHI--QLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVERE-------KERRYLRDENKSLQ 1186 (1320)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHH
Confidence 344566664 6776666555555554433332 134556889999998887774 33344331 133
Q ss_pred HHHHHHHHHHHhhhhhHHHHHH----hHhHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh
Q psy15959 147 RKIEKLEAETDAKQNNLEQLRR----EKVELENTLEQEQEALVNKLWKRMDKLEA----EKRILQIKL 206 (393)
Q Consensus 147 KkiekLeaEk~~~q~~L~qLrr----EKVeLEn~LEqEQE~LVNkLqKrmdkLe~----EKr~LQ~~L 206 (393)
-||..--.-..+-=+=|.|||. .-+.-++++..|||. .++.|+|++|.. |.-.|.+.|
T Consensus 1187 ~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~--~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1187 AQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEA--AEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3331110001122234666664 345556777778876 788999999974 333444444
No 193
>KOG0804|consensus
Probab=80.90 E-value=88 Score=33.87 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQE 182 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE 182 (393)
+|.+..+.+.+...++.+++.-|...=-+|.=.|+..|+
T Consensus 418 kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqk 456 (493)
T KOG0804|consen 418 KLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQK 456 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhh
Confidence 333333333333444444444444444445555555444
No 194
>KOG0946|consensus
Probab=80.87 E-value=1.2e+02 Score=35.26 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccch
Q psy15959 273 RLQRKLQREVERREALCRHLSESESSL 299 (393)
Q Consensus 273 rl~~kl~~E~erreal~r~lsesessl 299 (393)
.+.--+..--+...||.+.++..+--.
T Consensus 915 e~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 915 ELLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 333334434456677777777665544
No 195
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.71 E-value=85 Score=33.58 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=5.7
Q ss_pred HHHHHHHhHHHHHH
Q psy15959 126 EKYRLEQTIEQEQE 139 (393)
Q Consensus 126 EKv~LE~~LEqEQE 139 (393)
+-...|++|++-.+
T Consensus 77 rL~qrE~rL~qRee 90 (514)
T TIGR03319 77 ELQRLERRLLQREE 90 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 196
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.62 E-value=39 Score=29.57 Aligned_cols=39 Identities=33% Similarity=0.501 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQE 182 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE 182 (393)
+|..+++.++.+....+.+..++...-..++.++-.+.+
T Consensus 77 rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 77 RLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444555555544444444444443
No 197
>KOG0243|consensus
Probab=80.48 E-value=1.3e+02 Score=35.48 Aligned_cols=90 Identities=20% Similarity=0.317 Sum_probs=46.0
Q ss_pred cCCCCcCCHHH------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHH----
Q psy15959 19 MMPPSPVTREQ------LQKRIESLQQQNRVLKVELE---TYKLQLRALQEENKNLRQTSVNIQA---KAEQEEEF---- 82 (393)
Q Consensus 19 ~~p~s~~~~e~------~~~ri~sLqqenr~lk~ele---~~k~R~k~LqeEnr~LR~~sv~iq~---kaEqEEEf---- 82 (393)
+|-|++..-|+ |..|.+..... =+.. +=+.=++.|-+|+.+||.......- .+=.||-|
T Consensus 366 TiSPa~~~lEETlSTLEYA~RAKnIkNK-----PevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e 440 (1041)
T KOG0243|consen 366 TISPAKHNLEETLSTLEYAHRAKNIKNK-----PEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEE 440 (1041)
T ss_pred EeCCCcccHHHHHHHHHHHHHhhhccCC-----CccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHH
Confidence 45567666664 55555444321 1111 2233455666666666654333322 12223333
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy15959 83 -ISNTLMKKIQALKKEKETLAHHYEQEEEFLT 113 (393)
Q Consensus 83 -ItNtL~KKL~~LkkEKe~L~~~~EqEEE~LT 113 (393)
--+....+|+++..+.+.+..++..=.|++.
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456667777777777777766665444444
No 198
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.08 E-value=1.1e+02 Score=34.40 Aligned_cols=8 Identities=50% Similarity=1.298 Sum_probs=6.1
Q ss_pred CCCCCCcc
Q psy15959 340 RCFACGQT 347 (393)
Q Consensus 340 ~~~~~~~~ 347 (393)
-||-||+-
T Consensus 459 ~CPvCg~~ 466 (908)
T COG0419 459 KCPVCGQE 466 (908)
T ss_pred CCCCCCCC
Confidence 49999954
No 199
>KOG3915|consensus
Probab=79.93 E-value=24 Score=38.32 Aligned_cols=41 Identities=32% Similarity=0.290 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHH
Q psy15959 84 SNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ 138 (393)
Q Consensus 84 tNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQ 138 (393)
+.||+.-|+.|-+--.+.+...| .|++.||.+|-..+=+|+
T Consensus 501 ~eTll~niq~llkva~dnar~qe--------------kQiq~Ek~ELkmd~lrer 541 (641)
T KOG3915|consen 501 IETLLTNIQGLLKVAIDNARAQE--------------KQIQLEKTELKMDFLRER 541 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 45777777777775555554443 356666665554444443
No 200
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.91 E-value=26 Score=37.62 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=31.7
Q ss_pred cCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 24 PVTREQLQK---RIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 24 ~~~~e~~~~---ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
.++-|+++. .-+.=..-.|+|=-.+..++.+...|..+|+.|+..+..|+.+
T Consensus 41 ~ltpee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 41 ELSPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred cCCcchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566544 2233344556666666677777777777777777666555444
No 201
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.76 E-value=17 Score=29.57 Aligned_cols=34 Identities=38% Similarity=0.425 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
|..|+.++..||.+-..+......|.++|..|+.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444443
No 202
>KOG0018|consensus
Probab=79.73 E-value=1.4e+02 Score=35.43 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhcccchhhhhhhccH
Q psy15959 282 VERREALCRHLSESESSLEMEEERHYN 308 (393)
Q Consensus 282 ~erreal~r~lsesesslE~~eer~fn 308 (393)
+.=...|.++++--||.+|--+.-+.|
T Consensus 869 ~~~~tkl~~~i~~~es~ie~~~~er~~ 895 (1141)
T KOG0018|consen 869 VKELTKLDKEITSIESKIERKESERHN 895 (1141)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 344456778888778877755333335
No 203
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.54 E-value=83 Score=35.27 Aligned_cols=72 Identities=25% Similarity=0.392 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 85 NTLMKKIQALKKEKETLAHH---YEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAET 156 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~---~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk 156 (393)
|.|+.+|.+.+++-+..... ..+|-+.+-+.|.++.++|..++..+..++.+|.+.++....++++++-.+.
T Consensus 519 ~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444433333222 2244555667788888888888888888888888888888888877764443
No 204
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=79.52 E-value=1.2e+02 Score=34.53 Aligned_cols=70 Identities=27% Similarity=0.405 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHhHhHHHHhHHHHH------HHHHHHHHHHHHHHHH----HHH
Q psy15959 138 QERVVNKLMRKIEKLEAETD-------AKQNNLEQLRREKVELENTLEQEQ------EALVNKLWKRMDKLEA----EKR 200 (393)
Q Consensus 138 QE~lVNkL~KkiekLeaEk~-------~~q~~L~qLrrEKVeLEn~LEqEQ------E~LVNkLqKrmdkLe~----EKr 200 (393)
.+|.+++.-++|.-|+.... .+-..++.|..+..-|-..+-.|- +--||+|+..|+.+.. +..
T Consensus 578 ~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~ 657 (786)
T PF05483_consen 578 IECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETD 657 (786)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35666666666655544432 333445566666555555555443 5567888877776654 444
Q ss_pred HHHHhhc
Q psy15959 201 ILQIKLD 207 (393)
Q Consensus 201 ~LQ~~Le 207 (393)
.++..|+
T Consensus 658 ~~~keie 664 (786)
T PF05483_consen 658 KYQKEIE 664 (786)
T ss_pred HHHHHHH
Confidence 5666565
No 205
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.43 E-value=41 Score=32.04 Aligned_cols=30 Identities=13% Similarity=0.136 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHhHHH
Q psy15959 145 LMRKIEKLEAETDAKQNNLEQLRREKVELE 174 (393)
Q Consensus 145 L~KkiekLeaEk~~~q~~L~qLrrEKVeLE 174 (393)
|..+..+|..+....+.+++.|..+..++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 206
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=79.03 E-value=29 Score=31.75 Aligned_cols=66 Identities=33% Similarity=0.398 Sum_probs=41.0
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDK 194 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdk 194 (393)
.|..+|++|++-|. +....+....+=..+++.+||-|..|||.|+-.|-.=|+.+- -|+-+-..
T Consensus 10 ~LInrInelQQaKK---------------k~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~-iLqlhcqe 73 (134)
T PF15233_consen 10 DLINRINELQQAKK---------------KSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLR-ILQLHCQE 73 (134)
T ss_pred HHHHHHHHHHHHHH---------------HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34556666666553 223333333333467788899999999999998887777743 44444333
Q ss_pred HH
Q psy15959 195 LE 196 (393)
Q Consensus 195 Le 196 (393)
-+
T Consensus 74 ke 75 (134)
T PF15233_consen 74 KE 75 (134)
T ss_pred HH
Confidence 33
No 207
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.99 E-value=7.8 Score=29.64 Aligned_cols=29 Identities=38% Similarity=0.636 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 30 LQKRIESLQQQNRVLKVELETYKLQLRAL 58 (393)
Q Consensus 30 ~~~ri~sLqqenr~lk~ele~~k~R~k~L 58 (393)
|..++..|..+|..|+.++..++..+..|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333333333
No 208
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.90 E-value=35 Score=33.34 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=37.6
Q ss_pred hhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 161 NNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 161 ~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
.+-||+|.-..+||..+ ..+...+..|+..+++|.++.-.|=+|+
T Consensus 86 sQRDRFR~Rn~ELE~el-r~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEEL-RKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998 6777788899999999998877776664
No 209
>PRK12704 phosphodiesterase; Provisional
Probab=78.82 E-value=98 Score=33.18 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=6.4
Q ss_pred hHHHHHHHHhHHHHHH
Q psy15959 124 TEEKYRLEQTIEQEQE 139 (393)
Q Consensus 124 ~~EKv~LE~~LEqEQE 139 (393)
.++....|++|.+..+
T Consensus 81 e~~L~qrE~rL~~Ree 96 (520)
T PRK12704 81 RNELQKLEKRLLQKEE 96 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444333
No 210
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.56 E-value=45 Score=29.15 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 230 THIHSLRSEVMRLRNQLANTQQEHTEKMERY 260 (393)
Q Consensus 230 ~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~ 260 (393)
.-+..++.|+.+++..+......+.+.|.+-
T Consensus 108 ~~~k~~kee~~klk~~~~~~~tq~~~e~rkk 138 (151)
T PF11559_consen 108 AKLKQEKEELQKLKNQLQQRKTQYEHELRKK 138 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888887777666654443
No 211
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=78.55 E-value=87 Score=34.34 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15959 46 VELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 46 ~ele~~k~R~k~LqeEnr~LR 66 (393)
.++..++.++...+......|
T Consensus 274 ~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 274 RQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 212
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.49 E-value=83 Score=35.24 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=36.1
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 107 QEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEA 154 (393)
Q Consensus 107 qEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLea 154 (393)
+|-+-+-+.|..++.+|..+|..+...+.+|.+.++.+..++++.+-.
T Consensus 539 ~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~ 586 (771)
T TIGR01069 539 KEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIR 586 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777888888888888888888888888888887766643
No 213
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=78.45 E-value=67 Score=31.06 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKA 76 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~ka 76 (393)
..|...|...+.+...++..++...++.+.++-+...+.....+++.++
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A 75 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA 75 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666555555554443
No 214
>KOG0244|consensus
Probab=78.41 E-value=1.4e+02 Score=34.72 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 230 THIHSLRSEVMRLRNQLANTQQEHTEKMERY 260 (393)
Q Consensus 230 ~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~ 260 (393)
.-+..|+.|+.+++.+-......+.+.-.+|
T Consensus 579 ~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekf 609 (913)
T KOG0244|consen 579 GIRAKLLQEIHIAKGQKVQLLRVMKEDAEKF 609 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4567888999999988888776665543333
No 215
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.35 E-value=50 Score=29.54 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~i 72 (393)
..+..+++....+..+++.+..++..++.+...++......
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777777777777777777777777777777766554444
No 216
>PRK11546 zraP zinc resistance protein; Provisional
Probab=78.05 E-value=13 Score=33.98 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 182 EALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTE 255 (393)
Q Consensus 182 E~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~ 255 (393)
+.|+++-..++..|+.+....+..|....+.+++. ..-|..|..||..|+.+|.+..-....
T Consensus 53 q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD------------~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPD------------SSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778889999998888888887653333222 245888889999999888765443333
No 217
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=77.40 E-value=31 Score=28.68 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLDQPVSDP-SSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEH 253 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Leq~vS~~-~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~ 253 (393)
|-+|++++.+=..=...|+..|..+.+.- .+|..+ +..+..+-..|..|-.||.+|..++..+....
T Consensus 17 V~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~l--p~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 17 VAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSL--PKKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666654444456777777653332 233322 23445567777777777777777777665443
No 218
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.26 E-value=52 Score=29.15 Aligned_cols=91 Identities=22% Similarity=0.307 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~E 106 (393)
+.++..++.+|+......| .-...|..+...|+...-.|++.. +.+.+++..|+....++-..++
T Consensus 11 ~~el~n~La~Le~slE~~K-------~S~~eL~kqkd~L~~~l~~L~~q~--------~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEK-------TSQGELAKQKDQLRNALQSLQAQN--------ASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp ---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------hhHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655544 444445555555665555554442 2344455555555555544443
Q ss_pred HHHHHhHH-HHHHHHHHHhHHHHHHHHhH
Q psy15959 107 QEEEFLTN-DLSRKLNQLTEEKYRLEQTI 134 (393)
Q Consensus 107 qEEE~LTN-~L~KKL~qL~~EKv~LE~~L 134 (393)
- +-+-. .|+.++.+-+..|.-||-.|
T Consensus 76 ~--eK~ak~~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 76 D--EKQAKLELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3 22332 45555555555555554443
No 219
>KOG0982|consensus
Probab=77.17 E-value=1.1e+02 Score=33.02 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQN--------------RVLKVELETYKLQLRALQEENKN 64 (393)
Q Consensus 27 ~e~~~~ri~sLqqen--------------r~lk~ele~~k~R~k~LqeEnr~ 64 (393)
+.+|..++.-|++.. -.+|+|-..+-.|+..|.+..|.
T Consensus 217 r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~re 268 (502)
T KOG0982|consen 217 RIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRRE 268 (502)
T ss_pred hhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666665543 34566777777777777776654
No 220
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=77.09 E-value=53 Score=29.14 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 116 LSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAET 156 (393)
Q Consensus 116 L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk 156 (393)
..+.|..|+.|....+..|+.+.++|- .|.+.+..+.++.
T Consensus 39 ~~~~l~lLq~e~~~~e~~le~d~~~L~-~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 39 NLHQLELLQEEIEKEEAALERDYEYLQ-ELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344556666777777777776666655 5555555554443
No 221
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=76.43 E-value=55 Score=29.03 Aligned_cols=61 Identities=31% Similarity=0.336 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 145 L~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
|.+....|++........++-|+.|.-..+.++|.+.++| ..|.+.+..+.++.+....++
T Consensus 25 ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L-~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 25 LLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYL-QELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Confidence 3333333333333334445666777777788888887774 456777777777777666663
No 222
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.37 E-value=90 Score=31.46 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHh
Q psy15959 112 LTNDLSRKLNQLTEEKYRLEQT 133 (393)
Q Consensus 112 LTN~L~KKL~qL~~EKv~LE~~ 133 (393)
|-..|.+.+..|+.++..|...
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~ 166 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKE 166 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544433
No 223
>PRK00106 hypothetical protein; Provisional
Probab=76.29 E-value=1.2e+02 Score=32.94 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q psy15959 232 IHSLRSEVMRL 242 (393)
Q Consensus 232 i~~Lr~Ev~~L 242 (393)
-.-.|+||+++
T Consensus 273 fdpvRReiAr~ 283 (535)
T PRK00106 273 FDPIRREIARM 283 (535)
T ss_pred CChHHHHHHHH
Confidence 34567888654
No 224
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=76.26 E-value=5.7 Score=30.91 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q psy15959 182 EALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPH 217 (393)
Q Consensus 182 E~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~ 217 (393)
+..+.||+|++++++.+...++.+|..+.=-...|.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~ 38 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPE 38 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCH
Confidence 345789999999999999999999987543334444
No 225
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.08 E-value=45 Score=28.16 Aligned_cols=56 Identities=27% Similarity=0.417 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQ 92 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~ 92 (393)
=|+..|+.|.++|..|..+....+.--..|.++|..||.....-+.+ .+.|+-||+
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer--------Lr~LLGkm~ 77 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER--------LQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhc
Confidence 36679999999999999999999999999999999999876665544 255555554
No 226
>KOG1103|consensus
Probab=74.94 E-value=1.2e+02 Score=32.31 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH---hHHHHHHHHhHHHHH---HHHHHHH
Q psy15959 98 KETLAHHYEQEEEFLTNDLSRKLNQL---TEEKYRLEQTIEQEQ---ERVVNKL 145 (393)
Q Consensus 98 Ke~L~~~~EqEEE~LTN~L~KKL~qL---~~EKv~LE~~LEqEQ---E~lVNkL 145 (393)
-++|...+|.|-|.|+..|.=.+.+. -.+|..|+.+|+.|- +.|+--|
T Consensus 137 GDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mL 190 (561)
T KOG1103|consen 137 GDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLML 190 (561)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777776665444443 346777888888775 4444433
No 227
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=74.78 E-value=52 Score=27.91 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=13.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 172 ELENTLEQEQEALVNKLWKRMDKLEAE 198 (393)
Q Consensus 172 eLEn~LEqEQE~LVNkLqKrmdkLe~E 198 (393)
.+...|..-.+.+.+++..+++.+...
T Consensus 115 ~~~~~l~~~~~~~~~~i~~~l~~~~~~ 141 (202)
T PF01442_consen 115 ELEESLESRSEELKEKIEERLEELSEE 141 (202)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555544443
No 228
>PF13514 AAA_27: AAA domain
Probab=74.65 E-value=1.7e+02 Score=33.75 Aligned_cols=65 Identities=29% Similarity=0.308 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 187 KLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTE 255 (393)
Q Consensus 187 kLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~ 255 (393)
++...+..+..+...+...|. |..+...+.. .+.+......|+.|..+...|...+...+.+...
T Consensus 307 ~~~~e~~~~~~~~~~~~~~lg-~~~~~~~~~~---~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~ 371 (1111)
T PF13514_consen 307 RLEAELAELEAELRALLAQLG-PDWDEEDLEA---LDPSLAARERIRELLQEREQLEQALAQARRELEE 371 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCcccchhhh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666665 3222222221 2223334456666666666666666655554444
No 229
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.53 E-value=71 Score=35.75 Aligned_cols=100 Identities=23% Similarity=0.232 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhH
Q psy15959 93 ALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE 172 (393)
Q Consensus 93 ~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVe 172 (393)
.+-.+-.+-|..+=.++.-=.|.|..+|++.+++-. ++.+ .+.+.+.+++..+..++.+++.|..+|..
T Consensus 498 Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e-------~~~~----~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 566 (782)
T PRK00409 498 GLPENIIEEAKKLIGEDKEKLNELIASLEELERELE-------QKAE----EAEALLKEAEKLKEELEEKKEKLQEEEDK 566 (782)
T ss_pred CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444555555554443322 1111 22333333444445566777888889999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 173 LENTLEQEQEALVNKLWKRMDKLEAEKRILQ 203 (393)
Q Consensus 173 LEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ 203 (393)
+...+.+|.+.++....++++.+-.+.+.++
T Consensus 567 ~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~ 597 (782)
T PRK00409 567 LLEEAEKEAQQAIKEAKKEADEIIKELRQLQ 597 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999888888877654
No 230
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=74.35 E-value=59 Score=38.60 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy15959 83 ISNTLMKKIQALKKEKETLA 102 (393)
Q Consensus 83 ItNtL~KKL~~LkkEKe~L~ 102 (393)
|++.|.-+|+.++++.+.|+
T Consensus 1064 Is~eLReQIq~~KQ~LesLQ 1083 (1439)
T PF12252_consen 1064 ISSELREQIQSVKQDLESLQ 1083 (1439)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 77777777887777766554
No 231
>KOG3251|consensus
Probab=74.07 E-value=44 Score=32.60 Aligned_cols=119 Identities=26% Similarity=0.425 Sum_probs=82.6
Q ss_pred hHHHHHHhHhHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCCCCCCCccchhHhHHHHHHHH
Q psy15959 162 NLEQLRREKVELENTLE-QEQEALVNKLWKRMDKLEAEKRILQIKLDQPV-SDPSSPHDMNNGDTASNLSTHIHSLRSEV 239 (393)
Q Consensus 162 ~L~qLrrEKVeLEn~LE-qEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~v-S~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev 239 (393)
.+++++..=.++|++.- +|--.++|-+++-++++..-..++ +-++ +-||+++. +..+. +.+|+..+
T Consensus 11 ~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl----~~~~~~epp~~rq------~~rlr--~dQl~~d~ 78 (213)
T KOG3251|consen 11 QLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRL----DVLVSKEPPKSRQ------AARLR--VDQLLEDV 78 (213)
T ss_pred HHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHH----HhHhhcCCCCcHH------HHHHH--HHHHHHHH
Confidence 35566677777777776 888899999999999998665443 4443 34555553 22333 77888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhh--cccchhhhhhhccHHHhhc
Q psy15959 240 MRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSE--SESSLEMEEERHYNEIAHS 313 (393)
Q Consensus 240 ~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lse--sesslE~~eer~fn~~~~~ 313 (393)
..|+.-|..+.+.++.||..+ + +|-+-|-+-+.. ..++..+|+|=.+|-.+..
