RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1596
(375 letters)
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 271 bits (694), Expect = 2e-87
Identities = 111/173 (64%), Positives = 136/173 (78%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
Q+T SESTLI LLA R I + + S P+ + + +N+RLVAY SDQAHSSVEKAGLI
Sbjct: 149 VLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS 208
Query: 263 LVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICE 322
LVKM+++ DD SLRG+ L +AIE DK++ L+P FVC TLGTTG CAFD L ELGPIC
Sbjct: 209 LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICA 268
Query: 323 KEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
+EGLWLH+DAAYAG++F+CPEFR +L G+EYA+S FNPSKW+MVHFDCT W
Sbjct: 269 REGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFW 321
Score = 63.2 bits (154), Expect = 4e-11
Identities = 37/80 (46%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 2 PVVPKLIPNQGETSKQENDLRNSDVGFYYLRHFAELI----THWQSPYMHAYFPALNSYP 57
V P + P E+ + D +I HWQSP+MHAY+PAL S+P
Sbjct: 33 RVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWP 92
Query: 58 SLLGDMLSDAINCLGFTWVR 77
SLLGDML+DAINCLGFTW
Sbjct: 93 SLLGDMLADAINCLGFTWAS 112
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 268 bits (688), Expect = 2e-86
Identities = 106/173 (61%), Positives = 131/173 (75%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
Q +ASE+TL+ LLA RT+ +R+ Q + P L + +LVAY SDQAHSSVE+AGLIG
Sbjct: 143 VIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG 202
Query: 263 LVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICE 322
VK++ I SD K ++R L EA+ERDK LIPFFV TLGTT C+FDNL E+GPIC
Sbjct: 203 GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH 262
Query: 323 KEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
+E +WLHVDAAYAGS+FICPEFR L GVE+A+S FNP KWL+V+FDC+AMW
Sbjct: 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315
Score = 60.9 bits (148), Expect = 2e-10
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 31 LRHFAELI----THWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTW 75
L+ ++I THW SPY AYFP +SYP++L DML AI C+GF+W
Sbjct: 57 LQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 260 bits (665), Expect = 5e-83
Identities = 92/173 (53%), Positives = 126/173 (72%), Gaps = 1/173 (0%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
Q TASESTL+ LL + + +++ ++ HPE + I +LV YCSDQAHSSVE+AGL+G
Sbjct: 143 VIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG 202
Query: 263 LVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICE 322
VK+R ++ + +RG L +AIE+D + LIPF+ TLGTT +CAFD L+E GP+
Sbjct: 203 GVKLRSVQ-SENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGN 261
Query: 323 KEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
K LW+HVDAAYAGS+FICPE+R + G+E A+S FNP KW++V+FDC+AMW
Sbjct: 262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMW 314
Score = 62.4 bits (152), Expect = 7e-11
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 2 PVVPKLIPNQGETSKQENDLRNSDVGFYYLRHFAELI----THWQSPYMHAYFPALNSYP 57
V+P++ P + + + ++ +I THW SP HAYFP NSYP
Sbjct: 28 RVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYP 87
Query: 58 SLLGDMLSDAINCLGFTW 75
+++ DMLS AI C+GFTW
Sbjct: 88 AIVADMLSGAIACIGFTW 105
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 253 bits (649), Expect = 3e-80
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-- 260
