BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1596
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 111/173 (64%), Positives = 136/173 (78%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
Q+T SESTLI LLA R I + + S P+ + + +N+RLVAY SDQAHSSVEKAGLI
Sbjct: 149 VLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS 208
Query: 263 LVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICE 322
LVKM+++ DD SLRG+ L +AIE DK++ L+P FVC TLGTTG CAFD L ELGPIC
Sbjct: 209 LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDXLSELGPICA 268
Query: 323 KEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
+EGLWLH+DAAYAG++F+CPEFR +L G+EYA+S FNPSKW+MVHFDCT W
Sbjct: 269 REGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFW 321
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 37/41 (90%)
Query: 38 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWVRT 78
+ HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTW +
Sbjct: 73 VVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASS 113
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/173 (62%), Positives = 131/173 (75%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
Q +ASE+TL+ LLA RT+ I + Q + PEL A I +LVAY SDQAHSSVE+AGLIG
Sbjct: 143 VIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIG 202
Query: 263 LVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICE 322
VK++ I SD ++R L EA+ERDK LIPFF+ TLGTT C+FDNL E+GPIC
Sbjct: 203 GVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICN 262
Query: 323 KEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
KE +WLHVDAAYAGS+FICPEFR L GVE+A+S FNP KWL+V+FDC+AMW
Sbjct: 263 KEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 38 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTW 75
+THW SPY AYFP +SYP++L DML AI C+GF+W
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/173 (61%), Positives = 131/173 (75%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
Q +ASE+TL+ LLA RT+ +R+ Q + P L + +LVAY SDQAHSSVE+AGLIG
Sbjct: 143 VIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG 202
Query: 263 LVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICE 322
VK++ I SD K ++R L EA+ERDK LIPFFV TLGTT C+FDNL E+GPIC
Sbjct: 203 GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH 262
Query: 323 KEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
+E +WLHVDAAYAGS+FICPEFR L GVE+A+S FNP KWL+V+FDC+AMW
Sbjct: 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 2 PVVPKLIPNQGETSKQENDLRNSDVGFYYLRHFAELITHWQSPYMHAYFPALNSYPSLLG 61
P++P P + +T E+ L++ + + +THW SPY AYFP +SYP++L
Sbjct: 40 PLIPATAPQEPDTF--EDILQDVE------KIIMPGVTHWHSPYFFAYFPTASSYPAMLA 91
Query: 62 DMLSDAINCLGFTW 75
DML AI C+GF+W
Sbjct: 92 DMLCGAIGCIGFSW 105
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 228 bits (580), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 107/173 (61%), Positives = 130/173 (75%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
Q +ASE+TL+ LLA RT+ I + Q + PEL A I +LVAY SDQAHSSVE+AGLIG
Sbjct: 143 VIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIG 202
Query: 263 LVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICE 322
VK++ I SD ++R L EA+ERDK LIPFF+ TLGTT C+FDNL E+GPIC
Sbjct: 203 GVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICN 262
Query: 323 KEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
KE +WLHVDAAYAGS+FICPEFR L GVE+A+S FNP WL+V+FDC+AMW
Sbjct: 263 KEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHXWLLVNFDCSAMW 315
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 38 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTW 75
+THW SPY AYFP +SYP++L DML AI C+GF+W
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 127/173 (73%), Gaps = 1/173 (0%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
Q TASESTL+ LL + + +++ ++ HPE + I +LV YCSDQAHSSVE+AGL+G
Sbjct: 143 VIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG 202
Query: 263 LVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICE 322
VK+R ++S++ +RG L +AIE+D + LIPF+ TLGTT +CAFD L+E GP+
Sbjct: 203 GVKLRSVQSENH-RMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGN 261
Query: 323 KEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