T Consensus 79 ~~l~~~l~~~~~R~~~r~~~~-------------------~--er~~lL~~~~~~~~~~~~~~~D~el~~~d~l~~ 133 (213)
T KOG3251|consen 79 EHLQTSLRTSMNRNNRREQQA-------------------R--ERVELLDRRFTNGATGTSIPFDEELQENDSLKR 133 (213)
T ss_pred HHHHHHHHHHHHHhHHHHHHH-------------------H--HHHHHhcCCCCCCCccCCCcchHHHHhhhHHHH
Confidence 999998888888887764322 2 255556666766 6778888888888765544
No 232
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=74.05 E-value=1.2e+02 Score=31.97 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETY 51 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~ 51 (393)
-++.++..+.++++.++..++.+
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777788888888777776
No 233
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=73.96 E-value=80 Score=29.75 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15959 183 ALVNKLWKRMDKLEAEKRILQIKLDQPVSD 212 (393)
Q Consensus 183 ~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~ 212 (393)
.=+.+|+..+..+..+......+...-+++
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F~~~~aa 188 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEFQSVAAA 188 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345677777777777777666655544443
No 234
>PF14992 TMCO5: TMCO5 family
Probab=73.95 E-value=1.1e+02 Score=31.11 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--
Q psy15959 36 SLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLT-- 113 (393)
Q Consensus 36 sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LT-- 113 (393)
.|.+.|..+=..+..-..-+.+|..|+-...-. +.-+-++++|+..-..-++.|..++ .++|++-|.++
T Consensus 15 ~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~-----~~~~e~e~~~~~~~e~~l~~le~e~----~~LE~~ne~l~~~ 85 (280)
T PF14992_consen 15 RLDEANQSLLQKIQEKEGAIQSLEREITKMDHI-----ADRSEEEDIISEERETDLQELELET----AKLEKENEHLSKS 85 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----cCchhHHhhhhhchHHHHHHHHhhh----HHHhhhhHhhhhh
Confidence 455666666555544444555555554433221 1223556677655555666666555 44555556663
Q ss_pred -HHHHHHHH
Q psy15959 114 -NDLSRKLN 121 (393)
Q Consensus 114 -N~L~KKL~ 121 (393)
..|++|+.
T Consensus 86 ~~elq~k~~ 94 (280)
T PF14992_consen 86 VQELQRKQD 94 (280)
T ss_pred hhhhhhhhc
Confidence 46666653
No 235
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=73.73 E-value=22 Score=28.81 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENK 63 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr 63 (393)
|+|-.++..|+.+|..|+...+....--..|.+-|.
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888887777665444444444444333
No 236
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=73.34 E-value=12 Score=32.74 Aligned_cols=44 Identities=32% Similarity=0.452 Sum_probs=33.3
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHH
Q psy15959 226 SNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQR 280 (393)
Q Consensus 226 ~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~ 280 (393)
..+...|..|-.++..|+..+..+-.|.. +++-||-+|+++|..
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~-----------~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENT-----------ALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 45667777777888888887777665554 488999999999874
No 237
>KOG0964|consensus
Probab=73.15 E-value=2.1e+02 Score=34.08 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=22.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREE 270 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~ree 270 (393)
.+.+..+-.+...+++.+..++....+. ..||++++..
T Consensus 445 ~~r~~~~~~~~~~~k~~~del~~~Rk~l----WREE~~l~~~ 482 (1200)
T KOG0964|consen 445 KGRMEEFDAENTELKRELDELQDKRKEL----WREEKKLRSL 482 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3455566667777777777776555543 3455555443
No 238
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.12 E-value=47 Score=26.74 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 37 LQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 37 Lqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
|..++..|+-.++....++...+.+|+.|+..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~E 34 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRE 34 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666766777777777777777777754
No 239
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.82 E-value=2.1e+02 Score=34.09 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=28.8
Q ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 26 TREQLQK-RIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 26 ~~e~~~~-ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
.|+.++. ||..|.++...|..+++....++..|.+....|...
T Consensus 735 aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 735 ARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655 777777777777777777766666666666555543
No 240
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=72.54 E-value=99 Score=30.15 Aligned_cols=36 Identities=33% Similarity=0.347 Sum_probs=15.2
Q ss_pred HhHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHh
Q psy15959 123 LTEEKYRLEQTIEQEQE-RVVNKLMRKIEKLEAETDA 158 (393)
Q Consensus 123 L~~EKv~LE~~LEqEQE-~lVNkL~KkiekLeaEk~~ 158 (393)
+.+|...+-..-.+||+ .+..-...+++.|+.|...
T Consensus 259 ~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~ 295 (297)
T PF02841_consen 259 LLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQD 295 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333443 3333355666666555443
No 241
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.49 E-value=88 Score=29.54 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=14.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHH
Q psy15959 228 LSTHIHSLRSEVMRLRNQLANTQ 250 (393)
Q Consensus 228 l~~~i~~Lr~Ev~~Lr~~l~~~q 250 (393)
+...|..|..||..|..+|..-+
T Consensus 169 ~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666677777777665543
No 242
>KOG0999|consensus
Probab=71.56 E-value=1.8e+02 Score=32.71 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=60.4
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15959 22 PSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT--SVNIQAKAEQEEEFISNTLMKKIQALKKEKE 99 (393)
Q Consensus 22 ~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~--sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe 99 (393)
.|...-+-|..+|..|+.+...++.++...+.-...+...+..++.. ++.++. -.|.-.|..++---.
T Consensus 97 ESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR----------~rlr~elKe~KfRE~ 166 (772)
T KOG0999|consen 97 ESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQR----------RRLRDELKEYKFREA 166 (772)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH----------HHHHHHHHHHHHHHH
Confidence 34445556777999999999999988888887777777777666643 222221 133333333332222
Q ss_pred HHHHH-HHHHHHHhHHHHHHHHHHHhHHHHHHH
Q psy15959 100 TLAHH-YEQEEEFLTNDLSRKLNQLTEEKYRLE 131 (393)
Q Consensus 100 ~L~~~-~EqEEE~LTN~L~KKL~qL~~EKv~LE 131 (393)
.|... -|=|||.| .|+|.+.-|+.--|+.|
T Consensus 167 RllseYSELEEENI--sLQKqVs~LR~sQVEyE 197 (772)
T KOG0999|consen 167 RLLSEYSELEEENI--SLQKQVSNLRQSQVEYE 197 (772)
T ss_pred HHHHHHHHHHHhcc--hHHHHHHHHhhhhhhhh
Confidence 23333 35677766 47888888877666544
No 243
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.43 E-value=95 Score=29.47 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15959 87 LMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 87 L~KKL~~LkkEKe~L~~~~ 105 (393)
.+++++++..++..|...|
T Consensus 40 sQ~~id~~~~e~~~L~~e~ 58 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEY 58 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444
No 244
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=71.25 E-value=19 Score=30.10 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
..++.|..+|..||.....|-..++.++..+..|..||+.|.
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888776666666666666666666666553
No 245
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.24 E-value=11 Score=36.84 Aligned_cols=43 Identities=28% Similarity=0.456 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHH
Q psy15959 231 HIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQR 280 (393)
Q Consensus 231 ~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~ 280 (393)
+...|+.|+.+||.++..+.++.... ...++.||.||+..|..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~-------~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEIL-------TQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcC
Confidence 45567899999999988774444331 11267899999886654
No 246
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.12 E-value=90 Score=29.11 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 84 SNTLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 84 tNtL~KKL~~LkkEKe~L~~~~E 106 (393)
-..++.++..|+++...|...++
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888888888887776
No 247
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.04 E-value=1.5e+02 Score=31.54 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=11.9
Q ss_pred CCccchhHhHHHHHHHHHHHHH
Q psy15959 223 DTASNLSTHIHSLRSEVMRLRN 244 (393)
Q Consensus 223 dt~~~l~~~i~~Lr~Ev~~Lr~ 244 (393)
.+...+..++..++.++..|.+
T Consensus 322 ~s~e~l~~~~~~l~~eL~~l~~ 343 (563)
T TIGR00634 322 ASVEEVLEYAEKIKEELDQLDD 343 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 3445555566666665555443
No 248
>KOG4360|consensus
Probab=70.69 E-value=1.8e+02 Score=32.27 Aligned_cols=50 Identities=24% Similarity=0.432 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHhHHHHHHHHHHHHHH
Q psy15959 48 LETYKLQLRALQEENKNLRQTSVNIQA---KAEQEEEFISNTLMKKIQALKKE 97 (393)
Q Consensus 48 le~~k~R~k~LqeEnr~LR~~sv~iq~---kaEqEEEfItNtL~KKL~~LkkE 97 (393)
++.+.-+.+.+.++|-+||..+.-+.. .++.=|--+.|.+.|.+..++..
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q 213 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQ 213 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777766555443 34444445555666666555543
No 249
>KOG1265|consensus
Probab=70.41 E-value=1.1e+02 Score=35.92 Aligned_cols=68 Identities=29% Similarity=0.341 Sum_probs=44.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q psy15959 75 KAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVN 143 (393)
Q Consensus 75 kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVN 143 (393)
++|+|.+ .+.--..-|+..-++...|+.+..+.+|.|+..=..-|++|.+++..|..++++|-+.-++
T Consensus 1115 K~e~er~-~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~kal~~e~~~~~e~~~~ 1182 (1189)
T KOG1265|consen 1115 KAERERR-KRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEKALDAEAEQEYEEQMA 1182 (1189)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 5555543 2223334456666777788888888888888777777888887766666666665554443
No 250
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.36 E-value=33 Score=30.60 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 36 SLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 36 sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~E 106 (393)
.+..++..|+.++..++..++.|..+...|+..-- +..|...|.+|..+...|..+++
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-------------~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPT-------------NEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555667777777777765421 12345556666666666555553
No 251
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.00 E-value=17 Score=31.49 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=33.3
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHH
Q psy15959 226 SNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVE 283 (393)
Q Consensus 226 ~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~e 283 (393)
+.+..+|..|-.++..||.++..+-.|.+ .++-||-+|+.+|...-.
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~-----------~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENA-----------RLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhc
Confidence 34566677777777777777776665554 488899999988876543
No 252
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=69.90 E-value=1.6e+02 Score=31.44 Aligned_cols=189 Identities=17% Similarity=0.234 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEF 111 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~ 111 (393)
+|++..+.+...+..++...+.+...|+.+++.++...-.+-... -.....++.+.+...++....++.+.-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql--------~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL--------IETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 677788888777777777777777777777776665543332211 122334444555555544444332221
Q ss_pred h---HHHHHHHHHHHhHH--------HHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHH
Q psy15959 112 L---TNDLSRKLNQLTEE--------KYRL-----EQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELEN 175 (393)
Q Consensus 112 L---TN~L~KKL~qL~~E--------Kv~L-----E~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn 175 (393)
- --.|-+-|..+.+- ++.= ...+-.=.-+|++-+..+|+.|.+. + .+=.....
T Consensus 110 ~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~-------~----~~l~~~~~ 178 (420)
T COG4942 110 EREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKAT-------L----KQLAAVRA 178 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHH-------H----HHHHHHHH
Confidence 1 11233333333321 0000 0111111123333444444433322 2 23333444
Q ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHH
Q psy15959 176 TLEQEQEALVNKLW------KRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANT 249 (393)
Q Consensus 176 ~LEqEQE~LVNkLq------KrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~ 249 (393)
++++||+.+.+.+. .+++++..|+..+..+|++- -..-..++..|+..=.+|++.|...
T Consensus 179 ~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~---------------l~~~q~~l~eL~~~~~~L~~~Ias~ 243 (420)
T COG4942 179 EIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSE---------------LSADQKKLEELRANESRLKNEIASA 243 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56666666655443 45666667777777776631 1112345556666666666666666
Q ss_pred HHHHH
Q psy15959 250 QQEHT 254 (393)
Q Consensus 250 q~e~~ 254 (393)
..+..
T Consensus 244 e~~aA 248 (420)
T COG4942 244 EAAAA 248 (420)
T ss_pred HHHHH
Confidence 64444
No 253
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.84 E-value=88 Score=28.46 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15959 84 SNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQ 160 (393)
Q Consensus 84 tNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q 160 (393)
.+.|.....+|+.+-+.|..++..|-..+.+.+.--++.-+-+--+....++.....+-|++...|..|+++..+..
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888888888888887777777776666555444444455555666666777777777777777765433
No 254
>KOG0933|consensus
Probab=69.49 E-value=2.5e+02 Score=33.49 Aligned_cols=45 Identities=29% Similarity=0.351 Sum_probs=34.2
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH
Q psy15959 224 TASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVR 268 (393)
Q Consensus 224 t~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~r 268 (393)
+...+.+.|...+-.+.+++.+|...+-+....-..|+.+..++.
T Consensus 407 ~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld 451 (1174)
T KOG0933|consen 407 TLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELD 451 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHH
Confidence 345567788888888888888888888777777777877766553
No 255
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=69.19 E-value=15 Score=36.13 Aligned_cols=35 Identities=34% Similarity=0.455 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRA----LQEENKNLRQ 67 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~----LqeEnr~LR~ 67 (393)
....|.+||..||.++..++.+... |+.||..||.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777665555333332 5556666654
No 256
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=69.11 E-value=1.3e+02 Score=30.82 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 83 ISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 83 ItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
|.+-++-.+.+|......|....++ -+.-.|.|.+.|.++-.+|..+|..|=.=-=.|+|-...||..|
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~ener-L~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~l 199 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENER-LESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIREL 199 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455666677777766666555542 11223788889999999999888877666666777777776555
No 257
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.04 E-value=1.3e+02 Score=30.18 Aligned_cols=12 Identities=50% Similarity=0.581 Sum_probs=5.6
Q ss_pred HHHHhHHHHHHH
Q psy15959 120 LNQLTEEKYRLE 131 (393)
Q Consensus 120 L~qL~~EKv~LE 131 (393)
|.++..+|..|+
T Consensus 150 le~qk~dk~~Le 161 (265)
T COG3883 150 LEQQKEDKKSLE 161 (265)
T ss_pred HHHHHHHHHHHH
Confidence 344445554443
No 258
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.60 E-value=64 Score=32.40 Aligned_cols=85 Identities=29% Similarity=0.377 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 26 ~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~ 105 (393)
.|++++-+.+.++.++..|..+++.+.+....+++.++.|+.....+. |.| ..|.-+...|++--..|.-.+
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le------E~~--~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE------EML--KKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH--HhchhHHHHHHHHHHHhcccc
Confidence 467788889999999999999999999999999999999988766652 221 233334556777777777777
Q ss_pred HHHHHHhHHHHHH
Q psy15959 106 EQEEEFLTNDLSR 118 (393)
Q Consensus 106 EqEEE~LTN~L~K 118 (393)
|-=++|+--+|-+
T Consensus 208 El~e~~~i~dl~~ 220 (290)
T COG4026 208 ELPEEELISDLVK 220 (290)
T ss_pred cchHHHHHHHHHH
Confidence 7444444444444
No 259
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.53 E-value=1.6e+02 Score=30.98 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 139 ERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLE 196 (393)
Q Consensus 139 E~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe 196 (393)
+.++.--+..|..|..+.....++++=.-.|+ .++....+-..|-||.+|+
T Consensus 268 Nd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eR-------aRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 268 NDLTELHQNEIYNLKQELASMEEKMAYQSYER-------ARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHH
Confidence 33333334445555444444444333333333 3455555666778888888
No 260
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=68.23 E-value=5.1 Score=42.94 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhh
Q psy15959 278 LQREVERREALCRHLSESESSLEME 302 (393)
Q Consensus 278 l~~E~erreal~r~lsesesslE~~ 302 (393)
|.+|=..|-.|.++|-..+..|-..
T Consensus 379 LLkEEk~rk~i~k~lPkle~~L~~~ 403 (619)
T PF03999_consen 379 LLKEEKERKRIQKKLPKLEEELKKK 403 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555567778889998888876554
No 261
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.95 E-value=36 Score=30.35 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQ 251 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~ 251 (393)
++.|+.++..|..+...|...|....+. -|...|...|..|..|+..|..+|..++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~----------~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSE----------PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667778888888888888877653222 24566889999999999999999999886
No 262
>PRK14127 cell division protein GpsB; Provisional
Probab=67.21 E-value=10 Score=33.19 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q psy15959 86 TLMKKIQALKKE 97 (393)
Q Consensus 86 tL~KKL~~LkkE 97 (393)
.++|||..|.++
T Consensus 89 DiLKRls~LEk~ 100 (109)
T PRK14127 89 DILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHH
Confidence 578999888764
No 263
>PRK00846 hypothetical protein; Provisional
Probab=67.09 E-value=57 Score=27.13 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15959 183 ALVNKLWKRMDKLEAEKRILQIKLDQP 209 (393)
Q Consensus 183 ~LVNkLqKrmdkLe~EKr~LQ~~Leq~ 209 (393)
..|-+.|+.|++|....+.|-.+|...
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445666666666666666666543
No 264
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=66.69 E-value=1.1e+02 Score=28.24 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKA 76 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~ka 76 (393)
.-|..-|..++.....++..+.......+.|+.+...+.........++
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666655555544443
No 265
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=66.69 E-value=69 Score=26.08 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q psy15959 98 KETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQ 132 (393)
Q Consensus 98 Ke~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~ 132 (393)
-..|..-+++|.++|.+.=...|..+-.+|..+-.
T Consensus 17 ~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~ 51 (143)
T PF05130_consen 17 LQELLELLEEEREALISGDIDELEELVEEKQELLE 51 (143)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33455555555566655444445555555543333
No 266
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=66.57 E-value=2.8 Score=35.08 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQE 60 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~Lqe 60 (393)
.+++-.-++.|..+...|..+...++.++..|+.
T Consensus 20 ~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~ 53 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQRENAELKEEIEELQA 53 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444333333333333
No 267
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=66.07 E-value=87 Score=27.01 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
..|+++...|++-...+...+..+...+++.++.+|...
T Consensus 83 ~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~ 121 (158)
T PF03938_consen 83 QELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKA 121 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666777777777777777776543
No 268
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=65.86 E-value=1.3e+02 Score=28.73 Aligned_cols=152 Identities=23% Similarity=0.364 Sum_probs=75.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHhHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 82 FISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLS---RKLNQLTEEKYRLE--QTIEQEQERVVNKLMRKIEKLEAET 156 (393)
Q Consensus 82 fItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~---KKL~qL~~EKv~LE--~~LEqEQE~lVNkL~KkiekLeaEk 156 (393)
-|.+.+......+..++..|+..|..-..-|-..|. +.+..|+.+-.+|. ..+...|+.=+..|.+.+...+++.
T Consensus 22 ~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~ 101 (206)
T PF14988_consen 22 KLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEH 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666552222222111 11222222222222 1233344555556666666666655
Q ss_pred -HhhhhhHHHHHHhHhHHHHhH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHH
Q psy15959 157 -DAKQNNLEQLRREKVELENTL-EQEQEALVNKLWKRMDKL-EAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIH 233 (393)
Q Consensus 157 -~~~q~~L~qLrrEKVeLEn~L-EqEQE~LVNkLqKrmdkL-e~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~ 233 (393)
..++.--.++-.||..||..+ |...- -|.++..+- ..-... |+. .....+..|..
T Consensus 102 ~~~l~~~~~qfl~EK~~LEke~~e~~i~----~l~e~a~~el~~k~~a----le~--------------~A~~~l~e~~~ 159 (206)
T PF14988_consen 102 AEKLQEAESQFLQEKARLEKEASELKIL----QLGERAHKELKKKAQA----LEL--------------AAKKSLDEFTR 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH----HhHHHhhHHHHHHHHH----HHH--------------HHHHHHHHHHH
Confidence 233344455666777776644 32221 122222111 000001 110 01234567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15959 234 SLRSEVMRLRNQLANTQQEHTE 255 (393)
Q Consensus 234 ~Lr~Ev~~Lr~~l~~~q~e~~~ 255 (393)
.+..|+.+|+..|...-++...
T Consensus 160 ~i~~EN~~L~k~L~~l~~e~~~ 181 (206)
T PF14988_consen 160 SIKRENQQLRKELLQLIQEAQK 181 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888776544
No 269
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.82 E-value=1.2e+02 Score=28.69 Aligned_cols=52 Identities=25% Similarity=0.375 Sum_probs=28.2
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELE 174 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLE 174 (393)
..+++++++..++.+|...++ .|.++++.|+.....++..++.++.+-.+|+
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~--------~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYR--------QLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777666665 4444444444444444444444444444433
No 270
>PF14282 FlxA: FlxA-like protein
Probab=65.76 E-value=31 Score=29.38 Aligned_cols=48 Identities=33% Similarity=0.407 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKV----ELETYKLQLRALQEENKNLRQTSVNIQA 74 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~----ele~~k~R~k~LqeEnr~LR~~sv~iq~ 74 (393)
-+.|..+|..|+++...|.. -.++-..++..|+.++..|......++.
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888887775 2345577777888887777766555444
No 271
>KOG0982|consensus
Probab=65.33 E-value=2.1e+02 Score=31.12 Aligned_cols=151 Identities=22% Similarity=0.259 Sum_probs=78.5
Q ss_pred HHHHHHHHHhHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHhHhHHHHhHHHHHHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQ----------TIEQEQERVVNKLMRKIEKLEAET-DAKQNNLEQLRREKVELENTLEQEQEA 183 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~----------~LEqEQE~lVNkL~KkiekLeaEk-~~~q~~L~qLrrEKVeLEn~LEqEQE~ 183 (393)
++-.|+.-|.+.-.+|++ .+.+|--.||.+-.- ++.+..+. ..-.+-|.--.+---++...+|.|-..