F + S + ++A R + + + + +LV + S+Q+H S++KAG
Sbjct: 155 IFSPGGAISNMYSIMAARYKYFPEVKT-----KGMAAVPKLVLFTSEQSHYSIKKAGAAL 209
Query: 261 -IGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGP 319
G + I+ +++ + I K+K +PF+V T GTT AFD ++E+
Sbjct: 210 GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIAD 269
Query: 320 ICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
ICEK LWLHVDAA+ G + + R L G+E ANS+ +NP K + V C+A+
Sbjct: 270 ICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAIL 325
Score = 63.5 bits (155), Expect = 3e-11
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 15/78 (19%)
Query: 1 MPVVPKLIPNQGETSKQENDLRNSDVGFYYLRHFAELI---THWQSPYMHAYFPALNSYP 57
M + + E+ +Q L + + P
Sbjct: 59 MEGFNLELSDHPESLEQ------------ILVDCRDTLKYGVRTGHPRFFNQLSTGLDII 106
Query: 58 SLLGDMLSDAINCLGFTW 75
L G+ L+ N FT+
Sbjct: 107 GLAGEWLTSTANTNMFTY 124
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 251 bits (642), Expect = 3e-79
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 10/187 (5%)
Query: 192 IFGFLRPPNFITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 251
+ G+ F S S + + R + +Q L + S +
Sbjct: 160 LVGW--SSGDGIFCPGGSISNMYAVNLARYQRYPDCKQ-----RGLRTLPPLALFTSKEC 212
Query: 252 HSSVEKAGL---IGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGA 308
H S++K +G +R +++D++ + + L I + + +PF V T GTT
Sbjct: 213 HYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVL 272
Query: 309 CAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVH 368
AFD LE + +C++ GLWLHVDAA+ GS + R L G++ A+S+A+NP K L
Sbjct: 273 GAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAG 332
Query: 369 FDCTAMW 375
C+A+
Sbjct: 333 LQCSALL 339
Score = 63.2 bits (154), Expect = 5e-11
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 2 PVVPKLIPNQGETSKQ-ENDLRNSDVGFYYLRHFAELITHWQSPYMHAYFPALNSYPSLL 60
++ + +QGE+ KQ R +R+ P + +L
Sbjct: 76 QLLDLELRSQGESQKQILERCRA------VIRY----SVKTGHPRFFNQLFSGLDPHALA 125
Query: 61 GDMLSDAINCLGFTW 75
G ++++++N +T+
Sbjct: 126 GRIITESLNTSQYTY 140
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 247 bits (633), Expect = 5e-78
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 8/189 (4%)
Query: 192 IFGFLRPPNFI-TFQTTASESTLICLLAGRTEAIRKYQQSHP-ELEHAEINSRLVAYCSD 249
+ F + ++S + L+ R K +L + +L CS
Sbjct: 152 KYDL--SEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSK 209
Query: 250 QAHSSVEKAGL---IGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTT 306
++H +V+K+ +G + ++++ ++ KL E I + K + LIPF + GT GTT
Sbjct: 210 KSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTT 269
Query: 307 GACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLM 366
A D+L+ + + K +W+HVD AY G + I + L GVE A+SI+ + K
Sbjct: 270 DHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVERAHSISVDFHKLFY 328
Query: 367 VHFDCTAMW 375
C A+
Sbjct: 329 QTISCGALL 337
Score = 69.3 bits (170), Expect = 5e-13
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 2 PVVPKLIPNQGETSKQENDLRNSDVGFY-YLRHFAELI----THWQSPYMHAYFPALNSY 56
+ P E + DL N + + AEL+ Q P A+
Sbjct: 54 APYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLM 113
Query: 57 PSLLGDMLSDAINCLGFTW 75
P++ + + A+N +W
Sbjct: 114 PAVAAEAMIAALNQSMDSW 132
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 96.1 bits (239), Expect = 5e-22
Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 23/173 (13%)
Query: 206 TTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVK 265
