RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15959
(393 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 88.4 bits (219), Expect = 4e-19
Identities = 50/286 (17%), Positives = 119/286 (41%), Gaps = 30/286 (10%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNT 86
R +L + + L++ ++ +E + + + LQ E K ++Q ++++ + E+EE
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE------ 968
Query: 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIE------QEQER 140
Q L+ EK T ++ E+ + + + N+LT+E+ LE+ + E+E
Sbjct: 969 --AARQKLQLEKVTADGKIKKMEDDILI-MEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 141 VVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200
L + K E+ + L++ + + ELE ++ E + L +++ +L+A+
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK-RKLEGESSDLHEQIAELQAQIA 1084
Query: 201 ILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERY 260
L+ +L + + + S+ ++ + ++
Sbjct: 1085 ELKAQLAKKEEE------------LQAALARLEDETSQKNNALKKIRELESHI-SDLQED 1131
Query: 261 VKDEKNVREENLRLQRKLQREVER-REALCRHLSESESSLEMEEER 305
++ EK R + + +R L E+E + L L + + E+
Sbjct: 1132 LESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177
Score = 76.0 bits (187), Expect = 5e-15
Identities = 46/309 (14%), Positives = 125/309 (40%), Gaps = 26/309 (8%)
Query: 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFIS 84
+ + ++ +++ ++ + K + + +L+ L++++ L + +Q K + E E +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE-LY 908
Query: 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNK 144
+ L +K+ L + E + + + QL EK +++Q + +E++ +
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARI-EEEEERSQQLQAEKKKMQQQMLDLEEQL-EE 966
Query: 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTLE--------------------QEQEAL 184
+KL+ E ++++ + + +E+ E+E
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 185 VNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNG--DTASNLSTHIHSLRSEVMRL 242
L K +K E+ L+++L + + +S+L I L++++ L
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086
Query: 243 RNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEME 302
+ QLA ++E + ++DE + + L+ R+L+ + + + + E +
Sbjct: 1087 KAQLAKKEEE-LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145
Query: 303 EERHYNEIA 311
+ E+
Sbjct: 1146 KRDLSEELE 1154
Score = 71.4 bits (175), Expect = 2e-13
Identities = 35/186 (18%), Positives = 74/186 (39%), Gaps = 6/186 (3%)
Query: 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISN 85
+L K + L+++ L L + + + L + ++ + ++EE+
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK-SRQ 1056
Query: 86 TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKL 145
L K + L+ E L + + + +L +L + EE +E E + N
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIA-ELKAQLAKKEEELQAALARLEDETSQ-KNNA 1114
Query: 146 MRKIEKLEAETDAKQNNLEQLRREKVELENT---LEQEQEALVNKLWKRMDKLEAEKRIL 202
++KI +LE+ Q +LE + + + E L +E EAL +L +D ++ +
Sbjct: 1115 LKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELR 1174
Query: 203 QIKLDQ 208
Sbjct: 1175 GSDYKD 1180
Score = 64.9 bits (158), Expect = 2e-11
Identities = 54/268 (20%), Positives = 107/268 (39%), Gaps = 26/268 (9%)
Query: 53 LQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFL 112
L++ +EE + + + + ++ E + L +K L +EK L + E
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKE-LEQKHTQLCEEKNLLQEKLQAE---- 904
Query: 113 TNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE 172
+L EE +QE E +++++ +IE+ E + Q ++++++ ++
Sbjct: 905 -----TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Query: 173 LENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTA--SNLST 230
LE LE+E+ A KL+ EK K+ + D D NN T L
Sbjct: 960 LEEQLEEEEAARQ--------KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Query: 231 HIHSLRS---EVMRLRNQLANTQQEHTEK---MERYVKDEKNVREENLRLQRKLQREVER 284
+ L + E L + +H +E +K E+ R+E +++RKL+ E
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
Query: 285 REALCRHLSESESSLEMEEERHYNEIAH 312
L + L+ + + E+
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQA 1099
Score = 47.5 bits (113), Expect = 5e-06
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 7/131 (5%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNT 86
R++L+K L+ ++ L ++ + Q+ L+ + + A+ E E +N
Sbjct: 1055 RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN- 1113
Query: 87 LMKKIQALKKEKETLAHHYEQEEEFLT------NDLSRKLNQLTEEKYRLEQTIEQEQER 140
+KKI+ L+ L E E+ DLS +L L E T +QE
Sbjct: 1114 ALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173
Query: 141 VVNKLMRKIEK 151
+ +K
Sbjct: 1174 RGSDYKDDDDK 1184
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 75.5 bits (186), Expect = 7e-15
Identities = 28/245 (11%), Positives = 83/245 (33%), Gaps = 8/245 (3%)
Query: 63 KNLRQTSVNIQAKAEQ-EEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLN 121
+ +R ++ +QA ++++ +++ +K +
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895
Query: 122 QLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQ 181
+ E + + R V + + LE + Q +++ +E L + +
Sbjct: 896 CYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955
Query: 182 EALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMR 241
+KL ++ L++ ++ + + + + + L +H ++E
Sbjct: 956 ITYS----TETEKLRSDVERLRMSEEEAKNATNRVLSLQ--EEIAKLRKELHQTQTEKKT 1009
Query: 242 LRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREV-ERREALCRHLSESESSLE 300
+ + E + + + ++ E L R++ + E E + + L E LE
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
Query: 301 MEEER 305
++
Sbjct: 1070 LDLND 1074
Score = 66.3 bits (162), Expect = 6e-12
Identities = 37/194 (19%), Positives = 80/194 (41%), Gaps = 16/194 (8%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQLRA-----LQEENKNLRQTSVNIQAKAEQEEEF 82
+ K I LQ R + + E KL++ A ++ + L + +Q K +++ +
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK- 942
Query: 83 ISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVV 142
+L++K+ L+ T + E L + T L++ I + ++ +
Sbjct: 943 EYKSLLEKMNNLEITYSTETEKLRSDVERLRM-SEEEAKNATNRVLSLQEEIAKLRKEL- 1000
Query: 143 NKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMD--------K 194
++ + + +E D ++ EQL E E L+ E+E L ++ + K
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Query: 195 LEAEKRILQIKLDQ 208
L E + L++ L+
Sbjct: 1061 LVEETKQLELDLND 1074
Score = 64.0 bits (156), Expect = 4e-11
Identities = 40/266 (15%), Positives = 89/266 (33%), Gaps = 50/266 (18%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNT 86
+ L++ + Q++ + Y L+A+ R+ + K + E
Sbjct: 859 QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918
Query: 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERV----- 141
K L+ + L +++ + L K+N L + + + ER+
Sbjct: 919 YKKLHIGLENKIMQLQRKIDEQNKEY-KSLLEKMNNLEITYSTETEKLRSDVERLRMSEE 977
Query: 142 -VNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200
++ L+ E + L Q + EK T+E+ + ++ + + +L+ +
Sbjct: 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEK----KTIEEWADKYKHETEQLVSELKEQNT 1033
Query: 201 ILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERY 260
L++E L ++ + +E TE ME+
Sbjct: 1034 ---------------------------------LLKTEKEELNRRIHDQAKEITETMEK- 1059
Query: 261 VKDEKNVREENLRLQRKLQREVERRE 286
+ EE +L+ L E R +
Sbjct: 1060 -----KLVEETKQLELDLNDERLRYQ 1080
Score = 29.7 bits (67), Expect = 2.2
Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 11/189 (5%)
Query: 129 RLEQTIEQEQERVVNKLMRKIEKLEAETDA-----KQNNLEQLRREKVELENTLEQEQEA 183
R+ + Q V R T A K + +R+ + + Q
Sbjct: 789 RMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQAL 848
Query: 184 LVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLR 243
L + + +K + R + + Q + + + R R
Sbjct: 849 L--RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 244 NQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEMEE 303
+L + + ++ E + + LQRK+ + + ++L ++ E + E
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQ----LQRKIDEQNKEYKSLLEKMNNLEITYSTET 962
Query: 304 ERHYNEIAH 312
E+ +++
Sbjct: 963 EKLRSDVER 971
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 57.4 bits (139), Expect = 4e-09
Identities = 28/177 (15%), Positives = 52/177 (29%), Gaps = 13/177 (7%)
Query: 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQE--ENKNLRQTSVNIQAKAEQEEEFI 83
T+ +L KR + T+ +A QE E + A Q+ I
Sbjct: 827 TKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRI 886
Query: 84 SNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVN 143
+KK++ K E + KL L + Q
Sbjct: 887 ----LKKLENWATTKSVYLG--SNETGDSITAVQAKLKNLEAFDGECQSLEGQSNS---- 936
Query: 144 KLMRKIEKLEAETDAKQNNL-EQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEK 199
L+ + +L L E+ + ++ E N L +++L+ +
Sbjct: 937 DLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 993
Score = 29.6 bits (67), Expect = 2.4
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTL 87
+Q ++++L+ + + L ++ + L V E+++ F +
Sbjct: 911 TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGV--PELTERKDTFFAQQW 968
Query: 88 MKKIQALKKEKETLAHHYEQEEEFLTNDL 116
+ + K TL E E DL
Sbjct: 969 TGVKSSAETYKNTLLA--ELERLQKIEDL 995
