Query psy15959
Match_columns 393
No_of_seqs 90 out of 92
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 17:25:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.9 3E-05 1E-09 84.6 10.7 50 85-135 916-965 (1184)
2 1c1g_A Tropomyosin; contractIl 97.9 0.0081 2.8E-07 50.6 37.3 37 29-65 3-39 (284)
3 1i84_S Smooth muscle myosin he 97.6 7.6E-05 2.6E-09 81.5 7.9 32 31-62 863-894 (1184)
4 1c1g_A Tropomyosin; contractIl 97.6 0.028 9.7E-07 47.3 38.2 40 28-67 16-55 (284)
5 2dfs_A Myosin-5A; myosin-V, in 97.5 0.0042 1.4E-07 68.2 18.9 140 37-192 919-1061(1080)
6 2dfs_A Myosin-5A; myosin-V, in 97.4 0.052 1.8E-06 59.7 25.9 55 187-256 995-1049(1080)
7 3na7_A HP0958; flagellar bioge 96.8 0.3 1E-05 44.8 25.4 148 40-207 19-174 (256)
8 3na7_A HP0958; flagellar bioge 96.6 0.46 1.6E-05 43.6 21.2 58 144-201 129-186 (256)
9 2v71_A Nuclear distribution pr 96.5 0.48 1.6E-05 43.4 20.0 117 85-207 59-178 (189)
10 3oja_B Anopheles plasmodium-re 96.5 0.11 3.8E-06 51.1 16.9 61 147-208 523-583 (597)
11 2v71_A Nuclear distribution pr 96.0 0.91 3.1E-05 41.6 21.5 98 137-251 85-182 (189)
12 2v66_B Nuclear distribution pr 95.9 0.7 2.4E-05 39.3 16.8 88 32-138 3-90 (111)
13 3u59_A Tropomyosin beta chain; 95.4 0.54 1.8E-05 38.2 13.8 95 85-196 5-99 (101)
14 3u1c_A Tropomyosin alpha-1 cha 95.4 0.65 2.2E-05 38.0 14.3 95 85-196 5-99 (101)
15 3vkg_A Dynein heavy chain, cyt 95.1 7.5 0.00026 47.9 27.4 21 230-250 2077-2097(3245)
16 3o0z_A RHO-associated protein 94.9 2.1 7.2E-05 38.7 20.6 45 145-189 109-153 (168)
17 3o0z_A RHO-associated protein 94.9 2.1 7.3E-05 38.7 19.7 25 227-251 94-118 (168)
18 2fxo_A Myosin heavy chain, car 94.6 1.7 5.9E-05 36.5 18.6 51 84-135 36-86 (129)
19 3vkg_A Dynein heavy chain, cyt 94.4 5 0.00017 49.3 23.7 75 125-201 2014-2088(3245)
20 3oja_A Leucine-rich immune mol 94.2 2.2 7.7E-05 41.3 17.1 118 148-278 340-458 (487)
21 3q8t_A Beclin-1; autophagy, AT 91.6 4.8 0.00016 32.8 13.5 32 107-138 54-87 (96)
22 1deb_A APC protein, adenomatou 91.3 1.3 4.5E-05 33.6 8.4 51 24-74 2-52 (54)
23 1go4_E MAD1 (mitotic arrest de 90.9 0.52 1.8E-05 39.5 6.5 58 142-207 14-92 (100)
24 3ghg_A Fibrinogen alpha chain; 90.2 5.4 0.00018 41.8 14.6 25 50-74 61-85 (562)
25 1ic2_A Tropomyosin alpha chain 90.0 4.4 0.00015 31.6 10.8 62 86-163 3-64 (81)
26 3u1c_A Tropomyosin alpha-1 cha 90.0 6.9 0.00024 31.9 15.4 90 40-153 10-99 (101)
27 1deq_A Fibrinogen (alpha chain 89.8 17 0.00058 36.7 17.3 10 187-196 183-192 (390)
28 2v66_B Nuclear distribution pr 89.2 9.4 0.00032 32.4 14.4 93 85-178 6-101 (111)
29 2fxo_A Myosin heavy chain, car 89.2 9.1 0.00031 32.1 17.5 50 33-82 14-63 (129)
30 2jee_A YIIU; FTSZ, septum, coi 88.8 3.1 0.00011 33.7 9.3 42 27-68 8-49 (81)
31 3u59_A Tropomyosin beta chain; 88.4 8.8 0.0003 31.0 14.9 89 41-153 11-99 (101)
32 3ghg_A Fibrinogen alpha chain; 87.6 10 0.00035 39.8 14.5 25 36-60 54-78 (562)
33 3oja_A Leucine-rich immune mol 86.4 25 0.00084 34.0 17.2 10 28-37 324-333 (487)
34 2ocy_A RAB guanine nucleotide 85.4 19 0.00067 32.0 19.7 130 32-196 13-142 (154)
35 1s1c_X RHO-associated, coiled- 84.1 8.1 0.00028 30.7 9.2 57 86-145 3-62 (71)
36 4emc_A Monopolin complex subun 84.0 3.7 0.00013 37.9 8.2 49 33-81 21-69 (190)
37 1ic2_A Tropomyosin alpha chain 83.6 6.8 0.00023 30.5 8.6 22 185-206 43-64 (81)
38 3bas_A Myosin heavy chain, str 83.0 16 0.00055 29.1 11.4 63 145-208 26-88 (89)
39 2jee_A YIIU; FTSZ, septum, coi 82.8 5.5 0.00019 32.3 7.9 47 29-75 24-70 (81)
40 3s4r_A Vimentin; alpha-helix, 82.6 18 0.0006 29.3 11.8 67 44-135 14-80 (93)
41 3swk_A Vimentin; cytoskeleton, 82.5 12 0.00041 29.8 9.8 22 85-106 52-73 (86)
42 1deq_A Fibrinogen (alpha chain 81.4 20 0.00069 36.2 13.0 28 49-76 63-90 (390)
43 1go4_E MAD1 (mitotic arrest de 80.9 1 3.5E-05 37.7 3.1 24 228-251 73-96 (100)
44 2zxx_A Geminin; coiled-coil, c 80.6 7.7 0.00026 31.3 8.0 51 28-78 23-73 (79)
45 3hnw_A Uncharacterized protein 80.3 20 0.00069 30.9 11.1 27 49-75 78-104 (138)
46 3s4r_A Vimentin; alpha-helix, 80.3 22 0.00074 28.7 11.4 60 29-105 20-79 (93)
47 3swk_A Vimentin; cytoskeleton, 79.3 17 0.00058 29.0 9.6 23 114-136 3-25 (86)
48 3a7p_A Autophagy protein 16; c 78.0 27 0.00091 31.2 11.3 69 114-194 71-139 (152)
49 1uix_A RHO-associated kinase; 77.7 22 0.00075 28.2 9.6 58 87-145 2-62 (71)
50 3s9g_A Protein hexim1; cyclin 77.1 11 0.00038 31.9 8.2 38 32-69 44-81 (104)
51 3iox_A AGI/II, PA; alpha helix 76.5 55 0.0019 34.0 14.7 50 29-78 13-66 (497)
52 3tnu_A Keratin, type I cytoske 76.5 33 0.0011 28.7 11.2 62 114-175 48-112 (131)
53 1wlq_A Geminin; coiled-coil; 2 75.1 13 0.00044 30.4 7.8 46 28-73 27-72 (83)
54 3a7p_A Autophagy protein 16; c 74.9 42 0.0014 30.0 11.7 26 38-63 67-92 (152)
55 3q8t_A Beclin-1; autophagy, AT 74.1 34 0.0012 27.8 14.3 77 28-107 7-85 (96)
56 1f5n_A Interferon-induced guan 74.0 56 0.0019 33.9 14.2 14 27-40 433-446 (592)
57 3hnw_A Uncharacterized protein 73.6 38 0.0013 29.1 10.9 114 12-135 13-134 (138)
58 3bas_A Myosin heavy chain, str 73.1 33 0.0011 27.2 11.4 40 93-133 18-57 (89)
59 3iox_A AGI/II, PA; alpha helix 73.0 93 0.0032 32.3 16.1 25 50-74 6-30 (497)
60 1uii_A Geminin; human, DNA rep 72.9 15 0.00052 30.0 7.7 40 32-71 39-78 (83)
61 3ol1_A Vimentin; structural ge 72.9 40 0.0014 28.1 15.4 31 109-139 80-111 (119)
62 1ci6_A Transcription factor AT 71.9 11 0.00037 28.5 6.3 37 33-69 24-60 (63)
63 3ol1_A Vimentin; structural ge 71.8 42 0.0015 27.9 15.5 22 114-135 72-93 (119)
64 3he5_B Synzip2; heterodimeric 70.7 16 0.00054 27.2 6.7 39 116-155 8-46 (52)
65 2w6a_A ARF GTPase-activating p 70.4 23 0.00077 27.7 7.8 47 20-66 5-61 (63)
66 4dyl_A Tyrosine-protein kinase 69.0 35 0.0012 33.0 10.8 39 179-217 362-400 (406)
67 2oto_A M protein; helical coil 68.0 57 0.0019 27.8 19.4 40 29-68 26-65 (155)
68 3tnu_B Keratin, type II cytosk 67.9 51 0.0017 27.4 10.2 59 114-172 46-107 (129)
69 1hjb_A Ccaat/enhancer binding 67.0 10 0.00035 30.8 5.6 19 50-68 40-58 (87)
70 2eqb_B RAB guanine nucleotide 65.9 58 0.002 27.1 13.6 47 160-206 46-92 (97)
71 3mq9_A Bone marrow stromal ant 65.4 99 0.0034 29.7 16.3 73 75-156 390-466 (471)
72 1gmj_A ATPase inhibitor; coile 64.0 41 0.0014 27.5 8.5 10 76-85 27-36 (84)
73 2yy0_A C-MYC-binding protein; 62.0 12 0.0004 27.8 4.6 33 22-54 16-48 (53)
74 2oto_A M protein; helical coil 61.6 75 0.0026 27.0 20.3 26 124-149 88-113 (155)
75 4gfq_A Ribosome-recycling fact 61.1 82 0.0028 29.2 11.1 86 10-127 114-202 (209)
76 2e7s_A RAB guanine nucleotide 60.7 11 0.00037 33.1 4.9 86 227-313 5-93 (135)
77 4f61_I Stathmin-like domain R4 60.4 1.2E+02 0.004 28.9 21.5 15 23-37 40-54 (240)
78 2wt7_A Proto-oncogene protein 60.4 21 0.00071 26.7 5.8 34 144-177 27-60 (63)
79 1uix_A RHO-associated kinase; 59.7 64 0.0022 25.6 9.9 62 116-192 2-66 (71)
80 2wvr_A Geminin; DNA replicatio 59.4 45 0.0015 31.2 9.0 43 31-73 107-149 (209)
81 1m1j_B Fibrinogen beta chain; 59.3 1.6E+02 0.0055 30.1 15.5 102 87-209 98-201 (464)
82 1t6f_A Geminin; coiled-coil, c 58.9 19 0.00063 25.6 4.9 32 36-67 4-35 (37)
83 2fup_A Hypothetical protein PA 58.6 75 0.0025 26.0 9.8 43 91-133 12-54 (157)
84 3mq7_A Bone marrow stromal ant 58.2 92 0.0032 27.0 13.9 25 103-127 17-41 (121)
85 2e7s_A RAB guanine nucleotide 57.8 40 0.0014 29.5 8.0 26 120-145 69-94 (135)
86 3i00_A HIP-I, huntingtin-inter 57.7 60 0.0021 27.5 8.9 45 228-272 13-57 (120)
87 2oqq_A Transcription factor HY 57.2 29 0.00098 25.3 5.8 32 37-68 8-39 (42)
88 3nmd_A CGMP dependent protein 57.0 28 0.00094 27.7 6.2 30 138-167 38-67 (72)
89 1gu4_A CAAT/enhancer binding p 56.7 18 0.00061 28.8 5.1 21 49-69 39-59 (78)
90 1dd5_A Ribosome recycling fact 56.6 1.1E+02 0.0039 27.5 11.1 86 10-127 90-178 (185)
91 1gd2_E Transcription factor PA 56.3 16 0.00054 28.6 4.7 6 61-66 51-56 (70)
92 1ise_A Ribosome recycling fact 55.9 1.1E+02 0.0037 27.6 10.8 86 10-127 90-178 (185)
93 3m9b_A Proteasome-associated A 55.7 13 0.00046 35.4 5.0 17 85-101 78-94 (251)
94 1m1j_A Fibrinogen alpha subuni 55.5 2E+02 0.0068 29.9 13.8 26 50-75 62-87 (491)
95 2ocy_A RAB guanine nucleotide 55.4 1.1E+02 0.0039 27.1 15.8 48 160-207 78-125 (154)
96 1wqg_A Ribosome recycling fact 54.9 1.1E+02 0.0036 27.7 10.6 86 10-127 90-178 (185)
97 1ci6_A Transcription factor AT 54.0 29 0.00099 26.1 5.7 21 48-68 25-45 (63)
98 3lay_A Zinc resistance-associa 53.8 47 0.0016 29.7 8.0 30 229-258 112-141 (175)
99 2i1j_A Moesin; FERM, coiled-co 53.8 29 0.00099 35.7 7.5 95 46-146 300-397 (575)
100 1eh1_A Ribosome recycling fact 53.7 1E+02 0.0035 27.8 10.3 86 10-127 91-179 (185)
101 1t2k_D Cyclic-AMP-dependent tr 53.2 28 0.00097 25.6 5.5 32 144-175 26-57 (61)
102 1ik9_A DNA repair protein XRCC 52.6 1.4E+02 0.0047 27.3 13.3 62 90-152 133-194 (213)
103 2yy0_A C-MYC-binding protein; 52.4 24 0.00083 26.1 5.0 27 34-67 21-47 (53)
104 1is1_A Ribosome recycling fact 52.4 1.1E+02 0.0037 27.7 10.2 86 10-127 90-178 (185)
105 1t2k_D Cyclic-AMP-dependent tr 52.1 41 0.0014 24.8 6.2 17 50-66 40-56 (61)
106 1ykh_B RNA polymerase II holoe 51.9 49 0.0017 28.1 7.5 17 52-68 91-107 (132)
107 1gk4_A Vimentin; intermediate 51.5 71 0.0024 25.0 7.9 36 231-266 2-37 (84)
108 3s84_A Apolipoprotein A-IV; fo 51.0 1.6E+02 0.0055 27.6 24.3 42 224-265 148-193 (273)
109 1uii_A Geminin; human, DNA rep 50.6 30 0.001 28.2 5.6 50 28-78 27-78 (83)
110 1yke_B RNA polymerase II holoe 50.0 51 0.0017 28.8 7.5 15 24-38 49-63 (151)
111 2efr_A General control protein 49.2 1.4E+02 0.0048 26.4 21.3 40 117-157 76-115 (155)
112 2l7b_A Apolipoprotein E, APO-E 48.8 1.6E+02 0.0055 28.2 11.3 15 227-241 214-228 (307)
113 1m1j_A Fibrinogen alpha subuni 48.1 2.6E+02 0.0088 29.1 16.8 37 36-72 55-91 (491)
114 3he5_B Synzip2; heterodimeric 47.9 67 0.0023 23.8 6.6 41 86-134 7-47 (52)
115 1s1c_X RHO-associated, coiled- 47.8 1E+02 0.0035 24.4 9.8 61 115-192 3-66 (71)
116 3dzy_A Retinoic acid receptor 47.7 3.9 0.00013 40.8 0.0 12 302-313 11-22 (467)
117 2qag_B Septin-6, protein NEDD5 47.3 7.1 0.00024 39.0 1.8 73 100-172 330-402 (427)
118 2lw1_A ABC transporter ATP-bin 47.2 89 0.003 24.4 7.8 56 186-261 25-80 (89)
119 3he5_A Synzip1; heterodimeric 46.9 74 0.0025 23.4 6.6 20 28-47 6-25 (49)
120 2i1j_A Moesin; FERM, coiled-co 46.8 23 0.0008 36.4 5.5 50 48-105 337-386 (575)
121 1x8y_A Lamin A/C; structural p 45.5 32 0.0011 27.2 5.0 35 231-265 4-38 (86)
122 3i00_A HIP-I, huntingtin-inter 45.1 1.4E+02 0.0048 25.2 10.5 38 115-156 19-56 (120)
123 1t3j_A Mitofusin 1; coiled coi 45.0 58 0.002 27.0 6.6 57 123-179 30-89 (96)
124 1jnm_A Proto-oncogene C-JUN; B 44.8 31 0.0011 25.5 4.6 33 34-66 24-56 (62)
125 3tnu_A Keratin, type I cytoske 44.7 1.4E+02 0.0046 24.9 12.2 23 44-66 36-58 (131)
126 1nfn_A Apolipoprotein E3; lipi 44.1 1.7E+02 0.0059 25.9 12.9 33 174-206 90-122 (191)
127 2ve7_A Kinetochore protein HEC 43.1 26 0.0009 33.4 4.9 22 20-41 93-114 (315)
128 1gs9_A Apolipoprotein E, APOE4 43.0 1.7E+02 0.0058 25.6 10.9 28 173-200 89-116 (165)
129 1hjb_A Ccaat/enhancer binding 42.9 63 0.0022 26.1 6.4 21 29-49 40-60 (87)
130 2j5u_A MREC protein; bacterial 42.5 11 0.00038 34.9 2.2 40 232-279 21-60 (255)
131 1ge9_A Ribosome recycling fact 42.2 1.6E+02 0.0053 26.6 9.6 85 11-127 93-177 (184)
132 2j5u_A MREC protein; bacterial 41.4 13 0.00043 34.5 2.4 33 36-68 23-58 (255)
133 3lay_A Zinc resistance-associa 41.2 1.3E+02 0.0044 26.8 8.8 18 23-41 66-83 (175)
134 3mq9_A Bone marrow stromal ant 40.6 2.5E+02 0.0086 26.8 15.4 19 112-130 398-416 (471)
135 1jnm_A Proto-oncogene C-JUN; B 40.4 28 0.00094 25.8 3.7 32 144-175 26-57 (62)
136 3nmd_A CGMP dependent protein 40.0 81 0.0028 25.1 6.4 30 179-208 36-65 (72)
137 3r2p_A Apolipoprotein A-I; amp 39.7 1.9E+02 0.0064 25.1 12.9 31 235-265 153-183 (185)
138 3efg_A Protein SLYX homolog; x 39.7 1.2E+02 0.0042 23.7 7.5 30 180-209 32-61 (78)
139 2q6q_A Spindle POLE BODY compo 39.5 1.5E+02 0.005 23.8 8.7 46 28-73 6-51 (74)
140 3tnu_B Keratin, type II cytosk 39.2 1.6E+02 0.0056 24.3 13.1 22 45-66 35-56 (129)
141 3efg_A Protein SLYX homolog; x 39.0 89 0.003 24.6 6.6 24 181-204 40-63 (78)
142 1l8d_A DNA double-strand break 38.9 1.4E+02 0.0048 23.5 12.1 35 141-175 65-99 (112)
143 3qh9_A Liprin-beta-2; coiled-c 38.6 1.6E+02 0.0053 24.0 8.0 50 142-206 28-77 (81)
144 4dyl_A Tyrosine-protein kinase 38.4 2.8E+02 0.0096 26.7 28.5 26 231-256 303-328 (406)
145 2z5i_A TM, general control pro 38.1 53 0.0018 24.2 4.8 20 137-156 9-28 (52)
146 2akf_A Coronin-1A; coiled coil 37.8 23 0.00079 24.3 2.6 17 182-198 12-28 (32)
147 3s9g_A Protein hexim1; cyclin 37.5 1.6E+02 0.0054 24.9 8.2 20 155-174 66-85 (104)
148 2v4h_A NF-kappa-B essential mo 37.2 1.9E+02 0.0066 24.6 11.4 36 25-60 24-59 (110)
149 3l4q_C Phosphatidylinositol 3- 37.2 2.3E+02 0.0079 25.4 10.8 50 115-172 100-149 (170)
150 1gu4_A CAAT/enhancer binding p 37.0 69 0.0023 25.4 5.7 11 56-66 60-70 (78)