T S T LLA + R + ++ + E AH++ +KA +K
Sbjct: 164 TVTSGGTESLLLAMK--TYRDWARATKGITAPEA------VVPVSAHAAFDKAAQYFGIK 215
Query: 266 MRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICEKEG 325
+ D + EAI + V G+ D + E+ + + G
Sbjct: 216 LVRTPLDADYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHG 269
Query: 326 LWLHVDAAYAGSSFICP-------EFRKWLAGVEYANSIAFNPSKWLMVHFDC 371
+ HVDA G FI P + +E S++ + K+
Sbjct: 270 IGCHVDACLGG--FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGT 320
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 93.0 bits (231), Expect = 6e-21
Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 28/182 (15%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
T + +ES L+ L+ + A+ + PE+ AH+ +KA
Sbjct: 130 TTTSGGTESLLLACLSAKMYALHHRGITEPEI-----------IAPVTAHAGFDKAAYYF 178
Query: 263 LVKMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPIC 321
+K+R++E D + K+ + I ++ + G+ D++E LG I
Sbjct: 179 GMKLRHVELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIA 232
Query: 322 EKEGLWLHVDAAYAGSSFICP--------EFRKWLAGVEYANSIAFNPSKWLMVHFDCTA 373
+K L LHVD+ FI V SI+ + K+ +
Sbjct: 233 QKYKLPLHVDSCLGS--FIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSV 290
Query: 374 MW 375
+
Sbjct: 291 IM 292
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 92.4 bits (229), Expect = 8e-21
Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 23/174 (13%)
Query: 201 FITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL 260
T +T S +CL A R + +H S KA
Sbjct: 153 IATPISTGM-SISLCLSAARKKYGSNV-----------------VIYPYASHKSPIKAVS 194
Query: 261 ---IGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEEL 317
+ + + + D++ + + + AI+++ + P V TL D++ E+
Sbjct: 195 FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNSDDIVEI 253
Query: 318 GPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDC 371
ICE + ++ AYA + E K A +++ + K L+
Sbjct: 254 AKICENYDIPHIINGAYAIQNNYYLEKLK-KAFKYRVDAVVSSSDKNLLTPIGG 306
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 86.6 bits (215), Expect = 5e-19
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 22/168 (13%)
Query: 209 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVKMRY 268
+E+ L+ L + K ++ + EH +I AH S EK + ++ Y
Sbjct: 96 TEANLMALRCIKNIWREKRRKGLSKNEHPKI------IVPITAHFSFEKGREMMDLEYIY 149
Query: 269 IESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICEKEGLWL 328
+ ++ + +A+E + G GTT DN+EEL I ++ +++
Sbjct: 150 APIKEDYTIDEKFVKDAVEDYD-----VDGIIGIAGTTELGTIDNIEELSKIAKENNIYI 204
Query: 329 HVDAAYAGSSFICP--EFRKWLAGVEY-------ANSIAFNPSKWLMV 367
HVDAA+ G + P + + GV Y +SI +P K
Sbjct: 205 HVDAAFGG--LVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHC 250
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 76.6 bits (188), Expect = 2e-15
Identities = 26/171 (15%), Positives = 61/171 (35%), Gaps = 20/171 (11%)
Query: 209 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVKMRY 268
SE+ ++ LA + + K + ++ I EK V+++
Sbjct: 127 SEAIMLAGLAFKRKWQNKRKAEGKPVDKPNI------VTGANVQVCWEKFARYFEVELKE 180
Query: 269 IESD-DKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICEKEG-- 325
++ + + ++ ++ + V LG+T F++++ L + ++
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKE 234
Query: 326 ----LWLHVDAAYAGSSFICPEFR-KWLAGVEYANSIAFNPSKWLMVHFDC 371
+HVDAA G +W + SI + K+ +V+
Sbjct: 235 TGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI 285