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~-LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasl 297 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHM-LEEQRREQELRAEESLSEEERRHREILIKKEREASL 297 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554 555665566653321 11111111 011112222222334667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Q psy15959 184 LVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEH---TEKMERY 260 (393)
Q Consensus 184 LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~---~~k~~~~ 260 (393)
-+-.|+-++.+|+.|.-.|.....- . ..-++.|...-+++-..+.-|+-+|...|+.+ ..+..+|
T Consensus 298 e~Enlqmr~qqleeentelRs~~ar----l--------ksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrf 365 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIAR----L--------KSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRF 365 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----H--------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889988888887776644321 0 11223344444555556666777777766544 3445556
Q ss_pred HHHHhHHHHHhHHHHHHH
Q psy15959 261 VKDEKNVREENLRLQRKL 278 (393)
Q Consensus 261 ~~ee~~~reeN~rl~~kl 278 (393)
..+-.++-|==..|++-|
T Consensus 366 q~ekeatqELieelrkel 383 (502)
T KOG0982|consen 366 QEEKEATQELIEELRKEL 383 (502)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 555555444333444433
No 272
>KOG0579|consensus
Probab=65.21 E-value=2.7e+02 Score=32.36 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=27.8
Q ss_pred HhHHHHhHHHHHhHHHHHHHHHH--HHHHHHHHHhhhh
Q psy15959 259 RYVKDEKNVREENLRLQRKLQRE--VERREALCRHLSE 294 (393)
Q Consensus 259 ~~~~ee~~~reeN~rl~~kl~~E--~erreal~r~lse 294 (393)
-|..|+++++|.-.-+++.|..+ +-|-.-|.||--+
T Consensus 973 iWElEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE 1010 (1187)
T KOG0579|consen 973 IWELEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKE 1010 (1187)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999998877777777666 7888888888543
No 273
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=64.99 E-value=1.5e+02 Score=29.38 Aligned_cols=93 Identities=14% Similarity=0.245 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENKNLR----QTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQE 108 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR----~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqE 108 (393)
.++.|..+|.-+=..+.....+-+....+.+.++ ..+.....+.++.--=....|.++|+.++.+ ++...+..|
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~e 121 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQNE 121 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHH
Confidence 5666777776444445555444444444444443 4445555555555555556666677666543 444444443
Q ss_pred HHHhHHHHHHHHHHHhHHH
Q psy15959 109 EEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 109 EE~LTN~L~KKL~qL~~EK 127 (393)
---+.+.+.+.++.+++..
T Consensus 122 i~k~r~e~~~ml~evK~~~ 140 (230)
T PF03904_consen 122 IKKVREENKSMLQEVKQSH 140 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 274
>PLN02939 transferase, transferring glycosyl groups
Probab=64.90 E-value=2.9e+02 Score=32.54 Aligned_cols=17 Identities=35% Similarity=0.257 Sum_probs=9.8
Q ss_pred cccCccccCCCCcCCHHHHHH
Q psy15959 12 SMDGVALMMPPSPVTREQLQK 32 (393)
Q Consensus 12 s~~g~~~~~p~s~~~~e~~~~ 32 (393)
+.||.. .|.+-.|++--
T Consensus 119 ~~~~~~----~~~~~~~~~~~ 135 (977)
T PLN02939 119 SKDGEQ----LSDFQLEDLVG 135 (977)
T ss_pred cccccc----cccccHHHHHH
Confidence 344555 47777776643
No 275
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=64.65 E-value=1.7e+02 Score=29.99 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYKL 53 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k~ 53 (393)
++..++...+..++.+...++..++.+.+
T Consensus 90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 90 YDNGNEENQKQLLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665555544444433
No 276
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=64.54 E-value=1.6e+02 Score=29.53 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=16.5
Q ss_pred hHHHHHHhHhHHHHhHHHHHHHHHHHHHH
Q psy15959 162 NLEQLRREKVELENTLEQEQEALVNKLWK 190 (393)
Q Consensus 162 ~L~qLrrEKVeLEn~LEqEQE~LVNkLqK 190 (393)
++..++++...++..|..|...+++.+.+
T Consensus 283 ~v~~l~~~i~~l~~~l~~e~~~~~~~~~~ 311 (444)
T TIGR03017 283 QYKRAQAEINSLKSQLNAEIKKVTSSVGT 311 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655555554443
No 277
>KOG0245|consensus
Probab=64.28 E-value=18 Score=42.27 Aligned_cols=99 Identities=28% Similarity=0.267 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCCCCccc--------------------hhHhHHHHHHHHHHHHHHHHHH----------------HHHHH
Q psy15959 211 SDPSSPHDMNNGDTASN--------------------LSTHIHSLRSEVMRLRNQLANT----------------QQEHT 254 (393)
Q Consensus 211 S~~~SP~~~~~~dt~~~--------------------l~~~i~~Lr~Ev~~Lr~~l~~~----------------q~e~~ 254 (393)
.++.||.|||-..|-++ =..-|+.||.||.+||..|... +.+..
T Consensus 322 IAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e 401 (1221)
T KOG0245|consen 322 IAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIE 401 (1221)
T ss_pred hhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccHH
Confidence 45779999874333211 1457999999999999988753 45577
Q ss_pred HHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhccHH
Q psy15959 255 EKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEMEEERHYNE 309 (393)
Q Consensus 255 ~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsesesslE~~eer~fn~ 309 (393)
+-+.+..+-|+.+.+=|---..||...-.+|-.=-+.|.+..-...+|-+....+
T Consensus 402 ~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emGva~~~D~~kk~ph 456 (1221)
T KOG0245|consen 402 ELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMGVAVREDGGKKTPH 456 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCceeeecCCccCcc
Confidence 7788888999999999999999998876666555555888888887777655433
No 278
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=63.78 E-value=1.3e+02 Score=28.39 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy15959 86 TLMKKIQALKKEKET 100 (393)
Q Consensus 86 tL~KKL~~LkkEKe~ 100 (393)
.|.+||+.|..+.+.
T Consensus 40 ~l~rri~~lE~~le~ 54 (237)
T PF00261_consen 40 SLQRRIQLLEEELER 54 (237)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 455555555444333
No 279
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=62.69 E-value=1.2e+02 Score=30.62 Aligned_cols=65 Identities=25% Similarity=0.317 Sum_probs=38.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 128 YRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQN-------NLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200 (393)
Q Consensus 128 v~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~-------~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr 200 (393)
.+|-.++..=++.-|.-+..++++|+-+++.+|- -.+.+-.||- .|+++...|+.+.+
T Consensus 174 ~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~s---------------eLq~r~~~l~~~L~ 238 (289)
T COG4985 174 ETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKS---------------ELQKRLAQLQTELD 238 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 3444444444556666677777777777666552 2333333443 45667777777777
Q ss_pred HHHHhhc
Q psy15959 201 ILQIKLD 207 (393)
Q Consensus 201 ~LQ~~Le 207 (393)
.|+..++
T Consensus 239 ~L~~e~~ 245 (289)
T COG4985 239 ALRAELE 245 (289)
T ss_pred HHhhhhh
Confidence 7776664
No 280
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=62.59 E-value=54 Score=30.82 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 39 QQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 39 qenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
.+|..|+.++..++.+++.|+.+|..|..
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 281
>KOG1962|consensus
Probab=62.59 E-value=1.6e+02 Score=28.83 Aligned_cols=64 Identities=27% Similarity=0.391 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15959 134 IEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQP 209 (393)
Q Consensus 134 LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~ 209 (393)
|+.|--.+++++.+ |+++...++.+|+.+...+..|..+. ..+++..|.|-+|-..||.+++.+
T Consensus 149 ~~~~~~~~~~~~~k----L~~el~~~~~~Le~~~~~~~al~Kq~--------e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 149 LEEENDKLKADLEK----LETELEKKQKKLEKAQKKVDALKKQS--------EGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred hhhhHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHcccHHHHHHHHHHHHHHHHhcc
Confidence 44444444444433 44555556666666666666665543 345667777777777888887754
No 282
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=62.50 E-value=1.9e+02 Score=29.60 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=38.1
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 118 RKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETD--AKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKL 195 (393)
Q Consensus 118 KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~--~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkL 195 (393)
.+|...+..-..+..+|.+-....++....++..+..... +-...|.+.+..=..|.+ .|...+...+...
T Consensus 305 ~~l~~~~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~-------rL~~a~~~~L~~~ 377 (438)
T PRK00286 305 RLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQ-------RLRRAMRRQLKRK 377 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544433221 111222222222222222 3334445555555
Q ss_pred HHHHHHHHHhhcC
Q psy15959 196 EAEKRILQIKLDQ 208 (393)
Q Consensus 196 e~EKr~LQ~~Leq 208 (393)
......+..+|..
T Consensus 378 ~~rL~~l~~rL~~ 390 (438)
T PRK00286 378 RQRLEALAQQLEA 390 (438)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666664
No 283
>KOG4403|consensus
Probab=62.48 E-value=2.4e+02 Score=30.85 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q psy15959 189 WKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 189 qKrmdkLe~EKr~LQ~~Leq 208 (393)
.|.++.|+.+.+.-+..|+.
T Consensus 308 rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 308 RKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 36778888888887888875
No 284
>smart00340 HALZ homeobox associated leucin zipper.
Probab=62.25 E-value=15 Score=28.05 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYK 52 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k 52 (393)
|+-|-|+.-+++|-++|+.|+.|+..++
T Consensus 5 vdCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 5 VDCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788889999999999998875554
No 285
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.42 E-value=1.7e+02 Score=28.86 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q psy15959 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVN 143 (393)
Q Consensus 87 L~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVN 143 (393)
+..-+..|+.+...+..++..-..+.++. .=.+..++.+...|..++.+|...++.
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~~l~~~~~~~-~P~v~~l~~~i~~l~~~i~~e~~~i~~ 267 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLAQLRSITPEQ-NPQVPSLQARIKSLRKQIDEQRNQLSG 267 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445556655555555554322222221 223455555566666666666655543
No 286
>KOG4196|consensus
Probab=61.38 E-value=60 Score=29.81 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=15.4
Q ss_pred ccchhHhHHHH-HHHHHHHHHHHH
Q psy15959 225 ASNLSTHIHSL-RSEVMRLRNQLA 247 (393)
Q Consensus 225 ~~~l~~~i~~L-r~Ev~~Lr~~l~ 247 (393)
.-.|..|+..| |.||.+||++..
T Consensus 34 VReLNr~LrG~~reEVvrlKQrRR 57 (135)
T KOG4196|consen 34 VRELNRHLRGLSREEVVRLKQRRR 57 (135)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34466666655 678999987544
No 287
>PRK11519 tyrosine kinase; Provisional
Probab=61.26 E-value=2.6e+02 Score=30.79 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=10.5
Q ss_pred cccccCCCCCCCCCCCCC
Q psy15959 314 MRLVGSSPSSSRPLSPGA 331 (393)
Q Consensus 314 ~r~~~~~~~~~~~~~p~~ 331 (393)
.|-|+....+..|++|..
T Consensus 407 ~rIid~A~~P~~P~~P~~ 424 (719)
T PRK11519 407 VRIVDPAITQPGVLKPKK 424 (719)
T ss_pred eEEEecCCCCCCCCCCcH
Confidence 455554444567777754
No 288
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=61.24 E-value=1.6e+02 Score=28.43 Aligned_cols=27 Identities=33% Similarity=0.246 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKL 53 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~ 53 (393)
|+++...+..|++++..|+.++.....
T Consensus 39 ye~~l~e~~~l~~~i~~L~~~l~~~~~ 65 (212)
T COG3599 39 YEQLLDENEDLEDEIDELKEELKEAAD 65 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444555555555544444443
No 289
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=60.64 E-value=28 Score=33.15 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLR---ALQEENKNLRQT 68 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k---~LqeEnr~LR~~ 68 (393)
....+.+||+.|+.+++.++.+.. .+++||..||..
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666655555544444 666777777653
No 290
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=60.07 E-value=53 Score=33.82 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy15959 87 LMKKIQALKKEKETL 101 (393)
Q Consensus 87 L~KKL~~LkkEKe~L 101 (393)
|.++++.|..+...+
T Consensus 332 l~~~~~~l~~~~~~~ 346 (451)
T PF03961_consen 332 LKEKLEELEEELEEL 346 (451)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 291
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=60.07 E-value=1.6e+02 Score=27.87 Aligned_cols=88 Identities=26% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVL----KVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAH 103 (393)
Q Consensus 28 e~~~~ri~sLqqenr~l----k~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~ 103 (393)
++-.+|+..++++..++ |.+++.++.+++...-+++-|.+. ..+.|+|-.-.-+++ +..++||..|+.
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~----cqKKEkEykealea~----nEknkeK~~Lv~ 133 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQS----CQKKEKEYKEALEAF----NEKNKEKAQLVT 133 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_pred HHHHHHHHhH---HHHHHHHHHHhHH
Q psy15959 104 HYEQEEEFLT---NDLSRKLNQLTEE 126 (393)
Q Consensus 104 ~~EqEEE~LT---N~L~KKL~qL~~E 126 (393)
++ -|.++ ..=+|||.+|.+.
T Consensus 134 ~L---~eLv~eSE~~rmKKLEELsk~ 156 (159)
T PF04949_consen 134 RL---MELVSESERLRMKKLEELSKE 156 (159)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhh
No 292
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=60.04 E-value=33 Score=30.46 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
|-+++.||..|+-+++.++.--..+..||+-|+-.++..|..
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554455555555555555555444
No 293
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.98 E-value=50 Score=27.75 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 30 LQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 30 ~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
|..+|..--...--|.+|++.+|-++.+|++|...++.
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~ 46 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 33333333333334444555555555555544444433
No 294
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=59.44 E-value=28 Score=33.15 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHH
Q psy15959 230 THIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKL 278 (393)
Q Consensus 230 ~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl 278 (393)
.+...|+.|+.+|++++..++.+... ...+++||.+|+.-|
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~--------~~~l~~en~~L~~lL 109 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQE--------LEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence 34555666666666666555444332 235556666666544
No 295
>PLN02372 violaxanthin de-epoxidase
Probab=59.23 E-value=1.7e+02 Score=31.51 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=24.9
Q ss_pred hhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 159 KQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAE 198 (393)
Q Consensus 159 ~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~E 198 (393)
+.+.+..|...-+.....|-.|+-.+.++|.+...+.+..
T Consensus 408 ~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~~~~~vek~ 447 (455)
T PLN02372 408 LEEGLKELEQDEENFLKELSKEEKELLEKLKMEASEVEKL 447 (455)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555567777777777777777766643
No 296
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.16 E-value=1.8e+02 Score=30.45 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 30 LQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 30 ~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
.-.++..|+.+.+.++.+++.+..++++++...+-|..
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477777777777777777777777777776655543
No 297
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=59.06 E-value=1.4e+02 Score=26.92 Aligned_cols=157 Identities=24% Similarity=0.324 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy15959 41 NRVLKVELETYKLQLRALQEENKNLRQTSVNIQA------KAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTN 114 (393)
Q Consensus 41 nr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~------kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN 114 (393)
...+|...-+++.++..++...+........++. +.|. .+|.+||+.=+.|...|-..+-. .=.+.+
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien------~~l~~kIeERn~eL~~Lk~~~~~-~v~~L~ 80 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIEN------QQLNEKIEERNKELLKLKKKIGK-TVQILT 80 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3344444455555555555555555544333321 2221 46777777766666666555432 112334
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHH-----HhHHHHHHHHHHHHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELE-----NTLEQEQEALVNKLW 189 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLE-----n~LEqEQE~LVNkLq 189 (393)
....|+.-+..+...+...|..= +..++++...+..+..+...+......|+..-..+. .-.+ ....-|..|+
T Consensus 81 h~keKl~~~~~~~~~l~~~l~~~-~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~-~~~~~~~~l~ 158 (177)
T PF13870_consen 81 HVKEKLHFLSEELERLKQELKDR-EEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYD-KTKEEVEELR 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH-HHHHHHHHHH
Confidence 45566666666666666665532 233335566555555554444444444443222111 0011 1222244456
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy15959 190 KRMDKLEAEKRILQIKL 206 (393)
Q Consensus 190 KrmdkLe~EKr~LQ~~L 206 (393)
+.+..|+..-..++.++
T Consensus 159 ~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 159 KEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66666666555555444
No 298
>KOG4809|consensus
Probab=59.01 E-value=3e+02 Score=30.84 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
.+.-|......++..+++-+.++.+=++-++.|=..
T Consensus 244 e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEm 279 (654)
T KOG4809|consen 244 EQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEM 279 (654)
T ss_pred HHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 333344444444555666666666666666555443
No 299
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=58.83 E-value=1.5e+02 Score=27.82 Aligned_cols=85 Identities=27% Similarity=0.424 Sum_probs=52.1
Q ss_pred cccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q psy15959 12 SMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKI 91 (393)
Q Consensus 12 s~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL 91 (393)
..||..|-+|--++|.|.=+.=++.+...-..-|.. +|.+|.. .+++|
T Consensus 92 ~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~--------------iRniRr~------------------~~~~i 139 (185)
T PRK00083 92 SNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVA--------------IRNIRRD------------------ANDKL 139 (185)
T ss_pred ccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH------------------HHHHH
Confidence 568999999988998765433333333332222221 2333332 33444
Q ss_pred HHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q psy15959 92 QALKKEK---ETLAHHYEQEEEFLTNDLSRKLNQLTEEKY 128 (393)
Q Consensus 92 ~~LkkEK---e~L~~~~EqEEE~LTN~L~KKL~qL~~EKv 128 (393)
..+.+++ +|...+++.|=+-||+.-.++++++-+.|.
T Consensus 140 Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~~~Ke 179 (185)
T PRK00083 140 KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELLAAKE 179 (185)
T ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 777888888888888888888888877773
No 300
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=58.73 E-value=2.9e+02 Score=30.49 Aligned_cols=18 Identities=17% Similarity=0.578 Sum_probs=10.3
Q ss_pred cccccCCCCCCCCCCCCC
Q psy15959 314 MRLVGSSPSSSRPLSPGA 331 (393)
Q Consensus 314 ~r~~~~~~~~~~~~~p~~ 331 (393)
.|-|+....+..|.+|..
T Consensus 407 ~rIid~A~~p~~P~~P~~ 424 (726)
T PRK09841 407 VRIIDPAVTQPQPVKPKK 424 (726)
T ss_pred eeeccCCCCCCCCCCchH
Confidence 466655445566777643
No 301
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=58.52 E-value=1.6e+02 Score=27.43 Aligned_cols=86 Identities=22% Similarity=0.366 Sum_probs=51.5
Q ss_pred ccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 11 NSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKK 90 (393)
Q Consensus 11 ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KK 90 (393)
...||..|-+|--++|.|.=+.=++.+......-|. -+|.+|.. -+++
T Consensus 82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv--------------~iRniRr~------------------~~~~ 129 (176)
T TIGR00496 82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKV--------------AVRNVRRD------------------ANDK 129 (176)
T ss_pred cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHHH
Confidence 368999999998889876543333333333222222 12333333 2333
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q psy15959 91 IQALKKEK---ETLAHHYEQEEEFLTNDLSRKLNQLTEEKY 128 (393)
Q Consensus 91 L~~LkkEK---e~L~~~~EqEEE~LTN~L~KKL~qL~~EKv 128 (393)
|..+.+.+ +|...+++.+=+-||+.-.++++.+-+.|.
T Consensus 130 iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~~~Ke 170 (176)
T TIGR00496 130 VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEILKDKE 170 (176)
T ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443332 677788888888888888888888877763
No 302
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=58.32 E-value=1e+02 Score=25.19 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 179 QEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 179 qEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
.|||..+++|.|.==.|.=....|+.+|.+
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~ 32 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQK 32 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 466777777777777777777778888874
No 303
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=57.74 E-value=2.2e+02 Score=28.96 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=26.3
Q ss_pred hhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 160 QNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200 (393)
Q Consensus 160 q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr 200 (393)
|..|.-+....+++-+....|+..+++.|.. |..-..+--
T Consensus 161 q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~~-~~g~~~ef~ 200 (301)
T PF06120_consen 161 QATLNDLTEQRIDLIRQKAAEQAGAYNSLKG-MNGAHAEFN 200 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence 3445556677777777777889999998866 433333333
No 304
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=57.29 E-value=3.5e+02 Score=31.08 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q psy15959 57 ALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEE 126 (393)
Q Consensus 57 ~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~E 126 (393)
.|+.+...||+.-.+.. +....-..-.|..+|++|++|-..=-- +-...-.|..||.-|+.|
T Consensus 433 ~Le~elekLk~eilKAk---~s~~~~~~~~L~e~IeKLk~E~d~e~S-----~A~~~~gLk~kL~~Lr~E 494 (762)
T PLN03229 433 ELEGEVEKLKEQILKAK---ESSSKPSELALNEMIEKLKKEIDLEYT-----EAVIAMGLQERLENLREE 494 (762)
T ss_pred cHHHHHHHHHHHHHhcc---cccCCCCChHHHHHHHHHHHHHHHHHH-----HhhhhhhHHHHHHHHHHH
Confidence 45666666665522221 222333344566777777775432100 112223566666666644
No 305
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=57.17 E-value=2.6e+02 Score=29.64 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15959 44 LKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQL 123 (393)
Q Consensus 44 lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL 123 (393)
|..+.+.+-.++..||.-+..||..-+.=.++.-- - -..++.+.|..+.++...+...+..|.--.+....+.|+.+
T Consensus 211 L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~--~-qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V 287 (424)
T PF03915_consen 211 LSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSP--K-QLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKV 287 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCH--H-HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34444555566666666666666554433332110 0 12455666666666666666666666666666666666666
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 124 TEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 124 ~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
-+|...| ..||.++.+|...++++
T Consensus 288 ~eEQqfL-----~~QedL~~DL~eDl~k~ 311 (424)
T PF03915_consen 288 CEEQQFL-----KLQEDLLSDLKEDLKKA 311 (424)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 5554433 23355555555555443
No 306
>PRK04325 hypothetical protein; Provisional
Probab=57.11 E-value=1e+02 Score=24.96 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
....|-+-|++|+.|....+.|-.+|..
T Consensus 28 LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 28 LNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677888888888777777754
No 307
>KOG0995|consensus
Probab=57.09 E-value=3.2e+02 Score=30.49 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=17.6
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHH
Q psy15959 262 KDEKNVREENLRLQRKLQREVERRE 286 (393)
Q Consensus 262 ~ee~~~reeN~rl~~kl~~E~erre 286 (393)
.....+|+++-++..+-..|+|-++
T Consensus 474 ~~~~~~k~e~eee~~k~~~E~e~le 498 (581)
T KOG0995|consen 474 SKYELKKEEAEEEWKKCRKEIEKLE 498 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888777777665
No 308
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.93 E-value=41 Score=25.19 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 37 LQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 37 Lqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~i 72 (393)
|...-.+||..-+.++....+|..||..|+.....+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555566666666666666666554444
No 309
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=56.88 E-value=1e+02 Score=24.69 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHh
Q psy15959 92 QALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKV 171 (393)
Q Consensus 92 ~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKV 171 (393)
..|..-...+..+++.-.+.|+.....=+..|...+..|-..|+.+.+.....|..+++.++. .+.++..--.