151 3haj_A Human pacsin2 F-BAR; pa 36.5 3.2E+02 0.011 26.9 26.9 95 27-126 24-118 (486)
152 1nkp_B MAX protein, MYC proto- 36.3 40 0.0014 25.9 4.2 31 33-63 48-78 (83)
153 1m1j_B Fibrinogen beta chain; 36.1 3.7E+02 0.013 27.5 17.4 19 40-58 94-112 (464)
154 2w83_C C-JUN-amino-terminal ki 35.8 38 0.0013 27.3 4.0 18 53-70 37-54 (77)
155 3ajw_A Flagellar FLIJ protein; 35.4 1.7E+02 0.006 23.5 13.2 70 184-262 34-106 (150)
156 3m91_A Proteasome-associated A 34.9 1.4E+02 0.0047 22.1 6.8 32 45-76 15-46 (51)
157 3m91_A Proteasome-associated A 34.3 1.4E+02 0.0048 22.1 6.7 38 28-65 12-49 (51)
158 1j1d_C Troponin I, TNI; THIN f 34.1 1.9E+02 0.0064 25.1 8.4 29 178-206 60-88 (133)
159 3fb2_A Spectrin alpha chain, b 34.1 2.2E+02 0.0074 24.2 16.2 35 82-116 85-119 (218)
160 4etp_A Kinesin-like protein KA 33.9 1.1E+02 0.0037 30.1 7.8 53 230-293 3-55 (403)
161 1lwu_C Fibrinogen gamma chain; 32.7 1E+02 0.0034 30.0 7.2 18 116-133 3-20 (323)
162 1f5n_A Interferon-induced guan 32.2 4.5E+02 0.015 27.2 25.2 34 135-168 500-533 (592)
163 2p2u_A HOST-nuclease inhibitor 31.7 2.2E+02 0.0076 24.9 8.7 40 113-152 18-57 (171)
164 3r2p_A Apolipoprotein A-I; amp 31.5 2.6E+02 0.0087 24.2 10.8 26 241-266 148-173 (185)
165 2dq0_A Seryl-tRNA synthetase; 31.3 2.3E+02 0.0078 28.3 9.7 20 116-135 74-93 (455)
166 3qne_A Seryl-tRNA synthetase, 31.2 2.3E+02 0.0078 29.0 9.8 12 85-96 57-68 (485)
167 1dh3_A Transcription factor CR 31.0 63 0.0022 23.8 4.3 30 46-75 22-51 (55)
168 3mq7_A Bone marrow stromal ant 30.9 2.6E+02 0.009 24.2 13.6 22 74-95 17-38 (121)
169 3hhm_B NISH2 P85alpha; PI3KCA, 30.7 3.9E+02 0.013 26.1 14.8 50 115-172 209-258 (373)
170 3u06_A Protein claret segregat 30.4 1.4E+02 0.0049 29.5 8.0 53 231-294 4-56 (412)
171 4dzn_A Coiled-coil peptide CC- 30.3 1E+02 0.0035 21.1 4.8 19 34-52 4-22 (33)
172 3m48_A General control protein 30.2 79 0.0027 22.0 4.3 25 28-52 3-27 (33)
173 1nkp_A C-MYC, MYC proto-oncoge 30.1 81 0.0028 25.0 5.1 33 33-65 53-85 (88)
174 1dip_A Delta-sleep-inducing pe 30.1 25 0.00084 28.5 2.0 30 39-68 15-44 (78)
175 3q0x_A Centriole protein; cent 29.5 2.6E+02 0.0088 26.1 9.1 42 109-151 162-203 (228)
176 1s35_A Beta-I spectrin, spectr 29.5 2.5E+02 0.0085 23.4 20.4 89 35-135 36-124 (214)
177 2wt7_B Transcription factor MA 29.2 56 0.0019 26.8 4.1 14 55-68 64-77 (90)
178 3qne_A Seryl-tRNA synthetase, 29.2 2E+02 0.0068 29.4 9.0 14 114-127 57-70 (485)
179 1am9_A Srebp-1A, protein (ster 29.0 1.4E+02 0.0048 23.1 6.2 30 226-255 46-75 (82)
180 2xdj_A Uncharacterized protein 28.9 1.4E+02 0.0049 23.8 6.3 19 49-67 23-41 (83)
181 3t98_B Nucleoporin NUP58/NUP45 28.4 26 0.00089 28.6 2.0 26 183-208 12-37 (93)
182 1j1e_C Troponin I, TNI; THIN f 28.3 2.9E+02 0.0098 25.2 8.9 29 178-206 60-88 (180)
183 1nlw_A MAD protein, MAX dimeri 28.1 76 0.0026 24.8 4.5 30 33-62 48-77 (80)
184 1l8d_A DNA double-strand break 28.0 2.2E+02 0.0075 22.4 7.6 52 15-66 47-98 (112)
185 4gkw_A Spindle assembly abnorm 28.0 3.3E+02 0.011 24.3 22.4 26 26-51 12-37 (167)
186 3azd_A Short alpha-tropomyosin 27.6 26 0.00089 24.2 1.6 23 85-107 7-29 (37)
187 3tul_A Cell invasion protein S 27.5 2.7E+02 0.0092 25.1 8.4 57 186-251 72-128 (158)
188 4emc_A Monopolin complex subun 27.5 2.3E+02 0.0078 26.1 8.2 45 50-102 17-61 (190)
189 2dq0_A Seryl-tRNA synthetase; 27.4 1.1E+02 0.0038 30.5 6.7 24 185-208 78-101 (455)
190 2v4h_A NF-kappa-B essential mo 27.3 2.9E+02 0.0099 23.5 11.2 12 118-129 45-56 (110)
191 1uuj_A Platelet-activating fac 27.1 36 0.0012 27.8 2.6 24 142-165 60-83 (88)
192 3d5a_X RF1, peptide chain rele 26.9 3E+02 0.01 27.2 9.6 92 89-201 3-94 (354)
193 2oxj_A Hybrid alpha/beta pepti 26.5 99 0.0034 21.6 4.3 25 28-52 4-28 (34)
194 2w6b_A RHO guanine nucleotide 26.5 2E+02 0.0068 22.0 6.3 24 29-52 14-37 (56)
195 3c3g_A Alpha/beta peptide with 26.3 98 0.0033 21.5 4.2 8 120-127 9-16 (33)
196 3lbx_B Beta-I spectrin, spectr 25.9 2.9E+02 0.0099 23.1 15.9 35 82-116 76-110 (185)
197 1wle_A Seryl-tRNA synthetase; 25.8 5.4E+02 0.019 26.2 12.0 104 21-136 37-141 (501)
198 1gk4_A Vimentin; intermediate 25.8 2.4E+02 0.008 22.0 10.0 25 142-166 28-52 (84)
199 3lss_A Seryl-tRNA synthetase; 25.6 4.5E+02 0.016 26.8 10.8 75 87-166 35-137 (484)
200 2zvf_A Alanyl-tRNA synthetase; 25.6 87 0.003 26.2 4.8 30 28-57 28-57 (171)
201 2wvr_A Geminin; DNA replicatio 25.1 1.1E+02 0.0037 28.7 5.6 59 28-88 96-156 (209)
202 2z5i_A TM, general control pro 24.9 88 0.003 23.0 4.1 22 178-199 7-28 (52)
203 1wt6_A Myotonin-protein kinase 24.9 2.8E+02 0.0095 22.5 9.5 51 152-203 19-72 (81)
204 2l7b_A Apolipoprotein E, APO-E 24.8 1.6E+02 0.0056 28.1 7.1 13 227-239 177-189 (307)
205 1gmj_A ATPase inhibitor; coile 24.5 2.9E+02 0.0098 22.5 8.7 18 106-123 28-45 (84)
206 3aon_A V-type sodium ATPase su 24.5 2.3E+02 0.008 25.5 7.7 55 14-68 3-60 (217)
207 2dgc_A Protein (GCN4); basic d 24.4 93 0.0032 23.4 4.3 30 46-75 30-59 (63)
208 3mtu_A Tropomyosin alpha-1 cha 23.9 2.1E+02 0.007 22.2 6.3 21 86-106 6-26 (75)
209 2p2u_A HOST-nuclease inhibitor 23.9 3.6E+02 0.012 23.5 8.7 52 84-135 18-69 (171)
210 1gs9_A Apolipoprotein E, APOE4 23.9 3.6E+02 0.012 23.5 10.3 22 186-207 62-83 (165)
211 2eqb_B RAB guanine nucleotide 23.8 3.1E+02 0.011 22.7 14.7 61 26-90 6-66 (97)
212 1nfn_A Apolipoprotein E3; lipi 23.8 3.8E+02 0.013 23.7 11.5 20 133-152 92-111 (191)
213 1dh3_A Transcription factor CR 23.7 30 0.001 25.5 1.4 23 230-252 29-51 (55)
214 2no2_A HIP-I, huntingtin-inter 23.3 3.1E+02 0.011 22.5 15.6 14 190-203 89-102 (107)
215 2wq1_A General control protein 23.0 1.2E+02 0.0042 21.0 4.2 8 120-127 9-16 (33)
216 3viq_A SWI5-dependent recombin 22.9 2.9E+02 0.0098 23.4 7.5 46 152-199 12-58 (122)
217 1fxk_C Protein (prefoldin); ar 22.9 2.6E+02 0.0088 22.7 7.1 39 28-66 91-129 (133)
218 1a93_B MAX protein, coiled coi 22.8 1.2E+02 0.0042 21.1 4.2 22 44-65 12-33 (34)
219 2oa5_A Hypothetical protein BQ 22.8 51 0.0017 28.2 2.8 24 185-208 10-33 (110)
220 1uuj_A Platelet-activating fac 22.6 38 0.0013 27.7 1.9 24 185-208 60-83 (88)
221 3ra3_B P2F; coiled coil domain 22.6 68 0.0023 21.3 2.7 24 35-58 3-26 (28)
222 4dzn_A Coiled-coil peptide CC- 22.5 1.7E+02 0.0057 20.0 4.7 23 44-66 7-29 (33)
223 3c3g_A Alpha/beta peptide with 22.5 1E+02 0.0036 21.4 3.8 20 148-167 8-27 (33)
224 1kd8_B GABH BLL, GCN4 acid bas 22.3 1.3E+02 0.0043 21.3 4.2 15 116-130 6-20 (36)
225 4dci_A Uncharacterized protein 22.2 4E+02 0.014 23.4 10.0 33 175-207 28-60 (150)
226 3q0x_A Centriole protein; cent 21.9 4.4E+02 0.015 24.6 9.1 51 80-131 162-212 (228)
227 1deb_A APC protein, adenomatou 21.7 2.7E+02 0.0091 21.1 7.3 44 116-167 8-51 (54)
228 3mud_A DNA repair protein XRCC 21.4 2.8E+02 0.0094 25.2 7.4 23 134-156 129-151 (175)
229 3swy_A Cyclic nucleotide-gated 21.3 2.4E+02 0.0083 20.5 6.9 40 147-197 5-44 (46)
230 2oa5_A Hypothetical protein BQ 20.7 91 0.0031 26.6 3.9 25 24-48 7-31 (110)
231 3u06_A Protein claret segregat 20.5 2.6E+02 0.0091 27.6 7.8 27 37-63 8-34 (412)
232 1kd8_A GABH AIV, GCN4 acid bas 20.4 1E+02 0.0035 21.8 3.4 11 118-128 8-18 (36)
233 2pms_C Pneumococcal surface pr 20.4 4.2E+02 0.014 22.9 10.0 20 116-135 66-85 (125)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.93 E-value=3e-05 Score=84.57 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHH
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LE 135 (393)
..|..++.+|..+...+..+++.+++-+ +.|..++.++..+...|+..++
T Consensus 916 ~~l~~~~~~Le~~l~ele~elee~ee~l-~el~~e~~~le~el~~L~~ele 965 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARIEEEEERS-QQLQAEKKKMQQQMLDLEEQLE 965 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566665555655554443332 2334444444444444444443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.89 E-value=0.0081 Score=50.64 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNL 65 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~L 65 (393)
.+++++.++..+...+...++.+...+..+......+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 39 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQL 39 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.63 E-value=7.6e-05 Score=81.46 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 31 QKRIESLQQQNRVLKVELETYKLQLRALQEEN 62 (393)
Q Consensus 31 ~~ri~sLqqenr~lk~ele~~k~R~k~LqeEn 62 (393)
..+++.+++....+...+..+..+...|+++.
T Consensus 863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333333333333333
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.55 E-value=0.028 Score=47.30 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
+.+...++.|..+...++.++..+...+..+..+...++.
T Consensus 16 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 55 (284)
T 1c1g_A 16 ENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATED 55 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.48 E-value=0.0042 Score=68.18 Aligned_cols=140 Identities=17% Similarity=0.253 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhH
Q psy15959 37 LQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQAL---KKEKETLAHHYEQEEEFLT 113 (393)
Q Consensus 37 Lqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~L---kkEKe~L~~~~EqEEE~LT 113 (393)
|...+..|...+..+..|+..+.++|..|......+..+.++|-. .|.+.++.| .+|+..+..++..-++- .
T Consensus 919 l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~----~L~~~l~~le~~~~e~~~~~~~v~~L~~e-~ 993 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE----KLRSDVERLRMSEEEAKNATNRVLSLQEE-I 993 (1080)
T ss_dssp --------------------------------CHHHHHHHHHHHH----HHHHTHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344455555555555556666666666665554444333333322 332222222 23333333333221111 1
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRM 192 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrm 192 (393)
..|.+.++++.+||.+||....+-++ .|+.++..|+. +...|+....+|++.+...++.+.+.+..++
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~~----~L~~kv~~L~~-------e~~~L~qq~~~l~~~~~~~~~~~~~~~~~~~ 1061 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYKH----ETEQLVSELKE-------QNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566667777777777665554442 45555544443 3445555555566444444444444444444
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.39 E-value=0.052 Score=59.72 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 187 KLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEK 256 (393)
Q Consensus 187 kLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k 256 (393)
.|.+.+.++..|+..++++.++ +-+.|...|..|..|+..|++++.+++.....+
T Consensus 995 ~l~~~~~~~~ke~~~lee~~~~---------------~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 995 KLRKELHQTQTEKKTIEEWADK---------------YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566665555543 123556777788888888888888877544443
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.81 E-value=0.3 Score=44.82 Aligned_cols=148 Identities=13% Similarity=0.157 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----
Q psy15959 40 QNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTN----- 114 (393)
Q Consensus 40 enr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN----- 114 (393)
+...++..+..+...+..|+.+...++...+.+...+ ..+.+.+..+..+..++..+.++-+..+.+
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l--------~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~k 90 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEK--------LALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER 90 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Confidence 3333333344444444555555555554444444332 335555566666666666655555555433
Q ss_pred ---HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHH
Q psy15959 115 ---DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKR 191 (393)
Q Consensus 115 ---~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKr 191 (393)
.|++.|..+..+...||..+- .++.+++.++++....+..+..+..+-..+. .+.+..+..+.+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eil--------e~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~----~~~~~~~~e~~~e 158 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIE--------NLQNEIKRKSEKQEDLKKEMLELEKLALELE----SLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 455555555544444433322 4555555555555444555554444433332 3444455556666
Q ss_pred HHHHHHHHHHHHHhhc
Q psy15959 192 MDKLEAEKRILQIKLD 207 (393)
Q Consensus 192 mdkLe~EKr~LQ~~Le 207 (393)
++.|..+...+-..++
T Consensus 159 ~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 159 QQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6666666555554443
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.55 E-value=0.46 Score=43.61 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRI 201 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~ 201 (393)
.+..++..++++...++..++....+-..-...|..+-+.++..+-..+-......|.