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 6e-09
Identities = 54/353 (15%), Positives = 103/353 (29%), Gaps = 97/353 (27%)
Query: 15 GVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA 74
V + + T L +L E L L+ L ++L + +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTL--------TPDEVKSLLLKYLDCRPQDLPR-----EV 322
Query: 75 KAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEE-EFLTNDLSRKLNQLTEEKYR---- 129
+ + I ++ +++ + LT + LN L +YR
Sbjct: 323 LT------TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 130 ---------------LE----QTIEQEQERVVNKLMRK--IEKLEAETDAKQNNLEQLRR 168
L I+ + VVNKL + +EK Q +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--------QPKESTISI 428
Query: 169 EKVELENTLEQEQEALVNKLWKRMDKLEAEKRIL---QIKLDQPVSDPSSPHDMNNGDTA 225
+ LE ++ E E + I+ I D P+ +
Sbjct: 429 PSIYLELKVKLENEY------------ALHRSIVDHYNIPKTFDSDDLIPPYL--DQYFY 474
Query: 226 SNLSTHI----HSLRSEVMR------------LRNQ---------LANTQQEHTEKMERY 260
S++ H+ H R + R +R+ + NT Q+ + + Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPY 533
Query: 261 VKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEMEEERHYNEIAHS 313
+ D E + ++E ++ +L E+E + E AH
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE-AHK 585
Score = 55.2 bits (132), Expect = 2e-08
Identities = 57/428 (13%), Positives = 118/428 (27%), Gaps = 123/428 (28%)
Query: 7 ESDSNSMDGVALMMPPSPVTREQ----LQKRIESLQQQNRV------------LKVE-LE 49
+ + + V+R Q L++ + L+ V + ++
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 50 TYKLQ-----------LRALQEEN---KNLRQTSVNIQAKAEQEEEFISNTLMKKIQALK 95
+YK+Q L+ + L++ I + SN + +I +++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQ 231
Query: 96 KEKETL--AHHYEQE-------------EEF--------LTNDLS--RKLNQLTEEKYRL 130
E L + YE F T L+ T L
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 131 EQTI----EQEQERVVNK-LMRKIEKLEAETDAKQNNL-------EQLRREKVELENTLE 178
+ E + ++ K L + + L E N E +R +N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 179 QEQEALVNKLWKRMDKLE-AEKRILQIKL-----DQPV-----------SDPSSPHDMNN 221
+ L + ++ LE AE R + +L + S + N
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 222 GDTASNL--------STHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLR 273
+L + I S+ + L+ +L N H ++ Y
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIY---LELKVKLENEYALHRSIVDHY------------N 454
Query: 274 LQRKLQREVERREA--------LCRHLSESESSLEMEEERH----YNEIAHSMRLVGSSP 321
+ + + + HL E M R + + +R ++
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 322 SSSRPLSP 329
++S +
Sbjct: 515 NASGSILN 522
Score = 51.8 bits (123), Expect = 3e-07
Identities = 63/374 (16%), Positives = 122/374 (32%), Gaps = 98/374 (26%)
Query: 20 MPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQE 79
MP S +++E++ I + ++ V T +L L + + + Q V
Sbjct: 41 MPKSILSKEEI-DHI--IMSKDAVSG----TLRL-FWTLLSKQEEMVQKFVE--EVLRIN 90
Query: 80 EEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKY---RLEQTIEQ 136
+F LM I+ +++ + Y ++ + L ND NQ+ KY RL+
Sbjct: 91 YKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYND-----NQVF-AKYNVSRLQ----- 135
Query: 137 EQERVVNKLMRKIEKLEAETDAKQNNLEQLRREK-VELE------------NTLEQE--Q 181
KL + L +LR K V ++ + Q
Sbjct: 136 -----------PYLKL-------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 182 EALVNKL-WKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVM 240
+ K+ W + + + +L++ Q + P+ + D +SN+ IHS+++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--- 232
Query: 241 RLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHL--SESESS 298
LR L + E+ + V++ K NL C+ L + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---------------CKILLTTRFKQV 277
Query: 299 LEMEEERHYNEIAHSMRLVGSSPSSSRPLSPGASMLTTKE---PRCFACGQTTVMP---- 351
+ I+ + +P + L L + PR T P
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPR-EVL---TTNPRRLS 331
Query: 352 -IPPPVHSRPQRIK 364
I +
Sbjct: 332 IIAESIRDGLATWD 345
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 56.2 bits (136), Expect = 1e-08
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 7/162 (4%)
Query: 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFIS 84
+T ++ +L++ + L + + + + + ++ A + ++
Sbjct: 851 LTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLG 910
Query: 85 NT----LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQER 140
+ + +QA K E + E +DL L QLTE Y + + ++
Sbjct: 911 SNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDT 970
Query: 141 VVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQE 182
++ +++ + +N L ++E+
Sbjct: 971 ---FFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
Score = 46.6 bits (111), Expect = 1e-05
Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 6/179 (3%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQ----LRALQEENKNLRQTSVNIQAKAEQEEEF 82
+ + +S++ + E K + + + E ++ +
Sbjct: 788 SLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVA 847
Query: 83 ISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ-ERV 141
+ +I + E + + +K+ L ++ R+ + +E +
Sbjct: 848 PAGLTPNEIDSTWSALEKAEQEHAEALRIE-LKRQKKIAVLLQKYNRILKKLENWATTKS 906
Query: 142 VNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200
V + AK NLE E LE + +++ +L + E
Sbjct: 907 VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELT 965
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 9e-07
Identities = 71/454 (15%), Positives = 121/454 (26%), Gaps = 165/454 (36%)
Query: 55 LRALQEENKNLRQT---SVNIQAKAEQ-EEEFISNTLMKKIQALKKEKET---------- 100
R L + +L A Q +E+F L + + + E
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAADDEPTTPAELVGKF 64
Query: 101 LAH-----------HYEQ---------EEEFL-TND---LSRKLNQLTEEK--------- 127
L + ++Q E +L ND L+ KL Q +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 128 --YRLEQTIEQEQERVVN-KLMRKIEKLEAETDAK---QNN----LEQLRREKVELENTL 177
++ ++ N L R + + A+ A Q N E+LR +L T
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR----DLYQTY 180
Query: 178 EQEQEALVNKLWKRMDKL-----EAEK---RILQIK--LDQPVSDP------SSP----- 216
L+ + + +L +AEK + L I L+ P + P S P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 217 ---------------HDMNNGDTASNL---STHI------------------HSLRSEVM 240
G+ S L + H + +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 241 R------LRNQLANTQQEHTEKMERYVKDEKNVREEN----LRLQRKLQREVERR-EALC 289
+R A + ++D E L + Q +V+
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSI---LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 290 RHLSESES---SLEMEEERHYNEIAHSMRLVGSSPSS-------SRPLSPGASMLTTKEP 339
HL + SL N +V P S R + + ++ P
Sbjct: 358 SHLPAGKQVEISL-------VN--GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 340 RCFA----CGQTTVMPIPPPVHSRPQRIKTPLLS 369
F+ +P+ P HS LL
Sbjct: 409 --FSERKLKFSNRFLPVASPFHS-------HLLV 433
Score = 38.9 bits (90), Expect = 0.004
Identities = 38/265 (14%), Positives = 78/265 (29%), Gaps = 88/265 (33%)
Query: 46 VELETYKLQLRAL----QEENKNLRQTSVNIQ--------AKAEQEEEFISNTLMKKIQA 93
++L Y + + L E L+ + + Q A+ + E F + +A
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR----KA 299
Query: 94 LKKEKETLAHH-YEQEEEFLTNDLSRKLNQLTEE----------------KYRLEQTIEQ 136
+ L E + L + + + E + +++ + +
Sbjct: 300 I----TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 137 ------EQERV----VN---------------KLMRKIEKLEAETDAKQNNLEQLRREKV 171
++V VN L + K +A + Q+ + K+
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-FSERKL 414
Query: 172 ELENT------------LEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDM 219
+ N L + + L K A+ +QI PV +D
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD--IQI----PV------YDT 462
Query: 220 NNGDTASNLSTHI-HSLRSEVMRLR 243
+G LS I + ++RL
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLP 487
Score = 38.1 bits (88), Expect = 0.006
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 38/128 (29%)
Query: 21 PPSP------VTREQLQKRIESLQQ----------------QNRVLK---VELETYKLQL 55
PSP +T+EQ+Q + +N V+ L L L
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 56 RALQEENKNLRQTSV-NIQAKAEQEEEF--IS----NTLMKKIQALKKEKETLAHHYEQE 108
R + + L Q+ + + K + F ++ + L+ A + L +
Sbjct: 394 RKAKAPSG-LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP--ASDLINKDLV---KNN 447
Query: 109 EEFLTNDL 116
F D+
Sbjct: 448 VSFNAKDI 455
Score = 35.8 bits (82), Expect = 0.029
Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 35/148 (23%)
Query: 180 EQEALVNKLWKRMDKLEAEK---RILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLR 236
+ +W R D + IL I ++ PV+ ++ G +R
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN-----LTIHFGGEKG------KRIR 1685
Query: 237 SEVMRLRNQLANTQQEHTEKMERYVKDEKNVR------EENLRLQRKLQREVERREALCR 290
+ + + TEK+ + + +E + + L + Q AL
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEI-NEHSTSYTFRSEKGLLSATQFTQP------AL-- 1736
Query: 291 HLSESESSLE-MEEERHYNEIA----HS 313
+++ E ++ + A HS
Sbjct: 1737 -TLMEKAAFEDLKSKGLIPADATFAGHS 1763
Score = 34.6 bits (79), Expect = 0.073
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 34/124 (27%)
Query: 2 ADSASESDSNSMDGVALM-MPPSPV----TREQLQKRIESLQQQNRVLKVELETYKLQLR 56