K LW+HVDAAYAGS+FICPE+R + G+E A+S FNP W++V+FDC+AMW
Sbjct: 262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHXWMLVNFDCSAMW 314
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 2 PVVPKLIPNQGETSKQENDLRNSDVGFYYLRHFAELITHWQSPYMHAYFPALNSYPSLLG 61
P++P P + E K ++ +++ + R +THW SP HAYFP NSYP+++
Sbjct: 40 PLIPDAAPEKPE--KWQDVMQDIE------RVIMPGVTHWHSPKFHAYFPTANSYPAIVA 91
Query: 62 DMLSDAINCLGFTWVRT 78
DMLS AI C+GFTW+ +
Sbjct: 92 DMLSGAIACIGFTWIAS 108
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Query: 242 RLVAYCSDQAHSSVEKAGL---IGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFF 298
+LV + S+Q+H S++KAG G + I+ +++ + I K+K +PF+
Sbjct: 192 KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFY 251
Query: 299 VCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIA 358
V T GTT AFD ++E+ ICEK LWLHVDAA+ G + + R L G+E ANS+
Sbjct: 252 VNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVT 311
Query: 359 FNPSKWLMVHFDCTAM 374
+NP + V C+A+
Sbjct: 312 WNPHXMMGVLLQCSAI 327
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 5/151 (3%)
Query: 229 QSHPELEHAEINSR--LVAYCSDQAHSSVEK-AGLIGLV--KMRYIESDDKLSLRGDKLI 283
Q +P+ + + + L + S + H S++K A +GL +R +++D++ + + L
Sbjct: 188 QRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLE 247
Query: 284 EAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPE 343
I + + +PF V T GTT AFD LE + +C++ GLWLHVDAA+ GS +
Sbjct: 248 RQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQT 307
Query: 344 FRKWLAGVEYANSIAFNPSKWLMVHFDCTAM 374
R L G++ A+S+A+NP K L C+A+
Sbjct: 308 HRHLLDGIQRADSVAWNPHKLLAAGLQCSAL 338
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Query: 242 RLVAYCSDQAHSSVEKAGL---IGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFF 298
+LV + S+Q+H S++KAG G + I+ +++ + I K+K +PF+
Sbjct: 189 KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFY 248
Query: 299 VCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIA 358
V T GTT AFD ++E+ ICEK LWLHVDAA+ G + + R L G+E ANS+
Sbjct: 249 VNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVT 308
Query: 359 FNPSKWLMVHFDCTAM 374
+NP + V C+A+
Sbjct: 309 WNPHXMMGVLLQCSAI 324
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 242 RLVAYCSDQAHSSVEKAGL---IGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFF 298
RL+A+ S+ +H S++K IG + I+ D++ + L I K+K +PF
Sbjct: 185 RLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEAKQKGFVPFL 244
Query: 299 VCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIA 358
V T GTT AFD L + IC+K +W+HVDAA+ G + + + L+GVE ANS+
Sbjct: 245 VSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVERANSVT 304
Query: 359 FNPSKWLMVHFDCTAM 374
+NP + V C+A+
Sbjct: 305 WNPHXMMGVPLQCSAL 320
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 242 RLVAYCSDQAHSSVEKAGL---IGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFF 298
+L CS ++H +V+K+ +G + ++++ + KL E I + K + LIPF
Sbjct: 202 KLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEGLIPFA 261
Query: 299 VCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIA 358
+ GT GTT A D+L+ + K W HVD AY G + I + L GVE A+SI+
Sbjct: 262 IVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKSRLKGVERAHSIS 320
Query: 359 FNPSKWLMVHFDCTAM 374
+ K C A+
Sbjct: 321 VDFHKLFYQTISCGAL 336
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 299 VCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAG--SSFICPEFRKWLAGVEY--- 353
+ G GTT DN+EEL I ++ +++HVDAA+ G F+ +++K GV Y
Sbjct: 175 IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKK--KGVNYKFD 232
Query: 354 ----ANSIAFNPSK 363
+SI +P K
Sbjct: 233 FSLGVDSITIDPHK 246
>pdb|1V72|A Chain A, Crystal Structure Of Phenylserine Aldolase From
Pseudomonas Putida
Length = 356
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 311 FDNLEELGPICEKEGLWLHVDAAYAGSSFI----CPEFRKWLAGVEYANSIAFNPSK 363
D +E +G +C+ L LH+D + ++ + P W AGV+ +++F +K
Sbjct: 159 LDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVD---ALSFGATK 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,569,842
Number of Sequences: 62578
Number of extensions: 476598
Number of successful extensions: 1148
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 23
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)