T Consensus 129 ~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 129 DLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444455555444444444444444444444455566666666666666666655554
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.50 E-value=0.48 Score=43.43 Aligned_cols=117 Identities=26% Similarity=0.263 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQ---EEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQN 161 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~Eq---EEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~ 161 (393)
..|..++.+|..|.+.+-.+|++ |-.-.+|.|++.|..|+..+..|-..+ ++.|.-=..|-++......-...++.
T Consensus 59 ~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~i-reLEq~NDdlEr~~R~~~~SleD~e~ 137 (189)
T 2v71_A 59 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV-RELEQANDDLERAKRATIMSLEDFEQ 137 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHhhHHHHHH
Confidence 35666677777777777666652 333446788888888888887776655 24444444555555444444456677
Q ss_pred hHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 162 NLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 162 ~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
++++....++=||..|+ |-+ .|.-.+..|..|.+-|...|.
T Consensus 138 kln~aiEr~alLE~El~-EKe----~l~~~~QRLkdE~rDLk~El~ 178 (189)
T 2v71_A 138 RLNQAIERNAFLESELD-EKE----SLLVSVQRLKDEARDLRQELA 178 (189)
T ss_dssp HHHHHHHHHHHHHHHHH-HHH----HHHCCC---------------
T ss_pred HHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777 333 334445555666665555543
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.48 E-value=0.11 Score=51.14 Aligned_cols=61 Identities=25% Similarity=0.376 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 147 RKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 147 KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
+++.+++.+...++++++++++|+.++|..++..++. +..|..++..+.++...|+.+++.
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~-~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK-QAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444455566777888889999999988765554 588999999999999999999874
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.01 E-value=0.91 Score=41.59 Aligned_cols=98 Identities=17% Similarity=0.279 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15959 137 EQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSP 216 (393)
Q Consensus 137 EQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP 216 (393)
|....+|.|++.|..|+..+..++..+-.|-....+||++.-. ...-+-=+..+++..-..+-.|+.-|+.
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~-~~~SleD~e~kln~aiEr~alLE~El~E-------- 155 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA-TIMSLEDFEQRLNQAIERNAFLESELDE-------- 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3345688888888888888888887777777777777765322 2233333445555555555555555553
Q ss_pred CCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 217 HDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQ 251 (393)
Q Consensus 217 ~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~ 251 (393)
-..|...|++||.|+.-||..|...+.
T Consensus 156 --------Ke~l~~~~QRLkdE~rDLk~El~v~~~ 182 (189)
T 2v71_A 156 --------KESLLVSVQRLKDEARDLRQELAVRER 182 (189)
T ss_dssp --------HHHHHCCC-------------------
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 234556788999999999988887764
No 12
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.89 E-value=0.7 Score=39.29 Aligned_cols=88 Identities=25% Similarity=0.227 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEF 111 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~ 111 (393)
+|+..|+..|..|++|++.+|.+....+.+-- --.|+|.+.|..|+..+..|..++ ++=|-
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~------------------~~~~~Lq~El~~lr~~~~~l~~~i-ReLEq 63 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSY------------------KQVSVLEDDLSQTRAIKEQLHKYV-RELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 57888999999999999888887766443321 124778888888888877776554 33333
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHHHHH
Q psy15959 112 LTNDLSRKLNQLTEEKYRLEQTIEQEQ 138 (393)
Q Consensus 112 LTN~L~KKL~qL~~EKv~LE~~LEqEQ 138 (393)
--.+|-+.-.-.--=-.|+|..|.+..
T Consensus 64 ~NDDLER~~R~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 64 ANDDLERAKRATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333343333333333333343333333
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.42 E-value=0.54 Score=38.19 Aligned_cols=95 Identities=25% Similarity=0.306 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLE 164 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~ 164 (393)
..+.|||+.|+.+++...-++++ +..++..+...... .|.-|..|+++|..|+.+....+..|.
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~--------~e~~~k~~e~~~~~--------~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQ--------AEADKKQAEDRCKQ--------LEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998888865 22333333332222 234455788888888888777777777
Q ss_pred HHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 165 QLRREKVELENTLEQEQEALVNKLWKRMDKLE 196 (393)
Q Consensus 165 qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe 196 (393)
... .|.+.....-.+-|.=|--|.+||.-|+
T Consensus 69 ~a~-~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 69 EAQ-EKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 655 3344444444556666666777766554
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.40 E-value=0.65 Score=37.99 Aligned_cols=95 Identities=21% Similarity=0.257 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLE 164 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~ 164 (393)
..+.|||+.|+.+++...-++++ +..++..+..... ..|.-|..|+++|..|+.+....+..|.
T Consensus 5 daIKkKm~~lk~e~e~a~drae~--------~e~~~k~~e~~~~--------~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQ--------AEADKKAAEERSK--------QLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999888865 2222222222222 1344566788888888888777777666
Q ss_pred HHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 165 QLRREKVELENTLEQEQEALVNKLWKRMDKLE 196 (393)
Q Consensus 165 qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe 196 (393)
... .|.+.....-.+-|.=|--|.+||.-|+
T Consensus 69 ea~-~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 69 KSE-DSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 543 3333333344556666666777776665
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.08 E-value=7.5 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=9.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy15959 230 THIHSLRSEVMRLRNQLANTQ 250 (393)
Q Consensus 230 ~~i~~Lr~Ev~~Lr~~l~~~q 250 (393)
.-|..|-+|-.|-..+....+
T Consensus 2077 ~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2077 ALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccccHHHHHHHHH
Confidence 334444444444444444433
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.91 E-value=2.1 Score=38.73 Aligned_cols=45 Identities=31% Similarity=0.400 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHH
Q psy15959 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLW 189 (393)
Q Consensus 145 L~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLq 189 (393)
+.-.+.++..++..+++++..|-+||-.++.-|--|-..+-+++.
T Consensus 109 ~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 109 LKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333444566777778888888888888877655555555544443
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.87 E-value=2.1 Score=38.66 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=15.4
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 227 NLSTHIHSLRSEVMRLRNQLANTQQ 251 (393)
Q Consensus 227 ~l~~~i~~Lr~Ev~~Lr~~l~~~q~ 251 (393)
.+.++|..|..|+.+++..+...+.
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~ 118 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEG 118 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777666666655553
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.65 E-value=1.7 Score=36.55 Aligned_cols=51 Identities=25% Similarity=0.407 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHH
Q psy15959 84 SNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 84 tNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LE 135 (393)
.+.|-.+...|-.+|.+|...++.|.+.+.+ ..-++..|...|.+|+..+.
T Consensus 36 r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e-~EE~~~~L~~~k~eLe~~l~ 86 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQLQVQAEQDNLAD-AEERCDQLIKNKIQLEAKVK 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777777777666553 34455666666665554443
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.38 E-value=5 Score=49.30 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=44.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 125 EEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRI 201 (393)
Q Consensus 125 ~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~ 201 (393)
.+...++..|+.-++. .+.++.+|..|++....++.+.+...+||..|+..++.=+.. +++=.+=+..|..|+.+
T Consensus 2014 ~~l~~ae~~l~~~~~~-L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k-l~rA~~Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLK-QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK-VDRSIALLDNLNSERGR 2088 (3245)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcccc
Confidence 3334444444433332 345667777777777778888888888998888877654433 22333444445555443
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.23 E-value=2.2 Score=41.26 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCCCCCCcc
Q psy15959 148 KIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLD-QPVSDPSSPHDMNNGDTAS 226 (393)
Q Consensus 148 kiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le-q~vS~~~SP~~~~~~dt~~ 226 (393)
-|-.|.+.-.+....+.+++++|+.++.. ..+.|..|.++++....+..+......+++ |-.++-..+
T Consensus 340 NLV~L~gyC~s~~~~~~~~~~~~~~l~~~-~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---------- 408 (487)
T 3oja_A 340 EIDALKEQYRTVIDQVTLRKQAKITLEQK-KKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP---------- 408 (487)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCH----------
T ss_pred chhhHHHHhcChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCc----------
Confidence 33344443333334555566666643322 223344566666666666666665555555 211111110
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHH
Q psy15959 227 NLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKL 278 (393)
Q Consensus 227 ~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl 278 (393)
.-.+.....-...+..++......+...|..+..++.++++||.|++..|
T Consensus 409 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 409 --LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 11122222222223333333334456667788889999999999987654
No 21
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.61 E-value=4.8 Score=32.81 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=24.2
Q ss_pred HHHHHhH--HHHHHHHHHHhHHHHHHHHhHHHHH
Q psy15959 107 QEEEFLT--NDLSRKLNQLTEEKYRLEQTIEQEQ 138 (393)
Q Consensus 107 qEEE~LT--N~L~KKL~qL~~EKv~LE~~LEqEQ 138 (393)
+|+.|.. |.+.+.+-.+..+...|++++..-+
T Consensus 54 eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 54 EEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665 7888888888888888888877443
No 22
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=91.32 E-value=1.3 Score=33.59 Aligned_cols=51 Identities=29% Similarity=0.443 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15959 24 PVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA 74 (393)
Q Consensus 24 ~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~ 74 (393)
..+||||...++.|..||-.||.||.---.++.-|..|--.++...+.++.
T Consensus 2 ~asYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 2 AASYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 358999999999999999999999998888888888887777776666553
No 23
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=90.94 E-value=0.52 Score=39.49 Aligned_cols=58 Identities=34% Similarity=0.387 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHH-----HH----------------HHHHHHHHHHHHHHHHHHH
Q psy15959 142 VNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQ-----EQ----------------EALVNKLWKRMDKLEAEKR 200 (393)
Q Consensus 142 VNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEq-----EQ----------------E~LVNkLqKrmdkLe~EKr 200 (393)
+++|.++|+.|+.|. ++|+++|..||-.||+ +- ++ .....+.|++|.+|..
T Consensus 14 ~~~lr~ei~~Le~E~-------~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a-~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 14 ADTLRLKVEELEGER-------SRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVA-RQRLREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHH-HHHHHHHHHHHHHHHH
Confidence 456666666665544 5666666666666655 10 11 1123566677777777
Q ss_pred HHHHhhc
Q psy15959 201 ILQIKLD 207 (393)
Q Consensus 201 ~LQ~~Le 207 (393)
.|..++-
T Consensus 86 rLr~~v~ 92 (100)
T 1go4_E 86 RLRGLLR 92 (100)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7666654
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.23 E-value=5.4 Score=41.82 Aligned_cols=25 Identities=4% Similarity=0.175 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15959 50 TYKLQLRALQEENKNLRQTSVNIQA 74 (393)
Q Consensus 50 ~~k~R~k~LqeEnr~LR~~sv~iq~ 74 (393)
.++.+|+.|..+...+.+....+..
T Consensus 61 DltkrINELKnqLEdlsKnsKdseq 85 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHS 85 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHH
Confidence 4555666555555555444444433
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.99 E-value=4.4 Score=31.63 Aligned_cols=62 Identities=27% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy15959 86 TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNL 163 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L 163 (393)
.+.|||++|+.+++....++++ +..++........ ..|.-|..|+++|..|+.+....++.|
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~--------~e~~l~~~e~~~~--------~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQ--------AEADKKAAEERSK--------QLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999988887777754 2222222222221 112335567777766655554444433
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.98 E-value=6.9 Score=31.89 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 40 QNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRK 119 (393)
Q Consensus 40 enr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KK 119 (393)
....||.+.+...-|+..++..++.+...+.+ .|+| ...|.+||+.|..+.+.+...+.. ...+
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~------~E~E--i~sL~kk~~~lE~eld~~ee~L~e--------a~~k 73 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQ------LEDD--IVQLEKQLRVTEDSRDQVLEELHK--------SEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--HHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHH--HHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 33444555666667777777777666555333 2334 357899999888877765444421 1111
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 120 LNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLE 153 (393)
Q Consensus 120 L~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLe 153 (393)
|. .....-.+-|.-|.-|.++|.-|+
T Consensus 74 Le--------e~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 74 LL--------FAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 122223455666778888876664
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.79 E-value=17 Score=36.69 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q psy15959 187 KLWKRMDKLE 196 (393)
Q Consensus 187 kLqKrmdkLe 196 (393)
.++|||+++.
T Consensus 183 ~qqKQL~qv~ 192 (390)
T 1deq_A 183 NQQKQLEQVI 192 (390)
T ss_pred HHHHHHHhhh
Confidence 3466666654
No 28
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.22 E-value=9.4 Score=32.39 Aligned_cols=93 Identities=24% Similarity=0.212 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQ---EEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQN 161 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~Eq---EEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~ 161 (393)
..|.-+...|..|.+.+-.+|++ |.--.+|.|++.|.+|+..+..|-..+- +.|.--.+|.+.-...-.-...+..
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR-eLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR-ELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchHHHHHHHHHHhhHHHHHH
Confidence 34566666777777777776663 2334568888888888888875544432 2333223333222111111223445
Q ss_pred hHHHHHHhHhHHHHhHH
Q psy15959 162 NLEQLRREKVELENTLE 178 (393)
Q Consensus 162 ~L~qLrrEKVeLEn~LE 178 (393)
++++.....+=||..|.
T Consensus 85 k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 85 RLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666554
No 29
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.18 E-value=9.1 Score=32.14 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEF 82 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEf 82 (393)
.+..+..+...|+..++......+.|.+.+..|-.....|+...+.|-+.
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~ 63 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777766666665555443
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.82 E-value=3.1 Score=33.73 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
.++|-.+|..+-.....|+.|++.+|.++.+|.+++..++..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 378888888888888888888888888888888888777654
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.43 E-value=8.8 Score=31.02 Aligned_cols=89 Identities=24% Similarity=0.321 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15959 41 NRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKL 120 (393)
Q Consensus 41 nr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL 120 (393)
...||.+.+..--|+..++..++.+...+.+. |++ ...|.|||+.|..+.+....++.. ...+|
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~------E~e--i~sL~kKiq~lE~eld~~~e~l~~--------a~~kL 74 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQL------EEE--QQGLQKKLKGTEDEVEKYSESVKE--------AQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHH--HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 33445555666677777777777666553332 233 357899999888877765544421 12222
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 121 NQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLE 153 (393)
Q Consensus 121 ~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLe 153 (393)
.. ....-.+-|.-|.-|.++|.-|+
T Consensus 75 e~--------~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 75 EQ--------AEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HH--------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 22 12222345666777888776553
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.63 E-value=10 Score=39.76 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 36 SLQQQNRVLKVELETYKLQLRALQE 60 (393)
Q Consensus 36 sLqqenr~lk~ele~~k~R~k~Lqe 60 (393)
.|..+++.++..++.+|.++..++.
T Consensus 54 lLdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHh
Confidence 3455566666666667766666633
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.43 E-value=25 Score=34.02 Aligned_cols=10 Identities=20% Similarity=0.006 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q psy15959 28 EQLQKRIESL 37 (393)
Q Consensus 28 e~~~~ri~sL 37 (393)
+++...++.|
T Consensus 324 ~eF~~Eve~L 333 (487)
T 3oja_A 324 ETERLECERE 333 (487)
T ss_dssp -CHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.45 E-value=19 Score=31.98 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEF 111 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~ 111 (393)
.+...|...+-.+|.+++..+.|++.|......++...+.. ..+..+...|...+..| .-
T Consensus 13 n~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~-------------------~~~~~e~~~L~~~l~~E-~~ 72 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKREL-------------------SDRDDEVKRLREDIAKE-NE 72 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHH-------------------HHHHHHHHHHHHHHHHH-HH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhhhHHHHHHHHHHHHH-HH
Confidence 36677888888899999999999888887665555432221 12233333333333221 11
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHH
Q psy15959 112 LTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKR 191 (393)
Q Consensus 112 LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKr 191 (393)
.--...+...++.+|-.+|=..|=.|-..||..-.+.- ...+.+.++|++.=.+ -+.++..|+.+
T Consensus 73 ~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~-------~~~e~r~~~L~~ql~e--------~~~~l~~lq~q 137 (154)
T 2ocy_A 73 LRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEK-------YAIEILNKRLTEQLRE--------KDTLLDTLTLQ 137 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 22222345567777777777777777777776543332 2233344444443332 34455555555
Q ss_pred HHHHH
Q psy15959 192 MDKLE 196 (393)
Q Consensus 192 mdkLe 196 (393)
+..|.
