RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15959
(393 letters)
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 29.9 bits (67), Expect = 0.24
Identities = 18/138 (13%), Positives = 45/138 (32%), Gaps = 7/138 (5%)
Query: 47 ELETYKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYE 106
L QL Q + + ++Q ++A + E + ++ + +
Sbjct: 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKT-----LSDIQGKDGSETLVPV 56
Query: 107 QEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQL 166
F+ +L + I++ E + + + +LE+ NL +
Sbjct: 57 GAGSFIKAELKDTSEVIMSVG--AGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAI 114
Query: 167 RREKVELENTLEQEQEAL 184
++L E+ A+
Sbjct: 115 TDIMMKLSPQAEELLAAV 132
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 30.3 bits (67), Expect = 0.41
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 30 LQKRIESLQQQNRVLKVELETYKLQLRALQEENKNL 65
L++R E L + N ELET K QL E K L
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKEL 36
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 310
Score = 29.9 bits (67), Expect = 0.53
Identities = 14/83 (16%), Positives = 40/83 (48%)
Query: 116 LSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRREKVELEN 175
L + ++ + ++++ +E+ +E++ + R+ + + +D K LE+ E
Sbjct: 161 LHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVE 220
Query: 176 TLEQEQEALVNKLWKRMDKLEAE 198
+ + EQ+ L +++R + E
Sbjct: 221 SAQSEQKNLFLVIFQRFIMILTE 243
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 29.2 bits (65), Expect = 0.65
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 92 QALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEK 151
QA K K+ L +++ +E + + + ++ E +R+ + +I K
Sbjct: 4 QAAKVSKKELNSNHDGADETSEKEQQEAIEHI--------DEVQNEIDRLNEQASEEILK 55
Query: 152 LEAETDAKQNNLEQLRREKVE 172
+E + + + Q R E +
Sbjct: 56 VEQKYNKLRQPFFQKRSELIA 76
>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 298
Score = 29.2 bits (65), Expect = 0.75
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 87 LMKKIQALKKEKET--LAHHYEQEE 109
L+++I LK+E+ LAH+Y+ E
Sbjct: 3 LVEEILRLKEERNAIILAHNYQLPE 27
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.4 bits (65), Expect = 0.79
Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 13/174 (7%)
Query: 29 QLQKRIESLQQQNRVLKVELETYKLQLRALQE-ENKNLRQTSVNIQAKAEQ--EEEFISN 85
+L+ + + L+ E+E Y Q++ ++ K L T+ A ++ F
Sbjct: 583 RLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRF 642
Query: 86 TLMKKIQALKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKYRLEQTIEQEQERVVNKL 145
K E + + + ++ TE + + E ++
Sbjct: 643 NKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMR 702
Query: 146 MRKIEKLEAETDAKQNNLEQLRREKVELENTLEQEQEALVNKLWKR-MDKLEAE 198
+ + K + +L ++K E E LE + +W + E
Sbjct: 703 IWSLTKERYQ---------KLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVG 747
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.6 bits (63), Expect = 1.3
Identities = 26/150 (17%), Positives = 57/150 (38%), Gaps = 2/150 (1%)
Query: 51 YKLQLRALQEENKNLRQTSVNIQAKAEQEEEFISNTLMKKIQALKKEKETLAHHYEQEEE 110
Y+L ++ LQ+ K + E + ++ + L+ ++ E E E
Sbjct: 150 YRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVE 209
Query: 111 FLTND-LSRKLNQLTEEKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQNNLEQLRRE 169
+ + L E + + EQ +EQ++ L + EK+E + E+
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Query: 170 KV-ELENTLEQEQEALVNKLWKRMDKLEAE 198
K+ E E L++ + + + L+ +
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 27.0 bits (60), Expect = 1.4
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 28 EQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSVNIQ 73
E L + + LQ+ + L + QLR L E+ + R V Q
Sbjct: 4 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQ 49
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 285
Score = 28.3 bits (62), Expect = 1.4
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 15/72 (20%)
Query: 94 LKKEKETLAHHYEQEEEFLTNDLSRKLNQLTEEKY------RLEQTIEQEQERVVNKLMR 147
LK + HY+ ++F L Y R + T+++ Q K+
Sbjct: 3 LKPHFANVQAHYDLSDDFFRLFLDPTQ------TYSCAYFERDDMTLQEAQI---AKIDL 53