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 65.7 bits (160), Expect = 6e-12
Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 25/169 (14%)
Query: 209 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVKMRY 268
SE+ ++ +A + ++ + + + + K V++R
Sbjct: 113 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNL-------VCGPVQICWHKFARYWDVELRE 165
Query: 269 IESD-DKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICEKE--- 324
I +L + ++IEA + + V T G T ++ + L +K
Sbjct: 166 IPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQAD 219
Query: 325 ---GLWLHVDAAYAGSSFICPEFR---KWLAGVEYANSIAFNPSKWLMV 367
+ +H+DAA G F+ P W + SI+ + K+ +
Sbjct: 220 TGIDIDMHIDAASGG--FLAPFVAPDIVWDFRLPRVKSISASGHKFGLA 266
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 58.5 bits (141), Expect = 1e-09
Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 21/189 (11%)
Query: 182 TPSLDKELLVIFGFLRPPNFITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 241
T SL ++ + G + S +C L L H +
Sbjct: 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLT---------------LRHKRPKA 144
Query: 242 RLVAYCSDQAHSSVEKAGLIGLVKMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFF 298
+ + + S K+ + + IE+ D+L + I+ +H++
Sbjct: 145 KYIIW-PRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILC-- 201
Query: 299 VCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIA 358
+ T D LEEL IC + V+ AY S C + A V ++
Sbjct: 202 LHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFV 261
Query: 359 FNPSKWLMV 367
+ K MV
Sbjct: 262 QSLDKNFMV 270
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 56.6 bits (136), Expect = 5e-09
Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 21/189 (11%)
Query: 182 TPSLDKELLVIFGFLRPPNFITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 241
T SL +++ + G N S +C L R H +
Sbjct: 118 TNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLR---------------HKRPKA 162
Query: 242 RLVAYCSDQAHSSVEKAGLIGLVKMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFF 298
+ + + S K+ + + IE+ D+L + ++ ++
Sbjct: 163 KYIIW-PRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCIL--C 219
Query: 299 VCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIA 358
+ T D LEEL IC + V+ AY S C + A V ++
Sbjct: 220 IHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFV 279
Query: 359 FNPSKWLMV 367
+ K MV
Sbjct: 280 QSLDKNFMV 288
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 1e-07
Identities = 37/247 (14%), Positives = 71/247 (28%), Gaps = 86/247 (34%)
Query: 156 ILDR-DKYSSKVLDF----VSKENATPTKDPTPSLDKELLVIFG-----FLRPPNF--IT 203
+ +R D + F + N P L + FG +R N+ +
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINN--------P---VNLTIHFGGEKGKRIRE-NYSAMI 1692
Query: 204 FQTTASESTLI-CLLAGRTEAIRKYQQSHPE---------------LEHA---EINSR-L 243
F+T + E Y + +E A ++ S+ L
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 244 VAYCSDQA-HS----S--VEKAGLIGLVKMRYIESDDKLSL---RGDKLIEAIERDKKKH 293
+ + A HS + A ++ + + + + RG + A+ RD+
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSI--------ESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 294 LIPFFVCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEY 353
G A N + +E L V+ + ++ VE
Sbjct: 1805 ----------SNYGMIAI-NPGRVAASFSQEALQYVVERVGKRTGWL----------VEI 1843
Query: 354 ANSIAFN 360
N +N
Sbjct: 1844 VN---YN 1847
Score = 51.2 bits (122), Expect = 5e-07