T Consensus 24 ~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~-------~l~~l~~~~~ 96 (127)
T smart00502 24 KQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ-------KQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 444444455555666666666666666667777777777777777777777777777666644 3444444444
Q ss_pred HHHHhHH
Q psy15959 172 ELENTLE 178 (393)
Q Consensus 172 eLEn~LE 178 (393)
..+..|.
T Consensus 97 ~~e~~l~ 103 (127)
T smart00502 97 FTEEALN 103 (127)
T ss_pred HHHHHHH
Confidence 4444444
No 310
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=56.86 E-value=1.4e+02 Score=27.70 Aligned_cols=86 Identities=24% Similarity=0.364 Sum_probs=52.7
Q ss_pred ccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 11 NSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKK 90 (393)
Q Consensus 11 ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KK 90 (393)
...||..|-+|.-++|.|.=+.=++.+...-..-|. . +|.+|. ..+++
T Consensus 87 P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv-------~-------iRniR~------------------~~~~~ 134 (179)
T cd00520 87 PNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKV-------A-------IRNIRR------------------DANDK 134 (179)
T ss_pred cCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHH------------------HHHHH
Confidence 367898999998899876543333333332222221 1 233332 23344
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q psy15959 91 IQALKKE---KETLAHHYEQEEEFLTNDLSRKLNQLTEEKY 128 (393)
Q Consensus 91 L~~LkkE---Ke~L~~~~EqEEE~LTN~L~KKL~qL~~EKv 128 (393)
|..+.+. .+|-..+++.+=+-||+.-.++++.+-+.|.
T Consensus 135 lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~~~Ke 175 (179)
T cd00520 135 IKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKE 175 (179)
T ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445443 5677888888888888888888888877763
No 311
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=56.64 E-value=46 Score=35.79 Aligned_cols=13 Identities=8% Similarity=-0.089 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy15959 180 EQEALVNKLWKRM 192 (393)
Q Consensus 180 EQE~LVNkLqKrm 192 (393)
++|.-+..|..|+
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444455555
No 312
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=56.61 E-value=1.2e+02 Score=25.45 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYV 261 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~ 261 (393)
+....+|+.|..........+...++.+.++.+ -.+...+|..|...+...+..+...+.+....-..|+
T Consensus 30 ~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~------l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~ 99 (141)
T TIGR02473 30 ERLETQLQQLIKYREEYEQQALEKVGAGTSALE------LSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLL 99 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665555432222222221 1234567777777777777777777666655544444
No 313
>smart00338 BRLZ basic region leucin zipper.
Probab=56.43 E-value=41 Score=25.69 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy15959 55 LRALQEENKNL 65 (393)
Q Consensus 55 ~k~LqeEnr~L 65 (393)
+..|..+|..|
T Consensus 35 ~~~L~~en~~L 45 (65)
T smart00338 35 VEQLEAENERL 45 (65)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 314
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=56.29 E-value=1.7e+02 Score=27.03 Aligned_cols=55 Identities=29% Similarity=0.477 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Q psy15959 86 TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERV 141 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~l 141 (393)
.|..+|+.|++.|-..-..+ .|...+-.+|++.|+.|.-||+.|+..|-.=|+-+
T Consensus 10 ~LInrInelQQaKKk~~EEL-gEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l 64 (134)
T PF15233_consen 10 DLINRINELQQAKKKSSEEL-GEAQALWEALQRELDSLNGEKVHLEEILNKKQETL 64 (134)
T ss_pred HHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34555666666443332222 34455667778888888888888777776655543
No 315
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=55.55 E-value=1.9e+02 Score=27.35 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHH--------HHHHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLE--------QEQEALV 185 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LE--------qEQE~LV 185 (393)
+.|..+|.+....-.++..+|-.....++ .+....+.+... +...+...-++.+.|. .--+...
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~-~~~~~p~~aq~~-------l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~ 152 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLI-EIQTRPERAQQQ-------LSEARQRLQEIRNQLQNLPPNGESPLSEAQR 152 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHH-------HHHHHHHHHHHHHHHhccCCCCcchhhHHHH
Confidence 34555555555555555555554444443 333333333332 2333333333333332 2345566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Le 207 (393)
+.|+-+..-|..+...++..|.
T Consensus 153 ~~l~ae~~~l~~~~~~le~el~ 174 (240)
T PF12795_consen 153 WLLQAELAALEAQIEMLEQELL 174 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777665
No 316
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=55.47 E-value=79 Score=25.00 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQ 203 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ 203 (393)
|...+.+|++++..|....+.+.
T Consensus 30 Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 30 QQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555556666655555554
No 317
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=55.37 E-value=61 Score=26.35 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
+.|+.+|+.|...|+.|-.-++..+.+...|--...+--..++.++.+
T Consensus 1 erL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrla 48 (67)
T PF10506_consen 1 ERLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLA 48 (67)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 468899999999999999999999999999988888877766666544
No 318
>KOG0243|consensus
Probab=55.30 E-value=4.3e+02 Score=31.46 Aligned_cols=91 Identities=16% Similarity=0.298 Sum_probs=42.6
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHH
Q psy15959 107 QEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVN 186 (393)
Q Consensus 107 qEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVN 186 (393)
.+++|++..+.+--..+.+--+.|-+.++.=+.. +..|+.+|+.+...-...++ ....+-.+.-..++
T Consensus 514 ~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d-~s~l~~kld~~~~~~d~n~~-----------~~~~~~~~l~~~~~ 581 (1041)
T KOG0243|consen 514 KEEEEIISQQEKSEEKLVDRATKLRRSLEESQDD-LSSLFEKLDRKDRLDDDNQE-----------VIDDFQSQLSENLS 581 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhccccccHH-----------HHHHHhhhhhHHHH
Confidence 4566666555554444444455555555544433 34566666555432222222 22223333344566
Q ss_pred HHHHHHHHHHHHH-HHHHHhhcCC
Q psy15959 187 KLWKRMDKLEAEK-RILQIKLDQP 209 (393)
Q Consensus 187 kLqKrmdkLe~EK-r~LQ~~Leq~ 209 (393)
.||+.+...-..- ..|+..+.++
T Consensus 582 ~~~~~v~~~~s~~~~~l~~~~~~~ 605 (1041)
T KOG0243|consen 582 TLHGLVASSSSQQISQLTTMLAQM 605 (1041)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhh
Confidence 6666665544443 2344444443
No 319
>PRK04325 hypothetical protein; Provisional
Probab=55.16 E-value=89 Score=25.32 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQ 203 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ 203 (393)
|...+.+|++++..|....+.++
T Consensus 35 Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 35 QQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444566666666655544444
No 320
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=55.00 E-value=14 Score=29.68 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 37 LQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 37 Lqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
+++|..+||..+..+..|+..|+.||..||..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666666666777777777777777753
No 321
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=54.85 E-value=2.8e+02 Score=29.13 Aligned_cols=96 Identities=13% Similarity=0.232 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy15959 88 MKKIQALKKEKETLAHHYEQEEEFLTNDLSRKL-NQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQL 166 (393)
Q Consensus 88 ~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL-~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qL 166 (393)
.++|...+.|...+..++.++-+.+...+..+. ....+-+..-..++++|.+..++.|.+++-.|-- .
T Consensus 59 e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv-----------~ 127 (445)
T PRK13428 59 TKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESV-----------R 127 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 344566666666666666655555554443332 3344455555667777777888888777755422 2
Q ss_pred HHhHhHHHHhH--HHHHHHHHHHHHHHHHHH
Q psy15959 167 RREKVELENTL--EQEQEALVNKLWKRMDKL 195 (393)
Q Consensus 167 rrEKVeLEn~L--EqEQE~LVNkLqKrmdkL 195 (393)
..+|+ |.+.| +..|..||++..++++.+
T Consensus 128 ~A~ki-l~~~l~d~~~~~~lId~~i~~l~~~ 157 (445)
T PRK13428 128 QAGEL-VRNHVADPAQQSATVDRFLDELDAM 157 (445)
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 23333 22333 355677777777777653
No 322
>KOG1923|consensus
Probab=54.42 E-value=33 Score=38.97 Aligned_cols=16 Identities=31% Similarity=0.231 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHh
Q psy15959 276 RKLQREVERREALCRH 291 (393)
Q Consensus 276 ~kl~~E~erreal~r~ 291 (393)
+|+.-|.||--..|+-
T Consensus 223 ~k~~~~~e~~lk~~~~ 238 (830)
T KOG1923|consen 223 QKLSIEKERSLKAIAR 238 (830)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544443
No 323
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=54.16 E-value=4.1e+02 Score=30.89 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhh
Q psy15959 192 MDKLEAEKRILQIKL 206 (393)
Q Consensus 192 mdkLe~EKr~LQ~~L 206 (393)
+.+|+.=.|.||.-+
T Consensus 538 i~RL~eLtR~LQ~Sm 552 (861)
T PF15254_consen 538 IERLRELTRTLQNSM 552 (861)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444445555443
No 324
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.86 E-value=1.2e+02 Score=24.63 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAE 77 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaE 77 (393)
.+|..+|+.|-+--..|+.|=..++.+..+++.|...|.........++|
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766666667777777776666655554444443
No 325
>PLN02939 transferase, transferring glycosyl groups
Probab=53.61 E-value=4.4e+02 Score=31.10 Aligned_cols=59 Identities=29% Similarity=0.341 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
-|...++-|+.|...++.++.-|+.+-++. .|-+.-|-+|.|.-.-|.+-.+.|+.++-
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (977)
T PLN02939 223 SLSKELDVLKEENMLLKDDIQFLKAELIEV-----AETEERVFKLEKERSLLDASLRELESKFI 281 (977)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444432 33344455566666666666666666663
No 326
>KOG3915|consensus
Probab=53.56 E-value=1.9e+02 Score=31.87 Aligned_cols=93 Identities=22% Similarity=0.334 Sum_probs=56.2
Q ss_pred cccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15959 17 ALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKK 96 (393)
Q Consensus 17 ~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~Lkk 96 (393)
++|.+++--+.|+|..-|..| ||+.++-.+++-+..+.|-..||...... +.
T Consensus 491 p~i~ada~SS~eTll~niq~l------lkva~dnar~qekQiq~Ek~ELkmd~lre----------------------re 542 (641)
T KOG3915|consen 491 PFIFADALSSIETLLTNIQGL------LKVAIDNARAQEKQIQLEKTELKMDFLRE----------------------RE 542 (641)
T ss_pred cccccccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH
Confidence 446666666678888877776 45556655655555666555555442222 12
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHH
Q psy15959 97 EKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ 138 (393)
Q Consensus 97 EKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQ 138 (393)
=++.|++++ ++|--+--.++|++.+=++-|..|..+|+-|-
T Consensus 543 lreslekql-~~ErklR~~~qkr~kkEkk~k~k~qe~L~~~s 583 (641)
T KOG3915|consen 543 LRESLEKQL-AMERKLRAIVQKRLKKEKKAKRKLQEALEFES 583 (641)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 234455555 33445566777777777777777777777664
No 327
>PRK00295 hypothetical protein; Provisional
Probab=53.29 E-value=1.2e+02 Score=24.30 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
....|-+.|++|+.|....+.|-.+|..
T Consensus 24 Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 24 LNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566677777666666666544
No 328
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=53.10 E-value=91 Score=32.81 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLRQT-SVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFL 112 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~-sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~L 112 (393)
...|++||..||.|.+.++..+..| |+..+|.. ..++.. . ++ +.+++.|=++..++ .-| ++...=-+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~s~V~E~vet-~-dv---~~d~i~Kimnk~Re--~vl---fq~d~~~l 101 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERL--ENEMLRSHVCEDVET-N-DV---IYDKIVKIMNKMRE--LVL---FQRDDLKL 101 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhhhhhhhHHHH-H-HH---HHHHHHHHHHHHhh--hhh---hccccccc
Confidence 4578899999998888888888888 44444422 122222 1 11 66777776666422 111 22222234
Q ss_pred HHHHHHHHHHHhHHHH
Q psy15959 113 TNDLSRKLNQLTEEKY 128 (393)
Q Consensus 113 TN~L~KKL~qL~~EKv 128 (393)
.-.|..+++.|-+=|+
T Consensus 102 d~~lLARve~LlRlK~ 117 (420)
T PF07407_consen 102 DSVLLARVETLLRLKD 117 (420)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 4556666666655554
No 329
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=52.47 E-value=1.6e+02 Score=25.62 Aligned_cols=70 Identities=30% Similarity=0.399 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQE-EEFISNTLMKKIQALKK 96 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqE-EEfItNtL~KKL~~Lkk 96 (393)
++.+...+..|-+.|-.+.-+++..|.++..+..+.+.|.........+...= ..|=-.+|..+|+..-.
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~ 106 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAAS 106 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 45566666666666666667778888888888888888887766555433222 23444445555444433
No 330
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=52.32 E-value=71 Score=28.35 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=14.6
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 20 MPPSPVTREQLQKRIESLQQQNRVLKVEL 48 (393)
Q Consensus 20 ~p~s~~~~e~~~~ri~sLqqenr~lk~el 48 (393)
+|.-.++.++-..||..|+++|+....++
T Consensus 92 LPg~~~see~Q~~~i~~L~~E~~~~~~el 120 (144)
T PF11221_consen 92 LPGIEVSEEEQLKRIKELEEENEEAEEEL 120 (144)
T ss_dssp STTSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555443
No 331
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=51.64 E-value=85 Score=27.80 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
|.-.++|..++++...++..+..+...+-..+..++..|
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l 44 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPL 44 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777666666665555554443
No 332
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=51.51 E-value=92 Score=27.58 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHH
Q psy15959 84 SNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQ 136 (393)
Q Consensus 84 tNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEq 136 (393)
.|.-+++|-.++.+...+...+..+=.-|...+...+..|+.....|+..+..
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~ 57 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678899999999999999998888888888888888888888777766653
No 333
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=51.47 E-value=2.4e+02 Score=27.38 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELEN----TLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDM 219 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn----~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~ 219 (393)
++..-+.++-+....++.+++++......++. +|..-.|.|-+.+--++..|+.....++..+.+
T Consensus 42 ~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~----------- 110 (225)
T COG1842 42 KARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ----------- 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 33333334444444444444444444444433 344444556665555666666555555555442
Q ss_pred CCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH----------HHhHHHHHHHHHHHHHHHHHH
Q psy15959 220 NNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVR----------EENLRLQRKLQREVERREALC 289 (393)
Q Consensus 220 ~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~r----------eeN~rl~~kl~~E~erreal~ 289 (393)
+..++..||..+..|..++..+.+.+..=+..+....-.-+ ..+...=.++..=++++++-+
T Consensus 111 --------~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a 182 (225)
T COG1842 111 --------AEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARA 182 (225)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665555444433333222221100 345555556666678888877
Q ss_pred Hhhhhc
Q psy15959 290 RHLSES 295 (393)
Q Consensus 290 r~lses 295 (393)
....+.
T Consensus 183 ~~~~el 188 (225)
T COG1842 183 EAAAEL 188 (225)
T ss_pred HHhHHh
Confidence 777664
No 334
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=51.21 E-value=1.6e+02 Score=31.45 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC--CccchhHhHH
Q psy15959 156 TDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGD--TASNLSTHIH 233 (393)
Q Consensus 156 k~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~d--t~~~l~~~i~ 233 (393)
+.+....+.-|+.+=.++-.++ .-|..+++++.-+......+.-.+-..-....+++.++....++. ......+.|+
T Consensus 80 k~h~d~~i~~l~~~i~~~k~~~-~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 158 (426)
T smart00806 80 KKHIDDEIDTLQNELDEVKQAL-ESQREAIQRLKERQQNSAANIARPAASPSPVLASSSSAISLANNPDKLNKEQRAELK 158 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhcccCcccccCCCCcccccccccccccCCCcccchhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHH
Q psy15959 234 SLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVRE 269 (393)
Q Consensus 234 ~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~re 269 (393)
.||+|++.||+.-...+......|..+...-..++.
T Consensus 159 ~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~ 194 (426)
T smart00806 159 SLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS 194 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 335
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=50.74 E-value=2.9e+02 Score=28.16 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=55.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy15959 132 QTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVS 211 (393)
Q Consensus 132 ~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS 211 (393)
.+-..+++.++++|.-.+.. ...+..++..|...|..|......=.++| +.|.++|..|..-..-+|..|..|..
T Consensus 83 ~~~~~~H~lml~RL~~EL~~----Rk~L~~~~~el~~~k~~l~~~~~~k~~~L-~~l~~~L~~l~~a~~plq~~l~~~~~ 157 (355)
T PF09766_consen 83 LTEDDEHQLMLARLEFELEQ----RKRLEEQLKELEQRKKKLQQENKKKKKFL-DSLPPQLKSLKKAAKPLQEYLGLPHT 157 (355)
T ss_pred cCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34455667777777665522 33456677777888888888776666666 88999999999999999999987654
Q ss_pred C
Q psy15959 212 D 212 (393)
Q Consensus 212 ~ 212 (393)
.
T Consensus 158 ~ 158 (355)
T PF09766_consen 158 K 158 (355)
T ss_pred c
Confidence 4
No 336
>KOG0994|consensus
Probab=50.54 E-value=5.7e+02 Score=31.49 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQ 107 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~Eq 107 (393)
...+..+...+++..--...+-....++..|.--...||....+....|++=+.-.--....-+.+-+.-+ .|...|+.
T Consensus 1594 ~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~ 1672 (1758)
T KOG0994|consen 1594 RLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYEL 1672 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHh--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHH
Q psy15959 108 EEEFLTNDLSRKLNQLT--EEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALV 185 (393)
Q Consensus 108 EEE~LTN~L~KKL~qL~--~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LV 185 (393)
.++.|.||.+... +++.+.-.+-....=.-.|...+.|+.|+.+....+-.|+....+-..||..+++=-.+|-
T Consensus 1673 ----~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1673 ----VDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred ----HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Q ss_pred HH
Q psy15959 186 NK 187 (393)
Q Consensus 186 Nk 187 (393)
.|
T Consensus 1749 ~r 1750 (1758)
T KOG0994|consen 1749 ER 1750 (1758)
T ss_pred hh
No 337
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=50.52 E-value=2e+02 Score=26.20 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 72 IQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEK 151 (393)
Q Consensus 72 iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~Kkiek 151 (393)
+..+.++|. .+-.+...+..|+.|...+.. .--+.|.....+|+.+-..|...|..|...+-+.+.--|.-
T Consensus 43 ~vtk~d~e~--~~~~~~a~~~eLr~el~~~~k-------~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~ 113 (177)
T PF07798_consen 43 LVTKSDLEN--QEYLFKAAIAELRSELQNSRK-------SEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNL 113 (177)
T ss_pred HHhHHHHHH--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544443 234455666777776654322 22366777788888888888888887777666655444322
Q ss_pred HHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 152 LEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEK 199 (393)
Q Consensus 152 LeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EK 199 (393)
++.........+...=.++.+.+..| ++.|..+|+.+..+.
T Consensus 114 ---eK~~~r~e~~~~~~ki~e~~~ki~~e----i~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 114 ---EKGRIREEQAKQELKIQELNNKIDTE----IANLRTEIESLKWDT 154 (177)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 22222222333333334455555544 455777777666553
No 338
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=49.93 E-value=2e+02 Score=25.99 Aligned_cols=84 Identities=29% Similarity=0.420 Sum_probs=44.3
Q ss_pred cccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q psy15959 12 SMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKI 91 (393)
Q Consensus 12 s~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL 91 (393)
..||..|-+|--++|.|.=..=++.+.+.-+.-|. .+|.+|.. .+++|
T Consensus 74 ~~d~~~i~v~iP~~T~E~R~~l~k~~k~~~E~~k~--------------~iR~iR~~------------------~~~~l 121 (165)
T PF01765_consen 74 QNDGNTIRVPIPPPTEERRKELVKQAKKIAEEAKV--------------SIRNIRRD------------------AMKKL 121 (165)
T ss_dssp EEETTEEEEE--SSSHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHHHH
T ss_pred ccCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHHHH
Confidence 47888888988899987644444333333222221 22333332 23344
Q ss_pred HHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 92 QALKKE---KETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 92 ~~LkkE---Ke~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
..+++. .++...+++.+=+-+|++-.+++..+-+.|
T Consensus 122 kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 160 (165)
T PF01765_consen 122 KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK 160 (165)
T ss_dssp HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444442 355555566656666666677777666655
No 339
>KOG2077|consensus
Probab=49.59 E-value=97 Score=34.82 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15959 84 SNTLMKKIQALKKEKETLAH 103 (393)
Q Consensus 84 tNtL~KKL~~LkkEKe~L~~ 103 (393)
-|.|..|.++|.-|+..|.-
T Consensus 324 KNDLIakVDeL~~E~~vLrg 343 (832)
T KOG2077|consen 324 KNDLIAKVDELTCEKDVLRG 343 (832)
T ss_pred HHHHHHHHHhhccHHHHHhh
Confidence 34555555555555444433
No 340
>KOG0239|consensus
Probab=49.36 E-value=4.2e+02 Score=29.68 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HhHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q psy15959 232 IHSLRSEVMRLRNQLANTQQEHTEKMERYVKD-------EKNVREENLRLQRKLQREVERREALCRHL 292 (393)
Q Consensus 232 i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~e-------e~~~reeN~rl~~kl~~E~erreal~r~l 292 (393)
|..|+.++..|++.+..+..+....+..|... -..+.+.|..|..+. .|.+=|-+|.+++
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i 309 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEI 309 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 55555555555555555544444433333322 222333444455555 4444444444444
No 341
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.28 E-value=88 Score=23.87 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15959 48 LETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 48 le~~k~R~k~LqeEnr~LR~ 67 (393)
++.+..++..|..+|..|+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544443
No 342
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=49.20 E-value=4e+02 Score=29.40 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
.+...+...-+++...|+.+++.+...+..+..+.+.+......+-..