T Consensus 138 l~~LK 142 (154)
T 2ocy_A 138 LKNLK 142 (154)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 35
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=84.15 E-value=8.1 Score=30.68 Aligned_cols=57 Identities=30% Similarity=0.451 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHH---HHHHHHH
Q psy15959 86 TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ---ERVVNKL 145 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQ---E~lVNkL 145 (393)
+|.++|..|.+|+++|..++..=++.+...=. ..+...|..|+.+|.+|. -.-||+|
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~e---ee~~~~~~~lek~L~~E~~LK~QAVNKL 62 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKE---EEISNLKAAFEKNINTERTLKTQAVNKL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999998877643333332112 222255556777777766 3445554
No 36
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=84.04 E-value=3.7 Score=37.89 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEE 81 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEE 81 (393)
-|..|+.||..|..++++..-.+++|++++..++...+..+....++.|
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e 69 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAE 69 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 5889999999999999999999999999999999887666555444444
No 37
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.62 E-value=6.8 Score=30.54 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~L 206 (393)
|.-|+++|..|+.+....+.+|
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444
No 38
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.97 E-value=16 Score=29.06 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 145 L~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
|...+.+.+.....+.....+|-.||.+|... =.+.|..+.+|.++-..|+.....++.+|+.
T Consensus 26 lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-l~eaEe~~~~L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 26 MKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-MKQLEDKVEELLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333344444445555667777777777776 6788888999999999999999999888864
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.79 E-value=5.5 Score=32.32 Aligned_cols=47 Identities=30% Similarity=0.413 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
=|+.+|+.|.++|..|..+....+.....|..+|..|+..-...+.+
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34558888888888888888888888888999999888775555444
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=82.61 E-value=18 Score=29.27 Aligned_cols=67 Identities=28% Similarity=0.416 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15959 44 LKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQL 123 (393)
Q Consensus 44 lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL 123 (393)
|--.++.|=-+|..|.++|+.|-.....++. +....+...|+.+ ...|.++|..+
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~---------------------~~~~~~~~~ye~~----i~~Lr~~i~~~ 68 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLAELEQLKG---------------------QGKSRLGDLYEEE----MRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------ccCCCcHHHHHHH----HHHHHHHHHHH
Confidence 3344567777788888888777433211110 1122344445443 34667777777
Q ss_pred hHHHHHHHHhHH
Q psy15959 124 TEEKYRLEQTIE 135 (393)
Q Consensus 124 ~~EKv~LE~~LE 135 (393)
..+|..|+..+.
T Consensus 69 ~~ek~~l~~e~d 80 (93)
T 3s4r_A 69 TNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777765554443
No 41
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.52 E-value=12 Score=29.85 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15959 85 NTLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~E 106 (393)
+.|.|-++.+.-.|.+|+.+++
T Consensus 52 ~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 52 QSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 4555555555555555555553
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=81.41 E-value=20 Score=36.17 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15959 49 ETYKLQLRALQEENKNLRQTSVNIQAKA 76 (393)
Q Consensus 49 e~~k~R~k~LqeEnr~LR~~sv~iq~ka 76 (393)
..++.|+..|.+.+..+.+.+..++.-+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~ 90 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLT 90 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3667777777777777777776666543
No 43
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=80.89 E-value=1 Score=37.72 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 228 LSTHIHSLRSEVMRLRNQLANTQQ 251 (393)
Q Consensus 228 l~~~i~~Lr~Ev~~Lr~~l~~~q~ 251 (393)
....|..|+.||.+||..+..++.
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788999999999988876654
No 44
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=80.65 E-value=7.7 Score=31.35 Aligned_cols=51 Identities=29% Similarity=0.365 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQ 78 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEq 78 (393)
|+-++.+..-.++|+.|-.+++..+..+..|.++|+.|+..+...+.-++.
T Consensus 23 E~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laev 73 (79)
T 2zxx_A 23 EQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEV 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778999999999999999999999999998776655544443
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.34 E-value=20 Score=30.86 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 49 ETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 49 e~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
+.+...+..+..|+..|+...+..+.+
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555444444444
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.26 E-value=22 Score=28.75 Aligned_cols=60 Identities=27% Similarity=0.342 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~ 105 (393)
-|--+|-.|.++|.+|..++..++.+. ...+...+|.+ .+.|.+.|+.+..++..|....
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~~-------------~~~~~~~ye~~----i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQG-------------KSRLGDLYEEE----MRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-------------CCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 355688899999999987765554321 12344445543 3689999999999998887655
No 47
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=79.30 E-value=17 Score=28.98 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQ 136 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEq 136 (393)
+.|.++|..+..+|..|+..+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn 25 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDN 25 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 35666666666666655555443
No 48
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.97 E-value=27 Score=31.24 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMD 193 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmd 193 (393)
+.|.+.+.+|...-.+|+-.++ |....+..|+..+..|..+...++.++.+| +.|=..||.|++.++.
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~-eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL-----------q~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIA-LKNKNTERLNAALISGTIENNVLQQKLSDL-----------KKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3344444444444444444443 444455555555555555544444444444 4445567888777765
Q ss_pred H
Q psy15959 194 K 194 (393)
Q Consensus 194 k 194 (393)
+
T Consensus 139 q 139 (152)
T 3a7p_A 139 K 139 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 49
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=77.73 E-value=22 Score=28.24 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHH---HHHHHHH
Q psy15959 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ---ERVVNKL 145 (393)
Q Consensus 87 L~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQ---E~lVNkL 145 (393)
|.++|..|.+|+++|..++..=+|.+.. +.-.-......|..|+.+|.+|. -.-||+|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~-~~eee~~~~~~k~~lek~L~~E~~LK~QAVNKL 62 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSR-LKDEEISAAAIKAQFEKQLLTERTLKTQAVNKL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888777633332222 11111122244556666666665 2444444
No 50
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.12 E-value=11 Score=31.87 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTS 69 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~s 69 (393)
++++.++.+|+.|+......-.++..|+.++..||..+
T Consensus 44 ~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 44 KSLSRMEDENNRLRLESKRLDARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 34444555555555444444445555555555554443
No 51
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=76.54 E-value=55 Score=34.02 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVE----LETYKLQLRALQEENKNLRQTSVNIQAKAEQ 78 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~e----le~~k~R~k~LqeEnr~LR~~sv~iq~kaEq 78 (393)
.|+..++.+|..|..++.+ ++..+++++.++.||..+++......+.+|+
T Consensus 13 ~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 13 AYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555522 2233333444444555554444444444444
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.48 E-value=33 Score=28.73 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQ---EQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELEN 175 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEq---EQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn 175 (393)
..|.-.|+.++..|..||+++.. --+.-+..++.+|..|+++......++.+.-+|=.+|-|
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667777776632 223445566777777766665555555554444444433
No 53
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=75.12 E-value=13 Score=30.39 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQ 73 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq 73 (393)
|+-+..+....+||..|...++.....+..|.++|..|+..+...+
T Consensus 27 E~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 27 EQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456667789999999999999999999999999987655443
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=74.94 E-value=42 Score=29.99 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 38 QQQNRVLKVELETYKLQLRALQEENK 63 (393)
Q Consensus 38 qqenr~lk~ele~~k~R~k~LqeEnr 63 (393)
.+..+.|+.++..++.+++.|.++++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~ 92 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIA 92 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555443
No 55
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.11 E-value=34 Score=27.76 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFI--SNTLMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfI--tNtL~KKL~~LkkEKe~L~~~~ 105 (393)
+.+...+..|..+=..|..+|..+-.--..+..++..++..+..+ -.+|+.|. -|.+...+..+..+...|.++|
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L---~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL---DQEEAQYQREYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777766666777776666666777776666654433 34677776 4888888999999999998888
Q ss_pred HH
Q psy15959 106 EQ 107 (393)
Q Consensus 106 Eq 107 (393)
.-
T Consensus 84 ~~ 85 (96)
T 3q8t_A 84 RY 85 (96)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 56
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=73.96 E-value=56 Score=33.92 Aligned_cols=14 Identities=7% Similarity=0.363 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQ 40 (393)
Q Consensus 27 ~e~~~~ri~sLqqe 40 (393)
++.|...++.+..+
T Consensus 433 ~~~~~~~~~~~~~~ 446 (592)
T 1f5n_A 433 YRLFVQKLQDLKKK 446 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555444
No 57
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.56 E-value=38 Score=29.14 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=58.6
Q ss_pred cccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy15959 12 SMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVE--LETY-KLQLRA-----LQEENKNLRQTSVNIQAKAEQEEEFI 83 (393)
Q Consensus 12 s~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~e--le~~-k~R~k~-----LqeEnr~LR~~sv~iq~kaEqEEEfI 83 (393)
.+.|-.+.|- ++-+.+.++.=..-|....+.++.. --.+ ..|+.. +..|...++.....+....
T Consensus 13 ~I~Gk~Y~i~-g~e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l------- 84 (138)
T 3hnw_A 13 ILGGKVIKLG-GYESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDI------- 84 (138)
T ss_dssp EETTEEEEEC-SCSCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred EECCEEEEec-CCCcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4456555554 3434444444444455555555421 0000 122222 2334445554444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHH
Q psy15959 84 SNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 84 tNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LE 135 (393)
..+.+.|..|+++...+..+++.=..- -..|.+++..|+.+.+.||..++
T Consensus 85 -~~~~kE~~~lK~el~~~~~k~e~~~~e-~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 85 -ENKDKEIYDLKHELIAAQIKAESSAKE-IKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 235667777888777777777542111 23567788888888887766554
No 58
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.11 E-value=33 Score=27.23 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHh
Q psy15959 93 ALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQT 133 (393)
Q Consensus 93 ~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~ 133 (393)
++..+...|...++. ++...+.|..+..+|-.+|.+|..+
T Consensus 18 ~~eeel~~lke~l~k-~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 18 EQLKQMDKMKEDLAK-TERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445544 4455667777778888888777766
No 59
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=72.99 E-value=93 Score=32.34 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15959 50 TYKLQLRALQEENKNLRQTSVNIQA 74 (393)
Q Consensus 50 ~~k~R~k~LqeEnr~LR~~sv~iq~ 74 (393)
.|.+.+.+.|.|+..++.+...+.+
T Consensus 6 ~yq~~la~yq~elarvqkana~aka 30 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKA 30 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444444333
No 60
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=72.94 E-value=15 Score=29.97 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy15959 32 KRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVN 71 (393)
Q Consensus 32 ~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~ 71 (393)
..+....+||+.|...++.+...+..|.++|..||..+..
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888888888887888888888777765443
No 61
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=72.93 E-value=40 Score=28.06 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=19.5
Q ss_pred HHHhHH-HHHHHHHHHhHHHHHHHHhHHHHHH
Q psy15959 109 EEFLTN-DLSRKLNQLTEEKYRLEQTIEQEQE 139 (393)
Q Consensus 109 EE~LTN-~L~KKL~qL~~EKv~LE~~LEqEQE 139 (393)
+.+++. .|..+++.|+.|-..|-+..+.|..
T Consensus 80 ~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~ 111 (119)
T 3ol1_A 80 NASLARLDLERKVESLQEEIAFLKKLHEEEIQ 111 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444442 5666677777777777776666543
No 62
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.93 E-value=11 Score=28.48 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTS 69 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~s 69 (393)
++..|+.+...|..+-..++.++..|+.|+..||...
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666677777777777776543
No 63
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=71.78 E-value=42 Score=27.88 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhHH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LE 135 (393)
+.|.|-+...---|++||++++
T Consensus 72 ~~lrK~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 72 QSFRQDVDNASLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHH
Confidence 3455566666666666666554
No 64
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=70.66 E-value=16 Score=27.16 Aligned_cols=39 Identities=33% Similarity=0.620 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 116 LSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAE 155 (393)
Q Consensus 116 L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaE 155 (393)
|.|||..|++.-..||.. ||-.|.|+..|...|.+|+.|
T Consensus 8 lrkkiarlkkdnlqlerd-eqnlekiianlrdeiarlene 46 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERD-EQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhh-HhhHHHHHHHHHHHHHHHHHH
Confidence 444555555544444431 233345555555555444433
No 65
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=70.41 E-value=23 Score=27.67 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=25.0
Q ss_pred CCCCcCCHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 20 MPPSPVTREQLQK----------RIESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 20 ~p~s~~~~e~~~~----------ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
+-.+|||-++|.. +|..|-+-|..|-.|+-.+...+..||.||-.||
T Consensus 5 lsDgpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 5 SSDGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4457888887742 3444444455555555555555555555555444
No 66
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=69.01 E-value=35 Score=33.05 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q psy15959 179 QEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPH 217 (393)
Q Consensus 179 qEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~ 217 (393)
+|.-+-|.-|+-.=.+|.+++..|..+|.+.++.+|+|.
T Consensus 362 ~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~p~~ 400 (406)
T 4dyl_A 362 QEALQGLQVALCSQAKLQAQQELLQTKLEHLGPGEPPPV 400 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCCC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 355566777888888999999999999999998888874
No 67
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=67.99 E-value=57 Score=27.83 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
.+....+.|+.+|..+..++..+......|+..++.|...
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~ 65 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQ 65 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5555566666666655544444444445555555555433
No 68
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.94 E-value=51 Score=27.42 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHH-H--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhH
Q psy15959 114 NDLSRKLNQLTEEKYRLEQTIEQE-Q--ERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE 172 (393)
Q Consensus 114 N~L~KKL~qL~~EKv~LE~~LEqE-Q--E~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVe 172 (393)
..|.-.|+.++..+..||+++..= + +.-+..++.+|..|+++......++.+.-+|=.+
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 107 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445556666666677777766422 1 3445566667766666554444444444444333
No 69
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.02 E-value=10 Score=30.79 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy15959 50 TYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 50 ~~k~R~k~LqeEnr~LR~~ 68 (393)
....++..|..||..|+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~ 58 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKK 58 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444455444444
No 70
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.86 E-value=58 Score=27.14 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=26.1
Q ss_pred hhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 160 QNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 160 q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
...+.++..|=.+|--.|..|...+|--=.+.-..++...+.|+.+|
T Consensus 46 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 46 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666555444444444444444444
No 71
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.35 E-value=99 Score=29.66 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15959 75 KAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLT----NDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIE 150 (393)
Q Consensus 75 kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LT----N~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~Kkie 150 (393)
+++.|..-.+--|+++|..+++---.+.+++-- --.-+ ..|-+|..|-.+ -=+|+|.-|.+|..+|+
T Consensus 390 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 390 RAVMEARNVTHLLQQELTEAQKGFQDVEAQAAT-ANHTVMALMASLDAEKAQGQK--------KVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhh-cchhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 344455566677888888888877666665531 11111 233344433111 12356666666666666
Q ss_pred HHHHHH
Q psy15959 151 KLEAET 156 (393)
Q Consensus 151 kLeaEk 156 (393)
.++++.
T Consensus 461 ~~~~~~ 466 (471)
T 3mq9_A 461 DASAEV 466 (471)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 72
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=63.98 E-value=41 Score=27.49 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=6.1
Q ss_pred HHHHHHHhHH
Q psy15959 76 AEQEEEFISN 85 (393)
Q Consensus 76 aEqEEEfItN 85 (393)
+-+|++|+-.
T Consensus 27 aA~Ee~Yfrq 36 (84)
T 1gmj_A 27 QAEEERYFRA 36 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHH
Confidence 3467777743
No 73
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.01 E-value=12 Score=27.79 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=18.1
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 22 PSPVTREQLQKRIESLQQQNRVLKVELETYKLQ 54 (393)
Q Consensus 22 ~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R 54 (393)
|+++++|.|+..++.|++.+..|+.+++.++.+
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555555555555554444443
No 74
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=61.62 E-value=75 Score=27.04 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=13.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15959 124 TEEKYRLEQTIEQEQERVVNKLMRKI 149 (393)
Q Consensus 124 ~~EKv~LE~~LEqEQE~lVNkL~Kki 149 (393)
..++..++..|+..++.+.-.|....
T Consensus 88 ~~e~~~le~~L~e~~e~~~~~l~~~~ 113 (155)
T 2oto_A 88 SWDRQRLEKELEEKKEALELAIDQAS 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544444443
No 75
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=61.12 E-value=82 Score=29.16 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=51.9
Q ss_pred cccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy15959 10 SNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89 (393)
Q Consensus 10 ~ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~K 89 (393)
..+.||..|-+|--++|.|.=+.=++.+...-..-|.. +|.+|.. -++
T Consensus 114 nP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKva--------------IRniRrd------------------a~~ 161 (209)
T 4gfq_A 114 NPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVA--------------VRNVRRD------------------GND 161 (209)
T ss_dssp CCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH------------------HHH
T ss_pred CCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH------------------HHH
Confidence 34789999999999999775433333333222222221 1223322 233
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 90 KIQALKKEK---ETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 90 KL~~LkkEK---e~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
+|..+.+++ ++-..+++.+=+-||+.-.++++++-..|
T Consensus 162 ~lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD~~l~~K 202 (209)
T 4gfq_A 162 DLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNK 202 (209)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554 57777777777788888888888887766
No 76
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.67 E-value=11 Score=33.07 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=63.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhc
Q psy15959 227 NLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEMEEERH 306 (393)
Q Consensus 227 ~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lsesesslE~~eer~ 306 (393)
+|...+..+|.+++..+..+..++.... +...+..+...+..|-.+|+.+|..|..+|.+.=..++..+..+|-=-=--
T Consensus 5 ~LEd~L~~~r~~l~~~~~~~~~le~l~~-~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 5 SLEEQLNKSLKTIASQKAAIENYNQLKE-DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp -CCSTTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778888888888888877444 577777888899999999999999999999998888887777666433334
Q ss_pred c---HHHhhc
Q psy15959 307 Y---NEIAHS 313 (393)
Q Consensus 307 f---n~~~~~ 313 (393)
| |.|+..