A D ++ + P V ++E LQ +E + ++ L VE+
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-VEI-------- 1843
Query: 57 ALQEENKNLR-QTSV---NIQAKAEQEEEFISNTL----MKKIQALKKEKETLAHHYEQE 108
N N+ Q V +++A + ++N L ++KI + + +++L E+
Sbjct: 1844 V----NYNVENQQYVAAGDLRAL-----DTVTNVLNFIKLQKID-IIELQKSL--SLEEV 1891
Query: 109 EEFL 112
E L
Sbjct: 1892 EGHL 1895
Score = 28.5 bits (63), Expect = 5.6
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 25/66 (37%)
Query: 323 SSRPLSPGASMLTTKEPRCFACGQ-TTVMPIPPPVHSRPQRIK--------TP---LLSV 370
S+RPL+ L+ G V+ +P +++ P +
Sbjct: 5 STRPLT-----LSH--------GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD 51
Query: 371 EQPTSP 376
++PT+P
Sbjct: 52 DEPTTP 57
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 42.2 bits (99), Expect = 2e-04
Identities = 16/132 (12%), Positives = 46/132 (34%), Gaps = 5/132 (3%)
Query: 132 QTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKR 191
+ + + +IE L + ++E L + ++ E++ L + +
Sbjct: 26 ADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQ---HIKTIYPSEKQTLPQSIEQL 82
Query: 192 MDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQ 251
K + + + ++ ++ + D S I L+ ++ +L + +
Sbjct: 83 TQKSKKIIEEIIRYENTILAHENTIQQLT--DMHIMNSNKITQLKQKIAQLESHCQEPCK 140
Query: 252 EHTEKMERYVKD 263
+ E E +D
Sbjct: 141 DTAEIQETTGRD 152
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 39.9 bits (92), Expect = 0.001
Identities = 21/185 (11%), Positives = 67/185 (36%), Gaps = 5/185 (2%)
Query: 135 EQEQERVVNKLMRKIEKLEAETDAKQNNLEQ--LRREKVELENTLEQEQEALVNKLWKRM 192
+ L+ +++ + + N L Q +R+ K L++ +++ + ++
Sbjct: 50 VSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSC- 108
Query: 193 DKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQE 252
L+ E++IL+ + + D L + + +++ +VM + +++ + +
Sbjct: 109 --LKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDL 166
Query: 253 HTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEMEEERHYNEIAH 312
E + + E N + ++E + + L + + N
Sbjct: 167 QDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTEL 226
Query: 313 SMRLV 317
+ +
Sbjct: 227 TQNAL 231
Score = 37.9 bits (87), Expect = 0.005
Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 17/198 (8%)
Query: 18 LMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAE 77
+ + + + ++K +LQ + +++ + L+EE K L QA++
Sbjct: 71 FSLENNFLLQHNIRKSKRNLQDNFQEDPIQM--SMIIYSCLKEERKILENAQRFNQAQSG 128
Query: 78 QEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQE 137
+ + K++ + + + E E + L L +E +T++
Sbjct: 129 NIQSTVMLDKQKELDSKVRNVKDKVMCIEHEI--------KSLEDLQDEYDFKCKTLQNR 180
Query: 138 QERVVNKLMRKIEKLEAETDAKQNNLEQLRREKV----ELENTLEQEQEALVNK---LWK 190
+ ++ + L+ R+E V EL N E Q AL+N WK
Sbjct: 181 EHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWK 240
Query: 191 RMDKLEAEKRILQIKLDQ 208
R + LDQ
Sbjct: 241 RRQQSACIGGPPNACLDQ 258
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 39.5 bits (92), Expect = 0.002
Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 11/171 (6%)
Query: 30 LQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK 89
L+K + + Q + L+V L +L E+ + V Q AE +++ + L
Sbjct: 1926 LKK-LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQK-DARELQV 1983
Query: 90 KIQALKKEKETLAHHYEQE-EEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRK 148
++ KE + E+ R+ + E + + E + L +
Sbjct: 1984 QLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKS 2043
Query: 149 IEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEK 199
I + L RE +++ + + + +D L +E+
Sbjct: 2044 IATY-------KEEYATLIRETEQIKTESSKVKNKVDRS-IALLDNLNSER 2086
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 38.9 bits (91), Expect = 0.003
Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNT 86
R++ I Q+ R ++ + ++ + + + + N
Sbjct: 14 RDETGANIIRESQRRRFADPDIVD---AIIEADKKWRRTQFLTEASKKL--------INI 62
Query: 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLM 146
K + A KK KE E + + L E+ + Q + L
Sbjct: 63 CSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQL-----SKDLS 117
Query: 147 RKIEKLEAETDAKQNNLEQL 166
++ L E + ++L
Sbjct: 118 DQVAGLAKEAQQLEEERDKL 137
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 38.6 bits (89), Expect = 0.003
Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 24/204 (11%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQL-------RALQEENKNLRQTSVNIQAKAEQEE 80
E + +R Q++ L +E+ T + R QE L + + Q++AE+
Sbjct: 644 EPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKAR 703
Query: 81 EFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQER 140
+ + + E + + S +L + +E E E
Sbjct: 704 KELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE--- 760
Query: 141 VVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEK- 199
R + E E + LE + +L N ++ + + L + A
Sbjct: 761 ------RVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAG 814
Query: 200 RILQIKLDQP-------VSDPSSP 216
+Q+KL Q ++D SSP
Sbjct: 815 PEMQVKLLQSLGLKSTLITDGSSP 838
Score = 38.3 bits (88), Expect = 0.004
Identities = 20/189 (10%), Positives = 60/189 (31%), Gaps = 5/189 (2%)
Query: 15 GVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA 74
G + P + R +++ QN ++ ++ ++ + + R + I+
Sbjct: 605 GFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEI 664
Query: 75 KAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTI 134
+E + + Q + E + E E +RK E ++
Sbjct: 665 TTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE-----KARKELLELEAMSMAVEST 719
Query: 135 EQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDK 194
+ ++ + E + + L E +++ +E + +++
Sbjct: 720 GNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLEL 779
Query: 195 LEAEKRILQ 203
++ + L
Sbjct: 780 EVSKAQQLA 788
Score = 34.4 bits (78), Expect = 0.065
Identities = 29/183 (15%), Positives = 75/183 (40%), Gaps = 9/183 (4%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTL 87
++ + + K + +A+ +N L +SV++Q+ E ++ + L
Sbjct: 597 RIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQN-GLVVSSVDVQS-VEPVDQRTRDAL 654
Query: 88 MKKIQ-ALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERV-VNKL 145
+ +Q A++ + + E + L + +L E+ ++ E E+ R + +L
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRL-----ERQKILDQSEAEKARKELLEL 709
Query: 146 MRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIK 205
+E+ +AK + ++E E ++ Q + + +LE K++ +++
Sbjct: 710 EAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREME 769
Query: 206 LDQ 208
L
Sbjct: 770 LIY 772
Score = 30.9 bits (69), Expect = 0.94
Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 6/153 (3%)
Query: 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQA-KAEQEEEFIS 84
R +L+++ Q + + EL + A++ + +A + E E +
Sbjct: 684 ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQ 743
Query: 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNK 144
L + A++ E E +E E L QL E + +Q E ++
Sbjct: 744 AKLKAQALAIETEAELERVKKVREME-----LIYARAQLELEVSKAQQLANVEAKKFKEM 798
Query: 145 LMRKIEKLEAETDAKQNNLEQLRREKVELENTL 177
+ ++ + + L++TL
Sbjct: 799 TEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTL 831
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 38.0 bits (87), Expect = 0.005
Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 4/159 (2%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTL 87
++LQ + ++ R E + L++ + + QT + K ++ E
Sbjct: 438 QKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVK-- 495
Query: 88 MKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMR 147
+ QA K + EQ E L QLTE+ + +EQER + ++
Sbjct: 496 AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 555
Query: 148 KIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVN 186
+ E+L E Q ++ E +L+ + + + ++
Sbjct: 556 EQEQLLKE--GFQKESRIMKNEIQDLQTKMRRRKACTIS 592
Score = 36.1 bits (82), Expect = 0.019
Identities = 18/119 (15%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISN 85
Q + + +++ V +V+ E+ + + L E + Q + ++ + ++
Sbjct: 474 AILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 533
Query: 86 TLMKKIQALKKEKE-TLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVN 143
+ L KE+E TLA +++E+ L ++ + E L+ + + + ++
Sbjct: 534 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACTIS 592
Score = 34.9 bits (79), Expect = 0.040
Identities = 29/181 (16%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQ-LRALQEENKNLRQTSVNIQAKAEQEEEFISN 85
QL+K+ + +QN+ + + LQ + + EE S + ++
Sbjct: 385 AAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLK 444
Query: 86 TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLE------QTIEQEQE 139
+ + E + Y + +E +T+ + + LTE++ +E ++ + +
Sbjct: 445 KKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAK 504
Query: 140 RVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEK 199
+ + + +E + + Q +L+QL + L +EQE + + ++L E
Sbjct: 505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564
Query: 200 R 200
Sbjct: 565 F 565
Score = 29.2 bits (64), Expect = 3.1
Identities = 35/271 (12%), Positives = 96/271 (35%), Gaps = 14/271 (5%)
Query: 45 KVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHH 104