T Consensus 317 ~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e 364 (594)
T PF05667_consen 317 ETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEE 364 (594)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667778888888888888888888888888888765554433
No 343
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=49.17 E-value=74 Score=27.27 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNL 65 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~L 65 (393)
+..|++.++.+..+.+.++..++.+.++++.|
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 344
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=49.03 E-value=2e+02 Score=25.83 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLDQPVSD 212 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Leq~vS~ 212 (393)
|++|.++.++++.+...|+..|-....+
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6788888888888888888887654443
No 345
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=48.93 E-value=18 Score=33.21 Aligned_cols=65 Identities=26% Similarity=0.343 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy15959 182 EALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEH---TEKME 258 (393)
Q Consensus 182 E~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~---~~k~~ 258 (393)
-...+.|+.+|..|..++..+. .+|.+|..|+++|+..+..+++.. .....
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~--------------------------~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~ 60 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLR--------------------------AQVRRLCQENDWLRGELANTQQKLQESEQEVA 60 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHH--------------------------T-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3456677888888888877665 567788899999999999888776 44444
Q ss_pred HhHHHHhHHHHHhH
Q psy15959 259 RYVKDEKNVREENL 272 (393)
Q Consensus 259 ~~~~ee~~~reeN~ 272 (393)
+.-.+-++++.=+.
T Consensus 61 ~Lpee~~~Lqfl~~ 74 (181)
T PF09311_consen 61 QLPEEVKHLQFLVS 74 (181)
T ss_dssp --------------
T ss_pred cCcchHHHHHHHHH
Confidence 44444445444333
No 346
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=48.46 E-value=72 Score=36.90 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHD 218 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~ 218 (393)
+|.+++++|+.+...++.+|....-.+-.-+.-++.+.+.+ ..+..++.+++.....|.. ..++|...+..+
T Consensus 846 rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl-~~~~~~l~~le~~l~~L~~--~~~~~~~~~~~~ 917 (1052)
T PRK14900 846 RVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARA-EELREKRGKLEAHRAMLSG--SEANSARRDTME 917 (1052)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc--cccccccccccc
Confidence 44444444444444444455544443333455566666666 6777777777777766665 234454444443
No 347
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.20 E-value=1.4e+02 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
|-..+.+|++++..|....+.+....
T Consensus 34 Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 34 HEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33444555666666655555554433
No 348
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.92 E-value=1.5e+02 Score=24.00 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 180 EQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 180 EQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
|-|..+..|.++++.+..+...|+.+|.
T Consensus 44 e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 44 ELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345566777777777777777777765
No 349
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=47.86 E-value=1.2e+02 Score=27.21 Aligned_cols=49 Identities=29% Similarity=0.448 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
.-.+.-.+..|.++..++=.++..+|..+.+|-+||-.||-.+.++..+
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 3456667888888888888899999999999999999999887766543
No 350
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.16 E-value=1.7e+02 Score=24.45 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCC
Q psy15959 178 EQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSD-PSSPH 217 (393)
Q Consensus 178 EqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~-~~SP~ 217 (393)
=.||-..+.|++.+|.-|-.....+|...-.+++. +|+|.
T Consensus 31 laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~~~~~etpPPH 71 (72)
T COG2900 31 LAEQQLVIDKLQAQLRLLTEKLKDLQPSAIASPAEETPPPH 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcccCCCCC
Confidence 35788888888888888888888887776555555 55553
No 351
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=47.11 E-value=2.6e+02 Score=26.49 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy15959 47 ELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 47 ele~~k~R~k~LqeEnr~LR~~ 68 (393)
++..+..++..+.-||+.||..
T Consensus 20 ~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 20 ELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666666654
No 352
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.93 E-value=45 Score=35.89 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15959 86 TLMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~ 105 (393)
.+..||+.|..|...|..++
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888887
No 353
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=46.20 E-value=3.8e+02 Score=28.16 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=6.0
Q ss_pred HHhHHHHHHH
Q psy15959 269 EENLRLQRKL 278 (393)
Q Consensus 269 eeN~rl~~kl 278 (393)
..|..|+|.|
T Consensus 214 ~~~~~lrr~l 223 (445)
T PRK13428 214 DREPVLTKHL 223 (445)
T ss_pred cccHHHHHHc
Confidence 3466666664
No 354
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=46.14 E-value=3.3e+02 Score=27.55 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHH
Q psy15959 83 ISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 83 ItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LE 135 (393)
|-.+|..+...|+.++++. .+..+.+.|..|+.++...+..|=..|-
T Consensus 132 l~~sL~~r~~elk~~~~~~------se~rv~~el~~K~~~~k~~~e~Ll~~Lg 178 (268)
T PF11802_consen 132 LLESLNKRHEELKNQVETF------SESRVFQELKTKIEKIKEYKEKLLSFLG 178 (268)
T ss_pred HHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666544443 3456678999998888877765544443
No 355
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=45.98 E-value=2.3e+02 Score=25.54 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15959 45 KVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 45 k~ele~~k~R~k~LqeEnr~LR 66 (393)
+.+++.++.++.+++..+..+.
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~ 26 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLE 26 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666555555555443
No 356
>KOG4425|consensus
Probab=45.83 E-value=21 Score=39.13 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=8.7
Q ss_pred cccccCCCCCCCCC-Cccc
Q psy15959 346 QTTVMPIPPPVHSR-PQRI 363 (393)
Q Consensus 346 ~~~~~~~~~~~~~r-~~~f 363 (393)
..++.+|+-|-.++ .+|-
T Consensus 72 ettltpivlp~kkqriek~ 90 (900)
T KOG4425|consen 72 ETTLTPIVLPHKKQRIEKH 90 (900)
T ss_pred ccccCccccchhhhHhhcC
Confidence 33445666554433 4443
No 357
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=45.64 E-value=6 Score=33.12 Aligned_cols=43 Identities=35% Similarity=0.575 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSV 70 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv 70 (393)
+.+...++.|..+|..|+.++..+..++..+......|+....
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 5556667778888888887777777777777777766665543
No 358
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=45.56 E-value=4e+02 Score=28.33 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHH-----HHHHHHH---HHhHHHHHHHHHHHHHHH
Q psy15959 31 QKRIESLQQQNRVLKVELETY----KLQLRALQEENKNLRQTSVNIQ-----AKAEQEE---EFISNTLMKKIQALKKEK 98 (393)
Q Consensus 31 ~~ri~sLqqenr~lk~ele~~----k~R~k~LqeEnr~LR~~sv~iq-----~kaEqEE---EfItNtL~KKL~~LkkEK 98 (393)
...|.+|+.+..+||+--... +.-+.++.+....++.++.+.. +-++... .=.+-.|..|++.|+---
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668888999999998633222 3334445555555555433332 1111110 011345666666666655
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHh
Q psy15959 99 ETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVV--NKLMRKIEKLEAETDAKQNNLEQLRREKVELENT 176 (393)
Q Consensus 99 e~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lV--NkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~ 176 (393)
++|-..|-+ .=+.-..++|..+.++...+...|..=++|+- .-.||+|=. .+| ++|--|+.
T Consensus 230 E~LRkDV~~---RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE---------~EL-----~~V~eEQq 292 (424)
T PF03915_consen 230 EDLRKDVVQ---RGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWE---------SEL-----QKVCEEQQ 292 (424)
T ss_dssp HHHHHHHHH---H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-----HHHHHHHH
T ss_pred HHHHHHHHH---cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH---------HHH-----HHHHHHHH
Confidence 555544422 11111223344444444444444443333221 133555422 122 46667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 177 LEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 177 LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
+-..||.|+.-|...+.++..=-..++.....
T Consensus 293 fL~~QedL~~DL~eDl~k~~etf~lveq~~~~ 324 (424)
T PF03915_consen 293 FLKLQEDLLSDLKEDLKKASETFALVEQCTEE 324 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998877777776543
No 359
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=45.56 E-value=1.8e+02 Score=32.54 Aligned_cols=107 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhcc--HHHhhc----cc
Q psy15959 242 LRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEMEEERHY--NEIAHS----MR 315 (393)
Q Consensus 242 Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsesesslE~~eer~f--n~~~~~----~r 315 (393)
||.||..+|++......+-......+++.+.+==.+|..++.|.| |||-| ||.-.. .|
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLE----------------DEKKFL~nE~r~~s~~~~r 65 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLE----------------DEKKFLNNELRSLSSSKRR 65 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhhhhc
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCcccc--CCCCCCCC
Q psy15959 316 LVGSSPSSSRPLSPGASMLTTKEPRCFACGQTTVMPIPPPVHSRPQRIK--TPLLSVEQ 372 (393)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~--~p~~~~~~ 372 (393)
+..+.+++.--.++++. .|+......-....|...+..+-- +|.+|..|
T Consensus 66 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~s~~~k~~~~ep~~~~~~l~~ 116 (654)
T PF09798_consen 66 KNVSSPSGTNSTSNSTS--------TPESSSAANTSEESSPKSKKREIEPKKPYVPLNP 116 (654)
T ss_pred ccccccccccccccccc--------CCCcccccccccccchhhcccccCccccccccCc
No 360
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=45.53 E-value=1.2e+02 Score=24.72 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=38.4
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHH---HHHHHHHHHHH
Q psy15959 227 NLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRK---LQREVERREAL 288 (393)
Q Consensus 227 ~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~k---l~~E~erreal 288 (393)
....+|..|+.|+=.||=++..++......-. ..-..+-.+|+.|.-- |++|+.++..+
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~---~~~~~~~keNieLKve~~~L~~el~~~~~~ 65 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGP---ESIEELLKENIELKVEVESLKRELQEKKKL 65 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999877764322 2333444566655433 45555544433
No 361
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=45.45 E-value=2.5e+02 Score=25.94 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy15959 49 ETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 49 e~~k~R~k~LqeEnr~LR~~ 68 (393)
+.+..++.....+...|+..
T Consensus 39 e~~~~~n~~~~~e~~~L~~d 58 (158)
T PF09744_consen 39 ESLASRNQEHEVELELLRED 58 (158)
T ss_pred HHHHHhhhhhhhHHHHHHHH
Confidence 33333333333333333333
No 362
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.36 E-value=1.1e+02 Score=23.28 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
+..+.++...++.+++.++.++..|+.++..|+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444445555555555666555553
No 363
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.35 E-value=2.9e+02 Score=26.70 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=16.0
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 224 TASNLSTHIHSLRSEVMRLRNQLANTQQ 251 (393)
Q Consensus 224 t~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~ 251 (393)
....+..+|..++..|..|..=|..=++
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~ 188 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQ 188 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666665544433
No 364
>PF13514 AAA_27: AAA domain
Probab=45.27 E-value=5.5e+02 Score=29.78 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15959 141 VVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQ----EQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSP 216 (393)
Q Consensus 141 lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEq----EQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP 216 (393)
...++..+++.++.+....+..+..+..+...|-..... +-..++. ...+...+..+...++..|..... ..+.
T Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~-~~~~ 879 (1111)
T PF13514_consen 802 ERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEE-RAEERRELREELEDLERQLERQAD-GLDL 879 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcC-cccH
Confidence 334555555555555555555555555555544332211 1111122 234456666777777777744211 1112
Q ss_pred CCCC---CCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 217 HDMN---NGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHT 254 (393)
Q Consensus 217 ~~~~---~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~ 254 (393)
.++. .+.++..+...+..|..++..|..++..+..+..
T Consensus 880 ~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~ 920 (1111)
T PF13514_consen 880 EELEEELEELDPDELEAELEELEEELEELEEELEELQEERA 920 (1111)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1234556667777777777777776666654443
No 365
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=45.04 E-value=32 Score=27.56 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHH
Q psy15959 237 SEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQ 279 (393)
Q Consensus 237 ~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~ 279 (393)
.-|..+..-+..+|++|..-....-.|...++.+|..|+-+|.
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~ 45 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLI 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeee
Confidence 4566778888999999988766666666666666666655543
No 366
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=44.94 E-value=5.5e+02 Score=29.75 Aligned_cols=14 Identities=43% Similarity=0.914 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCcc
Q psy15959 326 PLSPGASMLTTKEPRCFACGQT 347 (393)
Q Consensus 326 ~~~p~~~~~~~~~~~~~~~~~~ 347 (393)
-|.||-+ ||-||.+
T Consensus 499 ~L~~GeP--------CPVCGS~ 512 (1047)
T PRK10246 499 QLQAGQP--------CPLCGST 512 (1047)
T ss_pred hCCCCCC--------cCCCCcc
Confidence 3667776 9999998
No 367
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.82 E-value=73 Score=27.27 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy15959 51 YKLQLRALQEENKNLRQT 68 (393)
Q Consensus 51 ~k~R~k~LqeEnr~LR~~ 68 (393)
+..+++.|+.++..+...
T Consensus 47 wek~v~~L~~e~~~l~~E 64 (87)
T PF12709_consen 47 WEKKVDELENENKALKRE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555444
No 368
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=44.53 E-value=84 Score=30.40 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA 74 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~ 74 (393)
.+....+||+.|..+++.....++.|.++|..|+..+..++.
T Consensus 119 AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~ 160 (200)
T PF07412_consen 119 ALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQY 160 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888877777777777777777777665444433
No 369
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=44.48 E-value=1.7e+02 Score=23.63 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhH
Q psy15959 139 ERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTL 177 (393)
Q Consensus 139 E~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~L 177 (393)
|..++.|+.+++.+.......+..+..|++|.......|
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l 42 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQL 42 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666777777777766655554
No 370
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.38 E-value=2.2e+02 Score=25.12 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=11.2
Q ss_pred cCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 19 MMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRAL 58 (393)
Q Consensus 19 ~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~L 58 (393)
++|---+-.++|..|++.-+++....+..+..+..+++.|
T Consensus 24 ~~Pv~i~GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L 63 (141)
T PF13874_consen 24 LIPVPIIGFEDLKKRVEAQEEEIAQHRERLKEINDKLEEL 63 (141)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778889999999998888776666666555555555
No 371
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.28 E-value=3.5e+02 Score=28.41 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15959 86 TLMKKIQALKKEKETLAHH 104 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~ 104 (393)
.|.++|.+|+.+...+..+
T Consensus 75 ~l~~~l~~l~~~~~~~~~~ 93 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDR 93 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566665555555443
No 372
>KOG3156|consensus
Probab=44.11 E-value=3.3e+02 Score=26.95 Aligned_cols=104 Identities=27% Similarity=0.426 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCC
Q psy15959 137 EQERVVNKLMRKIEKLEAETDAKQ-NNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQP-VSDPS 214 (393)
Q Consensus 137 EQE~lVNkL~KkiekLeaEk~~~q-~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~-vS~~~ 214 (393)
+|+.++=.++.-+.+++.+..+.+ .+..-||+|-..|-| |.|.+-+.|.-.+++..++-| |+..|+-. +-|-+
T Consensus 91 qq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~Eklkn----dlEk~ks~lr~ei~~~~a~~r-LdLNLEkgr~~d~~ 165 (220)
T KOG3156|consen 91 QQEKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKN----DLEKLKSSLRHEISKTTAEFR-LDLNLEKGRIKDES 165 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcchhce-eecchhhccccchh
Confidence 445555555555555555554433 345556666555444 455677788888888777754 44445443 22333
Q ss_pred CCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 215 SPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQE 252 (393)
Q Consensus 215 SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e 252 (393)
+..+.+--.+. ..+-.||..||.++.+..-+
T Consensus 166 ~~~~l~~~e~s-------~kId~Ev~~lk~qi~s~K~q 196 (220)
T KOG3156|consen 166 SSHDLQIKEIS-------TKIDQEVTNLKTQIESVKTQ 196 (220)
T ss_pred hhcchhHhHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33321111111 34557888888888776544
No 373
>PLN02372 violaxanthin de-epoxidase
Probab=44.09 E-value=3.8e+02 Score=29.07 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 87 LMKKIQALKKEKETLAHHYEQEEEFLTND--LSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 87 L~KKL~~LkkEKe~L~~~~EqEEE~LTN~--L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
+.|.+.++.+|.+.-+.+++.+++-+... |...+.+|++.-+.....|-.|+-.+.++|.+...++
T Consensus 377 i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~~~~~v 444 (455)
T PLN02372 377 IVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEASEV 444 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666655555 6667777666655555555555555555555444333
No 374
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=43.55 E-value=3.1e+02 Score=26.44 Aligned_cols=86 Identities=27% Similarity=0.422 Sum_probs=55.5
Q ss_pred cccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy15959 10 SNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89 (393)
Q Consensus 10 ~ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~K 89 (393)
..++||..|-+|.-+.|-|.=+.-++.+...-..-|+. +|.+|.. .+.
T Consensus 92 nP~~dG~~IRv~~P~lTeErRkelvK~~k~~~Eeakva--------------iRniRrd------------------a~d 139 (187)
T COG0233 92 NPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVA--------------VRNIRRD------------------AND 139 (187)
T ss_pred CcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH------------------HHH
Confidence 45789999999999999876544444443333222221 2333332 334
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 90 KIQALKKEK---ETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 90 KL~~LkkEK---e~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
+|..+.+++ ++-..++|.+=+-+|+..-++|..+-+.|
T Consensus 140 ~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~~~K 180 (187)
T COG0233 140 KIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELLKDK 180 (187)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 67777788888888888888888888777
No 375
>KOG3091|consensus
Probab=43.27 E-value=4.9e+02 Score=28.66 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=31.5
Q ss_pred cCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 19 MMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 19 ~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
.||---|-.++|..|++--.++ .++.+.|++++.+.+..|..
T Consensus 328 liPVpvvGF~dL~~R~K~Q~q~-------~~~~r~ri~~i~e~v~eLqk 369 (508)
T KOG3091|consen 328 LIPVPVVGFEDLRQRLKVQDQE-------VKQHRIRINAIGERVTELQK 369 (508)
T ss_pred ccceeccchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 4555566778888888765555 57888889999988888874
No 376
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=43.20 E-value=50 Score=29.56 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=31.7
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHH
Q psy15959 225 ASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQR 280 (393)
Q Consensus 225 ~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~ 280 (393)
..+++.-|..|-.|+.-||+.|..+=. |--++|-||-+|+.+|..
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvE-----------EN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVE-----------ENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHhhHHHHHHHhCC
Confidence 345666677777778888777766544 444588899999888754
No 377
>KOG3809|consensus
Probab=43.14 E-value=4.1e+02 Score=29.22 Aligned_cols=119 Identities=25% Similarity=0.273 Sum_probs=72.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 79 EEEFISNTLMKKIQALKKEKETLAHHYEQEE---EFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAE 155 (393)
Q Consensus 79 EEEfItNtL~KKL~~LkkEKe~L~~~~EqEE---E~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaE 155 (393)
+++----.|.+||..-++|.+++....+-++ ..++-.-.+++.+|+.---+|-.-. + =|-|=++=...+
T Consensus 437 ~~ldaqG~LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa-----~---PLgkl~D~i~eD 508 (583)
T KOG3809|consen 437 DRLDAQGALVQKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSA-----Y---PLGKLFDFINED 508 (583)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhh-----c---cHHHHHhhhhhh
Confidence 3333446899999999999999877765433 2333333344444443332221100 0 122222333445
Q ss_pred HHhhhhhHHHHHHhHhHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q psy15959 156 TDAKQNNLEQLRREKVELENTLEQEQEAL---VNKLWKRMDKLEAEKRILQIK 205 (393)
Q Consensus 156 k~~~q~~L~qLrrEKVeLEn~LEqEQE~L---VNkLqKrmdkLe~EKr~LQ~~ 205 (393)
..++|.+|..-|.|--..+..|.+||-.- +..|+-.|..|++++..-+..
T Consensus 509 ~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~ 561 (583)
T KOG3809|consen 509 IDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEE 561 (583)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999998653 566777777777665444433
No 378
>PRK14011 prefoldin subunit alpha; Provisional
Probab=42.86 E-value=2.6e+02 Score=25.41 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 46 VELETYKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 46 ~ele~~k~R~k~LqeEnr~LR~~sv~i 72 (393)
..|+.|..++..|+..+..|+.+..++
T Consensus 10 ~~l~~~~~qie~L~~si~~L~~a~~e~ 36 (144)
T PRK14011 10 MALEVYNQQVQKLQEELSSIDMMKMEL 36 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666665554333
No 379
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=42.36 E-value=3.2e+02 Score=26.32 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=45.0
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHH---HHHHHHHHHHHH
Q psy15959 118 RKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQE---ALVNKLWKRMDK 194 (393)
Q Consensus 118 KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE---~LVNkLqKrmdk 194 (393)
..+.++..|+..+-..|. --|.-+++|.++.+++..-...+..+=+-|++.-.+....+..++. .|...-+.+|+.
T Consensus 69 ~~i~~~~~erdq~~~dL~-s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ 147 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLN-SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEK 147 (207)
T ss_pred HHHHHHHhhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666655555544 3455566777777777776666666555566555555555444432 233333344444
Q ss_pred HHHHHHHH
Q psy15959 195 LEAEKRIL 202 (393)
Q Consensus 195 Le~EKr~L 202 (393)
.+.+...+
T Consensus 148 ANeei~~v 155 (207)
T PF05010_consen 148 ANEEIAQV 155 (207)
T ss_pred HHHHHHHH
Confidence 44443333
No 380
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.29 E-value=1e+02 Score=31.70 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=9.3
Q ss_pred HHHHHHHHHhHHHHHHHHh
Q psy15959 115 DLSRKLNQLTEEKYRLEQT 133 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~ 133 (393)
.|.+++..|.++...+...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~ 349 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEE 349 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444333
No 381
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=42.13 E-value=3e+02 Score=25.93 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=36.3
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15959 22 PSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA 74 (393)
Q Consensus 22 ~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~ 74 (393)
++..+.++|..++.........+...+..+..++..++.--..++........