T Consensus 84 FeEAN~MVa~ 93 (135)
T 2e7s_A 84 FDEANNLVAD 93 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4 445443
No 77
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=60.39 E-value=1.2e+02 Score=28.89 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.4
Q ss_pred CcCCHHHHHHHHHHH
Q psy15959 23 SPVTREQLQKRIESL 37 (393)
Q Consensus 23 s~~~~e~~~~ri~sL 37 (393)
-.+|.++++.+++.-
T Consensus 40 k~~SleEIqkKLeAA 54 (240)
T 4f61_I 40 RDPSLEEIQKKLEAA 54 (240)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 348999999998876
No 78
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.38 E-value=21 Score=26.72 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTL 177 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~L 177 (393)
.|..+.+.|+.+...++.++..|+.|+..|...|
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555556666666666666666554
No 79
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=59.66 E-value=64 Score=25.58 Aligned_cols=62 Identities=26% Similarity=0.327 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHH---HHHHHHHHHHH
Q psy15959 116 LSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQ---EALVNKLWKRM 192 (393)
Q Consensus 116 L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQ---E~LVNkLqKrm 192 (393)
|.++|..|..|+.+|-+++..=++.+-. + ..+--..-..|..++.+|.+|. -.-||||..=|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~--------~-------~eee~~~~~~k~~lek~L~~E~~LK~QAVNKLAEIM 66 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSR--------L-------KDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIM 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH--------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888877666655533332221 1 1111222345667777777776 23477776544
No 80
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=59.41 E-value=45 Score=31.22 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15959 31 QKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQ 73 (393)
Q Consensus 31 ~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq 73 (393)
+..+....+||+.|..+++.+...+..|.++|..||..+...+
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888888877777777777777776654443
No 81
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=59.35 E-value=1.6e+02 Score=30.11 Aligned_cols=102 Identities=13% Similarity=0.172 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy15959 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQL 166 (393)
Q Consensus 87 L~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qL 166 (393)
+-+.|+.|+.....|... ..+...+++.|+.++.+.+..+-++++. |+.....|++..+..
T Consensus 98 V~~~LqeLe~~l~~lsn~-Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~--------~~~~~~~~e~~~~~i---------- 158 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDT-STTMYQYVNMIDNKLVKTQKQRKDNDII--------LSEYNTEMELHYNYI---------- 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH----------
T ss_pred hHhHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhcccccccchhhH--------HHHHHHHHHHHHHHH----------
Confidence 334456666655555444 3455566677777777777777655543 333333333322111
Q ss_pred HHhHhH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15959 167 RREKVE--LENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQP 209 (393)
Q Consensus 167 rrEKVe--LEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~ 209 (393)
++.+. .... -+..+.+++.|..+|.+|+.....+......|
T Consensus 159 -~~~~~~~~~~~-i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~~~ 201 (464)
T 1m1j_B 159 -KDNLDNNIPSS-LRVLRAVIDSLHKKIQKLENAIATQTDYCRSP 201 (464)
T ss_dssp -HHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB
T ss_pred -HHHHhccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 11111 0111 11223355667777888887777666655443
No 82
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=58.94 E-value=19 Score=25.62 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 36 SLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 36 sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
...++|..|-.+++.-...+.+|.++|..|..
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 34678999999998888889999999988864
No 83
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=58.65 E-value=75 Score=26.03 Aligned_cols=43 Identities=21% Similarity=0.080 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHh
Q psy15959 91 IQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQT 133 (393)
Q Consensus 91 L~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~ 133 (393)
|.+...--..|..-+++|.+.|+..=...|..+-.+|..|-.+
T Consensus 12 L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~ 54 (157)
T 2fup_A 12 FAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQ 54 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3333344445666666666666633233666666666544443
No 84
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.23 E-value=92 Score=26.97 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=17.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 103 HHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 103 ~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
.++++|=--+|.-|+.+|.+-+.--
T Consensus 17 LrAq~ECrN~T~lLq~qLTqAQe~l 41 (121)
T 3mq7_A 17 LRAVMEARNVTHLLQQELTEAQKGF 41 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3556666778888888888776433
No 85
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.79 E-value=40 Score=29.50 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=14.8
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHH
Q psy15959 120 LNQLTEEKYRLEQTIEQEQERVVNKL 145 (393)
Q Consensus 120 L~qL~~EKv~LE~~LEqEQE~lVNkL 145 (393)
..++..|-.+|=..|=.|-..||..-
T Consensus 69 ~~~ie~ElE~LTasLFeEAN~MVa~a 94 (135)
T 2e7s_A 69 ADKLNKEVEDLTASLFDEANNLVADA 94 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555666666544
No 86
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.69 E-value=60 Score=27.54 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhH
Q psy15959 228 LSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENL 272 (393)
Q Consensus 228 l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~ 272 (393)
=..-|..|+.||.+||..+.....|+..-+.+|-.-...+..+..
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999988888777776665555444433
No 87
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=57.19 E-value=29 Score=25.30 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 37 LQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 37 Lqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
|...-+.|......+..|+..|+-||.-||+-
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333433455667899999999999975
No 88
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.03 E-value=28 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy15959 138 QERVVNKLMRKIEKLEAETDAKQNNLEQLR 167 (393)
Q Consensus 138 QE~lVNkL~KkiekLeaEk~~~q~~L~qLr 167 (393)
.+.++..|.++|...+.+...++.+|++++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666666666666666554
No 89
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.68 E-value=18 Score=28.78 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy15959 49 ETYKLQLRALQEENKNLRQTS 69 (393)
Q Consensus 49 e~~k~R~k~LqeEnr~LR~~s 69 (393)
.....++..|..||..|+...
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v 59 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKV 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 90
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=56.63 E-value=1.1e+02 Score=27.52 Aligned_cols=86 Identities=28% Similarity=0.319 Sum_probs=52.0
Q ss_pred cccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy15959 10 SNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89 (393)
Q Consensus 10 ~ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~K 89 (393)
..+.||..|-+|--++|.|.=+.=++.+...-..-|. -+|.+|.. -++
T Consensus 90 nP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKv--------------aiRniRrd------------------a~~ 137 (185)
T 1dd5_A 90 NPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKI--------------AIRNIRRE------------------ILK 137 (185)
T ss_dssp CCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHH
T ss_pred CcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHH
Confidence 3468999999999999977533333333222222221 12333322 223
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 90 KIQALKKEK---ETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 90 KL~~LkkEK---e~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
+|..+.+++ ++-..+++.+=+-||+.-.+++..+-..|
T Consensus 138 ~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~~~K 178 (185)
T 1dd5_A 138 KIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIK 178 (185)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455544 67778888888888888888888887766
No 91
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.32 E-value=16 Score=28.60 Aligned_cols=6 Identities=67% Similarity=0.960 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy15959 61 ENKNLR 66 (393)
Q Consensus 61 Enr~LR 66 (393)
||..||
T Consensus 51 en~~Lr 56 (70)
T 1gd2_E 51 ENDQLR 56 (70)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 333333
No 92
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=55.90 E-value=1.1e+02 Score=27.63 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=51.7
Q ss_pred cccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy15959 10 SNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89 (393)
Q Consensus 10 ~ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~K 89 (393)
..+.||..|-+|--++|.|.=+.=++.+...-..-|. -+|.+|.. -++
T Consensus 90 nP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKv--------------aiRniRrd------------------a~~ 137 (185)
T 1ise_A 90 NPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARV--------------AVRNVGRD------------------AND 137 (185)
T ss_dssp CCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHH
T ss_pred CcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHH
Confidence 3468999999999999977533333333222222221 12333322 223
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 90 KIQALKKEK---ETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 90 KL~~LkkEK---e~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
+|..+.+++ ++-..+++.+=+-||+.-.+++..+-..|
T Consensus 138 ~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~~~K 178 (185)
T 1ise_A 138 KVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADK 178 (185)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455544 67777888888888888888888887766
No 93
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=55.74 E-value=13 Score=35.39 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15959 85 NTLMKKIQALKKEKETL 101 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L 101 (393)
+.+.++|..|+.|.+.|
T Consensus 78 k~ar~El~~LkeElerL 94 (251)
T 3m9b_A 78 KEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455555555555544
No 94
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=55.52 E-value=2e+02 Score=29.95 Aligned_cols=26 Identities=4% Similarity=0.139 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 50 TYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 50 ~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
.++.||..|...+..+-+.+..++.-
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y 87 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRV 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 56777777777666666655555443
No 95
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.39 E-value=1.1e+02 Score=27.10 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=28.7
Q ss_pred hhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 160 QNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 160 q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
...+.++..|=.+|--.|..|...+|.-=.+.-..++.....|+.+|.
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777776554444444444445555553
No 96
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=54.95 E-value=1.1e+02 Score=27.67 Aligned_cols=86 Identities=19% Similarity=0.334 Sum_probs=51.1
Q ss_pred cccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy15959 10 SNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89 (393)
Q Consensus 10 ~ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~K 89 (393)
..+.||..|-+|--++|.|.=+.=++.+...-..-|.. +|.+|.. -++
T Consensus 90 nP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKva--------------iRniRrd------------------a~~ 137 (185)
T 1wqg_A 90 NPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVS--------------VRNIRRK------------------AME 137 (185)
T ss_dssp CCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH------------------HHH
T ss_pred CcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH------------------HHH
Confidence 34689999999999999775333333332222222211 2333322 223
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 90 KIQALKKEK---ETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 90 KL~~LkkEK---e~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
+|..+.+++ ++-..+++.+=+-||+.-.++++.+-..|
T Consensus 138 ~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~~~K 178 (185)
T 1wqg_A 138 ELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHK 178 (185)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 67777777777888888888888877666
No 97
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.05 E-value=29 Score=26.08 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy15959 48 LETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 48 le~~k~R~k~LqeEnr~LR~~ 68 (393)
...+..++..|..+|..|+..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~ 45 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKER 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 98
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=53.85 E-value=47 Score=29.71 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=22.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 229 STHIHSLRSEVMRLRNQLANTQQEHTEKME 258 (393)
Q Consensus 229 ~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~ 258 (393)
.+-|..|-.|+..|+.++.....++..+|+
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999998888877666666554
No 99
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.83 E-value=29 Score=35.68 Aligned_cols=95 Identities=19% Similarity=0.292 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15959 46 VELETYKLQLRALQEENKNLRQTS---VNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQ 122 (393)
Q Consensus 46 ~ele~~k~R~k~LqeEnr~LR~~s---v~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~q 122 (393)
.++..+|++++.-...-..=|+.. .+....+|.+ .-.|..+|.+++.+-......+.. .+--..-|..++..
T Consensus 300 ~e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~e~~~~ 374 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKK----QQEYQDRLRQMQEEMERSQANLLE-AQDMILRLEEQLRQ 374 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 566777777765544333222211 1112223333 235667777777666555554433 33334566777777
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHH
Q psy15959 123 LTEEKYRLEQTIEQEQERVVNKLM 146 (393)
Q Consensus 123 L~~EKv~LE~~LEqEQE~lVNkL~ 146 (393)
.+.|...|+..- +|.|..+.+|.
T Consensus 375 ~~~e~~~l~~~~-~~~e~~~~~l~ 397 (575)
T 2i1j_A 375 LQAAKEELEQRQ-NELQAMMQRLE 397 (575)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 777777665443 23333344443
No 100
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=53.69 E-value=1e+02 Score=27.79 Aligned_cols=86 Identities=28% Similarity=0.374 Sum_probs=51.8
Q ss_pred cccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy15959 10 SNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89 (393)
Q Consensus 10 ~ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~K 89 (393)
..+.||..|-+|--++|.|.=+.=++.+...-..-|. -+|.+|.. -++
T Consensus 91 nP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKv--------------aiRniRrd------------------a~~ 138 (185)
T 1eh1_A 91 NPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRV--------------AIRNIRRE------------------ALD 138 (185)
T ss_dssp CEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHH
T ss_pred CcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHH
Confidence 3468999999998888866433333322222211121 12333322 233
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 90 KIQALKKEK---ETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 90 KL~~LkkEK---e~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
+|..+.+++ ++-..+++.+=+-||+.-.+++..+-..|
T Consensus 139 ~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~~~K 179 (185)
T 1eh1_A 139 KLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKK 179 (185)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 77788888888888888888888887776
No 101
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.23 E-value=28 Score=25.62 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELEN 175 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn 175 (393)
.|..+.+.|+.+...+..++..|+.|...|.+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555544
No 102
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=52.61 E-value=1.4e+02 Score=27.31 Aligned_cols=62 Identities=23% Similarity=0.192 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 90 KIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 90 KL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
....++.+..+|..+++. -+.-.|.|...|+++-+.|.++|..|=.=-=.|.|....||..|
T Consensus 133 ~~~~~~~~~~~L~~e~~~-l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~l 194 (213)
T 1ik9_A 133 TIAENQAKNEHLQKENER-LLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSL 194 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555543 22333577788888888888888777665566677777776555
No 103
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.45 E-value=24 Score=26.08 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~ 67 (393)
++.|+++|..|| .++..|.+++..|+.
T Consensus 21 ~eaLk~E~~eLk-------~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMK-------EKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 455555554444 455555555555543
No 104
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=52.41 E-value=1.1e+02 Score=27.65 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=51.0
Q ss_pred cccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy15959 10 SNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89 (393)
Q Consensus 10 ~ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~K 89 (393)
..+.||..|-+|--++|.|.=+.=++.+...-..-|. -+|.+|.. -++
T Consensus 90 nP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKv--------------aiRniRrd------------------a~~ 137 (185)
T 1is1_A 90 NPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV--------------AVRNIRRD------------------ANN 137 (185)
T ss_dssp CCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHH
T ss_pred CcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH------------------HHH
Confidence 3468999999999999977533333333222222221 12333322 223
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 90 KIQALKKEK---ETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 90 KL~~LkkEK---e~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
+|..+.+++ ++-..+++.+=+-||+.-.+++..+-..|
T Consensus 138 ~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~~~K 178 (185)
T 1is1_A 138 DLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAK 178 (185)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 67777777777788888888888877766
No 105
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.12 E-value=41 Score=24.76 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15959 50 TYKLQLRALQEENKNLR 66 (393)
Q Consensus 50 ~~k~R~k~LqeEnr~LR 66 (393)
.++..+..|+.++..|+
T Consensus 40 ~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 40 QLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444444
No 106
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=51.89 E-value=49 Score=28.15 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy15959 52 KLQLRALQEENKNLRQT 68 (393)
Q Consensus 52 k~R~k~LqeEnr~LR~~ 68 (393)
-.|++.|++||+.....
T Consensus 91 ~~ri~~L~~E~~~~~~e 107 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDE 107 (132)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666555443
No 107
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=51.53 E-value=71 Score=24.98 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q psy15959 231 HIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKN 266 (393)
Q Consensus 231 ~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~ 266 (393)
.|+.|++..+.|.+.|.++++.....+..|-...-+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~ 37 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGR 37 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777776666555555443333
No 108
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=51.03 E-value=1.6e+02 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=26.1
Q ss_pred CccchhHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy15959 224 TASNLSTHIHSLRS----EVMRLRNQLANTQQEHTEKMERYVKDEK 265 (393)
Q Consensus 224 t~~~l~~~i~~Lr~----Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~ 265 (393)
..+.+..|++.|+. -...|+.+|...=.+...++.-|+.+.+
T Consensus 148 ~~~kl~~~~e~L~~ql~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr 193 (273)
T 3s84_A 148 TQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVR 193 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666543 3456666666666677777777776654
No 109
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=50.58 E-value=30 Score=28.21 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQN--RVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQ 78 (393)
Q Consensus 28 e~~~~ri~sLqqen--r~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEq 78 (393)
++|-+.++.=++.- .+| .|-+.+..++..|++++..|+.....+..-|++
T Consensus 27 e~YWk~lAE~RR~AL~eaL-~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEAL-KENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665433321 112 345678889999999999999988888776665
No 110
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=50.00 E-value=51 Score=28.82 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHH
Q psy15959 24 PVTREQLQKRIESLQ 38 (393)
Q Consensus 24 ~~~~e~~~~ri~sLq 38 (393)
+.+.+.+...++.|-
T Consensus 49 ~~~~~~f~~~~~ela 63 (151)
T 1yke_B 49 VVPPEEFSNTIDELS 63 (151)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 345566666666664
No 111
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=49.18 E-value=1.4e+02 Score=26.38 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=21.1
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 117 SRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETD 157 (393)
Q Consensus 117 ~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~ 157 (393)
..+|..|...-.+.+.+.+ +.|.-|.+|.+.|++|+.+..