++E +A+ + + Q ++ + ++ + I+ + H
Sbjct: 319 LAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDH 378
Query: 105 YEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLE 164
Q+E L L +K + ++ E + ++ + E+++A +K
Sbjct: 379 LFQKE--LAAQLEKKRDDFCKQNQ--EASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYR 434
Query: 165 QLRREKVELENTLEQEQEALVNKLWKRMDKLEA----EKRILQIKLDQPVSDPSSPHDMN 220
++ +L+ +E + L++ ILQ + +
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494
Query: 221 NGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEK------NVREENLRL 274
++A + +H ++ + ++ Q + QEH +++ +++++ R L+L
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 554
Query: 275 QRKLQREVERREALCRHLSESESSLEMEEER 305
Q + Q E + R + L+ + R
Sbjct: 555 QEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 37.8 bits (86), Expect = 0.006
Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 6/153 (3%)
Query: 53 LQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFL 112
L RA E+ + T + + E+ T+ K A E E ++ + + + L
Sbjct: 45 LHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASL 104
Query: 113 TNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE 172
ND K+ +E + + ++ + RK +K L+++ K
Sbjct: 105 MNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQK------PWAKKLKEVEAAKKA 158
Query: 173 LENTLEQEQEALVNKLWKRMDKLEAEKRILQIK 205
++E+ A+ + + D +++ +++
Sbjct: 159 HHAACKEEKLAISREANSKADPSLNPEQLKKLQ 191
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 37.4 bits (86), Expect = 0.007
Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 30/271 (11%)
Query: 20 MPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQE 79
P S Q KR + RV +T + + R + VN+ +
Sbjct: 407 HPESVSIVLQDPKRPLTYTHLRRVWGQIWQTIRALKEDCARLLQGQRTSMVNLLRYNTEL 466
Query: 80 EEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQE 139
N++ + + LK + + + + E + + + + L E EQ
Sbjct: 467 S-KKKNSMTSECEQLKAKLDFFRSSIQIDLEKYSEQMEFGI----TSEKLLSAWREMEQA 521
Query: 140 RVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEK 199
+ R+++ L + A Q + L+R L K +D LE +
Sbjct: 522 VELCGREREVQALVDKMMALQTDSVDLQR-------------NPLGRKHRGTLDDLEEQA 568
Query: 200 RILQIKLDQPVSDPSSPHDMNN-----GDTASNLSTHIHSLRSEVMRL---RNQLANTQQ 251
R L +L + D +P D N+ + + + ++ + + +
Sbjct: 569 RDLYRRLRERPRDQRTPGDSNDMVRLLILAIQSFEKRVILIYDQLSKTVVCKRKALELSP 628
Query: 252 EHTEKMERYVKDEKNVREENLRLQRKLQREV 282
+ E M +DEK V +R Q K Q+E+
Sbjct: 629 KVKEVMNLMREDEKIV----VRRQEKRQQEL 655
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 36.9 bits (85), Expect = 0.009
Identities = 15/121 (12%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 21 PPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEE 80
P + L K+ ++++ R LK + + + + + V Q + + +
Sbjct: 82 PTGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDND 141
Query: 81 EFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQER 140
+S + K+ L ++ L + ++ + LE I + +
Sbjct: 142 IILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQK----LENAIATQTDY 197
Query: 141 V 141
Sbjct: 198 C 198
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 35.9 bits (82), Expect = 0.015
Identities = 21/173 (12%), Positives = 66/173 (38%), Gaps = 4/173 (2%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTL 87
+ L+ I ++ + E + L+EE L+ + + I ++
Sbjct: 21 DSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI-ASI 79
Query: 88 MKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMR 147
KK+ +K E+E + EE+ ++ ++ + +++ ++QE + +++
Sbjct: 80 QKKMSEIKSERELRS--LNIEEDIAKERSNQANREIENLQNEIKR-KSEKQEDLKKEMLE 136
Query: 148 KIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200
+ +N ++ ++ + + E E K++ +++ +
Sbjct: 137 LEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAK 189
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 36.1 bits (83), Expect = 0.021
Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 57 ALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDL 116
+ EE K L ++S+ +AK +FI T + + + ++E++ L
Sbjct: 909 EMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEAL 968
Query: 117 SRKLNQLTEEKYRLEQTIEQEQERV-----VNKLMRKIEKLEAETDAKQNNLEQLRREKV 171
++ N + R +T + + +N+ + K+ L + K+ + Q +
Sbjct: 969 IKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKIVSFI 1028
Query: 172 E 172
E
Sbjct: 1029 E 1029
Score = 30.7 bits (69), Expect = 0.98
Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 5/130 (3%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTL 87
Q + + E +++ R+++ L + + + + + + F
Sbjct: 902 RQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQ 961
Query: 88 MKKIQALKKE---KETLAHHYEQE--EEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVV 142
++ +AL KE E A Y + + + +LN+ + L + +++ V
Sbjct: 962 QREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVF 1021
Query: 143 NKLMRKIEKL 152
K++ IEK
Sbjct: 1022 QKIVSFIEKF 1031
Score = 28.0 bits (62), Expect = 6.7
Identities = 24/181 (13%), Positives = 64/181 (35%), Gaps = 17/181 (9%)
Query: 34 IESLQQQNRVLKV--ELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKI 91
IES +++ +K+ E + L+ E +++ E+ + + +
Sbjct: 769 IESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEK 828
Query: 92 QALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTE-----------EKYRLEQTIEQEQER 140
A + A Q+ ND+ + E + E + + QE
Sbjct: 829 FAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEI 888
Query: 141 VVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEA-LVNKLWKRMDKLEAEK 199
++ ++ I + + K +E+++R + ++L + LV ++ + +
Sbjct: 889 NLDYILGLIFEHNRQNKGKGEMIEEVKR---LIRSSLGNRAKEGLVVDFIQQTNLDDLPD 945
Query: 200 R 200
+
Sbjct: 946 K 946
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 34.8 bits (79), Expect = 0.043
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 12/146 (8%)
Query: 70 VNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYR 129
V+ ++ + L Q + E + L E ++ ++ + +
Sbjct: 7 VDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEY-----FIIQYQESLRIQAQFAQ 61
Query: 130 LEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKV----ELENTLEQEQEALV 185
L Q QE+ L +K LE + L+Q R E + L ++Q ++
Sbjct: 62 LGQLNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIIL 121
Query: 186 NK---LWKRMDKLEAEKRILQIKLDQ 208
+ WKR +L + LD
Sbjct: 122 DDELIQWKRRQQLAGNGGPPEGSLDV 147
Score = 34.4 bits (78), Expect = 0.065
Identities = 28/169 (16%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 22 PSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNL---RQTSVNIQAKAEQ 78
P+ V + + ++ + Q+ L++ + + +L+ LQ+ + Q S+ IQA+ Q
Sbjct: 2 PAGVLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQ 61
Query: 79 EEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQ 138
+ M + AL++++ +L ++E L + +L E+ + Q + ++Q
Sbjct: 62 LGQLNPQERMSRETALQQKQVSLETWLQRE----AQTLQQYRVELAEKHQKTLQLLRKQQ 117
Query: 139 ERVVNKLM---RKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEAL 184
+++ + ++ ++L + +L+ L+ +L + Q ++ +
Sbjct: 118 TIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQI 166
Score = 29.0 bits (64), Expect = 2.8
Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 18/157 (11%)
Query: 152 LEAETDAKQNNLEQLRREKVELEN---TLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208
+ + E+LR + EN L+Q QE + + ++ +++A+ L
Sbjct: 10 MSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQ-YQESLRIQAQFAQLG----- 63
Query: 209 PVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVR 268
+ + L SL + + R L + E EK ++ ++ + +
Sbjct: 64 ------QLNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQ 117
Query: 269 EENLRLQRKLQREVERREALCRHLSESESSLEMEEER 305
L + + +RR+ L + E SL++ +
Sbjct: 118 TIILDDE---LIQWKRRQQLAGNGGPPEGSLDVLQSW 151
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 34.8 bits (81), Expect = 0.044
Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 24 PVTREQLQKRIESLQQQNRVLKVEL-ETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEF 82
P + L+++ L+ + LK E + +L+A++ E L + ++A+ E+E E
Sbjct: 400 PEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREI 459
Query: 83 ISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRK--LNQLTEEKY----RLEQTIEQ 136
+ K++ + + + E E R+ LN+ E +Y +LE +E
Sbjct: 460 LR-----KLREAQHRLDEVRREIELAE--------RQYDLNRAAELRYGELPKLEAEVEA 506
Query: 137 EQERVVNKLMRKIE 150
E++ ++E
Sbjct: 507 LSEKLRGARFVRLE 520
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 34.5 bits (79), Expect = 0.046
Identities = 30/181 (16%), Positives = 69/181 (38%), Gaps = 8/181 (4%)
Query: 31 QKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKK 90
Q +E+LQ+ + + +++ Q+R LQE+ L+ +A Q+ E K
Sbjct: 144 QNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKS 203
Query: 91 IQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIE 150
+ + + + F + + + + + ++E + V LM +
Sbjct: 204 LLDACESRRVRLVDTGDKFRFF-SMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQ 262
Query: 151 KLEAETDAKQNNLEQLRREKVEL-------ENTLEQEQEALVNKLWKRMDKLEAEKRILQ 203
++AE DA+ ++ L ++++ L K + +DK E L+
Sbjct: 263 GIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLR 322