Identities = 58/345 (16%), Positives = 94/345 (27%), Gaps = 156/345 (45%)
Query: 11 QGETSKQENDLRNSDVGFYYLRHFAELITHWQSPYMHAYFPALNSYPSLLGDMLSDAINC 70
QG N+D Y F EL + Y +Y L+GD++ +
Sbjct: 163 QG----------NTDD---Y---FEEL----RDLY--------QTYHVLVGDLIKFSAET 194
Query: 71 L----------------GF---TWVR-------TEYLRHQNRRCNNANVTCDVLIDINAA 104
L G W+ +YL ++C LI +
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-------IPISC-PLIGVIQL 246
Query: 105 CSTTNSKHHAVE-KTTHYKPTSPFQKVIGKLSSKIKSHNVVVT-----EADKGNSIVILD 158
H+ V K + P + G + + +VT E D S
Sbjct: 247 A------HYVVTAKLLGFTPGELRSYLKG-ATGHSQG---LVTAVAIAETDSWESF---- 292
Query: 159 RDKYSSKVLDFV------SKENATPTKDPTPSLDKE-----------LLVIFGFLRPPNF 201
K + + E A P PS+ ++ +L I
Sbjct: 293 -FVSVRKAITVLFFIGVRCYE-AYPNTSLPPSILEDSLENNEGVPSPMLSISN------- 343
Query: 202 ITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEI---NSR--LVAYCSDQAHSSVE 256
++ + + + K P + EI N LV V
Sbjct: 344 ------LTQEQVQ-------DYVNKTNSHLPAGKQVEISLVNGAKNLV----------V- 379
Query: 257 KAG----LIGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF 297
+G L GL L+LR K +++ + IPF
Sbjct: 380 -SGPPQSLYGLN----------LTLRKAKAPSGLDQSR----IPF 409
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 39.4 bits (91), Expect = 0.001
Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 206 TTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVK 265
A LL + + + H + + AH + I +V
Sbjct: 101 RGAENILFPVLLKYKQKEGKAKNPVFISNFH---------FDTTAAHVELNGCKAINIVT 151
Query: 266 MRYIESDDKLSLRG----DKLIEAIERDKKKHLIPFFVCGTLGTTG--ACAFDNLEELGP 319
+ +S+ +G KL E I + +++ T + G + NL+E+
Sbjct: 152 EKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYE 211
Query: 320 ICEKEGLWLHVDAAYAGSS 338
I ++ G+++ +D+A +
Sbjct: 212 IAKQHGIFVVMDSARFCEN 230
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 37.3 bits (86), Expect = 0.007
Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 20/141 (14%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHP-ELEHAEINSRLVAYCSDQAHSSVEKAGLI 261
T Q +E I +L + E + +S + + + Q HS + +
Sbjct: 95 THQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSN-------YFFDTTQGHSQINGCTVR 147
Query: 262 GLVKMRYIESDDKLSLRG----DKLIEAIERDKKKHLIPFFV----CGTLGTTGAC-AFD 312
+ ++ + +G + L I + + +P+ V + G G +
Sbjct: 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGI-EEVGPNNVPYIVATITSNSAG--GQPVSLA 204
Query: 313 NLEELGPICEKEGLWLHVDAA 333
NL+ + I +K + + +D+A
Sbjct: 205 NLKAMYSIAKKYDIPVVMDSA 225
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 37.0 bits (85), Expect = 0.009
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 249 DQAHSSVEKAGL--IGLVKMRYIESDDKLSLRGDKLIEAIE---RDKKKHLIPFFVCGTL 303
EK G + +V+ ++ ++ +GD ++ ++ +K I +
Sbjct: 124 TTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVT 183
Query: 304 GTTG---ACAFDNLEELGPICEKEGLWLHVDAA 333
+ N+ + + E G+ + DA
Sbjct: 184 VNLAGGQPVSMANMRAVRELTEAHGIKVFYDAT 216
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 34.2 bits (79), Expect = 0.065
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 22/121 (18%)
Query: 246 YCSDQAHSSVEKAGLIGL--VKMRYIESDD-KLSLRGDKLIEAIERDKKKHL-IPFFVC- 300
+ H S + G I K+ D KL + + A+ ++ +H+ IP V
Sbjct: 94 IATQLGHISTHETGAIEATGHKVVTAPCPDGKLRV--ADIESALHENRSEHMVIPKLVYI 151
Query: 301 ------GTLGTTGACAFDNLEELGPICEKEGLWLHVDAA---YAGSSFIC-PEFRKWLAG 350
GT T LE++ C++ GL+L +D A A SS +
Sbjct: 152 SNTTEVGTQYT-----KQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARL 206