T Consensus 76 EeqIk~L~~kLKEAE~RAE-~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 76 EEEIKVLSDKLKEAETRAE-FAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443 445666677777766665443
No 112
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=48.75 E-value=1.6e+02 Score=28.18 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=8.5
Q ss_pred chhHhHHHHHHHHHH
Q psy15959 227 NLSTHIHSLRSEVMR 241 (393)
Q Consensus 227 ~l~~~i~~Lr~Ev~~ 241 (393)
.+..+++.||.-+.-
T Consensus 214 ki~~~~e~Lr~~L~p 228 (307)
T 2l7b_A 214 RAQAWGERLRARMEE 228 (307)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH
Confidence 344566666665554
No 113
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.14 E-value=2.6e+02 Score=29.12 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 36 SLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNI 72 (393)
Q Consensus 36 sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~i 72 (393)
.|..+++..+..++.++.++..++.-+...-.....|
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~ 91 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVET 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 4556667777778888888888887776665554444
No 114
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.88 E-value=67 Score=23.80 Aligned_cols=41 Identities=37% Similarity=0.534 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhH
Q psy15959 86 TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTI 134 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~L 134 (393)
-|.|||-.|+++...|. +.| ..|.|-|.-|++|-..|||.+
T Consensus 7 ylrkkiarlkkdnlqle----rde----qnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLE----RDE----QNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhh----hhH----hhHHHHHHHHHHHHHHHHHHH
Confidence 47789999998765543 333 245667788888888888765
No 115
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=47.78 E-value=1e+02 Score=24.38 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHH---HHHHHHHHHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQ---EALVNKLWKR 191 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQ---E~LVNkLqKr 191 (393)
+|.++|..|..|+.+|-+++..=++.+-. +. +++.+ ..|..++.+|.+|. -.-||||..=
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~--------~~------eee~~---~~~~~lek~L~~E~~LK~QAVNKLAEI 65 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKL--------EK------EEEIS---NLKAAFEKNINTERTLKTQAVNKLAEI 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH------HHHHH---THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888899998888776666543332221 10 11122 56677888887776 2347777655
Q ss_pred H
Q psy15959 192 M 192 (393)
Q Consensus 192 m 192 (393)
|
T Consensus 66 M 66 (71)
T 1s1c_X 66 M 66 (71)
T ss_dssp H
T ss_pred H
Confidence 4
No 116
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=47.69 E-value=3.9 Score=40.83 Aligned_cols=12 Identities=8% Similarity=0.473 Sum_probs=0.0
Q ss_pred hhhhccHHHhhc
Q psy15959 302 EEERHYNEIAHS 313 (393)
Q Consensus 302 ~eer~fn~~~~~ 313 (393)
||+.+|...++.
T Consensus 11 ~~~~~~~~~~~~ 22 (467)
T 3dzy_A 11 DDDKMFSTQVNS 22 (467)
T ss_dssp ------------
T ss_pred ccccccccccCC
Confidence 567777655554
No 117
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=47.28 E-value=7.1 Score=39.01 Aligned_cols=73 Identities=12% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhH
Q psy15959 100 TLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE 172 (393)
Q Consensus 100 ~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVe 172 (393)
....+++++|+-+-..+..++.+-..+-.+.|..|-++.+.+-..+..++.+|+.....+..+...+.++|..
T Consensus 330 ~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~ 402 (427)
T 2qag_B 330 EFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTA 402 (427)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666665555555666666666777776666666666655554444444444444443
No 118
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.20 E-value=89 Score=24.43 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYV 261 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~ 261 (393)
..|=.+|++|+.++..|+..|..|.--. ..+ ..+..|-.++...+++....|.+|.
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp~~y~---------~d~-----------~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADASFFS---------QPH-----------EQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGG---------SCH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccc---------CCH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999997632100 001 4556666677777777777777774
No 119
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=46.86 E-value=74 Score=23.35 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVE 47 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~e 47 (393)
-|+...+.+|..+|.+||..
T Consensus 6 aqlenevaslenenetlkkk 25 (49)
T 3he5_A 6 AQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHh
Confidence 47777888888888887754
No 120
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=46.79 E-value=23 Score=36.39 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 48 LETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHY 105 (393)
Q Consensus 48 le~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~ 105 (393)
...+..|+..++++.+..+.+...-..++ ..|..+....+.|.+.|+.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~l~e~~~~~~~e~~~l~~~~ 386 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMI--------LRLEEQLRQLQAAKEELEQRQ 386 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777666665544433332 345556666666666665544
No 121
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.52 E-value=32 Score=27.23 Aligned_cols=35 Identities=6% Similarity=0.108 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy15959 231 HIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEK 265 (393)
Q Consensus 231 ~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~ 265 (393)
.|..|++.++.|.++|..++......+..|-.-.-
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~ 38 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLA 38 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666555555544443333
No 122
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=45.09 E-value=1.4e+02 Score=25.24 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAET 156 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk 156 (393)
.|.+.+..|+.+... +-.|.-..|..|..+|-.|+++.
T Consensus 19 ~Lkreie~lk~ele~----l~~E~q~~v~ql~~~i~~Le~eL 56 (120)
T 3i00_A 19 RLYREISGLKAQLEN----MKTESQRVVLQLKGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444332 23445555555555555555544
No 123
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=45.00 E-value=58 Score=27.05 Aligned_cols=57 Identities=30% Similarity=0.356 Sum_probs=25.7
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHhHhHHHHhHHH
Q psy15959 123 LTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETD---AKQNNLEQLRREKVELENTLEQ 179 (393)
Q Consensus 123 L~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~---~~q~~L~qLrrEKVeLEn~LEq 179 (393)
+++|-...=..|.+.-....+.|...|.+|+.+.. ..+.....||..=+-|++.|+.
T Consensus 30 VQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 30 VQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444432 3345566667666667766654
No 124
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.81 E-value=31 Score=25.54 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
+..|+.+...|..+-..++..+..|..++..|+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444
No 125
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.74 E-value=1.4e+02 Score=24.92 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 44 LKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 44 lk~ele~~k~R~k~LqeEnr~LR 66 (393)
.|.++-.++..+.+|+-++..++
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~ 58 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQL 58 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555554444443
No 126
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=44.15 E-value=1.7e+02 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=20.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 174 ENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 174 En~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
-..|..+-+.+-.+|++.|+.|.....-.-..|
T Consensus 90 ~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 90 RARLSKELQAAQARLGADMEDVCGRLVQYRGEV 122 (191)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 336677777777777777777776655444333
No 127
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.13 E-value=26 Score=33.41 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=16.1
Q ss_pred CCCCcCCHHHHHHHHHHHHHHH
Q psy15959 20 MPPSPVTREQLQKRIESLQQQN 41 (393)
Q Consensus 20 ~p~s~~~~e~~~~ri~sLqqen 41 (393)
.|.+|=|.-++..-+.+|-+-.
T Consensus 93 a~g~pHsWp~~Lg~L~WLvel~ 114 (315)
T 2ve7_A 93 TVGAPHTWPHIVAALVWLIDCI 114 (315)
T ss_dssp TTTSTTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHH
Confidence 4556677788888888887744
No 128
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=42.98 E-value=1.7e+02 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=14.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 173 LENTLEQEQEALVNKLWKRMDKLEAEKR 200 (393)
Q Consensus 173 LEn~LEqEQE~LVNkLqKrmdkLe~EKr 200 (393)
+-..+.++-+.|-.+|++.|+.+.....
T Consensus 89 l~~~l~~~~e~Lr~~L~~d~EelR~~l~ 116 (165)
T 1gs9_A 89 TRARLSKELQAAQARLGADMEDVRGRLV 116 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566666666554443
No 129
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.93 E-value=63 Score=26.11 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELE 49 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele 49 (393)
++..+++.|.++|..|+.+++
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444433
No 130
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=42.49 E-value=11 Score=34.88 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHH
Q psy15959 232 IHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQ 279 (393)
Q Consensus 232 i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~ 279 (393)
...|+.|+.+||.++..++.+.. ....++.||.||+.-|.
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~--------~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLES--------EVADLKKENKDLKESLD 60 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhc
Confidence 34466777777777666554433 34556688988877553
No 131
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=42.16 E-value=1.6e+02 Score=26.60 Aligned_cols=85 Identities=18% Similarity=0.308 Sum_probs=45.0
Q ss_pred ccccCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 11 NSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKK 90 (393)
Q Consensus 11 ss~~g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KK 90 (393)
.+.||..|-+|--++|.|.=+.=++.+...-..-|.. +|.+|..+ |.-.||
T Consensus 93 P~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKva--------------iRniRrda---------------~~~lKk 143 (184)
T 1ge9_A 93 PTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVR--------------VRNVRREA---------------KEMIEE 143 (184)
T ss_dssp CEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH---------------HHHHHH
T ss_pred cccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH---------------HHHHHH
Confidence 3578999999999998775433333333322222221 23333221 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q psy15959 91 IQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEK 127 (393)
Q Consensus 91 L~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EK 127 (393)
+. + =.++-..+++.+=+-||+.-.++++.+-..|
T Consensus 144 ~~--k-iseD~~k~~e~~iQkltd~~i~~id~~~~~K 177 (184)
T 1ge9_A 144 LE--G-ISEDEKKRALERLQKLTDKYIDEINKLMEAK 177 (184)
T ss_dssp ST--T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc--C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1 2255556666666667777777777766655
No 132
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=41.44 E-value=13 Score=34.50 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q psy15959 36 SLQQQNRVLKVELETY---KLQLRALQEENKNLRQT 68 (393)
Q Consensus 36 sLqqenr~lk~ele~~---k~R~k~LqeEnr~LR~~ 68 (393)
.|.+||+.||.++..+ ..+...|+.||..||..
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444433 35667777888888864
No 133
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.18 E-value=1.3e+02 Score=26.83 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=7.6
Q ss_pred CcCCHHHHHHHHHHHHHHH
Q psy15959 23 SPVTREQLQKRIESLQQQN 41 (393)
Q Consensus 23 s~~~~e~~~~ri~sLqqen 41 (393)
..+|.||- ..+..+.++.
T Consensus 66 LnLT~EQq-~ql~~I~~e~ 83 (175)
T 3lay_A 66 SPLTTEQQ-ATAQKIYDDY 83 (175)
T ss_dssp --CCHHHH-HHHHHHHHHH
T ss_pred ccCCHHHH-HHHHHHHHHH
Confidence 44565553 3444444443
No 134
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.62 E-value=2.5e+02 Score=26.84 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q psy15959 112 LTNDLSRKLNQLTEEKYRL 130 (393)
Q Consensus 112 LTN~L~KKL~qL~~EKv~L 130 (393)
.+--|+++|..+++--.++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHH
Confidence 3344555555555444433
No 135
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.39 E-value=28 Score=25.84 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHH
Q psy15959 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELEN 175 (393)
Q Consensus 144 kL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn 175 (393)
.|..+++.|+.+...+..++..|+.|...|.+
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555444443
No 136
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.00 E-value=81 Score=25.06 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 179 QEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 179 qEQE~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
+..+.++..|.++|+..+.+.+.|+..||.
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888888888887754
No 137
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=39.74 E-value=1.9e+02 Score=25.10 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy15959 235 LRSEVMRLRNQLANTQQEHTEKMERYVKDEK 265 (393)
Q Consensus 235 Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~ 265 (393)
|+.-|..||..|.-+-.+...|+.+.+.+.+
T Consensus 153 l~~~~e~lk~~l~Py~ee~k~kl~~~leeLk 183 (185)
T 3r2p_A 153 ARAHVDALRTHLAPYSDELRQRLAARLEALK 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 3445566777777666777777766666543
No 138
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.70 E-value=1.2e+02 Score=23.73 Aligned_cols=30 Identities=13% Similarity=-0.048 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15959 180 EQEALVNKLWKRMDKLEAEKRILQIKLDQP 209 (393)
Q Consensus 180 EQE~LVNkLqKrmdkLe~EKr~LQ~~Leq~ 209 (393)
+....|-+-|++|++|....+.|-.+|...
T Consensus 32 eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 32 ELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566777888999999888888888653
No 139
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=39.53 E-value=1.5e+02 Score=23.78 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQ 73 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq 73 (393)
-+|...+..-|+|...|..=+.+++++.--+-+-|++|-......+
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q 51 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777788888888888778888888888888888876654443
No 140
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.18 E-value=1.6e+02 Score=24.29 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15959 45 KVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 45 k~ele~~k~R~k~LqeEnr~LR 66 (393)
|.|+-.++..+.+|+-++..++
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 141
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.97 E-value=89 Score=24.56 Aligned_cols=24 Identities=4% Similarity=-0.105 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 181 QEALVNKLWKRMDKLEAEKRILQI 204 (393)
Q Consensus 181 QE~LVNkLqKrmdkLe~EKr~LQ~ 204 (393)
|...+.+|+++|..|....+.++.
T Consensus 40 Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 40 ARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444455555555544444443
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.89 E-value=1.4e+02 Score=23.47 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHH
Q psy15959 141 VVNKLMRKIEKLEAETDAKQNNLEQLRREKVELEN 175 (393)
Q Consensus 141 lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn 175 (393)
++.....++..+..+...+...+..+.++...|++
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443344444444444444333
No 143
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.56 E-value=1.6e+02 Score=24.01 Aligned_cols=50 Identities=28% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 142 VNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 142 VNkL~KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
||.|.-++..|+.|+..+..+|.--. .=+.-|++++..=++|.+.||.+|
T Consensus 28 i~~Lr~kv~elEnErlQyEkKLKsTK---------------~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 28 LRHLKIKVEELENERNQYEWKLKATK---------------AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHhhHHHHHHHHHHH
No 144
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=38.40 E-value=2.8e+02 Score=26.74 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 231 HIHSLRSEVMRLRNQLANTQQEHTEK 256 (393)
Q Consensus 231 ~i~~Lr~Ev~~Lr~~l~~~q~e~~~k 256 (393)
-...|++-+.+++.+|..++.+...|
T Consensus 303 ~~~~lq~~L~~~~~~l~~~~~~~~~k 328 (406)
T 4dyl_A 303 TVESVQHTLTSVTDELAVATEMVFRR 328 (406)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999988876
No 145
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=38.07 E-value=53 Score=24.16 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15959 137 EQERVVNKLMRKIEKLEAET 156 (393)
Q Consensus 137 EQE~lVNkL~KkiekLeaEk 156 (393)
.-|.-|.+|+|.|+.|+.+.
T Consensus 9 fAERsV~KLek~ID~LEdeL 28 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDEL 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888887544
No 146
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.79 E-value=23 Score=24.27 Aligned_cols=17 Identities=47% Similarity=0.751 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15959 182 EALVNKLWKRMDKLEAE 198 (393)
Q Consensus 182 E~LVNkLqKrmdkLe~E 198 (393)
..+|.+||+++|.|+.-
T Consensus 12 ~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 12 NAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999999853
No 147
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=37.53 E-value=1.6e+02 Score=24.94 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=12.3
Q ss_pred HHHhhhhhHHHHHHhHhHHH
Q psy15959 155 ETDAKQNNLEQLRREKVELE 174 (393)
Q Consensus 155 Ek~~~q~~L~qLrrEKVeLE 174 (393)
....++.++++|+.|...|-
T Consensus 66 ~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777766553
No 148
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=37.22 E-value=1.9e+02 Score=24.57 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQE 60 (393)
Q Consensus 25 ~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~Lqe 60 (393)
+-.+.|..++.+.++.....-.+++.++..+..+.+
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777777777766655555555444444433
No 149
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=37.21 E-value=2.3e+02 Score=25.44 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE 172 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVe 172 (393)
.|..+|..|..-|..|+..|+...++.- .|+.+..++.-+|.+|++.|..
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~r--------elERemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNR--------EIDKRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhcCHHHHHHHHHHHH
Confidence 5778889998889888888876655443 3444555566677777776654
No 150
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.04 E-value=69 Score=25.39 Aligned_cols=11 Identities=36% Similarity=0.446 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy15959 56 RALQEENKNLR 66 (393)
Q Consensus 56 k~LqeEnr~LR 66 (393)
..|..|+..||
T Consensus 60 ~~L~~E~~~Lr 70 (78)
T 1gu4_A 60 EQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 151
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=36.53 E-value=3.2e+02 Score=26.88 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 27 ~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~E 106 (393)
++-|..|++.-...+..+. .-++.|+....+=-+.|+..+.+...+.....+| .+|..=...+..+-+.++..-.
T Consensus 24 ~~~L~~r~~~g~~~~~el~---~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~e~--gtl~~aw~~~~~e~e~~a~~H~ 98 (486)
T 3haj_A 24 YKRTVKRIDDGHRLCSDLM---NCLHERARIEKAYAQQLTEWARRWRQLVEKGPQY--GTVEKAWMAFMSEAERVSELHL 98 (486)
T ss_dssp THHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCC--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776666665554 3566677766666677776666554433332333 5777777778777777777666
Q ss_pred HHHHHhHHHHHHHHHHHhHH
Q psy15959 107 QEEEFLTNDLSRKLNQLTEE 126 (393)
Q Consensus 107 qEEE~LTN~L~KKL~qL~~E 126 (393)
+=-+-|.+.+...|..+.++
T Consensus 99 ~~a~~L~~~v~~~l~~~~~e 118 (486)
T 3haj_A 99 EVKASLMNDDFEKIKNWQKE 118 (486)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 65555655566666666554
No 152
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.28 E-value=40 Score=25.92 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENK 63 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr 63 (393)
-|..|++++..|..+++.++.++..|...+.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777666666666655555443
No 153
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=36.14 E-value=3.7e+02 Score=27.48 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15959 40 QNRVLKVELETYKLQLRAL 58 (393)
Q Consensus 40 enr~lk~ele~~k~R~k~L 58 (393)
..+.++..++.++.++..+
T Consensus 94 ~q~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 94 QEKTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhHHHHHHHHHHHH
Confidence 3333444455555555444
No 154
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.81 E-value=38 Score=27.34 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhHH
Q psy15959 53 LQLRALQEENKNLRQTSV 70 (393)
Q Consensus 53 ~R~k~LqeEnr~LR~~sv 70 (393)
+|+..|--|...|+....