Query: 204 I 204
+
Sbjct: 323 L 323
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 32.1 bits (73), Expect = 0.062
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 6/30 (20%)
Query: 318 GSSPSSSRPLSPGASMLTTKEPRCFACGQT 347
GSS SS A C C +T
Sbjct: 1 GSSGSSGMKFQAPAR------ETCVECQKT 24
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 33.6 bits (77), Expect = 0.078
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 34 IESLQQQNRVLKVELETYK---LQLRALQEENKNLRQ 67
+++ +N+ LK LE ++ L++ENK+L++
Sbjct: 21 LKNTYTENQHLKERLEELAQLESEVADLKKENKDLKE 57
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 33.6 bits (77), Expect = 0.084
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQ 203
K++ +I K EA +++ L+ N +++ L+ + L+
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEI---------------YNSNNQKIVNLKEKVAQLE 45
Query: 204 IKLDQPVSDPSSPHDMNNGD 223
+ +P D HD+ D
Sbjct: 46 AQCQEPCKDTVQIHDITGKD 65
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.10
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISN 85
RE+ +KR++ L ++V++ E + + ++ Q N ++ F
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS-EQVEKNKINNRIADKAFYQQ 148
Score = 32.8 bits (74), Expect = 0.11
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 33 RIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQE-EEFISNTLMKKI 91
+ + L Q+ ++ E + +L+ L +K + Q + KA+++ EE+ +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQ---EWREKAKKDLEEW------NQR 126
Query: 92 QALKKEKETLAHHYEQEEEFLTN 114
Q+ + EK ++ ++ F
Sbjct: 127 QSEQVEK-NKINNRIADKAFYQQ 148
Score = 29.7 bits (66), Expect = 1.0
Identities = 15/82 (18%), Positives = 41/82 (50%), Gaps = 20/82 (24%)
Query: 121 NQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRRE-KVELENTLEQ 179
++LT+E + + E++++R +++L+A + + ++ R + K +LE ++
Sbjct: 78 DRLTQEPESIRKWREEQRKR--------LQELDAASKVME---QEWREKAKKDLEEWNQR 126
Query: 180 EQEALVNKLWKRMDKLEAEKRI 201
+ E +++K + RI
Sbjct: 127 QSE--------QVEKNKINNRI 140
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 33.0 bits (74), Expect = 0.18
Identities = 24/201 (11%), Positives = 72/201 (35%), Gaps = 2/201 (0%)
Query: 1 MADSASESDSNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQE 60
+ + + + + + +E+L++R LQ + L+ + + L++
Sbjct: 353 RSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLED 412
Query: 61 ENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYE--QEEEFLTNDLSR 118
E + ++ IQ + E ++ + A +K+ E A + + +
Sbjct: 413 EIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERAD 472
Query: 119 KLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLE 178
++ + R + L+ + + + QL+ K +L + +
Sbjct: 473 TDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCD 532
Query: 179 QEQEALVNKLWKRMDKLEAEK 199
+ +E ++K+ + + +K
Sbjct: 533 ETKETAMDKIHRENVRQGRDK 553
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain,
protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Length = 265
Score = 32.6 bits (73), Expect = 0.20
Identities = 35/250 (14%), Positives = 90/250 (36%), Gaps = 5/250 (2%)
Query: 23 SPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEF 82
SP TR L E + + + A E + TS ++ +Q
Sbjct: 16 SPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPL 75
Query: 83 ISN--TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQER 140
+ + +Q K + L+ + L + + + Q E + T+++ +
Sbjct: 76 GGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQI 135
Query: 141 VVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200
N I + + ++N ++++ E E T ++Q + + ++ L+ +K+
Sbjct: 136 ASNDHDAAINRYSRLSKKREN--DKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKK 193
Query: 201 ILQIK-LDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMER 259
I ++ L + S M + + L + ++ + V +R ++ + + + +E
Sbjct: 194 IALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIED 253
Query: 260 YVKDEKNVRE 269
+
Sbjct: 254 LEVASDPLYV 263
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 32.8 bits (75), Expect = 0.20
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 28/143 (19%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNT 86
RE +KR + ++++ E + R + N+ N
Sbjct: 20 RETQEKRFKDPGLVDQLV------------KADSEWRRCRFRADNLNKL--------KNL 59
Query: 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLM 146
K I K+KE + E L+ D + ++++ V +
Sbjct: 60 CSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKK--------VRLLID 111
Query: 147 RKIEKLEAETDAKQNNLEQLRRE 169
I K +AE + + RE
Sbjct: 112 EAILKCDAERIKLEAERFENLRE 134
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 32.6 bits (75), Expect = 0.22
Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 21/120 (17%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNT 86
L R L+ ++ + +LR L+E+ ++L E+
Sbjct: 54 ARALDLRKGELRSKDLPGIISTWQ---ELRQLREQIRSLE---------EEK------EA 95
Query: 87 LMKKIQALKKEKETLAHHYEQEEEFL---TNDLSRKLNQLTEEKYRLEQTIEQEQERVVN 143
+ + ++AL ++ + + + L ++ ++L L ++ +LE+ R+ N
Sbjct: 96 VTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPN 155
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I
methyltransferase, DNA binding, DNA BIND protein; 1.95A
{Thermoanaerobacter tengcongensis}
Length = 412
Score = 32.4 bits (74), Expect = 0.23
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 137 EQERVVNKL---MRKIEKLEAETDAKQNNLEQLR 167
EQ R+V L +++ L+ + L++L
Sbjct: 367 EQRRIVAYLDQIQQQVAALKRAQAETEAELKRLE 400
Score = 28.9 bits (65), Expect = 2.7
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 137 EQERVVNKL---MRKIEKLEAETDAKQNNLEQLRRE 169
EQ R+V K+ M ++ ++ Q + E L +
Sbjct: 176 EQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQT 211
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 31.7 bits (72), Expect = 0.40
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 137 EQERVVNKL---MRKIEKLEAETDAKQNNLEQLRR----EKVELENTLEQEQEALVNKLW 189
EQ+ + KL + +++ +A + L++ R+ V + T + + ++
Sbjct: 164 EQKIIAEKLDTLLAQVDSTKARFEQIPQILKRFRQAVLGGAVNGKLTEKWRNFEPQHSVF 223
Query: 190 KRMDKLE 196
K+++
Sbjct: 224 KKLNFES 230
Score = 29.4 bits (66), Expect = 2.1
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 136 QEQERVVNKL---MRKIEKLEAETDAKQNNLEQLR 167
+EQ +V ++ + +E + + + L
Sbjct: 376 KEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLT 410
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 31.8 bits (72), Expect = 0.43
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 2/103 (1%)
Query: 285 REALCRHLSESESSLEMEEERHYNEIAHSMRLVGSSPSSSRPLSPGASMLTTKEPRCFAC 344
REA+ + + + +++ ++ + S + P + A M +
Sbjct: 323 REAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQM--KEMMAMMQK 380
Query: 345 GQTTVMPIPPPVHSRPQRIKTPLLSVEQPTSPEGAPTPTLGSP 387
Q PP ++ P + P Q P+G P P
Sbjct: 381 MQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPP 423
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 31.3 bits (70), Expect = 0.45
Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 6/147 (4%)
Query: 53 LQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFL 112
L RA E+ + T + + E+ T+ K A E E ++ + + + L
Sbjct: 52 LHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASL 111
Query: 113 TNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE 172
ND K+ +E + + ++ + RK +K L+++ K
Sbjct: 112 MNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQK------PWAKKLKEVEAAKKA 165
Query: 173 LENTLEQEQEALVNKLWKRMDKLEAEK 199
++E+ A+ + + D +
Sbjct: 166 HHAACKEEKLAISREANSKADPSLNPE 192
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 31.2 bits (70), Expect = 0.48
Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 132 QTIEQEQERVVNKLMRKIEKLEAE------TDAKQNNLEQLRREKVELENTLEQEQEALV 185
+ Q+ V +LM IE L E T+ + +++ + V + +++ +++L+
Sbjct: 185 RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQSLI 244
Query: 186 NKLWKRMDKLEAEKR 200
+ + +
Sbjct: 245 KYMETQRSYTALAEA 259
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 31.0 bits (70), Expect = 0.48
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 88 MKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMR 147
M + K T ++E L++ S + + L +++ +EQ R ++
Sbjct: 1 MASLNCHDKCSTTTQSDINLKDELLSS-TSIECRPGND----LLESLHKEQNRWYSETKT 55
Query: 148 KIEKLE 153
+ +
Sbjct: 56 FSDSSQ 61
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 31.5 bits (71), Expect = 0.50
Identities = 34/210 (16%), Positives = 84/210 (40%), Gaps = 29/210 (13%)
Query: 1 MADSASESD--SNSMDGVALMMPPSPVTREQL-----QKRIESLQQQNRVLKVELE---- 49
A+ +ES+ S ++DG+ S +T E Q + ++ + L
Sbjct: 34 AAERFAESEIGSAAIDGLVQGSVHSIITGESYGESVKQAVLLNVLGSGEEIPDPLSPGER 93
Query: 50 TYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEE 109
+ +L+ L++E +N ++ +E L + + E + E E+
Sbjct: 94 GIQAKLKELEDEQRNELV----RLKYNDKIKEKFGKELEEVYNFMNGE-----ANAEIED 144
Query: 110 EFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRRE 169
E + L++ + I E++ + +L ++K E + + + R+
Sbjct: 145 EKQFDILNKAVTSY--------NKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRD 196
Query: 170 KVE-LENTLEQEQEALVNKLWKRMDKLEAE 198
K++ L+N +E E++ + + + + + A+
Sbjct: 197 KIDALKNAIEVERDGMQEEAIQEIAGMTAD 226