T Consensus 75 ~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~ 127 (240)
T PF12795_consen 75 LANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQ 127 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45677889988888888887777777777766666666655555554444433
No 382
>KOG1923|consensus
Probab=42.09 E-value=1.5e+02 Score=34.09 Aligned_cols=40 Identities=10% Similarity=-0.046 Sum_probs=18.7
Q ss_pred HHHHHHHhHHHHhHHHHHhH------HHHHHHHHHHHHHHHHHHhh
Q psy15959 253 HTEKMERYVKDEKNVREENL------RLQRKLQREVERREALCRHL 292 (393)
Q Consensus 253 ~~~k~~~~~~ee~~~reeN~------rl~~kl~~E~erreal~r~l 292 (393)
..+.+..|+..+.+.=.-|. -+++.+..|+-=-..++.+.
T Consensus 184 ~~~~~s~~A~l~~~s~sl~~er~~~~~~~~~~~dels~m~k~~~~~ 229 (830)
T KOG1923|consen 184 EMAQASAPAPLPGASSSLNKEREPQSYQRKALLDELSCMQKLSIEK 229 (830)
T ss_pred HHHHhcCcccCchhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34445556655554433322 24444555555444444444
No 383
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=41.83 E-value=5e+02 Score=28.40 Aligned_cols=147 Identities=21% Similarity=0.303 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 43 VLKVELETYKLQLRALQEENKNLRQTSVN---------------IQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQ 107 (393)
Q Consensus 43 ~lk~ele~~k~R~k~LqeEnr~LR~~sv~---------------iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~Eq 107 (393)
.||.+|+..+.++.-++.|+..=|.-+.. +-.=++=+|-|+ .|.-|=.+++.-..+.-+.+.+
T Consensus 299 eLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~--~Ll~~Hr~i~egI~dVKkaAak 376 (488)
T PF06548_consen 299 ELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHN--DLLARHRRIMEGIEDVKKAAAK 376 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777776666666665443322211 112344456654 6666666655555554333322
Q ss_pred -----HHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----hHhHHHHhHH
Q psy15959 108 -----EEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRR----EKVELENTLE 178 (393)
Q Consensus 108 -----EEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrr----EKVeLEn~LE 178 (393)
=+-..-|.|-..|..|+-|+..=-..|-.|-..|-..|..--+.+. +-=+=|.+|+. --+.-++...
T Consensus 377 Ag~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVq----AagEllvrl~eaeea~~~a~~r~~~ 452 (488)
T PF06548_consen 377 AGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQ----AAGELLVRLREAEEAASVAQERAMD 452 (488)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1344568899999999887743222222222222222222222221 11234566654 3344566677
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15959 179 QEQEALVNKLWKRMDKLEA 197 (393)
Q Consensus 179 qEQE~LVNkLqKrmdkLe~ 197 (393)
.|||. .++.|+||+|..
T Consensus 453 ~eqe~--ek~~kqiekLK~ 469 (488)
T PF06548_consen 453 AEQEN--EKAKKQIEKLKR 469 (488)
T ss_pred HHHHH--HHHHHHHHHHHH
Confidence 77776 789999999986
No 384
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.83 E-value=1.2e+02 Score=25.86 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
+.+-+++.+++.++++|..+ +.++..|..++..|+.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l-------~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKL-------KARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhC
Confidence 35555566666665555444 4445555555555544
No 385
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.64 E-value=2e+02 Score=24.33 Aligned_cols=43 Identities=33% Similarity=0.439 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 30 LQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 30 ~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~i 72 (393)
|+..|+.|.+.|..|-.+.-.......+|..+|..|+...-.-
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558888888888888877777777788888888887664443
No 386
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=41.63 E-value=2.8e+02 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRA 57 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~ 57 (393)
+.+.|-+++.+-|.-|...+..++.++..
T Consensus 5 EWktRYEtQ~E~N~QLekqi~~l~~kiek 33 (129)
T PF15372_consen 5 EWKTRYETQLELNDQLEKQIIILREKIEK 33 (129)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776666554444444333
No 387
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.45 E-value=86 Score=24.97 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=26.7
Q ss_pred cCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 19 MMPPSPVTREQLQKRIESLQQQNRVLKVELET 50 (393)
Q Consensus 19 ~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~ 50 (393)
.-+.|+++-++|..||..|+.|...++.++..
T Consensus 15 g~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 15 GEDLSLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CCCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999888876543
No 388
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=41.44 E-value=2.4e+02 Score=24.53 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 43 VLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQ 107 (393)
Q Consensus 43 ~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~Eq 107 (393)
.||..+...+.....|..|+..=|.++... +|--|.-|..|+.||..+....-|
T Consensus 3 ~Lr~~v~~er~~~~~L~~ELEeER~AaAsA-----------A~EAMaMI~RLQ~EKAa~~mEA~Q 56 (94)
T PF04576_consen 3 RLRRAVEAERKALAALYAELEEERSAAASA-----------ASEAMAMILRLQEEKAAVEMEARQ 56 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456666677777777777777777664433 355678899999999988776644
No 389
>PRK11546 zraP zinc resistance protein; Provisional
Probab=41.06 E-value=2e+02 Score=26.43 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=5.8
Q ss_pred CCcCCHHHHH
Q psy15959 22 PSPVTREQLQ 31 (393)
Q Consensus 22 ~s~~~~e~~~ 31 (393)
-+++|-||..
T Consensus 41 ~~~LT~EQQa 50 (143)
T PRK11546 41 AAPLTTEQQA 50 (143)
T ss_pred cccCCHHHHH
Confidence 3567766643
No 390
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=41.02 E-value=9 Score=41.11 Aligned_cols=139 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHHH
Q psy15959 142 VNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQE----------------------ALVNKLWKRMDKLEAEK 199 (393)
Q Consensus 142 VNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE----------------------~LVNkLqKrmdkLe~EK 199 (393)
++.|...|+.|+.|+.....+...++.+=..|-..|..... ..+.+|.+.+++|+.+|
T Consensus 144 l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k 223 (619)
T PF03999_consen 144 LEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEK 223 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34455555666666655555555555555555554444442 12346666666666666
Q ss_pred HHHHHhhcCCCCC----------CCCCCC-CCCCCCccch-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q psy15959 200 RILQIKLDQPVSD----------PSSPHD-MNNGDTASNL-STHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNV 267 (393)
Q Consensus 200 r~LQ~~Leq~vS~----------~~SP~~-~~~~dt~~~l-~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~ 267 (393)
...+.+++..... |..-++ |. ..+.++ ..-|..|+.||.||... -..+|..|+.+-
T Consensus 224 ~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~--~~~~~ls~~~i~~l~~El~RL~~l-------K~~~lk~~I~~~--- 291 (619)
T PF03999_consen 224 EEREEKLQELREKIEELWNRLDVPEEEREAFL--EENSGLSLDTIEALEEELERLEEL-------KKQNLKEFIEKK--- 291 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh--hccCcchHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHH---
Confidence 6666665543222 111111 10 001111 23355566666666543 334566666543
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhh
Q psy15959 268 REENLRLQRKLQREVERREALCRHL 292 (393)
Q Consensus 268 reeN~rl~~kl~~E~erreal~r~l 292 (393)
|.|=..|..++..--+=|.+..-.+
T Consensus 292 R~ei~elWd~~~~s~eer~~F~~~~ 316 (619)
T PF03999_consen 292 RQEIEELWDKCHYSEEERQAFTPFY 316 (619)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3444455555555433333333333
No 391
>KOG4343|consensus
Probab=41.01 E-value=29 Score=38.19 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 37 LQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 37 Lqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~i 72 (393)
-.+--+..|.-...+++|+++|..||..||.++..+
T Consensus 293 A~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatL 328 (655)
T KOG4343|consen 293 ACQSRKKKKEYMLGLEARLQALLSENEQLKKENATL 328 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333333444556677889999999999998875433
No 392
>KOG0249|consensus
Probab=40.91 E-value=6.4e+02 Score=29.37 Aligned_cols=81 Identities=26% Similarity=0.423 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 86 TLMKKIQALKKEKETLAHHYEQEEE-----------FLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEA 154 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~EqEEE-----------~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLea 154 (393)
+|-.-++.++.|......+.+-++| .+.-.|.+..+.| ..| +.|++|.+ .+.++++.++.
T Consensus 167 kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAl-e~k----n~L~~e~~----s~kk~l~~~~~ 237 (916)
T KOG0249|consen 167 KLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAAL-EDK----NRLEQELE----SVKKQLEEMRH 237 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHH-HHH----HHHHHHHH----HHHHHHHHHHH
Confidence 3334455555555555444444333 3333333333333 233 34444443 33445555555
Q ss_pred HHHhhhhhHHHHHHhHhHHHH
Q psy15959 155 ETDAKQNNLEQLRREKVELEN 175 (393)
Q Consensus 155 Ek~~~q~~L~qLrrEKVeLEn 175 (393)
++..+....+.||.+-..|++
T Consensus 238 ~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 238 DKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 555555555555555444443
No 393
>PRK00846 hypothetical protein; Provisional
Probab=40.78 E-value=2.1e+02 Score=23.83 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCC
Q psy15959 180 EQEALVNKLWKRMDKLEAEKRILQIKLDQPVSD-PSSPH 217 (393)
Q Consensus 180 EQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~-~~SP~ 217 (393)
+|-..+.+|+.+|..|....+.++.....+.++ +|+|.
T Consensus 38 ~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~~dE~PPPH 76 (77)
T PRK00846 38 DARLTGARNAELIRHLLEDLGKVRSTLFADPADEPPPPH 76 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCcCC
Confidence 366667778888888888888887665444444 56663
No 394
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=40.71 E-value=2.6e+02 Score=24.78 Aligned_cols=31 Identities=45% Similarity=0.609 Sum_probs=22.8
Q ss_pred HhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHH
Q psy15959 157 DAKQNNLEQLRREKVELENTLEQEQEALVNKL 188 (393)
Q Consensus 157 ~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkL 188 (393)
..++.+|+||+.|=..|. .+|+||..++++|
T Consensus 90 ~Ek~~eLERl~~E~~sL~-kve~eQ~~~i~~~ 120 (120)
T PF14931_consen 90 AEKKMELERLRSEYESLQ-KVEQEQNELIQKL 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence 344567788887776665 4799999998875
No 395
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.70 E-value=2.7e+02 Score=25.30 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q psy15959 186 NKLWKRMDKLEAE 198 (393)
Q Consensus 186 NkLqKrmdkLe~E 198 (393)
..|.||.++|..|
T Consensus 178 ~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 178 EALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHhh
Confidence 3445555555443
No 396
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.37 E-value=1e+02 Score=23.09 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQ 59 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~Lq 59 (393)
++-|+...++|..++..|+.|-+.+++.+..|.
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444444444443
No 397
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=40.26 E-value=2.9e+02 Score=25.11 Aligned_cols=185 Identities=25% Similarity=0.297 Sum_probs=99.1
Q ss_pred cccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhHHHHHHH
Q psy15959 12 SMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEE-FISNTLMKK 90 (393)
Q Consensus 12 s~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEE-fItNtL~KK 90 (393)
|+++....+....--.+..+..++.|...+..+-.-...+-.+-..|-.....+=.. +..=+..|++ -+++.| .+
T Consensus 11 s~~~~~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~---~~~la~~E~~~~l~~~l-~~ 86 (236)
T PF09325_consen 11 SVSNSSPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSS---FSQLAKSEEEKSLSEAL-SQ 86 (236)
T ss_pred HHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcccCCchhHHHH-HH
Confidence 344433334444444577778888888888877766666655555555544444333 3322233333 233333 33
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHH--HHHHHHHHHHHHH---HHHHHHHHhhhhhHH
Q psy15959 91 IQA-LKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQ--EQERVVNKLMRKI---EKLEAETDAKQNNLE 164 (393)
Q Consensus 91 L~~-LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEq--EQE~lVNkL~Kki---ekLeaEk~~~q~~L~ 164 (393)
+-. ..+-+.-+.....++...+...|.-=+.-+...|..|.++... +.+...+.|.++- ++|...-.....++.
T Consensus 87 l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~ 166 (236)
T PF09325_consen 87 LAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVE 166 (236)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence 332 2233333444555666667777776666666666666654332 3334444444443 333222122345566
Q ss_pred HHHHhHhHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 165 QLRREKVELEN---TLEQEQEALVNKLWKRMDKLEAEKR 200 (393)
Q Consensus 165 qLrrEKVeLEn---~LEqEQE~LVNkLqKrmdkLe~EKr 200 (393)
.+..+-.+++. .++.+-+.|...+.+.++....++.
T Consensus 167 ~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~ 205 (236)
T PF09325_consen 167 QAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKV 205 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555554 3456667777777777777776654
No 398
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=40.05 E-value=6.4e+02 Score=29.10 Aligned_cols=73 Identities=25% Similarity=0.376 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHHHH--------HHHHhHHHHHHHHHHH------HHHHHHHHHHHHHh----hhhhHHHHHHhHhH-HHH
Q psy15959 115 DLSRKLNQLTEEKY--------RLEQTIEQEQERVVNK------LMRKIEKLEAETDA----KQNNLEQLRREKVE-LEN 175 (393)
Q Consensus 115 ~L~KKL~qL~~EKv--------~LE~~LEqEQE~lVNk------L~KkiekLeaEk~~----~q~~L~qLrrEKVe-LEn 175 (393)
.|..||+.|+.+-. .=...|.+|...=+.. +.++++.+.++... .-..++.--+|||+ +-+
T Consensus 532 ~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~ 611 (762)
T PLN03229 532 SLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKK 611 (762)
T ss_pred HHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHH
Confidence 45556666655442 1255677777443334 66666666664321 11133333334433 344
Q ss_pred hHHHHHHHHHHH
Q psy15959 176 TLEQEQEALVNK 187 (393)
Q Consensus 176 ~LEqEQE~LVNk 187 (393)
.++.|.+.+||-
T Consensus 612 Ei~~eie~v~~S 623 (762)
T PLN03229 612 EIELELAGVLKS 623 (762)
T ss_pred HHHHHHHHHHhc
Confidence 466666666664
No 399
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=39.91 E-value=4.4e+02 Score=27.12 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 22 PSPVTREQLQKR-IESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKET 100 (393)
Q Consensus 22 ~s~~~~e~~~~r-i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~ 100 (393)
.....++..... |..|+++...++..+..+..+...---....++.....+.....+|---+...+...++.+.+....
T Consensus 274 ~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~ 353 (458)
T COG3206 274 EAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAA 353 (458)
T ss_pred cchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhH--HHHHHHHHHHhHHHHHHHHhHHH
Q psy15959 101 LAHHYEQEEEFLT--NDLSRKLNQLTEEKYRLEQTIEQ 136 (393)
Q Consensus 101 L~~~~EqEEE~LT--N~L~KKL~qL~~EKv~LE~~LEq 136 (393)
|+..+.+-...+. +.++-++.+|.++-......|++
T Consensus 354 L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 354 LEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred HHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
No 400
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=39.86 E-value=5.3e+02 Score=28.05 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQE 60 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~Lqe 60 (393)
++.++-+.+.+|.|+.+.........-
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~ 102 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAET 102 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443333333
No 401
>KOG4797|consensus
Probab=39.82 E-value=64 Score=29.09 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 35 ESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 35 ~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
..+++|..+||..+-.+-.|+..|.+||.-||..
T Consensus 63 fAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 63 FAVREEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577888888877777888888888888888754
No 402
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=39.79 E-value=3.6e+02 Score=26.14 Aligned_cols=102 Identities=11% Similarity=0.191 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy15959 88 MKKIQALKKEKETLAHHYEQEEEFLTNDLSRK-LNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQL 166 (393)
Q Consensus 88 ~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KK-L~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qL 166 (393)
.+++..++++...+...+..|-+-....+..+ =.+..+.+..-...+++|.+..++.|.+++-.+--..
T Consensus 63 e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~---------- 132 (250)
T PRK14474 63 RQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKI---------- 132 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 34556666666666665555554444333222 2334444555567788888888888888876653222
Q ss_pred HHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 167 RREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200 (393)
Q Consensus 167 rrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr 200 (393)
.+|+==...=..-+..+|+++-+++..|-.+-+
T Consensus 133 -A~kiL~~~~d~~~~~~lid~~i~~l~~l~~~~r 165 (250)
T PRK14474 133 -IRAALADLANATLEQQIVGIFIARLEHLSEAER 165 (250)
T ss_pred -HHHHHHhhcCHHHHHHHHHHHHHHhcccCHHHH
Confidence 222211111123356899999999999976643
No 403
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.45 E-value=3.6e+02 Score=26.02 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 88 MKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 88 ~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
...|..+..+++.+...+.- -|---++|.++..+++..-
T Consensus 68 ~~~i~~~~~erdq~~~dL~s-~E~sfsdl~~ryek~K~vi 106 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNS-LEKSFSDLHKRYEKQKEVI 106 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHH-HHhhHHHHHHHHHHHHHHH
Confidence 34456666666666555532 1112236666666555443
No 404
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=39.27 E-value=4.5e+02 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15959 182 EALVNKLWKRMDKLEAEKRILQIKLDQP 209 (393)
Q Consensus 182 E~LVNkLqKrmdkLe~EKr~LQ~~Leq~ 209 (393)
..-+..+..+++.++++....+..|+..
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334555778888888888888888664
No 405
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=39.15 E-value=3.8e+02 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLR 167 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLr 167 (393)
........++.....+++.+.+|.
T Consensus 226 ~~~~~~~~le~~~~~~ee~~~~L~ 249 (297)
T PF02841_consen 226 KQKEQEQMLEQQERSYEEHIKQLK 249 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555555444
No 406
>PRK04406 hypothetical protein; Provisional
Probab=38.79 E-value=2.2e+02 Score=23.30 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
....|-.-|++|+.|.+..+.|-.+|..
T Consensus 30 LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 30 LNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556678888888888887777754
No 407
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=38.71 E-value=3.5e+02 Score=25.66 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~i 72 (393)
+++..++........+...+.....+......++..|..-...|
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~l 48 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLL 48 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555554443333
No 408
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=38.47 E-value=1.7e+02 Score=27.77 Aligned_cols=58 Identities=28% Similarity=0.307 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHhHhHHHHhHHH
Q psy15959 122 QLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETD---AKQNNLEQLRREKVELENTLEQ 179 (393)
Q Consensus 122 qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~---~~q~~L~qLrrEKVeLEn~LEq 179 (393)
|+++|-...-..|.+.-+...+.|...|++|+.+.. ..+.++..||..=..|++.|+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444432 2344555666655566665554
No 409
>PRK00736 hypothetical protein; Provisional
Probab=38.46 E-value=2e+02 Score=22.95 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15959 184 LVNKLWKRMDKLEAEKRILQI 204 (393)
Q Consensus 184 LVNkLqKrmdkLe~EKr~LQ~ 204 (393)
.+.+|++++..|....+..+.
T Consensus 34 ~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 34 TVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334555555555554444443
No 410
>KOG1916|consensus
Probab=38.40 E-value=7.1e+02 Score=29.93 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=35.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHH
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVER 284 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~er 284 (393)
..|-.+|-++++.-..++...+++......+|+.-+..-+-| +-|..|+.|
T Consensus 931 d~~~~rl~e~la~~e~~~r~~~~qi~q~ltq~~s~~~~~~~e-----~ti~~El~~ 981 (1283)
T KOG1916|consen 931 DALWARLQEELAKNEKALRDLQQQITQQLTQFLSKELNAMFE-----KTIKKELAK 981 (1283)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Confidence 355566667888888888888888888899998876654444 334444444
No 411
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.25 E-value=4.4e+02 Score=26.63 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy15959 87 LMKKIQALKK 96 (393)
Q Consensus 87 L~KKL~~Lkk 96 (393)
|.-|+.++..
T Consensus 132 ~IsRvtAi~~ 141 (265)
T COG3883 132 LISRVTAISV 141 (265)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 412
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=38.10 E-value=1.2e+02 Score=29.56 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 179 QEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 179 qEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
|.-|.++|-|.-++-.+.....++..-|.
T Consensus 44 q~~ee~F~~l~~sV~~m~~~i~~~n~fl~ 72 (205)
T PF12238_consen 44 QSDEEKFKSLFDSVPLMKHKISHMNAFLN 72 (205)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55677888888888888887777777776
No 413
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.97 E-value=2.6e+02 Score=23.99 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhH
Q psy15959 135 EQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTL 177 (393)
Q Consensus 135 EqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~L 177 (393)
|.--+.-|+.|..++..|..|...++.+|+-.+.||..|=+.|
T Consensus 44 e~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 44 EARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444555556666666666666666666677776665443
No 414
>PRK02119 hypothetical protein; Provisional
Probab=37.83 E-value=2.2e+02 Score=23.07 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQIK 205 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ~~ 205 (393)
|-..+.+|++++..|....+.++..
T Consensus 35 Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 35 QQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444455666666666555555433
No 415
>KOG0946|consensus
Probab=37.60 E-value=7.5e+02 Score=29.17 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=13.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhH
Q psy15959 103 HHYEQEEEFLTNDLSRKLNQLTE 125 (393)
Q Consensus 103 ~~~EqEEE~LTN~L~KKL~qL~~ 125 (393)
++++.+.++++..|.|+..-...
T Consensus 747 k~l~~~q~~l~~~L~k~~~~~es 769 (970)
T KOG0946|consen 747 KKLENDQELLTKELNKKNADIES 769 (970)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Confidence 34555677777777666544433
No 416
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=37.52 E-value=40 Score=30.20 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q psy15959 184 LVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHD 218 (393)
Q Consensus 184 LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~ 218 (393)
-|.-|.++|.+|.-|.+.|..+|-+.+.+.++|.+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~ 38 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDD 38 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCc
Confidence 36778999999999999999999997774444443
No 417
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.35 E-value=2.4e+02 Score=23.30 Aligned_cols=51 Identities=27% Similarity=0.454 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYK------LQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k------~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
-..+.+...+..|..++..|...+-.+. .-++.|+.-...|-.+...|..+
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~r 68 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHH
Confidence 3446677777777777777765543332 34455555555555554444443
No 418
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=37.18 E-value=5.6e+02 Score=27.54 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=43.6
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHh--HHHHHHHHHHHH
Q psy15959 117 SRKLNQLTEEKYRLEQTIEQEQE------RVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENT--LEQEQEALVNKL 188 (393)
Q Consensus 117 ~KKL~qL~~EKv~LE~~LEqEQE------~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~--LEqEQE~LVNkL 188 (393)
..++..+...-..|-..++.|.. .-..++.+.+..++. ....|..|-..|-.. |-...-..+..+
T Consensus 281 ~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e-------~~~~l~~Ei~~l~~sY~l~~~e~~~~~~l 353 (569)
T PRK04778 281 EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE-------QNKELKEEIDRVKQSYTLNESELESVRQL 353 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHccccCchhHHHHHHH
Confidence 34455555555555555555553 222223333333333 333333333333222 112334457788
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q psy15959 189 WKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 189 qKrmdkLe~EKr~LQ~~Leq 208 (393)
.+++..+......+...+..