T Consensus 37 ~rvdELt~E~e~l~~El~ 54 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELE 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 444444444444444333
No 155
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=35.39 E-value=1.7e+02 Score=23.51 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcc---chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 184 LVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTAS---NLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERY 260 (393)
Q Consensus 184 LVNkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~---~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~ 260 (393)
.++....++..|..........+....+. |.++. +...+|..|...|...+..+...+.+....-..|
T Consensus 34 ~~~~~~~~L~~L~~~~~~y~~~~~~~~~~---------g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l 104 (150)
T 3ajw_A 34 GCQQAEEQLKMLIDYQNEYRSNLNTDMGN---------GIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSW 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC--CCS---------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777776666666542222 22332 4566777887778777777777777776665555
Q ss_pred HH
Q psy15959 261 VK 262 (393)
Q Consensus 261 ~~ 262 (393)
..
T Consensus 105 ~~ 106 (150)
T 3ajw_A 105 RE 106 (150)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 156
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.94 E-value=1.4e+02 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15959 45 KVELETYKLQLRALQEENKNLRQTSVNIQAKA 76 (393)
Q Consensus 45 k~ele~~k~R~k~LqeEnr~LR~~sv~iq~ka 76 (393)
+..+..+..|+..|.+-++..|...+.|...+
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555444433
No 157
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.26 E-value=1.4e+02 Score=22.07 Aligned_cols=38 Identities=42% Similarity=0.490 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNL 65 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~L 65 (393)
.+++.++..|-..|..|-..|..-+.++..|.+++..|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888888888888888888888888888877665
No 158
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=34.13 E-value=1.9e+02 Score=25.14 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 178 EQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 178 EqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
+.+-..+...||.+|++|+.|+=.++.++
T Consensus 60 ~~~L~e~~keLh~~I~~LEeEKYDlE~kv 88 (133)
T 1j1d_C 60 FAELQDLARQLHARVDKVDEERYDIEAKV 88 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44555566666666666666665555554
No 159
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=34.12 E-value=2.2e+02 Score=24.22 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 82 FISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDL 116 (393)
Q Consensus 82 fItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L 116 (393)
|-+..+..+|.+|......|....+.=...|...|
T Consensus 85 ~~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~q~l 119 (218)
T 3fb2_A 85 YASPEIKQKLDILDQERADLEKAWVQRRMMLDQCL 119 (218)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888877777666654444444443
No 160
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.91 E-value=1.1e+02 Score=30.13 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy15959 230 THIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLS 293 (393)
Q Consensus 230 ~~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~ls 293 (393)
+.|..|+.++..|+.+....+++... +..++..+..+|..|-..|-.|.+.+-
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKD-----------TELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555544332 345556666666666555555544443
No 161
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.66 E-value=1e+02 Score=30.05 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=9.3
Q ss_pred HHHHHHHHhHHHHHHHHh
Q psy15959 116 LSRKLNQLTEEKYRLEQT 133 (393)
Q Consensus 116 L~KKL~qL~~EKv~LE~~ 133 (393)
..+|...|..|+..||..
T Consensus 3 ~~~~~~~~~~~~~~~e~~ 20 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQI 20 (323)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666655543
No 162
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.15 E-value=4.5e+02 Score=27.24 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy15959 135 EQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRR 168 (393)
Q Consensus 135 EqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrr 168 (393)
|+|++.+-.+....-..+++....+|+.+.||..
T Consensus 500 ~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~ 533 (592)
T 1f5n_A 500 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 533 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333223366667788888888765
No 163
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=31.65 E-value=2.2e+02 Score=24.86 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 113 TNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 113 TN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekL 152 (393)
.|.-.++|..++++...++..+..|...|-.+...++..|
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l 57 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPL 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888877777777766666665444
No 164
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=31.46 E-value=2.6e+02 Score=24.22 Aligned_cols=26 Identities=8% Similarity=0.252 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhH
Q psy15959 241 RLRNQLANTQQEHTEKMERYVKDEKN 266 (393)
Q Consensus 241 ~Lr~~l~~~q~e~~~k~~~~~~ee~~ 266 (393)
++|.++..-=.+....+.-|+.+.+.
T Consensus 148 ~lr~~l~~~~e~lk~~l~Py~ee~k~ 173 (185)
T 3r2p_A 148 EMRDRARAHVDALRTHLAPYSDELRQ 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34555555555566677777777665
No 165
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.28 E-value=2.3e+02 Score=28.33 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=9.5
Q ss_pred HHHHHHHHhHHHHHHHHhHH
Q psy15959 116 LSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 116 L~KKL~qL~~EKv~LE~~LE 135 (393)
|..+..+|..+...|+..+.
T Consensus 74 l~~~~~~~~~~~~~~~~~~~ 93 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVE 93 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555544444443
No 166
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.23 E-value=2.3e+02 Score=28.98 Aligned_cols=12 Identities=33% Similarity=0.301 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q psy15959 85 NTLMKKIQALKK 96 (393)
Q Consensus 85 NtL~KKL~~Lkk 96 (393)
|.+.|.|-++++
T Consensus 57 n~~sk~i~~~k~ 68 (485)
T 3qne_A 57 NSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 444444444444
No 167
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.03 E-value=63 Score=23.76 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 46 VELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 46 ~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
.-++.+-.++..|..+|..|+.....++..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666777777777777665555443
No 168
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.95 E-value=2.6e+02 Score=24.18 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q psy15959 74 AKAEQEEEFISNTLMKKIQALK 95 (393)
Q Consensus 74 ~kaEqEEEfItNtL~KKL~~Lk 95 (393)
.++++|=--+|.-|...|.+-+
T Consensus 17 LrAq~ECrN~T~lLq~qLTqAQ 38 (121)
T 3mq7_A 17 LRAVMEARNVTHLLQQELTEAQ 38 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3566666667777777666655
No 169
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=30.71 E-value=3.9e+02 Score=26.15 Aligned_cols=50 Identities=16% Similarity=0.426 Sum_probs=32.4
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHhH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE 172 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrrEKVe 172 (393)
.|..+|..|..-|..|+..|++...... .++.++.++.-+|.||++.|..
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYR--------EIDKRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhccChHHHHHHHHHHH
Confidence 5778888888888888888776554433 2333444445566677765554
No 170
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.43 E-value=1.4e+02 Score=29.50 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHhhhh
Q psy15959 231 HIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSE 294 (393)
Q Consensus 231 ~i~~Lr~Ev~~Lr~~l~~~q~e~~~k~~~~~~ee~~~reeN~rl~~kl~~E~erreal~r~lse 294 (393)
....|+.|+..|+.++...+++... +..++..+..+|..|-..|-.|.+.+-+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQ-----------QAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888777765544 3456666666666665555555555533
No 171
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.28 E-value=1e+02 Score=21.08 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15959 34 IESLQQQNRVLKVELETYK 52 (393)
Q Consensus 34 i~sLqqenr~lk~ele~~k 52 (393)
|..|.|+...||.|+..+|
T Consensus 4 iaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 172
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.18 E-value=79 Score=21.98 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYK 52 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k 52 (393)
.||-.+|+.|-.+|..|..|.+.++
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4777888888888888877665444
No 173
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.15 E-value=81 Score=24.96 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEENKNL 65 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~L 65 (393)
=|..|+.++..+..+.+.++.+...|...+..|
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777777776666655555555555555444
No 174
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=30.11 E-value=25 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 39 QQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 39 qenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
++..+||..+..+-.|+..|+.||..||..
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555566666667777653
No 175
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.53 E-value=2.6e+02 Score=26.13 Aligned_cols=42 Identities=7% Similarity=0.230 Sum_probs=21.6
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15959 109 EEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEK 151 (393)
Q Consensus 109 EE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~Kkiek 151 (393)
++.|-..|..++..++.....|++.|++.++ -.|.++++|.+
T Consensus 162 de~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~-e~~s~~~~~~~ 203 (228)
T 3q0x_A 162 DSVVKQFLAFRLSEVKGTCHDLSDDLSRTRD-DRDSMVAQLAQ 203 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444455556666666666655555555554 22344444433
No 176
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=29.48 E-value=2.5e+02 Score=23.43 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy15959 35 ESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTN 114 (393)
Q Consensus 35 ~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN 114 (393)
+.+.+....++.++.....++..+...-..|-...- .. -+..+.++|..|...-..|....+.=...|..
T Consensus 36 ~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~-----~~-----~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~ 105 (214)
T 1s35_A 36 EQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQT-----DP-----EYLLLGQRLEGLDTGWDALGRMWESRSHTLAQ 105 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----SH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCC-----Cc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555554444432100 00 13466777777777777777666655555555
Q ss_pred HHHHHHHHHhHHHHHHHHhHH
Q psy15959 115 DLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 115 ~L~KKL~qL~~EKv~LE~~LE 135 (393)
.|. +.++.+.-.+++.-|.
T Consensus 106 ~l~--l~~F~~~~~~~~~Wl~ 124 (214)
T 1s35_A 106 CLG--FQEFQKDAKQAEAILS 124 (214)
T ss_dssp HHH--HHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHH
Confidence 553 5556666555665554
No 177
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.22 E-value=56 Score=26.76 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHh
Q psy15959 55 LRALQEENKNLRQT 68 (393)
Q Consensus 55 ~k~LqeEnr~LR~~ 68 (393)
+..|..|+..+..+
T Consensus 64 ~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 64 VEQLKQEVSRLARE 77 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 178
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.18 E-value=2e+02 Score=29.43 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHH
Q psy15959 114 NDLSRKLNQLTEEK 127 (393)
Q Consensus 114 N~L~KKL~qL~~EK 127 (393)
|.++|+|.++++.+
T Consensus 57 n~~sk~i~~~k~~~ 70 (485)
T 3qne_A 57 NSVQKEIGKRFKAK 70 (485)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCc
Confidence 55555555554443
No 179
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=28.96 E-value=1.4e+02 Score=23.14 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=22.6
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 226 SNLSTHIHSLRSEVMRLRNQLANTQQEHTE 255 (393)
Q Consensus 226 ~~l~~~i~~Lr~Ev~~Lr~~l~~~q~e~~~ 255 (393)
.....||..|..++..|......++.....
T Consensus 46 ~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 46 RKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445789999999999888877777665443
No 180
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.87 E-value=1.4e+02 Score=23.75 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15959 49 ETYKLQLRALQEENKNLRQ 67 (393)
Q Consensus 49 e~~k~R~k~LqeEnr~LR~ 67 (393)
-.+-.++..|+.|+..||-
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555553
No 181
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=28.45 E-value=26 Score=28.61 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 183 ALVNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 183 ~LVNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
.+|++..++|.........++..|..
T Consensus 12 ~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 12 VLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888888888888888876
No 182
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=28.25 E-value=2.9e+02 Score=25.16 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15959 178 EQEQEALVNKLWKRMDKLEAEKRILQIKL 206 (393)
Q Consensus 178 EqEQE~LVNkLqKrmdkLe~EKr~LQ~~L 206 (393)
+.+...+..-||.+|++|+.|+=.|+.++
T Consensus 60 e~~L~e~ckELh~~I~~LEeEKYDlE~kv 88 (180)
T 1j1e_C 60 FAELQDLARQLHARVDKVDEERYDIEAKV 88 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444445555555555555544444443
No 183
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.09 E-value=76 Score=24.83 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 33 RIESLQQQNRVLKVELETYKLQLRALQEEN 62 (393)
Q Consensus 33 ri~sLqqenr~lk~ele~~k~R~k~LqeEn 62 (393)
=|..|++++..+..+.+.++.++..|...+
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777666655555555554443
No 184
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.03 E-value=2.2e+02 Score=22.35 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=28.9
Q ss_pred CccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 15 GVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 15 g~~~~~p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
|++--+=.++++.+.....++..+.+...++.++..++.++..+..+...|+
T Consensus 47 g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 47 KGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp SEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333467776655556666666666666555555555555555444443
No 185
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=28.03 E-value=3.3e+02 Score=24.34 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 26 TREQLQKRIESLQQQNRVLKVELETY 51 (393)
Q Consensus 26 ~~e~~~~ri~sLqqenr~lk~ele~~ 51 (393)
---+|..-+++++.+....+.||+.+
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iV 37 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIV 37 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888887777776655
No 186
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=27.56 E-value=26 Score=24.24 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 85 NTLMKKIQALKKEKETLAHHYEQ 107 (393)
Q Consensus 85 NtL~KKL~~LkkEKe~L~~~~Eq 107 (393)
..|.|||+.|+.+++.+..++++
T Consensus 7 ~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888777777666654
No 187
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.53 E-value=2.7e+02 Score=25.06 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHHH
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQ 251 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Leq~vS~~~SP~~~~~~dt~~~l~~~i~~Lr~Ev~~Lr~~l~~~q~ 251 (393)
+.-++.++.++......|.+|++. +|-+|.- ..+.+.|..||.|+..+|..+...-.
T Consensus 72 ~sA~~~~d~lekKl~~aq~kL~~L--~P~~P~Y-------ak~~a~~~q~~~d~~~~~~~~~kA~~ 128 (158)
T 3tul_A 72 DTAKSVYDAATKKLTQAQNKLQSL--DPADPGY-------AQAEAAVEQAGKEATEAKEALDKATD 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcC--CCCCcch-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777788888873 3334431 24678899999999999887765543
No 188
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.52 E-value=2.3e+02 Score=26.14 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15959 50 TYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLA 102 (393)
Q Consensus 50 ~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe~L~ 102 (393)
.-..-+..|+.||..|.+........ ...|.++|..|+.......
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~~e--------i~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKATE--------IKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhhh
Confidence 33445677888888887764422222 1245555666655544333
No 189
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.36 E-value=1.1e+02 Score=30.54 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
+..|..++..|+.+...++.+|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 78 SREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666543
No 190
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.29 E-value=2.9e+02 Score=23.51 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=5.1
Q ss_pred HHHHHHhHHHHH
Q psy15959 118 RKLNQLTEEKYR 129 (393)
Q Consensus 118 KKL~qL~~EKv~ 129 (393)
..+..|+.+...
T Consensus 45 ~~idelk~ei~q 56 (110)
T 2v4h_A 45 ELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 191
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=27.06 E-value=36 Score=27.80 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Q psy15959 142 VNKLMRKIEKLEAETDAKQNNLEQ 165 (393)
Q Consensus 142 VNkL~KkiekLeaEk~~~q~~L~q 165 (393)
|-+|||||-.||++...++.+++.
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 448899999998888777777654
No 192
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=26.93 E-value=3e+02 Score=27.23 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy15959 89 KKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRR 168 (393)
Q Consensus 89 KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLrr 168 (393)
.||+.+...-..|...+.. -.|..| .++..++.+|...|+..++. ...+.+.++.++.-.. |-.
T Consensus 3 ~~l~~~~~r~~el~~~~~~-p~~~~d--~~~~~~~~ke~~~l~~~v~~-----~~~~~~~~~~~~~~~e--------l~~ 66 (354)
T 3d5a_X 3 DKLDRLEEEYRELEALLSD-PEVLKD--KGRYQSLSRRYAEMGEVIGL-----IREYRKVLEDLEQAES--------LLD 66 (354)
T ss_dssp HHHHHHTHHHHHHHHHTTS-TTTTSC--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHT--------STT
T ss_pred hHHHHHHHHHHHHHHHhcC-CchhhC--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH--------Hhc
Confidence 5666666666666665532 233333 46667777777766655542 2233333333322111 111
Q ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 169 EKVELENTLEQEQEALVNKLWKRMDKLEAEKRI 201 (393)
Q Consensus 169 EKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~ 201 (393)
...+..+.+.-+..|.++++.|+.+...