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 31.4 bits (70), Expect = 0.50
Identities = 27/138 (19%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 84 SNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVN 143
S++L I + + + A++ + ++ DL ++ L + Q I+ Q+ V
Sbjct: 83 SHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRA 142
Query: 144 KLMRKIEKLEAETDAK----QNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEK 199
+L+ +++LE + D K + + + +V+L+ E +Q+ L + K + +
Sbjct: 143 QLV-DMKRLEVDIDIKIRSCRGSCSRALAREVDLK-DYEDQQKQLEQVIAKDLLPSRDRQ 200
Query: 200 RILQIKLDQPVSDPSSPH 217
+ IK +PV D +
Sbjct: 201 HLPLIK-MKPVPDLVPGN 217
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 30.7 bits (70), Expect = 0.54
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEEN 62
V +L K +E ++ + + E+E K + L +
Sbjct: 25 VEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADI 62
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding,
kinetoch replication-replication complex; 3.05A
{Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Length = 190
Score = 30.5 bits (68), Expect = 0.62
Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 27 REQLQKR-------IESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQE 79
+ ++++ + +L +N VL +L+T +++ LQ++ +L ++ + Q+
Sbjct: 8 KNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67
Query: 80 EEFISNTL 87
E
Sbjct: 68 AENSEVIK 75
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 31.0 bits (71), Expect = 0.63
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 55 LRALQEENKNLRQTSVNIQAKAEQ--EEEFISNTLMKKIQALKKEKETLAHHYEQEEEFL 112
LR + EN R+ + K E+ EEE + + ++++ LK+ +A + E
Sbjct: 289 LRVIARENLERRRKEI---PKVEKLIEEELST--VEEELEKLKER-RLVADVAKSLHEIK 342
Query: 113 TNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRK-IEKL-EAETDAKQNNLEQLRR 168
+L R L +L E ++ E +L+ + E + ++ LRR
Sbjct: 343 DRELERALRRLKTG--DPENVLQDFAEAYTKRLINVLTSAIMELPDEYRRAASRALRR 398
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 28.8 bits (64), Expect = 0.65
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 318 GSSPSSSRPLSPGASMLTTKEPRCFACGQT 347
GSS SS + GA C CG+
Sbjct: 1 GSSGSSGQHQEAGAG------DLCALCGEH 24
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 29.5 bits (66), Expect = 0.66
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQ 203
K +K K + + K+ L + RR+ + +++ E + +LW + +L+ EK
Sbjct: 11 KADQKRGKKQTARETKKKVLAE-RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69
Query: 204 IKL 206
++
Sbjct: 70 EQI 72
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 30.9 bits (71), Expect = 0.67
Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 24/121 (19%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNT 86
RE+ E L +++ L ++ ++ L + + + + ++++ N
Sbjct: 8 REKPDYVKERLATRDKELVSLVD----KVLELDKRRREIIKRLEALRSE--------RNK 55
Query: 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLM 146
L K+I LK+E + T ++ ++ +L EE RLE+ + + +E + N L+
Sbjct: 56 LSKEIGKLKREGKD------------TTEIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103
Query: 147 R 147
Sbjct: 104 W 104
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 29.6 bits (66), Expect = 0.67
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 144 KLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQ 203
+ RK K + E + K+ L + RR+ + +++ E + +LW+ + LEAEK LQ
Sbjct: 11 QTERKSGKRQTEREKKKKILAE-RRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69
Query: 204 IKLDQ 208
K Q
Sbjct: 70 EKFKQ 74
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 31.0 bits (69), Expect = 0.72
Identities = 25/191 (13%), Positives = 69/191 (36%), Gaps = 20/191 (10%)
Query: 21 PPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEE 80
P+ + Q+ +E Q R +LE + LQ++ +T ++++ + ++
Sbjct: 5 HPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKT---LKSQGDMQD 61
Query: 81 EFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQER 140
L +++ Q+ E + L + + E L +E Q+
Sbjct: 62 -------------LNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKT 108
Query: 141 VVNKLM---RKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEA 197
+ ++ + ++ +++ L++L L + Q ++ + KL + K+
Sbjct: 109 LTDEELADWKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQ-QIKKLEELQQKVSY 167
Query: 198 EKRILQIKLDQ 208
+ +
Sbjct: 168 KGDPIVQHRPM 178
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.92
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 13/35 (37%)
Query: 180 EQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPS 214
E++AL K KL+A +KL S P+
Sbjct: 18 EKQAL-----K---KLQA-----SLKLYADDSAPA 39
Score = 29.1 bits (64), Expect = 1.6
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 361 QRIKTPLLSVEQPTSPEGAPTPTLGSPMD 389
Q +K L + + + + AP + + M+
Sbjct: 20 QALKK-LQASLKLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 3.6
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 22/51 (43%)
Query: 283 ERREALCRHLSESESSLEMEEERHYNEIAHSMRLVGSSPSSSRPLSPGASM 333
E++ L + ++SL++ Y + S+ L+ A+M
Sbjct: 18 EKQA-----LKKLQASLKL-----Y------------ADDSAPALAIKATM 46
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 30.1 bits (67), Expect = 0.92
Identities = 9/83 (10%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 104 HYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNL 163
H+ + + + ++ +L ++ ++ +L +++++ T +
Sbjct: 134 HFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKL-ERLEKEVDEDTTVTIPSAVYV 192
Query: 164 EQLRREKVELENTLEQEQEALVN 186
QL + ++E E E +
Sbjct: 193 AQLYHQVSKIEWEYECEPGMVKG 215
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 30.6 bits (68), Expect = 0.95
Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 8/135 (5%)
Query: 53 LQLRALQEEN--KNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEE 110
Q RA E+ + L + + E+ ++ TL K A E L+ + + E
Sbjct: 43 FQERARIEKAYAQQLADWARKWRGAVEKGPQY--GTLEKAWHAFFTAAERLSELHLEVRE 100
Query: 111 FLTNDLSRKLNQLTEEKYRLEQTIE----QEQERVVNKLMRKIEKLEAETDAKQNNLEQL 166
L S ++ + + E K + K E +A + +
Sbjct: 101 KLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTA 160
Query: 167 RREKVELENTLEQEQ 181
R+++ + +
Sbjct: 161 RKDEKTAQTRESHAK 175
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 30.4 bits (67), Expect = 1.1
Identities = 35/246 (14%), Positives = 87/246 (35%), Gaps = 15/246 (6%)
Query: 23 SPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQ---- 78
SP TR L E + + + A E + TS ++ +Q
Sbjct: 16 SPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPL 75
Query: 79 --EEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQ 136
++E +S+TL + + + + L+ + L + + + Q E + T+++
Sbjct: 76 GGDDEVMSSTLQQFSKVIDE----LSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKE 131
Query: 137 EQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEAL--VNKLWKRMDK 194
+ N I + + ++N+ + + + +Q Q + L K
Sbjct: 132 VFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYK 191
Query: 195 LEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHT 254
+ +L+ L + S M + + L + ++ + V +R ++ + +
Sbjct: 192 KKIA--LLEPLLGYMQAQISFFK-MGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQ 248
Query: 255 EKMERY 260
+ +E
Sbjct: 249 QTIEDL 254
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.2 bits (67), Expect = 1.1
Identities = 16/118 (13%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 65 LRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLT 124
L + N + + + + L + + ++ + + E+ + K+ +L
Sbjct: 295 LAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLK 354
Query: 125 EEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQE 182
+ + L++ EQ + + +E E + K+ E + + LEQ+
Sbjct: 355 DSEAELQRRHEQ--------MKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNS 404
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 30.2 bits (67), Expect = 1.3
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 118 RKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKV----EL 173
+ L L +E +T++ + ++ + L+ R+E V EL
Sbjct: 26 KSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIEL 85
Query: 174 ENTLEQEQEALVNK---LWKRMDKLEAEKRILQIKLDQ 208
N E Q AL+N WKR + LDQ
Sbjct: 86 LNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQ 123
Score = 27.9 bits (61), Expect = 6.5
Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 2/176 (1%)
Query: 31 QKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKK 90
QK ++S + + + +E L LQ+E +T N + + +
Sbjct: 4 QKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLL 63
Query: 91 IQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIE 150
++ + + + L N N L ++ + Q+ + ++
Sbjct: 64 LKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWK-RRQQSACIGGPPNACLD 122
Query: 151 KLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206
+L+ +L+Q+R++ +LE LEQ+ + + K L L +L
Sbjct: 123 QLQNWFTIVAESLQQVRQQLKKLEE-LEQKYTYEHDPITKNKQVLWDRTFSLFQQL 177
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 29.9 bits (66), Expect = 1.5
Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 6/147 (4%)
Query: 53 LQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFL 112