Query: 351 V 351
Sbjct: 207 T 207
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 33.7 bits (78), Expect = 0.086
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 246 YCSDQAHSSVEKAG----LIGLVKMRYIESDD-KLSLRGDKLIEAIERDKKK--HLIPFF 298
YC +H + ++ G K+ ++ KL + +L E P
Sbjct: 87 YCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDI--VRLRERTREKVGDVHTTQPAC 144
Query: 299 VCGTLGT-TGAC-AFDNLEELGPICEKEGLWLHVDAA 333
V T T G+ D +E +G +C+ L LH+D +
Sbjct: 145 VSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGS 181
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 33.1 bits (76), Expect = 0.14
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 270 ESDDKLSLRGDKLIEAIERDKK-----KHLIPFFVCGTLGTTGACAFDNLEELGPICEKE 324
S + + L EA + +K K ++ LGTT + L L E +
Sbjct: 166 TSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTT--MTRNELYLLLSFVEDK 223
Query: 325 GLWLHVDAAYAGSSFICPEF 344
G+ L D Y+G++F P F
Sbjct: 224 GIHLISDEIYSGTAFSSPSF 243
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.20
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 17/40 (42%)
Query: 222 EAIRKYQQSHPELEHAEINSRLVAYCSDQA-----HSSVE 256
+A++K L+ + L Y D A +++E
Sbjct: 20 QALKK-------LQ-----ASLKLYADDSAPALAIKATME 47
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 31.9 bits (73), Expect = 0.30
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 270 ESDDKLSLRGDKLIEAIERDKK-----KHLIPFFVCGTLGTTGACAFDNLEELGPICEKE 324
ES + + + EA E +K K LI LGTT D L+ + +
Sbjct: 163 ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTT--LDKDTLKSVLSFTNQH 220
Query: 325 GLWLHVDAAYAGSSFICPEF 344
+ L D YA + F P+F
Sbjct: 221 NIHLVCDEIYAATVFDTPQF 240
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 30.8 bits (70), Expect = 0.75
Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 18/94 (19%)
Query: 280 DKLIEAIERDKKKHLIPFFVCGTLGT--TGAC-AFDNLEELGPICEKEGLWLHVDAAYA- 335
+ L E T TG + + L I ++ + L +D AY
Sbjct: 197 ENLPALKEGRIGAICCSRP------TNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGM 250
Query: 336 ---GSSFICPEFRKWLAGVEYANSIAFNPSKWLM 366
+ W S SK +
Sbjct: 251 PFPNIIYS-DAHLNWDNNTILCFS--L--SKIGL 279
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 30.6 bits (70), Expect = 0.76
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 314 LEELGPICEKEGLWLHVDAAYA 335
+ +G +C G+ HVDA +
Sbjct: 182 IAAIGEMCRARGIIYHVDATQS 203
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 30.3 bits (69), Expect = 0.98
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 11/69 (15%)
Query: 270 ESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGT--TGAC-AFDNLEELGPICEKEGL 326
E K + D I + + T TG + L +L + + +
Sbjct: 163 EGQFKYHV--DFEHLHIGEETGMICVSRP------TNPTGNVITDEELMKLDRLANQHNI 214
Query: 327 WLHVDAAYA 335
L +D AY
Sbjct: 215 PLVIDNAYG 223
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 30.5 bits (69), Expect = 1.00
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 33/113 (29%)
Query: 232 PELEHAEINSRLVAYCSDQAHSSV---EKAGLIGLVKMRYIESDDK--LSLRGDKLIEAI 286
E H +SS E+AGL + + D ++ + + I
Sbjct: 99 DENCH---------------YSSYVAAERAGL----NIALVPKTDYPDYAITPENFAQTI 139
Query: 287 ERDKKKHLIPFF----VCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYA 335
E KK+ + G G +++++ +C + + L V+ AYA
Sbjct: 140 EETKKRGEVVLALITYPDGNYGNLP-----DVKKIAKVCSEYDVPLLVNGAYA 187