T Consensus 67 -----D~e~~~~a~~e~~~l~~~~~~le~~l~~ 94 (354)
T 3d5a_X 67 -----DPELKEMAKAEREALLARKEALEKELER 94 (354)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123344444466778888888876543
No 193
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.55 E-value=99 Score=21.62 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYK 52 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k 52 (393)
.||-.+|+.|-.+|..|..+.+.++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5778888888888877776654443
No 194
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.46 E-value=2e+02 Score=22.01 Aligned_cols=24 Identities=29% Similarity=0.500 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 29 QLQKRIESLQQQNRVLKVELETYK 52 (393)
Q Consensus 29 ~~~~ri~sLqqenr~lk~ele~~k 52 (393)
.|+-.+..|+++|..|+.-++.+.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEq 37 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQ 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777777776655543
No 195
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.29 E-value=98 Score=21.52 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=2.8
Q ss_pred HHHHhHHH
Q psy15959 120 LNQLTEEK 127 (393)
Q Consensus 120 L~qL~~EK 127 (393)
++.|-.+|
T Consensus 9 vEeLl~~~ 16 (33)
T 3c3g_A 9 LXEIXSKX 16 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 196
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=25.88 E-value=2.9e+02 Score=23.06 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15959 82 FISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDL 116 (393)
Q Consensus 82 fItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L 116 (393)
|-+..+..+|.+|......|....+.=...|...|
T Consensus 76 ~~~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l 110 (185)
T 3lbx_B 76 QASEEIREKLQQVMSRRKEMNEKWEARWERLRMLL 110 (185)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888887777776665444444443
No 197
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.82 E-value=5.4e+02 Score=26.17 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=51.9
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15959 21 PPSPVTREQLQKRIESLQQQNRVLKVEL-ETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKE 99 (393)
Q Consensus 21 p~s~~~~e~~~~ri~sLqqenr~lk~el-e~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KKL~~LkkEKe 99 (393)
|.--++..-++.-.+.+.+.....+... ...-..+-+|-++-+.+......++++ -|.+.|.|-++++.+.
T Consensus 37 ~~pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~--------rn~~sk~i~~~~~~~~ 108 (501)
T 1wle_A 37 ALPLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEE--------KEAVTEAVRALVVNQD 108 (501)
T ss_dssp CCCCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC
T ss_pred CCCccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhcCc
Confidence 3434555555555555544443333210 001134455556666665555555443 4788888888776542
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHHH
Q psy15959 100 TLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQ 136 (393)
Q Consensus 100 ~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LEq 136 (393)
.-. ..+.++ ...|..+..+|..+...|+..+..
T Consensus 109 ~~~--~~~~~~--~~~l~~~~~~l~~~i~~l~~~~~~ 141 (501)
T 1wle_A 109 NSQ--VQQDPQ--YQSLRARGREIRKQLTLLYPKEAQ 141 (501)
T ss_dssp CTT--GGGCHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc--cccccc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000011 234566667777777666665553
No 198
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.80 E-value=2.4e+02 Score=21.97 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH
Q psy15959 142 VNKLMRKIEKLEAETDAKQNNLEQL 166 (393)
Q Consensus 142 VNkL~KkiekLeaEk~~~q~~L~qL 166 (393)
+..++.+|..|+++......++.+.
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544443333333333
No 199
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.64 E-value=4.5e+02 Score=26.77 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhH------------------------HHHHHHHh----HHHHH
Q psy15959 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTE------------------------EKYRLEQT----IEQEQ 138 (393)
Q Consensus 87 L~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~------------------------EKv~LE~~----LEqEQ 138 (393)
+..+|-+|-.+...+..+++. -..--|.++|+|.++++ .+.+.+.- +++.
T Consensus 35 ~~d~~~~ld~~~r~~~~~~~~-l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 112 (484)
T 3lss_A 35 IVDAIIEADKKWRRTQFLTEA-SKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQL- 112 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy15959 139 ERVVNKLMRKIEKLEAETDAKQNNLEQL 166 (393)
Q Consensus 139 E~lVNkL~KkiekLeaEk~~~q~~L~qL 166 (393)
+..|..+|..|+++...++.++..+
T Consensus 113 ---~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 ---SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH
No 200
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.62 E-value=87 Score=26.20 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRA 57 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~ 57 (393)
+++..+|+.|+++++.++.+++.++.+...
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777776666655444
No 201
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.13 E-value=1.1e+02 Score=28.69 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Q psy15959 28 EQLQKRIESLQQQ--NRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLM 88 (393)
Q Consensus 28 e~~~~ri~sLqqe--nr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~ 88 (393)
++|-+.++.-++. ...| .|-+.+..++..|++|+..|+..+..+..-+|+ -.|+.+.|-
T Consensus 96 e~YWk~lAE~RR~AL~eaL-eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~-~q~la~vi~ 156 (209)
T 2wvr_A 96 SQYWKEVAEKRRKALYEAL-KENEKLHKEIEQKDNEIARLKKENKELAEVAEH-VQYMAELIE 156 (209)
T ss_dssp TTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5565555443322 1112 345678999999999999999999888887776 445555543
No 202
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.87 E-value=88 Score=22.96 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15959 178 EQEQEALVNKLWKRMDKLEAEK 199 (393)
Q Consensus 178 EqEQE~LVNkLqKrmdkLe~EK 199 (393)
....|.-|.||+|.+|.|+.+.
T Consensus 7 aefAERsV~KLek~ID~LEdeL 28 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDEL 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999997553
No 203
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.86 E-value=2.8e+02 Score=22.51 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=32.3
Q ss_pred HHHHHHh---hhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 152 LEAETDA---KQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQ 203 (393)
Q Consensus 152 LeaEk~~---~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~EKr~LQ 203 (393)
|++|+.+ .+++|.+.|...+..+..|- |-|.----|.-.|.+|+.+.+.|+
T Consensus 19 LeaEIqAKQ~i~EELs~vr~~ni~~eskL~-eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 19 LEEEVLTRQSLSREMEAIRTDNQNFASQLR-EAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444 45788888888888888775 555555555555666665555544
No 204
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=24.78 E-value=1.6e+02 Score=28.12 Aligned_cols=13 Identities=8% Similarity=0.294 Sum_probs=5.8
Q ss_pred chhHhHHHHHHHH
Q psy15959 227 NLSTHIHSLRSEV 239 (393)
Q Consensus 227 ~l~~~i~~Lr~Ev 239 (393)
.+..+|..||.-+
T Consensus 177 kl~~~veelr~~L 189 (307)
T 2l7b_A 177 GAERGLSAIRERL 189 (307)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 205
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.53 E-value=2.9e+02 Score=22.51 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=9.2
Q ss_pred HHHHHHhHHHHHHHHHHH
Q psy15959 106 EQEEEFLTNDLSRKLNQL 123 (393)
Q Consensus 106 EqEEE~LTN~L~KKL~qL 123 (393)
.+|++|+-..=.-+|.+|
T Consensus 28 A~Ee~YfrqkekEqL~~L 45 (84)
T 1gmj_A 28 AEEERYFRARAKEQLAAL 45 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 356666654444444443
No 206
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=24.49 E-value=2.3e+02 Score=25.48 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=27.3
Q ss_pred cCccccC---CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15959 14 DGVALMM---PPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQT 68 (393)
Q Consensus 14 ~g~~~~~---p~s~~~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~ 68 (393)
.|+..|. +|+-...=.++.|+...+.=-..|+...+.+..+...+..++..+|..
T Consensus 3 ~~~~mM~~~v~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~ 60 (217)
T 3aon_A 3 SGSSGMRLNVNPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQA 60 (217)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556432 333333334455666666666666666666666666666666655544
No 207
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.44 E-value=93 Score=23.42 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 46 VELETYKLQLRALQEENKNLRQTSVNIQAK 75 (393)
Q Consensus 46 ~ele~~k~R~k~LqeEnr~LR~~sv~iq~k 75 (393)
..+..+..++..|..+|..|+.....+...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777665555443
No 208
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=23.93 E-value=2.1e+02 Score=22.21 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15959 86 TLMKKIQALKKEKETLAHHYE 106 (393)
Q Consensus 86 tL~KKL~~LkkEKe~L~~~~E 106 (393)
.+.||+++|+.+++.+..+++
T Consensus 6 aiKkkmqaLk~Ekdna~e~~e 26 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALDRAE 26 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777766655443
No 209
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=23.90 E-value=3.6e+02 Score=23.49 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHhHH
Q psy15959 84 SNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 84 tNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE~~LE 135 (393)
.|.-+++|-.++.+...+...+..|=.-|.......+..|......|+..|.
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~ 69 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVA 69 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888988888888877777666666666666666666665555443
No 210
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=23.86 E-value=3.6e+02 Score=23.46 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy15959 186 NKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 186 NkLqKrmdkLe~EKr~LQ~~Le 207 (393)
.+|.-.|+.+..-...|+.+|.
T Consensus 62 ~~l~~~ld~l~~~~~~l~~~L~ 83 (165)
T 1gs9_A 62 ALMDETMKELKAYKSELEEQLT 83 (165)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3688899999999888888876
No 211
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.79 E-value=3.1e+02 Score=22.72 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q psy15959 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKK 90 (393)
Q Consensus 26 ~~e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR~~sv~iq~kaEqEEEfItNtL~KK 90 (393)
.++.++.++..|+.++.....++..+ ..--.+.+.+|..+.....++++|=|=||-.|+--
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L----~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeE 66 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRL----REDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 66 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777766665544333322 22223446666666666777777777777666643
No 212
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=23.77 E-value=3.8e+02 Score=23.67 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy15959 133 TIEQEQERVVNKLMRKIEKL 152 (393)
Q Consensus 133 ~LEqEQE~lVNkL~KkiekL 152 (393)
+|..+-+.+-.+|.+.|+.|
T Consensus 92 ~l~~~~e~lr~~l~kdlEel 111 (191)
T 1nfn_A 92 RLSKELQAAQARLGADMEDV 111 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 213
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.75 E-value=30 Score=25.50 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=12.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 230 THIHSLRSEVMRLRNQLANTQQE 252 (393)
Q Consensus 230 ~~i~~Lr~Ev~~Lr~~l~~~q~e 252 (393)
.-|..|..|+..|+.++..+++.
T Consensus 29 ~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 29 NRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555443
No 214
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.26 E-value=3.1e+02 Score=22.54 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q psy15959 190 KRMDKLEAEKRILQ 203 (393)
Q Consensus 190 KrmdkLe~EKr~LQ 203 (393)
.+++.+..|+..|-
T Consensus 89 ~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 89 AEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 44466666665543
No 215
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.05 E-value=1.2e+02 Score=21.03 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=2.8
Q ss_pred HHHHhHHH
Q psy15959 120 LNQLTEEK 127 (393)
Q Consensus 120 L~qL~~EK 127 (393)
++.|-.+|
T Consensus 9 VEell~~~ 16 (33)
T 2wq1_A 9 IEENTSKI 16 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33333333
No 216
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=22.93 E-value=2.9e+02 Score=23.40 Aligned_cols=46 Identities=33% Similarity=0.480 Sum_probs=21.6
Q ss_pred HHHHHHhhhhhHHHHHHh-HhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 152 LEAETDAKQNNLEQLRRE-KVELENTLEQEQEALVNKLWKRMDKLEAEK 199 (393)
Q Consensus 152 LeaEk~~~q~~L~qLrrE-KVeLEn~LEqEQE~LVNkLqKrmdkLe~EK 199 (393)
|.++...++++|+.|+.- |++=.|. ..+.+.||.| |+-..+..++-
T Consensus 12 L~~~i~~l~~~L~~lkqa~k~~~~~~-~~eL~~LI~K-Wr~asq~aaee 58 (122)
T 3viq_A 12 LEKEVRNLQEQLITAETARKVEAKNE-DKDLQTLIQK-WKNAAQQAAEV 58 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHH-HHHHHHHHHHH
Confidence 333333334444444443 2222222 3456666666 66666655543
No 217
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.92 E-value=2.6e+02 Score=22.68 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 28 e~~~~ri~sLqqenr~lk~ele~~k~R~k~LqeEnr~LR 66 (393)
+-|..|++.|......+...++..+.++..+++.++.+-
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888888888888888888888888887776653
No 218
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.83 E-value=1.2e+02 Score=21.11 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15959 44 LKVELETYKLQLRALQEENKNL 65 (393)
Q Consensus 44 lk~ele~~k~R~k~LqeEnr~L 65 (393)
...+++.+|.++..|.++++.|
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHHHHHHHHHHHHHHHHhc
Confidence 3334555555666666665543
No 219
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.83 E-value=51 Score=28.15 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
|.-|.++|.+|+-|.+.|..+|-+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999999976
No 220
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=22.60 E-value=38 Score=27.73 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q psy15959 185 VNKLWKRMDKLEAEKRILQIKLDQ 208 (393)
Q Consensus 185 VNkLqKrmdkLe~EKr~LQ~~Leq 208 (393)
|=||||++..|+++...+|..|+.
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 668999999999999999988875
No 221
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.58 E-value=68 Score=21.27 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 35 ESLQQQNRVLKVELETYKLQLRAL 58 (393)
Q Consensus 35 ~sLqqenr~lk~ele~~k~R~k~L 58 (393)
.-|.|.|..||+|+..+.-.+.+|
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 345666777776655544444433
No 222
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.53 E-value=1.7e+02 Score=20.03 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 44 LKVELETYKLQLRALQEENKNLR 66 (393)
Q Consensus 44 lk~ele~~k~R~k~LqeEnr~LR 66 (393)
||+|+..+|..+.+|.=|+..|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 223
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.53 E-value=1e+02 Score=21.37 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhhhHHHHH
Q psy15959 148 KIEKLEAETDAKQNNLEQLR 167 (393)
Q Consensus 148 kiekLeaEk~~~q~~L~qLr 167 (393)
|.+.|-.++..++.++.+|+
T Consensus 8 KvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 33333333444444444443
No 224
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.31 E-value=1.3e+02 Score=21.33 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=6.1
Q ss_pred HHHHHHHHhHHHHHH
Q psy15959 116 LSRKLNQLTEEKYRL 130 (393)
Q Consensus 116 L~KKL~qL~~EKv~L 130 (393)
|..|++.|-.+|-+|
T Consensus 6 LE~KVEeLl~~~~~L 20 (36)
T 1kd8_B 6 LKAKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHH
Confidence 333444444444333
No 225
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=22.24 E-value=4e+02 Score=23.40 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15959 175 NTLEQEQEALVNKLWKRMDKLEAEKRILQIKLD 207 (393)
Q Consensus 175 n~LEqEQE~LVNkLqKrmdkLe~EKr~LQ~~Le 207 (393)
..|.++-..-++.+-.+|.+|+.+.+.+-....
T Consensus 28 e~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777888888888888877654443
No 226
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.92 E-value=4.4e+02 Score=24.58 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=38.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q psy15959 80 EEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLE 131 (393)
Q Consensus 80 EEfItNtL~KKL~~LkkEKe~L~~~~EqEEE~LTN~L~KKL~qL~~EKv~LE 131 (393)
++.|-..|.-|+.+++..+..|..++++..+ =.|++.+.|.+.++.-.++-
T Consensus 162 de~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~-e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 162 DSVVKQFLAFRLSEVKGTCHDLSDDLSRTRD-DRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888899988888888887555 34788888888887766543
No 227
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=21.69 E-value=2.7e+02 Score=21.12 Aligned_cols=44 Identities=30% Similarity=0.415 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy15959 116 LSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLR 167 (393)
Q Consensus 116 L~KKL~qL~~EKv~LE~~LEqEQE~lVNkL~KkiekLeaEk~~~q~~L~qLr 167 (393)
|-+.++-|++|-..|-..|+ +-..+|-+|+.|...+.+=+.+|.
T Consensus 8 L~~QVe~Lk~ENshLrrEL~--------dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELE--------DNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH--------hhHHHHHHHHhhhhhHHHHHHHHc
Confidence 55566667777666655555 455666677777766666555553
No 228
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.35 E-value=2.8e+02 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 134 IEQEQERVVNKLMRKIEKLEAET 156 (393)
Q Consensus 134 LEqEQE~lVNkL~KkiekLeaEk 156 (393)
|=.--+.-|++|++.++.|+.+.
T Consensus 129 li~~AertV~kLqkeiD~LEDeL 151 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKV 151 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888888886554
No 229
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=21.31 E-value=2.4e+02 Score=20.52 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhHhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy15959 147 RKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEA 197 (393)
Q Consensus 147 KkiekLeaEk~~~q~~L~qLrrEKVeLEn~LEqEQE~LVNkLqKrmdkLe~ 197 (393)
.++++|+.-...+|.++.+|-.| -+.--.||..|+.+|+.
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae-----------~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAE-----------YNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHh
Confidence 34444555455556666666543 33344556666666654
No 230
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.71 E-value=91 Score=26.59 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 24 PVTREQLQKRIESLQQQNRVLKVEL 48 (393)
Q Consensus 24 ~~~~e~~~~ri~sLqqenr~lk~el 48 (393)
..|.|+|..++..|+=||+.||..+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999654
No 231
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.50 E-value=2.6e+02 Score=27.59 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15959 37 LQQQNRVLKVELETYKLQLRALQEENK 63 (393)
Q Consensus 37 Lqqenr~lk~ele~~k~R~k~LqeEnr 63 (393)
|..++..++...+.+...++.++.++.
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~ 34 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELE 34 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 232
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.40 E-value=1e+02 Score=21.79 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=4.1
Q ss_pred HHHHHHhHHHH
Q psy15959 118 RKLNQLTEEKY 128 (393)
Q Consensus 118 KKL~qL~~EKv 128 (393)
.|+..|-.+|-
T Consensus 8 ~kVEeLl~~~~ 18 (36)
T 1kd8_A 8 AEVEEIESEVW 18 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhH
Confidence 33333333333
No 233
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=20.36 E-value=4.2e+02 Score=22.90 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=11.8
Q ss_pred HHHHHHHHhHHHHHHHHhHH
Q psy15959 116 LSRKLNQLTEEKYRLEQTIE 135 (393)
Q Consensus 116 L~KKL~qL~~EKv~LE~~LE 135 (393)
|+.++..|..+-.+|+..+.
T Consensus 66 L~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 66 LSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 66666666666655555444
Done!