L RA E+ + T + + E+ T+ K A E E ++ + + + L
Sbjct: 52 LHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASL 111
Query: 113 TNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVE 172
ND K+ +E + + ++ + RK +K L+++ K
Sbjct: 112 MNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQK------PWAKKLKEVEAAKKA 165
Query: 173 LENTLEQEQEALVNKLWKRMDKLEAEK 199
++E+ A+ + + D +
Sbjct: 166 HHAACKEEKLAISREANSKADPSLNPE 192
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 29.9 bits (66), Expect = 1.7
Identities = 17/178 (9%), Positives = 55/178 (30%), Gaps = 2/178 (1%)
Query: 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISN 85
T K +++ + + ++TY + + Q Q
Sbjct: 533 TLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQ 592
Query: 86 TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKL 145
LM++ ++ + Q + K+ ++ + T+E +Q + +
Sbjct: 593 ALMEEHARQQQNERLRKQFGAQANVIG-PWIQTKMEEIGRISIEMHGTLE-DQLNHLRQY 650
Query: 146 MRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQ 203
+ I + + D + + +Q++ + E + + + + ++
Sbjct: 651 EKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVE 708
Score = 29.5 bits (65), Expect = 2.1
Identities = 21/180 (11%), Positives = 59/180 (32%), Gaps = 3/180 (1%)
Query: 6 SESDSNSMDGVALMMPPSPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNL 65
++D + + S + + + + ++ + + ++ L
Sbjct: 535 PDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQAL 594
Query: 66 RQTSVNIQAKAEQEEEFIS--NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQL 123
+ Q ++F + N + IQ +E ++ E N L + +
Sbjct: 595 MEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSI 654
Query: 124 TEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEA 183
K +++Q +E + +++ L+ + + + EQL N +E +
Sbjct: 655 VNYKPKIDQ-LEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILT 713
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 29.9 bits (68), Expect = 1.8
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 32/121 (26%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNT 86
+ +KR +S++ + ++ A +E LR K N+
Sbjct: 19 KASQKKRGDSVELVDEII------------AEYKEWVKLRFDLDEHNKK--------LNS 58
Query: 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLM 146
+ K+I K KE DL + +L+ EK + + + + + +K+
Sbjct: 59 VQKEIGKRFKAKED------------AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106
Query: 147 R 147
+
Sbjct: 107 Q 107
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 29.5 bits (66), Expect = 1.9
Identities = 20/172 (11%), Positives = 60/172 (34%), Gaps = 6/172 (3%)
Query: 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQA 93
+++L+++++ L+ EL ++ ++ + + K L + + + +Q + + Q
Sbjct: 144 VQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQL 203
Query: 94 LKKEKETL-----AHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRK 148
+ L + E ++ K+ + E Y Q +
Sbjct: 204 AAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETD 263
Query: 149 IEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200
+ + N E L ++ + + + L ++K A+++
Sbjct: 264 FTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGL-KGKVSDLEKAAAQRK 314
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 29.7 bits (67), Expect = 2.0
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 317 VGSSPSSSRPLSPGASMLTTKEP--RCFACGQTTVMPIPPPVHSRPQRIKTPLLSVEQPT 374
+ SS + S +S + R G + + S Q P + + PT
Sbjct: 5 ISSSDNLSNAVSATDDNASRTPNLNRRALVGGGVGLAARGALASGLQAATLPAGASQVPT 64
Query: 375 SPEGAPTPTLGSPMDISK 392
+P G P P PM +
Sbjct: 65 TPAGRPMPYAIRPMPEDR 82
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 29.7 bits (66), Expect = 2.0
Identities = 27/201 (13%), Positives = 71/201 (35%), Gaps = 8/201 (3%)
Query: 108 EEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLR 167
+EF + S L + +++ ++ V + + + + L++++
Sbjct: 3 WDEFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIK 62
Query: 168 REKVELE--NTLEQEQEALVNKLWKRMDKLEAEKRILQ------IKLDQPVSDPSSPHDM 219
+ E LE+E E L+ ++RMD L + I+Q + ++ +
Sbjct: 63 ADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWS 122
Query: 220 NNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQ 279
+ + S++ +L +QE + + + LQ +
Sbjct: 123 DKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWS 182
Query: 280 REVERREALCRHLSESESSLE 300
++ + + HL E+ + +
Sbjct: 183 WILQITKCIDVHLKENAAYFQ 203
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 29.5 bits (67), Expect = 2.1
Identities = 17/117 (14%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Query: 27 REQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNT 86
RE + L ++ + KV+ ++ L E + + ++ + N
Sbjct: 8 RENPELVKNDLIKRGELEKVKWVD---EILKLDTEWRTKLKEINRLRHE--------RNK 56
Query: 87 LMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVN 143
+ +I +K+ E + + + ++ +++ +L E L++ I+ R+ N
Sbjct: 57 IAVEIGKRRKKGEPVDELLAK-----SREIVKRIGELENEVEELKKKIDYYLWRLPN 108
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 29.3 bits (66), Expect = 2.1
Identities = 23/237 (9%), Positives = 74/237 (31%), Gaps = 25/237 (10%)
Query: 57 ALQEENKNLRQTSVN--IQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEEFLTN 114
L + +LR + I +E + + Y++ + +
Sbjct: 49 VLGVRSNHLRSNILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYV-KAFYQKGNKLVE- 106
Query: 115 DLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELE 174
L R +++ + Y+++ ++ + I Q ++EQ+ +
Sbjct: 107 -LMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVEL 165
Query: 175 NTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHS 234
+ + +E + ++L+ + L + + + + + +
Sbjct: 166 SRMFEEVSGSIQYKK-EYEELKEKIEKLSKSATESIKN------------RRRIHGELKT 212
Query: 235 LRSEVMRLRNQLANTQQEHTEKMERY------VKDEKNVREENLRLQRKLQREVERR 285
+S + + Q + E R+ + K ++ L K++++ +
Sbjct: 213 YKSPGLEVLFQGPRG-SRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKEL 268
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 29.4 bits (65), Expect = 2.2
Identities = 23/151 (15%), Positives = 57/151 (37%), Gaps = 5/151 (3%)
Query: 242 LRNQLANTQQEHTEKMERYVKDEKNVREENLRLQRKLQREVERREALCRHLSESESSLEM 301
LR+++ +++ E+++R +KNVR++ + ++R L+ +++ + C+ ++
Sbjct: 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKR-LEVDIDIKIRSCKGSCSRALEHKV 176
Query: 302 EEERHYNEIAHSMRLVGSS--PSSSRPLSPGASMLTTKE--PRCFACGQTTVMPIPPPVH 357
+ E + N+ +++ + PS P M T PR F +
Sbjct: 177 DLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALL 236
Query: 358 SRPQRIKTPLLSVEQPTSPEGAPTPTLGSPM 388
Q + + + G
Sbjct: 237 EMQQTKMVLETFGGDGHARGDSVSQGTGLAP 267
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 27.5 bits (61), Expect = 2.7
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Query: 89 KKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRK 148
KK+Q LK +KE EQ E + + ++ E + +L ++
Sbjct: 9 KKMQMLKLDKENALDRAEQ----------------AEADKKAAEERSKQLEDDIVQLEKQ 52
Query: 149 IEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAE 198
+ E D L + + + + E+ V L +R+ +E E
Sbjct: 53 LRVTEDSRDQVLEELHK-SEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A
{Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Length = 300
Score = 29.0 bits (66), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 87 LMKKIQALKKEKET--LAHHYEQEE 109
L+++I LK+E+ LAH+Y+ E
Sbjct: 3 LVEEILRLKEERNAIILAHNYQLPE 27
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 29.0 bits (65), Expect = 2.9
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 350 MPIPPPVHSRPQRIKTPLLSVEQPTSPEGAPTPTLG 385
P P V S+ + L + P + G L
Sbjct: 4 FPEPKVVRSQGGLLSLKLSATPTPLAIAGQRATLLT 39
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 29.2 bits (64), Expect = 3.0
Identities = 24/161 (14%), Positives = 62/161 (38%), Gaps = 18/161 (11%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTL 87
+ ++ Q + +K ++++ + L + L + + + N L
Sbjct: 499 TNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVL 558
Query: 88 ---MKKIQALKKEKETLAHHYEQ-------------EEEFLTNDLSRKLNQLTEEKYRLE 131
+ + +KKE+E L + + ++ + N+ + + +L L
Sbjct: 559 KSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLT 618
Query: 132 QTIEQEQERVVNKLMRKIEKLEAE-TDAKQNNLEQLRREKV 171
+++ ++ L++ I+ E + KQ+N E RE+V
Sbjct: 619 TKVQESLKK-QEGLLKNIQVSHQEFSKMKQSNNEANLREEV 658
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 28.3 bits (63), Expect = 3.1
Identities = 8/68 (11%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 116 LSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEA----ETDAKQNNLEQLRREKV 171
++ K+ Q + K +T+ + + E++ + LE ++ E+
Sbjct: 1 MASKIFQYNQHKQETNETLNHHNCSNMQRAFNLKEEMLTNKSIDCRPSNETLEYIKGEQH 60
Query: 172 ELENTLEQ 179
+ ++ +
Sbjct: 61 DRWDSKTK 68
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 28.3 bits (63), Expect = 3.5
Identities = 8/50 (16%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 268 REENLRLQRKLQREVERREALCRHLSESESSLEMEEERHYNEIAHSMRLV 317
+E++ + K + E + + + +S ++ + + E+ H + LV
Sbjct: 183 KEQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAK-IRELEHKIALV 231
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 28.8 bits (64), Expect = 3.5
Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 15/203 (7%)
Query: 90 KIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKL-MRK 148
KI+ E L+ Y E+ +L E + ++ + + +L +
Sbjct: 563 KIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN 622
Query: 149 IEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQ 208
+ + + + +E + E +N + E E+ + +
Sbjct: 623 KPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENV 682
Query: 209 PVSDPSSPHDMNNGDTASNLSTHIHSLRSE-VMRLRNQLANTQQEH-----TEKMERYVK 262
L I SL E +L Q + E + +
Sbjct: 683 INGPEELYGTYEYL-----LGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNT 737
Query: 263 DEKNVREENLRLQRKLQREVERR 285
D K Q LQR+ E R
Sbjct: 738 DLKAFEVG---YQEFLQRDAEAR 757
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical,
metal transport; NMR {Homo sapiens}
Length = 108
Score = 27.1 bits (59), Expect = 3.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 134 IEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWK 190
+ E+ R MR I K A D N LE + + + + +Q A+++K WK
Sbjct: 43 VPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWK 99
>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis
akajei} SCOP: a.1.1.2 PDB: 1cg8_B*
Length = 141
Score = 27.8 bits (61), Expect = 4.1
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 177 LEQEQEALVNKLWKRMDKLEAEKRILQ---------IKLDQPVSDPSSPHDMNNGDTASN 227
L ++QE + +WK +D + + L+ +L + S +D+ A
Sbjct: 3 LSEDQEHYIKGVWKDVDHKQITAKALERVFVVYPWTTRLFSKLQGLFSANDIGVQQHADK 62
Query: 228 LSTHIHSLRSEVMRLRNQLANTQQEHTEK 256
+ + ++ ++ N +H E
Sbjct: 63 VQRALGEAIDDLKKVEINFQNLSGKHQEI 91
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins,
DNA breaks, DOUB stranded, DNA repair, DNA repair
enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB:
3qg5_C
Length = 379
Score = 28.2 bits (63), Expect = 5.1
Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 24/130 (18%)
Query: 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFIS 84
+ L+ +S + ++V E L L E NL + + + E+
Sbjct: 274 IDTSALKSIRDSCRNFPGYVRVVYEEDSGILPDLMGEIDNLVKIERKSRREIEEVLRESP 333
Query: 85 NTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNK 144
+++ L + E F +E + + ++ +++++
Sbjct: 334 EEFKEELDKL-----------DYFELF-------------KEYLKKREENHEKLLKILDE 369
Query: 145 LMRKIEKLEA 154
L+ +++K EA
Sbjct: 370 LLDEVKKSEA 379
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; structural genomics, target 6426D,
PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A
3t0c_A
Length = 755
Score = 28.3 bits (63), Expect = 6.1
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 41 NRVLKVELETY---KLQLRALQEENKNLRQTSVNIQAKA 76
NR K +E Y K+ L K LR + Q A
Sbjct: 17 NREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLNA 55
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 27.6 bits (61), Expect = 7.2
Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 22/189 (11%)
Query: 34 IESLQQQNRVLKVELETYKLQ-LRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQ 92
+ L+ + R E + + + + L + A + ++ ++ ++
Sbjct: 145 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLE 204
Query: 93 ALKKEKETLA-----HHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMR 147
+ + LA H Y + + K +L E+ T E R
Sbjct: 205 LIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAES--------FHR 256
Query: 148 KIEKLEAETDAKQNNLEQLRREKVELENTLE-------QEQEALVNKLWKRM-DKLEAEK 199
E + ++Q + L+ Q +E V+ W+ + D +
Sbjct: 257 VHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRR 316
Query: 200 RILQIKLDQ 208
L D+
Sbjct: 317 TQLVDTADK 325
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 27.8 bits (61), Expect = 7.3
Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 12/177 (6%)
Query: 31 QKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMK- 89
R E L L E Q R + E K + ++ ++K + + +
Sbjct: 629 GLRKEWLVGM---LGAESTKLNNQARFILE--KIQGKITIENRSKKDLIQMLVQRGYESD 683
Query: 90 KIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKI 149
++A K+ +E A E + + + + Y L ++ + V +L+++
Sbjct: 684 PVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQR 743
Query: 150 EKLEAE------TDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKR 200
+ E E L EL+ QE+E
Sbjct: 744 DAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDGAPGFSSISAHHHHHHH 800
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.8 bits (61), Expect = 7.3
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 27 REQLQKRIESLQQQNRVLKVELETY----KLQLRALQEENKNLRQTSVNIQAKAEQEEEF 82
R +L++ + ETY L LQ++ + +RQ V + E E
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAE--- 356
Query: 83 ISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQE 139
L + + L ++ + L ++ E+ L K L +E +Q +
Sbjct: 357 ----LKEAEKELHEKFDRLKKLHQDEK----KKLEDKKKSLDDEVNAFKQRKTAAEL 405
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 7.4
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 23 SPVTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEF 82
+ V +L K I +L+ + ++ ELE K Q + A
Sbjct: 290 AKVNMTELDKEISTLRSGLKAVETELEYQKSQ---PPQPGDKFVSVVSQFITVASFS--- 343
Query: 83 ISNTLMKKIQALKKEKETLAHHY-EQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERV 141
+ + + K H+ E+ + ++ +Q + +Q E +++
Sbjct: 344 -FSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKKK 402
Query: 142 VNKLMRKIEKLEAETDAKQNNLEQLRREKVELENT 176
+ R ++EA+ ++ ++R+ K E +
Sbjct: 403 EEEERRA--RMEAQLKEQRERERKMRKAKENSEES 435
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 26.4 bits (59), Expect = 7.5
Identities = 15/87 (17%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQ---EENKNLRQTSVN--IQAKAEQEEEF 82
+L+++++ L ++VE + + L+ +E R+ + N + + +
Sbjct: 23 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS 82
Query: 83 ISNT-LMKKIQALKKEKETLAHHYEQE 108
++ L +K+++L++E L +E+E
Sbjct: 83 LARLDLERKVESLQEEIAFLKKLHEEE 109
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 27.3 bits (60), Expect = 8.0
Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 12/137 (8%)
Query: 81 EFISNTLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIE----- 135
E +++ ++ + +E + + + QL K R E+ +
Sbjct: 97 ENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRA 156
Query: 136 ----QEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKR 191
++ + +N +EK + + E + + + EQ +
Sbjct: 157 QQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPN 216
Query: 192 -MDKLEA--EKRILQIK 205
K++ E+RI+++
Sbjct: 217 IFQKIQEMEERRIVRMG 233
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 27.3 bits (60), Expect = 8.6
Identities = 24/170 (14%), Positives = 66/170 (38%), Gaps = 1/170 (0%)
Query: 34 IESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQA 93
+ES + ++ + +E ++ L+ + + E L+ +
Sbjct: 55 VESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRN 114
Query: 94 LKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLE 153
++ +TL + + L ++ +++ + ++ +++ +LMR++E+ E
Sbjct: 115 QERHLDTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYH-AELMRELEQKE 173
Query: 154 AETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQ 203
A Q EQL E T+E + A+ + + + ++ +Q
Sbjct: 174 ESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQ 223
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin,
intermediate R/T quaternary structure, oxidation
pathway, heme, iron, metal-binding; HET: HEM; 1.25A
{Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B*
3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B*
2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Length = 146
Score = 26.7 bits (58), Expect = 9.7
Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 177 LEQEQEALVNKLWKRMDKLEAEKRIL----------QIKLDQPVSDPSSPHDMNNGDTAS 226
++ ++++ ++ MD + + L Q + ++ M+N + A+
Sbjct: 3 WTDKERSIISDIFSHMDYDDIGPKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAA 62
Query: 227 NLSTHIHSLRSEVMRLRN---QLANTQQEHTEK 256
+ +H L + + N + H+EK
Sbjct: 63 HGIKVLHGLDRGMKNMDNIADAYTDLSTLHSEK 95
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 27.0 bits (59), Expect = 9.9
Identities = 13/113 (11%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Query: 102 AHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERV-VNKLMRKIEKLEAETDAKQ 160
+ + + L + E+ + + ++ + + K+ ++ ++E + D
Sbjct: 119 EFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGKVPQRAGEVERDLDKAD 178
Query: 161 NNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDP 213
+ + L + L++ + E + ++++ +L A + ++L V+ P
Sbjct: 179 SMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGVAAP 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.123 0.326
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,483,900
Number of extensions: 319162
Number of successful extensions: 1863
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1552
Number of HSP's successfully gapped: 472
Length of query: 393
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 297
Effective length of database: 4,021,377
Effective search space: 1194348969
Effective search space used: 1194348969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (27.1 bits)