>2dd7_A Green fluorescent protein; luminescent protein; HET: CR2 CXS; 1.90A
{Chiridius poppei} PDB: 2dd9_A*
Length = 216
Score = 28.7 bits (64), Expect = 2.3
Identities = 7/56 (12%), Positives = 15/56 (26%)
Query: 100 DINAACSTTNSKHHAVEKTTHYKPTSPFQKVIGKLSSKIKSHNVVVTEADKGNSIV 155
A + + E + +P + K V T + ++V
Sbjct: 148 SYARAFQLKDGSFYTAEVKNNIDFKNPIHESFSKSGPMFTHRRVEETHTKENLAMV 203
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 28.7 bits (65), Expect = 2.9
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 249 DQAHSSVEKAGLIGLVK 265
+ AH S K + L +
Sbjct: 153 EMAHYSATKTMQLSLSR 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 3.4
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 24/118 (20%)
Query: 20 DLRNSDVGFYYLRHFAELITHWQSP--YMHAYF--PALNSYP-SLLGDMLSDAINC---- 70
+L+ Y L H ++ H+ P + P L+ Y S +G L + +
Sbjct: 434 ELKVKLENEYAL-H-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 71 ------LGFTWVRTEYLRHQNRRCNNANVTCDVLIDINAACSTTNSKHHAVEKTTHYK 122
L F ++ + +RH + N + + L + K + + Y+
Sbjct: 492 LFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLK------FYKPYICDNDPKYE 542
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 27.9 bits (63), Expect = 5.0
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 269 IESDDKLSLRGDKLIEAIERDKK-KHLIPFFV-CGTLGTTGACAFDNLEELGPICEKEGL 326
+ + + + D H+ V T TTG ++E+G + + G
Sbjct: 109 YDCGEVARPDVQAIDAILNADPTISHI--AMVHSET--TTGMLN--PIDEVGALAHRYGK 162
Query: 327 WLHVDA 332
VDA
Sbjct: 163 TYIVDA 168
>3cmn_A Putative hydrolase; PSI-II, NYSGXRC, apoenzyme, helical protein,
10492M, structural genomics, protein structure
initiative; 2.25A {Chloroflexus aurantiacus j-10-fl}
SCOP: d.92.1.16
Length = 372
Score = 28.2 bits (62), Expect = 5.3
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 329 HVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHF 369
++ +FR W+ E ++ F W+ +F
Sbjct: 162 NIARVQQQLGLSDEDFRLWITLHEMTHAFEFEAYPWVRTYF 202
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 27.9 bits (63), Expect = 5.4
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 250 QAHSSVEKAGLIGLVK 265
A S++ + +IG+V+
Sbjct: 154 LALSNIMRLPVIGVVR 169
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 27.6 bits (62), Expect = 6.1
Identities = 15/86 (17%), Positives = 21/86 (24%), Gaps = 32/86 (37%)
Query: 250 QAHSSVEKAGLIGLVK----------MR-------YIESD---DKLSLRGDKLIEAIERD 289
HS +AG+ L K +R I S + G E +
Sbjct: 168 AVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK 227
Query: 290 KKKHLIPFFVCGTLGTT----GACAF 311
IP +G F
Sbjct: 228 -----IP---AKRIGVPEEVSSVVCF 245
>2c9j_A Green fluorescent protein FP512; beta-barrel, bioluminescence,
luminescence, luminescent protein; HET: CRQ; 1.35A
{Cerianthus membranaceus}
Length = 223
Score = 27.5 bits (61), Expect = 6.9
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 100 DINAACSTTNSKHHAVEKTTHYKPTSPFQKVIGKLSSKIKSHNVVVTEADKGNSIVIL 157
A + ++ TT Y+ Q + G H +V T+ + G +V
Sbjct: 154 FCPKAYLLKDGSYYYGHMTTFYRSKKSGQPLPG---FHFIKHRLVKTKVEPGFKMVEQ 208
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain,
activator, DNA-binding, NUC transcription; HET: DNA;
2.77A {Homo sapiens}
Length = 106
Score = 26.2 bits (58), Expect = 7.7
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 16/48 (33%)
Query: 197 RPPN-FITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 243
RP N F+ + A RK +P L +AE++ L
Sbjct: 32 RPMNAFMVW---------------AQAARRKLADQYPHLHNAELSKTL 64