T Consensus 354 ekeL~~Le~~~~~~~~~i~~ 373 (569)
T PRK04778 354 EKQLESLEKQYDEITERIAE 373 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 88888888888877777664
No 419
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=37.02 E-value=4.6e+02 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15959 183 ALVNKLWKRMDKLEAEKRILQIKLDQP 209 (393)
Q Consensus 183 ~LVNkLqKrmdkLe~EKr~LQ~~Leq~ 209 (393)
.+++.|..+|.++...+..|-..|..-
T Consensus 154 rv~~el~~K~~~~k~~~e~Ll~~LgeF 180 (268)
T PF11802_consen 154 RVFQELKTKIEKIKEYKEKLLSFLGEF 180 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445888888888888888877777543
No 420
>KOG0288|consensus
Probab=36.96 E-value=5.8e+02 Score=27.72 Aligned_cols=43 Identities=35% Similarity=0.414 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLR-------ALQEENKNLRQTSVN 71 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k-------~LqeEnr~LR~~sv~ 71 (393)
|..++...+..++-.++.+-+..+++.. .||+||.+|+..-|.
T Consensus 24 q~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 24 QCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777778788877777766654 456666666655444
No 421
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.94 E-value=1.6e+02 Score=24.26 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
+..|.+++..++.+...++..|.
T Consensus 76 ~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 76 VKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443
No 422
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.79 E-value=5.5e+02 Score=27.38 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA 74 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~ 74 (393)
.+...+..+.++.+.++.++..++.+...+++++..++.....|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 158 EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 4666777777777777777777777777777777777766555544
No 423
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.73 E-value=1.2e+02 Score=29.37 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15959 50 TYKLQLRALQEENKNLR 66 (393)
Q Consensus 50 ~~k~R~k~LqeEnr~LR 66 (393)
.+-.++..|+.|+..||
T Consensus 58 ~l~~ql~~lq~ev~~Lr 74 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLR 74 (263)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444444
No 424
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.71 E-value=1.8e+02 Score=27.37 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=34.3
Q ss_pred CcCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15959 23 SPVTREQLQKRIESLQQQ---NRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKE 99 (393)
Q Consensus 23 s~~~~e~~~~ri~sLqqe---nr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe 99 (393)
+++|.+++-.=+..+... ...++.|...++..+..|++.|+.|.... ..|.+++..++.+-.
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~---------------~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKEL---------------EKLRQRLSTIEEDYQ 142 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 667777765544444433 22334444444444444555555444443 345555555555555
Q ss_pred HHHHHHH
Q psy15959 100 TLAHHYE 106 (393)
Q Consensus 100 ~L~~~~E 106 (393)
.|..-++
T Consensus 143 ~L~~Im~ 149 (161)
T TIGR02894 143 TLIDIMD 149 (161)
T ss_pred HHHHHHH
Confidence 5544443
No 425
>PRK12704 phosphodiesterase; Provisional
Probab=36.64 E-value=5.8e+02 Score=27.56 Aligned_cols=12 Identities=8% Similarity=0.014 Sum_probs=5.6
Q ss_pred HHHHHHHHhhhh
Q psy15959 283 ERREALCRHLSE 294 (393)
Q Consensus 283 erreal~r~lse 294 (393)
-|+-.+|..++.
T Consensus 341 ~~Va~lA~~lA~ 352 (520)
T PRK12704 341 IEVAHLAGLMAA 352 (520)
T ss_pred HHHHHHHHHHHH
Confidence 344445554443
No 426
>PRK00295 hypothetical protein; Provisional
Probab=36.57 E-value=2.2e+02 Score=22.72 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSP 216 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP 216 (393)
|-..+.+|++++..|....+.++..+..+.-++++|
T Consensus 31 Qq~~I~~L~~ql~~L~~rl~~~~~~~~~~~~e~~PP 66 (68)
T PRK00295 31 QQRVIERLQLQMAALIKRQEEMVGQFGSFEEEAPPP 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcC
Confidence 333445566666666665555554343344445555
No 427
>PRK04406 hypothetical protein; Provisional
Probab=36.38 E-value=2.4e+02 Score=23.07 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQ 203 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ 203 (393)
|-..+.+|++++..|....+.++
T Consensus 37 Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 37 QQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344566666666655554444
No 428
>KOG3990|consensus
Probab=36.33 E-value=3.1e+02 Score=28.05 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHh
Q psy15959 230 THIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREEN 271 (393)
Q Consensus 230 ~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN 271 (393)
--|+.|..||++|+..|..--+.+-+|-.+. .+.++-+|.|
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~ileKdkqi-snLKad~e~~ 265 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLILEKDKQI-SNLKADKEYQ 265 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhh-hccCcchhHH
Confidence 3489999999999999998888777764332 3444434444
No 429
>PF15294 Leu_zip: Leucine zipper
Probab=36.09 E-value=4.8e+02 Score=26.50 Aligned_cols=45 Identities=29% Similarity=0.391 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~i 72 (393)
+=+...|..|++||..||-.+.++..++...-+|...|......+
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447779999999999999888888888887777777666554433
No 430
>PF14992 TMCO5: TMCO5 family
Probab=36.03 E-value=4.9e+02 Score=26.54 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=21.3
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 224 TASNLSTHIHSLRSEVMRLRNQLANTQQ 251 (393)
Q Consensus 224 t~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~ 251 (393)
++.....-++.|..+|+.+.+++.....
T Consensus 110 ~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 110 SLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred ccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444457788899999999998888764
No 431
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=35.86 E-value=99 Score=30.57 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q psy15959 31 QKRIESLQQQNRVLKVELET---YKLQLRALQEENKNLRQT 68 (393)
Q Consensus 31 ~~ri~sLqqenr~lk~ele~---~k~R~k~LqeEnr~LR~~ 68 (393)
.+-...+..+|+.||.+++. ...++..|.+||+.||..
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~l 105 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKEL 105 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888866544 456778888888888865
No 432
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=35.72 E-value=3.8e+02 Score=25.27 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=4.0
Q ss_pred cccccccC
Q psy15959 8 SDSNSMDG 15 (393)
Q Consensus 8 sd~ss~~g 15 (393)
||.|.++.
T Consensus 13 SDDeDie~ 20 (177)
T PF03234_consen 13 SDDEDIEV 20 (177)
T ss_pred cCcccccc
Confidence 55554444
No 433
>KOG1853|consensus
Probab=35.70 E-value=5.1e+02 Score=26.71 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 50 TYKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 50 ~~k~R~k~LqeEnr~LR~~sv~i 72 (393)
.|+.+.-..++|......-+-.|
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~ 46 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREI 46 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Confidence 44555555555555554444433
No 434
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.61 E-value=3.7e+02 Score=25.09 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=2.5
Q ss_pred HHhHhHH
Q psy15959 167 RREKVEL 173 (393)
Q Consensus 167 rrEKVeL 173 (393)
+.+...|
T Consensus 116 ~~~~~~l 122 (188)
T PF03962_consen 116 KKELKEL 122 (188)
T ss_pred HHHHHHH
Confidence 3333333
No 435
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.55 E-value=2.2e+02 Score=22.48 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15959 180 EQEALVNKLWKRMDKLEAEKRILQIKLDQP 209 (393)
Q Consensus 180 EQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~ 209 (393)
+....|-+.|++|+.|+...+.|..+|...
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456689999999999999999999999874
No 436
>PLN02678 seryl-tRNA synthetase
Probab=35.14 E-value=3.5e+02 Score=28.82 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKN 64 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~ 64 (393)
.+|-+|-++-+.+..+++.++.+.+.+..++..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544
No 437
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=35.12 E-value=96 Score=26.05 Aligned_cols=56 Identities=29% Similarity=0.318 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRIL 202 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~L 202 (393)
++.+.|++.+.-...+|.+|..|-+.|.++||. |.=.+|--+.--.++|.+=.+..
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~---EIv~~VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAENL---EIVQMVRSMKMTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHH
Confidence 566666777666677888999999999999993 44445544444444554443333
No 438
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.10 E-value=2.6e+02 Score=23.21 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 142 VNKLMRKIEKLEAETDAKQNNLEQLRREKVELENT--------------LEQEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 142 VNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~--------------LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
.++|+.++..|-.....+...+.....-.-+|+.. ++.-.+.++..|-++++.+..+...+..+++
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~ 87 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEE 87 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHH
Q psy15959 208 QPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQ 250 (393)
Q Consensus 208 q~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q 250 (393)
.|..++..|+..|..+|
T Consensus 88 --------------------------~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 88 --------------------------DLQEKLKELQEKIQQAQ 104 (105)
T ss_pred --------------------------HHHHHHHHHHHHHHHHh
No 439
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.96 E-value=2.6e+02 Score=23.03 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 31 QKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 31 ~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
..+|-.|-++.+.+..+++.++.+-+.+..++..++..
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 34566666777777777777776666666666665544
No 440
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.70 E-value=3e+02 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.440 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
..+.++..+..+. +.++..++.....+..|+.
T Consensus 17 ~~K~~~~~~~~e~-------~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 17 APKAKVDKVKEER-------DNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 3445555554444 4444444444444455544
No 441
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=34.63 E-value=8.5e+02 Score=28.92 Aligned_cols=6 Identities=50% Similarity=1.381 Sum_probs=2.5
Q ss_pred CCCCCC
Q psy15959 384 LGSPMD 389 (393)
Q Consensus 384 ~~~~~~ 389 (393)
.+.||.
T Consensus 752 ~~~~~~ 757 (1021)
T PTZ00266 752 IGNPME 757 (1021)
T ss_pred cCCccc
Confidence 344443
No 442
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=34.61 E-value=4.1e+02 Score=25.31 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy15959 90 KIQALKKEKETLAHHYEQEEEFLTNDLSRK-LNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRR 168 (393)
Q Consensus 90 KL~~LkkEKe~L~~~~EqEEE~LTN~L~KK-L~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrr 168 (393)
++...+++...+...+..+-+-....+..+ -.+..+.+..-...++.|.+..+..|.+++-.+--+ ..
T Consensus 65 ~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~-----------~A 133 (246)
T TIGR03321 65 KNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFA-----------IA 133 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 444455555555444433333322222111 122333344445667777777777777777554222 22
Q ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 169 EKVELENTLEQEQEALVNKLWKRMDKLEAEKRI 201 (393)
Q Consensus 169 EKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~ 201 (393)
+|+--+..=..-+..||++..++++.|-.+.+.
T Consensus 134 ~kil~~~~d~~~~~~lid~~i~~l~~l~~~~~~ 166 (246)
T TIGR03321 134 RKVLTDLADTDLEERMVDVFVQRLRTLDPDEKA 166 (246)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHhhcCCHHHHH
Confidence 333222222345678999999999999777554
No 443
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.49 E-value=87 Score=26.80 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15959 41 NRVLKVELETYKLQLRALQEENKNLRQTSVNIQ 73 (393)
Q Consensus 41 nr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq 73 (393)
...++.+++..+.++..++++|..|+..-..++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555666666666666666665544443
No 444
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=34.40 E-value=5.6e+02 Score=26.73 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=15.9
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 118 RKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 118 KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
.+|.+.+..-..|..+|.+-....++....++..+
T Consensus 300 ~~L~~~~qrLd~L~~RL~~a~~~~L~~k~~rL~~L 334 (432)
T TIGR00237 300 NKLALQQLQFEKLEKRKQAALNKQLERTRQKKTRL 334 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455444444444444444443
No 445
>PRK02119 hypothetical protein; Provisional
Probab=34.28 E-value=2.5e+02 Score=22.72 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15959 179 QEQEALVNKLWKRMDKLEAEKRILQIKLDQP 209 (393)
Q Consensus 179 qEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~ 209 (393)
.+....|-+-|++|+.|.+..+.|..+|...
T Consensus 26 e~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 26 EELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566789999999999999999999998664
No 446
>KOG1830|consensus
Probab=34.12 E-value=1.1e+02 Score=33.08 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=31.7
Q ss_pred HHHHHhHH----HHHHHHHHHhHHHHHHHHhHHHHHH---HHHHHHHHHHHHH
Q psy15959 107 QEEEFLTN----DLSRKLNQLTEEKYRLEQTIEQEQE---RVVNKLMRKIEKL 152 (393)
Q Consensus 107 qEEE~LTN----~L~KKL~qL~~EKv~LE~~LEqEQE---~lVNkL~KkiekL 152 (393)
-|-||+|| .+.|.|.-|-+--+++=..|-.+-. .=+|.|+.+||+|
T Consensus 24 ~ELecvtN~TLaniIRQLsSLSKhAEdIFGELf~da~~f~~R~NSLQ~RIDRL 76 (518)
T KOG1830|consen 24 SELECVTNITLANIIRQLSSLSKHAEDIFGELFNDANNFNHRANSLQERIDRL 76 (518)
T ss_pred cceeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 35577777 3567777777777777777766663 4577778877776
No 447
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=33.99 E-value=9.6e+02 Score=29.34 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 231 HIHSLRSEVMRLRNQLANTQQEHTEKMER 259 (393)
Q Consensus 231 ~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~ 259 (393)
-.+.+|.++..|+.-|..-|...-+ |.+
T Consensus 1299 ~a~Kqk~di~kl~~~lv~kQKAYP~-M~Q 1326 (1439)
T PF12252_consen 1299 TAQKQKEDIVKLNDFLVEKQKAYPA-MVQ 1326 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchH-HHH
Confidence 3577889999999999888754433 443
No 448
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.98 E-value=3.7e+02 Score=27.96 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENKN 64 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~ 64 (393)
+|-+|-++-+.+..+++.++.+.+.+..++..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554444443
No 449
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=33.92 E-value=2.9e+02 Score=23.28 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQE 60 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~Lqe 60 (393)
+++..+++.++.+....+..++.+......|.+
T Consensus 36 ~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~ 68 (213)
T cd00176 36 EALLKKHEALEAELAAHEERVEALNELGEQLIE 68 (213)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence 344444444544444444444444444444433
No 450
>KOG0432|consensus
Probab=33.85 E-value=41 Score=38.89 Aligned_cols=59 Identities=20% Similarity=0.416 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC--CCCccchhHhHHHHHHHHHHHH
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNN--GDTASNLSTHIHSLRSEVMRLR 243 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~--~dt~~~l~~~i~~Lr~Ev~~Lr 243 (393)
+-||+|++++|..++..++.++....-....|-.+-. -.-..++.+||+.|..++.+|+
T Consensus 932 ~~kl~kkl~klqk~~~~l~~r~~~~~~~~k~p~~v~~~~~~Kl~~~~~ei~~~~~~~~~l~ 992 (995)
T KOG0432|consen 932 IQKLAKKLEKLQKQLDKLQARISSSDYQEKAPLEVKEKNKEKLKELEAEIENLKAALANLK 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567888999999999999999776666666665431 1123445566666666655554
No 451
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.74 E-value=1.7e+02 Score=24.89 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=12.8
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHH
Q psy15959 226 SNLSTHIHSLRSEVMRLRNQLANT 249 (393)
Q Consensus 226 ~~l~~~i~~Lr~Ev~~Lr~~l~~~ 249 (393)
..|..-|..+++++..+..++...
T Consensus 68 ~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 68 HDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344455555555555555555444
No 452
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=33.44 E-value=3.9e+02 Score=24.61 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LE 135 (393)
..+.+-+..+...+..|+..++
T Consensus 40 ~~a~~~~a~~~a~~~~le~~~~ 61 (221)
T PF04012_consen 40 RKARQALARVMANQKRLERKLD 61 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 453
>KOG1962|consensus
Probab=33.15 E-value=4.8e+02 Score=25.62 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=5.9
Q ss_pred hHHHHHHhHhHHHH
Q psy15959 162 NLEQLRREKVELEN 175 (393)
Q Consensus 162 ~L~qLrrEKVeLEn 175 (393)
+-|+|-.|--.|.+
T Consensus 194 EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 194 EYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 454
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=32.97 E-value=2.6e+02 Score=22.43 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=55.5
Q ss_pred CCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH---HHHHhHHHHHHHHHHHHHHHHHHHh
Q psy15959 223 DTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKN---VREENLRLQRKLQREVERREALCRH 291 (393)
Q Consensus 223 dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~---~reeN~rl~~kl~~E~erreal~r~ 291 (393)
++-++|..+|++.=+++..|-.+......+...++..|...-.. -.++...+...|+..+.+...++..
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~de 79 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDE 79 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999998999999999999999999999999877654 3346667778888888888877754
No 455
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=32.93 E-value=2.3e+02 Score=21.95 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q psy15959 144 KLMRKIEKLEAETDA 158 (393)
Q Consensus 144 kL~KkiekLeaEk~~ 158 (393)
+|.+++++++.+...
T Consensus 8 rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 8 RLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555444433
No 456
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.83 E-value=3.8e+02 Score=24.38 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15959 51 YKLQLRALQEENKNLRQ 67 (393)
Q Consensus 51 ~k~R~k~LqeEnr~LR~ 67 (393)
.|.++..+.++...++.
T Consensus 18 ~K~~~~~~~~e~~~~k~ 34 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKT 34 (155)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 457
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=32.74 E-value=3.2e+02 Score=23.51 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=53.0
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 23 SPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAK-AEQEEEFISNTLMKKIQALKKEKETL 101 (393)
Q Consensus 23 s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~k-aEqEEEfItNtL~KKL~~LkkEKe~L 101 (393)
.-|+.+.+.......+.....++...+.....+..++.+...+......-... -+.+-.=....|.++...|++....+
T Consensus 20 a~Vd~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~ 99 (158)
T PF03938_consen 20 AVVDVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQA 99 (158)
T ss_dssp EEE-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666555555555555555555544321110000 00000111235566666666666666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHh
Q psy15959 102 AHHYEQEEEFLTNDLSRKLNQLT 124 (393)
Q Consensus 102 ~~~~EqEEE~LTN~L~KKL~qL~ 124 (393)
...+++++.-+.+.+..++...-
T Consensus 100 ~~~l~~~~~~~~~~i~~~i~~~v 122 (158)
T PF03938_consen 100 QQQLQQEEQELLQPIQKKINKAV 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66676666666666666665443
No 458
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.72 E-value=1.6e+02 Score=30.18 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=7.4
Q ss_pred cCCCCcCCHHHHHHHH
Q psy15959 19 MMPPSPVTREQLQKRI 34 (393)
Q Consensus 19 ~~p~s~~~~e~~~~ri 34 (393)
.++.+.++.+++.+..
T Consensus 155 v~dL~~~~~e~ll~~~ 170 (406)
T PF02388_consen 155 VKDLTGFSEEELLKSF 170 (406)
T ss_dssp EEEGCC-TCHHCHHCS
T ss_pred EEECCCCCHHHHHHHh
Confidence 3444555556555433
No 459
>PF14282 FlxA: FlxA-like protein
Probab=32.54 E-value=3.1e+02 Score=23.31 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=10.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 230 THIHSLRSEVMRLRNQLANTQQEH 253 (393)
Q Consensus 230 ~~i~~Lr~Ev~~Lr~~l~~~q~e~ 253 (393)
.-++-|-.++.-|..+|...+.+.
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 460
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.23 E-value=2.9e+02 Score=22.79 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=15.4
Q ss_pred HHHhHHHHhHHHHHhHHHHHHHH
Q psy15959 257 MERYVKDEKNVREENLRLQRKLQ 279 (393)
Q Consensus 257 ~~~~~~ee~~~reeN~rl~~kl~ 279 (393)
+...-..+..+.++|-.|+.++.
T Consensus 77 i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 77 IEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334456777788888888764
No 461
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=32.18 E-value=2.1e+02 Score=29.54 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=7.9
Q ss_pred HHHHHHHHhHHHHH-HHHH
Q psy15959 125 EEKYRLEQTIEQEQ-ERVV 142 (393)
Q Consensus 125 ~EKv~LE~~LEqEQ-E~lV 142 (393)
+-|.+|...|.++| ++|+
T Consensus 363 ~~k~~L~~~L~~~q~~yLL 381 (426)
T PF00521_consen 363 KAKKDLIEELSEEQADYLL 381 (426)
T ss_dssp HHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHH
Confidence 33444444444444 4444
No 462
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=32.12 E-value=4.8e+02 Score=25.26 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 187 KLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEK 256 (393)
Q Consensus 187 kLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k 256 (393)
.|+.+++.++.+...++..+..-.......+....|.........+.....++..+++++...+......
T Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 215 (301)
T PF14362_consen 146 ALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQ 215 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3444444444444444444332221111111122233444455566666666666666666555555533
No 463
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=32.01 E-value=1.8e+02 Score=25.24 Aligned_cols=8 Identities=38% Similarity=0.763 Sum_probs=4.7
Q ss_pred HHHHHhHH
Q psy15959 78 QEEEFISN 85 (393)
Q Consensus 78 qEEEfItN 85 (393)
+|+.||-+
T Consensus 61 ~E~~Y~r~ 68 (100)
T PF04568_consen 61 QEEQYFRK 68 (100)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 46667643
No 464
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=31.73 E-value=6.3e+02 Score=26.55 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
|+.||.+|-.|+.. +...||||+.|-.