Query: 148 KIEKLEAETDAK 159
+ KL +
Sbjct: 54 ALGKLGLQPGMT 65
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein
Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 26.6 bits (59), Expect = 1.7
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 104 HYEQEEEFLTNDLSRKLNQL----TEEKYRLEQTIEQEQERVVNKLMRK--IEKLEAETD 157
YEQ+ LT +++ K+ ++ +EK ++ +E++ E +L+ + +E E
Sbjct: 2 GYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEE-ARELLEQMDLEVREIPPQ 60
Query: 158 AKQNNLEQLRREKVELEN 175
++ ++R K E+
Sbjct: 61 SRGMYSNRMRSYKQEMGK 78
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 28.2 bits (61), Expect = 2.1
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 232 IHSLRSEVMRLRNQLANTQQEHTEKMERYVKDEKN-VREENLRLQRKLQ 279
+ LR E +L+NQ+ + ++ + + + + V +R +R L+
Sbjct: 4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLR 52
Score = 27.8 bits (60), Expect = 2.6
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 161 NNLEQLRREKVELENTLEQEQEALVNKLWKRMDKLEAEKRILQIKL 206
+ L+QLR+E +L+N + ++A + ++ +Q++
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRT 47
>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
1542]}
Length = 540
Score = 27.6 bits (61), Expect = 2.8
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 25 VTREQLQKRIESLQQQNRVLKVELETYKLQLRALQEENKNLRQTSV-NIQAKAEQEEEFI 83
+TREQL K + LK + Y L L AL+ N+++ TSV I +K + E +
Sbjct: 2 ITREQLMKIA------SIPLKRKEPEYNLILDALENFNRDIEGTSVKEIYSKLSKLNELV 55
Query: 84 SNTLMKKI-----QALKKEKETLAHH 104
N K AL+ +++L
Sbjct: 56 DNYQTKYPSSGRNLALENFRDSLYSE 81
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 300
Score = 27.2 bits (59), Expect = 3.0
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 174 ENTLEQEQEALVNKLWKRMDKLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIH 233
E+ E+ AL+ + W +K L ++ P+ + S + T S LS H+H
Sbjct: 1 EDDSEKGSNALLARAWS-PGWSNGDKA-LTTFINGPLLEYSKNRRKADSATTSFLSPHLH 58
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 653
Score = 26.6 bits (58), Expect = 6.2
Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 15/207 (7%)
Query: 54 QLRALQEENKNLRQTSVNIQAKAEQEEEFISNT----LMKKIQALKKEKETLAHHYEQEE 109
L +EE + + + ++KK+ L +K T+ H
Sbjct: 337 ALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFA 396
Query: 110 EFLTNDLSRKLNQLTE---------EKYRLEQTIEQEQERVVNKLMRKIEKLEAETDAKQ 160
L+ S+ L+ E + R ++ + + +R L +
Sbjct: 397 ALLSQLESKSLDTFFEVEQDPGSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGL 456
Query: 161 NNLEQLRREKVELENTLEQEQEALVNKL--WKRMDKLEAEKRILQIKLDQPVSDPSSPHD 218
E EN + V KL + ++ + + + L+ D +
Sbjct: 457 PKDFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLS 516
Query: 219 MNNGDTASNLSTHIHSLRSEVMRLRNQ 245
G T L + SL S + +L +
Sbjct: 517 GIYGLTEGKLQGGVGSLISGIKKLLPE 543
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema
pallidum [TaxId: 160]}
Length = 240
Score = 26.2 bits (57), Expect = 7.3
Identities = 12/77 (15%), Positives = 32/77 (41%)
Query: 194 KLEAEKRILQIKLDQPVSDPSSPHDMNNGDTASNLSTHIHSLRSEVMRLRNQLANTQQEH 253
K E +K+ +++++ + + + + GD N H+ ++ L + H
Sbjct: 22 KEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVGNVH 81
Query: 254 TEKMERYVKDEKNVREE 270
E + Y + ++V +
Sbjct: 82 VEPLALYSRTYRHVSDF 98
>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
562]}
Length = 720
Score = 26.5 bits (58), Expect = 7.9
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRA---LQEENKNLRQTSVNI 72
R+++Q ++ + N + YK LR L + + + + I
Sbjct: 54 ERDRIQAALDEWHRSNPGPVKDKAAYKSFLRELGYLVPQPERVTVETTGI 103
>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 726
Score = 26.1 bits (57), Expect = 8.3
Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 26 TREQLQKRIESLQQQNRVLKVELETYKLQLRA---LQEENKNLRQTSVNI 72
R++LQ +I+ ++ + ++++ Y+ L L E + T+ +
Sbjct: 55 ARDELQAQIDKWHRRRVIEPIDMDAYRQFLTEIGYLLPEPDDFTITTSGV 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.123 0.326
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,298,994
Number of extensions: 60164
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 122
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.9 bits)