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG,
TCR-A, transcription factor; HET: DNA; NMR {Mus
musculus} SCOP: a.21.1.1
Length = 86
Score = 25.6 bits (57), Expect = 8.0
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 16/48 (33%)
Query: 197 RPPN-FITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 243
+P N F+ + E E A IN L
Sbjct: 5 KPLNAFMLY---------------MKEMRANVVAESTLKESAAINQIL 37
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 27.8 bits (61), Expect = 8.4
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 17/114 (14%)
Query: 251 AHSSVEKAGLIGLVKMRYIESD-DKLSLRGDKLIEAIERDKKKHLI-------------P 296
H S+E+ ++ K Y+ ++ + G + ++ + + I P
Sbjct: 254 CHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKP 313
Query: 297 FFVCGTLGT-TGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLA 349
+ T T G C N +E + EK LH D A+ G + P + A
Sbjct: 314 SYCVVTNCTYDGVCY--NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYA 365
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 27.1 bits (61), Expect = 8.5
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 249 DQAHSSVEKAGLIGLVK 265
+ +V KA L+ K
Sbjct: 153 YEPIYNVTKAALMMFSK 169
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 27.1 bits (61), Expect = 8.5
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 250 QAHSSVEKAGLIGLVK 265
+S +AG+ LV+
Sbjct: 156 MVATSAARAGVKNLVR 171
>2g6y_A Green fluorescent protein 2; natural chromophore, rapid matura
beta-CAN, luminescent protein; HET: CR2; 1.60A
{Pontellina plumata} PDB: 2g6x_A* 2g3o_A*
Length = 217
Score = 27.2 bits (60), Expect = 8.6
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 100 DINAACSTTNSKHHAVEKTTHYKPTSPFQKVIGKL-SSKIKSHNVVVTEADKGNSIV 155
S + +++ +H S I + V ++ IV
Sbjct: 151 SFTRTFSLRDGGYYSSVVDSHMHFKSAIHPSILQNGGPMFAFRRVEEDHSNTELGIV 207
>2gw3_A Kaede; beta barrel, luminescent protein; HET: CR8; 1.40A
{Trachyphyllia geoffroyi} PDB: 1zux_A* 3s05_A* 3p8u_A*
3tmr_A* 3tmt_A* 2vvh_A* 2vvi_A* 2vvj_A* 2btj_A* 2gw4_B*
2ddc_A* 2ddd_A* 2ie2_A* 2z1o_A* 2z6y_A* 2gx2_A* 2gx0_A*
3ls3_A* 3lsa_A* 1xss_A* ...
Length = 225
Score = 27.1 bits (60), Expect = 9.0
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 100 DINAACSTTNSKHHAVEKTTHYKPTSPFQKVIGKLSSKIKSHNVVVTEADKGNSIVIL 157
DI A H+ + T YK K+ G H + + DK + V L
Sbjct: 156 DITMALLLKGDVHYRCDFRTTYKSRQEGVKLPG---YHFVDHCISILRHDKDYNEVKL 210
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 27.2 bits (61), Expect = 9.4
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 250 QAHSSVEKAGLIGLVK 265
Q H+ KA + + +
Sbjct: 174 QVHAGSAKAAVDAMTR 189
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 27.1 bits (61), Expect = 9.7
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 306 TGACA-FDNLEELGPICEKEGLWLHVDAAYA 335
TGA A + EE + K GLWL D Y
Sbjct: 171 TGAVADWGYFEEALGLARKHGLWLIHDNPYV 201
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.413
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,746,693
Number of extensions: 335194
Number of successful extensions: 871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 851
Number of HSP's successfully gapped: 58
Length of query: 375
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 280
Effective length of database: 4,049,298
Effective search space: 1133803440
Effective search space used: 1133803440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)