T Consensus 2 Vdd~QN~N~EL~kQ-------iEIcqEENkiLdK 28 (351)
T PF07058_consen 2 VDDVQNQNQELMKQ-------IEICQEENKILDK 28 (351)
T ss_pred chhhhhhcHHHHHH-------HHHHHHHHHHHHH
Confidence 46788888776654 4455667766643
No 465
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.40 E-value=1.2e+02 Score=23.05 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=24.8
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 23 SPVTREQLQKRIESLQQQNRVLKVELETYKLQLRAL 58 (393)
Q Consensus 23 s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~L 58 (393)
+-+.+-++...+..|+.++..++.+.+.++..++.|
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666777777777777777777777777777
No 466
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=31.04 E-value=4.5e+02 Score=24.65 Aligned_cols=128 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQ-QNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALK-KEKETLAHHYE 106 (393)
Q Consensus 29 ~~~~ri~sLqq-enr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~Lk-kEKe~L~~~~E 106 (393)
+|+..|..|.. -+..-+.-+.....++..|+.||+.||.+...-+...|- |-.+..+-+..|. ..+......|-
T Consensus 45 ~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~alel----IM~KyReq~~~l~~~~k~~~~~~~~ 120 (181)
T PF05769_consen 45 QYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQSALEL----IMSKYREQMSQLMMASKFDDTEPYL 120 (181)
T ss_pred HHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhHHH
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy15959 107 QEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ---ERVVNKLMRKIEKLEAETDAKQNNLE 164 (393)
Q Consensus 107 qEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQ---E~lVNkL~KkiekLeaEk~~~q~~L~ 164 (393)
. +...+.+.+.....--+++..-+..-. +.-..+.+..|-+|+.|...+.+-|.
T Consensus 121 ~----~~~~~~~~~~~~~~kI~EM~~vM~~ai~~de~~~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 121 E----ANEQLSKEVQSQAEKICEMAAVMRKAIELDEENSQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred H----HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhHhHHHHHHHHHHHHHHHHHHHh
No 467
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=31.00 E-value=4e+02 Score=23.98 Aligned_cols=96 Identities=18% Similarity=0.289 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy15959 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRK-LNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQ 165 (393)
Q Consensus 87 L~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KK-L~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~q 165 (393)
..++|...+++...+...+..+-+-+.+.+... -.++.+.+..-...++.|.+.....|.+++-.+--+
T Consensus 76 ~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~---------- 145 (174)
T PRK07352 76 AQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIA---------- 145 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 334555555555555554444333333222211 122333334445566777777777777776554322
Q ss_pred HHHhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 166 LRREKVELENTLEQEQEALVNKLWKRMD 193 (393)
Q Consensus 166 LrrEKVeLEn~LEqEQE~LVNkLqKrmd 193 (393)
..+|+-.++-=...+..||+++.++|+
T Consensus 146 -~A~kil~~~l~~~~~~~li~~~i~~l~ 172 (174)
T PRK07352 146 -KAESQLPGRLDEDAQQRLIDRSIANLG 172 (174)
T ss_pred -HHHHHHHhHcCHHHHHHHHHHHHHhhc
Confidence 233332222223445677777777664
No 468
>KOG4466|consensus
Probab=30.54 E-value=6.2e+02 Score=26.08 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy15959 139 ERVVNKLMRKIEKLEAETDA 158 (393)
Q Consensus 139 E~lVNkL~KkiekLeaEk~~ 158 (393)
|.|...|..++.+|+.++.+
T Consensus 115 e~l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 115 ENLISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566666777777766643
No 469
>KOG4787|consensus
Probab=30.50 E-value=8.8e+02 Score=27.84 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=59.5
Q ss_pred hhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHH
Q psy15959 160 QNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEV 239 (393)
Q Consensus 160 q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev 239 (393)
..+|-.++++-.++-.+.--+-=+-|--|++++++....=|.|+.+|.-. +- +....+.+......-|..|-.|+
T Consensus 436 ~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~--~R---~q~R~~~~~~~d~~kIK~LE~e~ 510 (852)
T KOG4787|consen 436 TTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKL--HR---KQVRDGEIQYSDELKIKILELEK 510 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHH--HH---HHHhhhhhccchHHHHHHHHHHH
Confidence 34666777888888888888888888899999999999999999998631 11 11223445555666677765555
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15959 240 MRLRNQLANTQQEHTE 255 (393)
Q Consensus 240 ~~Lr~~l~~~q~e~~~ 255 (393)
.--+.--..++.|...
T Consensus 511 R~S~~Ls~~L~~ElE~ 526 (852)
T KOG4787|consen 511 RLSEKLAIDLVSELEG 526 (852)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333344444433
No 470
>KOG0240|consensus
Probab=30.46 E-value=8.3e+02 Score=27.53 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhH
Q psy15959 245 QLANTQQEHTEKMERYVKDEKN 266 (393)
Q Consensus 245 ~l~~~q~e~~~k~~~~~~ee~~ 266 (393)
++..++.+.+.+|.++..+++.
T Consensus 562 q~e~~~~~~~~~~~~~~~~~~~ 583 (607)
T KOG0240|consen 562 QLEVLQSESNTKMEQEEKELRP 583 (607)
T ss_pred ehhhhhhHHHHHHHHHHHhhHH
Confidence 7888888888888888777665
No 471
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.41 E-value=2.8e+02 Score=28.41 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKY 128 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv 128 (393)
+.|..+|.++.++...|..++++-. +..+|+.++.+...
T Consensus 245 ~~l~~~~~~~~~~i~~l~~~l~~~~-----k~~~k~~~~~~q~~ 283 (406)
T PF02388_consen 245 ESLQEKLEKLEKEIEKLEEKLEKNP-----KKKNKLKELEEQLA 283 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-----chhhHHHHHHHHHH
Confidence 4556666666666666666655422 33444444444443
No 472
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.27 E-value=1.2e+02 Score=24.17 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=24.8
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 224 TASNLSTHIHSLRSEVMRLRNQLANTQQEH 253 (393)
Q Consensus 224 t~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~ 253 (393)
+.+.|...|..|+.||.|++..+..-..-.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999887655433
No 473
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=30.11 E-value=91 Score=24.34 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy15959 52 KLQLRALQEENKNLRQT 68 (393)
Q Consensus 52 k~R~k~LqeEnr~LR~~ 68 (393)
+.++..|..||+.||..
T Consensus 28 ~~rl~~l~~EN~~Lr~e 44 (52)
T PF12808_consen 28 RKRLSKLEGENRLLRAE 44 (52)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 474
>KOG4196|consensus
Probab=30.11 E-value=4.5e+02 Score=24.35 Aligned_cols=94 Identities=21% Similarity=0.306 Sum_probs=53.6
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15959 23 SPVTREQLQKRIESLQQQNRVLK----VELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEK 98 (393)
Q Consensus 23 s~~~~e~~~~ri~sLqqenr~lk----~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEK 98 (393)
.-++.|+|.. =|+.+-|+.|+ .|+-.+| +--+.|+.--+...|++-.- .. -..|.++|
T Consensus 22 d~lsDd~Lvs--mSVReLNr~LrG~~reEVvrlK-------QrRRTLKNRGYA~sCR~KRv--------~Q-k~eLE~~k 83 (135)
T KOG4196|consen 22 DRLSDDELVS--MSVRELNRHLRGLSREEVVRLK-------QRRRTLKNRGYAQSCRVKRV--------QQ-KHELEKEK 83 (135)
T ss_pred CCcCHHHHHH--hhHHHHHHHhcCCCHHHHHHHH-------HHHHHHhhhhHHHHHHHHHH--------HH-HHHHHHHH
Confidence 4577777765 25566666665 3333333 33455555545444532110 00 03366666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Q psy15959 99 ETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVV 142 (393)
Q Consensus 99 e~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lV 142 (393)
..|..++++ |...+.+++.|...+...+++=+.+.|
T Consensus 84 ~~L~qqv~~--------L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 84 AELQQQVEK--------LKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 666666654 566677788888877777777666654
No 475
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=30.10 E-value=3.9e+02 Score=23.57 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENKN 64 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~ 64 (393)
...-|..+|.+||..+-.+..+...|.++++.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ 37 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKE 37 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777777666666666666665543
No 476
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.88 E-value=1.2e+02 Score=25.97 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy15959 41 NRVLKVELETYKLQLRALQEENKNLRQTSVN 71 (393)
Q Consensus 41 nr~lk~ele~~k~R~k~LqeEnr~LR~~sv~ 71 (393)
...|-..+..+..++..++.++..++....+
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~ 105 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQKLKK 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666666655433
No 477
>PRK00736 hypothetical protein; Provisional
Probab=29.77 E-value=2.9e+02 Score=22.04 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15959 180 EQEALVNKLWKRMDKLEAEKRILQIKLDQP 209 (393)
Q Consensus 180 EQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~ 209 (393)
+....|-+-|++|+.|....+.|-.+|...
T Consensus 23 ~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 23 ELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667778999999999999998888753
No 478
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=29.75 E-value=5.3e+02 Score=25.03 Aligned_cols=72 Identities=11% Similarity=0.238 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMD 193 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmd 193 (393)
..-.++|...+.+...+-.....|-+.+...+..+- +.+.+ +.+..-...+++|.+..++.|.+++.
T Consensus 60 ~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A----------~~ea~---~~~~~a~~~ie~Ek~~a~~~L~~~v~ 126 (250)
T PRK14474 60 ERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEA----------REDVA---TARDEWLEQLEREKQEFFKALQQQTG 126 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566665555554444444443333332221 12223 33344556788888888888888888
Q ss_pred HHHHH
Q psy15959 194 KLEAE 198 (393)
Q Consensus 194 kLe~E 198 (393)
.+--.
T Consensus 127 ~la~~ 131 (250)
T PRK14474 127 QQMVK 131 (250)
T ss_pred HHHHH
Confidence 87744
No 479
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.52 E-value=1.5e+02 Score=23.15 Aligned_cols=40 Identities=30% Similarity=0.447 Sum_probs=21.4
Q ss_pred HHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHH
Q psy15959 128 YRLEQTIEQEQERVV---NKLMRKIEKLEAETDAKQNNLEQLR 167 (393)
Q Consensus 128 v~LE~~LEqEQE~lV---NkL~KkiekLeaEk~~~q~~L~qLr 167 (393)
.+|++.+..|.|.=. +-..++|.+|++|...+..+|..++
T Consensus 7 ~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 7 EELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666665332 2335555666555555555554443
No 480
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=29.52 E-value=4.4e+02 Score=24.06 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEA 154 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLea 154 (393)
..|...-.....++.+....+.+....+-+.-.+++++|..
T Consensus 96 ~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e 136 (145)
T PF14942_consen 96 DYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKE 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555554444444444444444433
No 481
>KOG4797|consensus
Probab=29.35 E-value=1.1e+02 Score=27.64 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 44 LKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 44 lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
.|.|.+.+|.+++.|.+-|..|+..
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887655
No 482
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.29 E-value=3.5e+02 Score=27.09 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy15959 142 VNKLMRKIEKLEAETDAKQNNLEQLR 167 (393)
Q Consensus 142 VNkL~KkiekLeaEk~~~q~~L~qLr 167 (393)
++.++++..+|.+|...++..++..+
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445554444444444455555544
No 483
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=29.27 E-value=2.3e+02 Score=25.73 Aligned_cols=49 Identities=33% Similarity=0.563 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 136 QEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 136 qEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
+|+-.++...+.-+.+|+++...+..+++.|| ++++.+....+.|..+|
T Consensus 83 ~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr----------------------~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 83 QEQQSLIKTYEIVVKKLEAELRAKDSEIDRLR----------------------EKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHhhccC
No 484
>PLN02678 seryl-tRNA synthetase
Probab=29.16 E-value=3.1e+02 Score=29.17 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
+|..+++.|+++.....+.+.++.+.+.+.+ +.-.-+..|.+++..|+.+...++.+|..
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~-----~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDAT-----ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655555555444443222 22223567888888888888888888765
No 485
>KOG3119|consensus
Probab=29.01 E-value=1.4e+02 Score=29.31 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQ 73 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq 73 (393)
.++++..-..-|+.......|+..|..||..||...+.+.
T Consensus 203 N~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~ 242 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLK 242 (269)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666556666778889999999999999988766554
No 486
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=28.23 E-value=6.6e+02 Score=25.65 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 24 PVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAH 103 (393)
Q Consensus 24 ~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~ 103 (393)
.++.|+++.+|..|.-+..+|+ =.+|..-.+.-.+|+..+ |..++...|.-||+.|++.+
T Consensus 8 ~~~eed~rL~v~~LhHQvlTLq--------------cQLRDQ~~ahreLQas~d-Ea~~L~~~L~~kl~eLqkk~----- 67 (277)
T PF15030_consen 8 EASEEDLRLRVQQLHHQVLTLQ--------------CQLRDQGSAHRELQASRD-EATRLQDELQGKLEELQKKQ----- 67 (277)
T ss_pred cccchhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh-----
Confidence 4455677766666555544444 333443344444555433 36667777777777776643
Q ss_pred HHHHHHHHhHHHHHHHHHHHh
Q psy15959 104 HYEQEEEFLTNDLSRKLNQLT 124 (393)
Q Consensus 104 ~~EqEEE~LTN~L~KKL~qL~ 124 (393)
.|-.+-+--|..||.-|-
T Consensus 68 ---~Ea~lAVtPLKak~AslV 85 (277)
T PF15030_consen 68 ---HEANLAVTPLKAKLASLV 85 (277)
T ss_pred ---hhHhhccchHHHHHHHHH
Confidence 233334445555554443
No 487
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.19 E-value=3.1e+02 Score=21.93 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=13.6
Q ss_pred hhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 160 QNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKL 195 (393)
Q Consensus 160 q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkL 195 (393)
..+|..++++-..+.+ .+++|++|+++|
T Consensus 63 ~~KL~~ikkrm~~l~~--------~l~~lk~R~~~L 90 (92)
T PF14712_consen 63 VKKLVNIKKRMSNLHE--------RLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHhh
Confidence 3444555554444433 344555555554
No 488
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.03 E-value=3e+02 Score=27.59 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLE 178 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LE 178 (393)
..+.++.+++.....++.+++...++|..|+..++
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~ 273 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIE 273 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555655555566666666666666665443
No 489
>KOG3771|consensus
Probab=27.61 E-value=8.3e+02 Score=26.64 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~E 106 (393)
+||--.++..++.+-+.|-.++..|-..++++..--..|+.....|..-...=.+|+ +......+.|.++.+. .+
T Consensus 32 FE~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g~~~l-~~v~~~~d~l~~d~~~---~l- 106 (460)
T KOG3771|consen 32 FEQEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPGRDYL-QAVADNDDLLWKDLDQ---KL- 106 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHH-HHHHHHHHHHHHHHHH---HH-
Confidence 688889999999999999999999999999999999999888776665555555555 4455555556655542 11
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHH
Q psy15959 107 QEEEFLTNDLSRKLNQLTEEKYR 129 (393)
Q Consensus 107 qEEE~LTN~L~KKL~qL~~EKv~ 129 (393)
.+.+.+.|.+.+.+...-|..
T Consensus 107 --~d~vl~pl~~~~~~fpdik~~ 127 (460)
T KOG3771|consen 107 --VDQVLLPLDTYLGQFPDIKKA 127 (460)
T ss_pred --HHhhhhhHHHhhhhchhHHHH
Confidence 334556666555555444433
No 490
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.53 E-value=9.7e+02 Score=27.39 Aligned_cols=70 Identities=27% Similarity=0.320 Sum_probs=51.9
Q ss_pred hHHHHHHHHhHHHHH-----HHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 124 TEEKYRLEQTIEQEQ-----ERV-VNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDK 194 (393)
Q Consensus 124 ~~EKv~LE~~LEqEQ-----E~l-VNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdk 194 (393)
..-|+.||.-+-+|- |+- ---+.|++..|+.|+...+++++.|-.|--.+|..| --...+|+.++--|.+
T Consensus 423 ~~sk~~le~~~v~~~~~~VQe~~~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l-~~~~~~vke~nq~l~~ 498 (758)
T COG4694 423 KSSKEQLEKFLVNEFKSDVQEYNKYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFL-VSIKPIVKEINQTLLK 498 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHh
Confidence 345666666665432 332 345789999999999999999999999999999988 5556778877755543
No 491
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.46 E-value=7.1e+02 Score=25.79 Aligned_cols=110 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 24 PVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAH 103 (393)
Q Consensus 24 ~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~ 103 (393)
+.++-+|.+=-..+......+...-..+..+...|.++-+.++.....++.++.+=-+.+ +.+...|..+..+.+.+..
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V-~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGV-SERTRELAEISEELEQVKQ 315 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHH-----HHHHHHHHHhHHHHHHHHhH
Q psy15959 104 HYEQEEEFLTN-----DLSRKLNQLTEEKYRLEQTI 134 (393)
Q Consensus 104 ~~EqEEE~LTN-----~L~KKL~qL~~EKv~LE~~L 134 (393)
.++.-.-.+|+ .+..-|.+|+.|-.+|.-+.
T Consensus 316 emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 316 EMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
No 492
>PF14645 Chibby: Chibby family
Probab=27.10 E-value=1.7e+02 Score=25.67 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELE 49 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele 49 (393)
..++.++..|++||+-||.+.+
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777776543
No 493
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.06 E-value=1.7e+02 Score=23.92 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 24 PVTREQLQKRIESLQQQNRVLKVELETYKLQ 54 (393)
Q Consensus 24 ~~~~e~~~~ri~sLqqenr~lk~ele~~k~R 54 (393)
.-|-++....|++|+++++..+.-|..++.+
T Consensus 51 ~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 51 DRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666665555555555444
No 494
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=26.93 E-value=1.6e+02 Score=25.61 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy15959 232 IHSLRSEVMRLRNQLANTQQEHTEKMERYVKD 263 (393)
Q Consensus 232 i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~e 263 (393)
+..|+.|+.+|+.+|........+++..|+..
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlK 35 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALK 35 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.90 E-value=3.7e+02 Score=27.98 Aligned_cols=60 Identities=30% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 148 KIEKLEAETDAKQNNLEQLRREKVELENTLEQ---------EQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 148 kiekLeaEk~~~q~~L~qLrrEKVeLEn~LEq---------EQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
+|-+|..+.+.++.+++.||+++-.+-..+-. +.-.-+..|.+++..|+.+...++.++.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.62 E-value=7.1e+02 Score=25.51 Aligned_cols=128 Identities=19% Similarity=0.335 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 26 TREQLQKRIESLQQQN-RVLKVELETYKLQLRALQEEN--KNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLA 102 (393)
Q Consensus 26 ~~e~~~~ri~sLqqen-r~lk~ele~~k~R~k~LqeEn--r~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~ 102 (393)
.+.++..+++.+.... +.++..+...+.+...|..-. ............+..+=..-|...+..+|..-++....+.
T Consensus 261 ~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~ 340 (438)
T PRK00286 261 DRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLS 340 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 103 HHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAK 159 (393)
Q Consensus 103 ~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~ 159 (393)
.+++ ...-.+.|.+.+..-..|..+|.+-....+.....+++.+.....++
T Consensus 341 ~rL~------~lsP~~~L~r~~qrL~~L~~rL~~a~~~~L~~~~~rL~~l~~rL~~l 391 (438)
T PRK00286 341 QRLQ------QQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQLEAL 391 (438)
T ss_pred HHHh------hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 497
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=26.57 E-value=4.8e+02 Score=23.52 Aligned_cols=116 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHh
Q psy15959 55 LRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKE-KETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQT 133 (393)
Q Consensus 55 ~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkE-Ke~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~ 133 (393)
...+.+=-+++=-+-+...+++.+|-.-+.+.|.++=..+.+. +..+...++.=.+-+.+....--.++......||+.
T Consensus 12 ~~~~~~~arqIWLAGLGA~ak~~~EG~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~ 91 (132)
T PF05597_consen 12 SSDVRDSARQIWLAGLGAYAKAQEEGSKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVKSRVDDVKERATGQWDKLEQA 91 (132)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhhhhhHHHHHHhH
Q psy15959 134 IEQEQERVVNKL----MRKIEKLEAETDAKQNNLEQLRREK 170 (393)
Q Consensus 134 LEqEQE~lVNkL----~KkiekLeaEk~~~q~~L~qLrrEK 170 (393)
.+.--...+|+| .+.|+.|.+....+...+++|.+.|
T Consensus 92 fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 92 FDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
No 498
>KOG1937|consensus
Probab=26.46 E-value=9.1e+02 Score=26.68 Aligned_cols=160 Identities=26% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLT 113 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LT 113 (393)
+.+.+.+.-|.=.++++-..+......|...+-.....+-.-.--=+.|+ .+|+-+|..+++...+|..+.+. .-
T Consensus 246 l~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayL-aKL~~~l~~~~~~~~~ltqqwed----~R 320 (521)
T KOG1937|consen 246 LQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYL-AKLMGKLAELNKQMEELTQQWED----TR 320 (521)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHH-HHHHHHHHHHHHHHHHHHHHHHH----Hh
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHH--------------
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQ-------------- 179 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEq-------------- 179 (393)
-.|..|..+|+.++..+|-.-+ . -.+|.+|+.+..++-++...=-..-..|.+.|+.
T Consensus 321 ~pll~kkl~Lr~~l~~~e~e~~--------e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqri 391 (521)
T KOG1937|consen 321 QPLLQKKLQLREELKNLETEDE--------E-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRI 391 (521)
T ss_pred hhHHHHHHHHHHHHhcccchHH--------H-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 180 -EQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 180 -EQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
|.-.-+-|+---|-++-.|.|.||..++
T Consensus 392 kEi~gniRKq~~DI~Kil~etreLqkq~n 420 (521)
T KOG1937|consen 392 KEIDGNIRKQEQDIVKILEETRELQKQEN 420 (521)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.33 E-value=3.5e+02 Score=21.82 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q psy15959 143 NKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHD 218 (393)
Q Consensus 143 NkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~ 218 (393)
..+..+|..| ..|+-.-...=.+....|-+-|++|+.|.+..+.|-.+|....++...|..
T Consensus 4 ~~~e~Ri~~L---------------E~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~~~~~~ 64 (72)
T PRK02793 4 SSLEARLAEL---------------ESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSNIASQA 64 (72)
T ss_pred hhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
No 500
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.28 E-value=3.4e+02 Score=24.60 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERY 260 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~ 260 (393)
++.-++..+|..|...+.+.+.. ++..|.=.... +|++.++.|..+|..+.++...+...|
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~----------iS~qDeFAkwa----Kl~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA----------ISAQDEFAKWA----KLNRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT----------S-TTTSHHHHH----HHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHc----------CCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!