RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1596
(375 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 147 bits (371), Expect = 1e-40
Identities = 106/173 (61%), Positives = 131/173 (75%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
Q +ASE+TL+ LLA RT+ +R+ Q + P L + +LVAY SDQAHSSVE+AGLIG
Sbjct: 143 VIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG 202
Query: 263 LVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICE 322
VK++ I SD K ++R L EA+ERDK LIPFFV TLGTT C+FDNL E+GPIC
Sbjct: 203 GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH 262
Query: 323 KEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAMW 375
+E +WLHVDAAYAGS+FICPEFR L GVE+A+S FNP KWL+V+FDC+AMW
Sbjct: 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315
Score = 50.6 bits (120), Expect = 2e-07
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 16/78 (20%)
Query: 2 PVVPKLIPNQGETSKQENDLRNSDVGFYYLRHFAELI----THWQSPYMHAYFPALNSYP 57
P++P P + +T + L+ ++I THW SPY AYFP +SYP
Sbjct: 40 PLIPATAPQEPDTFED------------ILQDVEKIIMPGVTHWHSPYFFAYFPTASSYP 87
Query: 58 SLLGDMLSDAINCLGFTW 75
++L DML AI C+GF+W
Sbjct: 88 AMLADMLCGAIGCIGFSW 105
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 88.4 bits (218), Expect = 6e-20
Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 21/181 (11%)
Query: 203 TFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 262
T +SE+ ++ +A + ++ E A + K
Sbjct: 119 TNTIGSSEACMLGGMAMKWRWRKRM-------EAAGKPTDKPNLVCGPVQICWHKFARYW 171
Query: 263 LVKMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPIC 321
V++R I L + ++IEA + + V T G T ++ + L
Sbjct: 172 DVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDAL 225
Query: 322 E------KEGLWLHVDAAYAGSSF-ICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAM 374
+ + +H+DAA G W + SI+ + K+ + C +
Sbjct: 226 DKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWV 285
Query: 375 W 375
Sbjct: 286 I 286
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 80.4 bits (197), Expect = 3e-17
Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 21/192 (10%)
Query: 187 KELLVIFGFLRPPNFITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 246
++ + G + S +C L R + +
Sbjct: 101 LNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPK----------------AKYII 144
Query: 247 CSDQAHSSVEKAGL---IGLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTL 303
S K+ + V + + D+L + I+ +H + T
Sbjct: 145 WPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEH--ILCLHSTT 202
Query: 304 GTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSK 363
D LEEL IC + V+ AY S C + A V ++ + K
Sbjct: 203 ACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDK 262
Query: 364 WLMVHFDCTAMW 375
MV +
Sbjct: 263 NFMVPVGGAIIA 274
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 77.3 bits (189), Expect = 4e-16
Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 24/192 (12%)
Query: 187 KELLVIFGFLRPPNFITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 246
+ G + I + S +CL A R +
Sbjct: 120 ESFFKQLGL--NVHAIATPISTGMSISLCLSAARKKYGSNV-----------------VI 160
Query: 247 CSDQAHSSVEKAGLIGLVKMRYIE---SDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTL 303
+H S KA + MR +E D++ + + + AI+++ + P V TL
Sbjct: 161 YPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC-VLSTL 219
Query: 304 GTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWLAGVEYANSIAFNPSK 363
D++ E+ ICE + ++ AYA + E K A +++ + K
Sbjct: 220 TFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKK-AFKYRVDAVVSSSDK 278
Query: 364 WLMVHFDCTAMW 375
L+ ++
Sbjct: 279 NLLTPIGGGLVY 290
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 38.6 bits (89), Expect = 0.001
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 280 DKLIEAIERDKKKHLIPFFVCGTLGTTGACAF---DNLEELGPICEKEGLWLHVDAAYAG 336
+KL I ++K I + N+ + + G+ + DA
Sbjct: 161 NKLATLI-KEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCV 219
Query: 337 SSFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAM 374
+ + + Y N + + + D M
Sbjct: 220 ENAYFIKEQ----EAGYENVSIKDIVHEMFSYADGCTM 253
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 36.8 bits (84), Expect = 0.003
Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 17/164 (10%)
Query: 180 DPT-PSLDKELLVIFGFLRPPNFITFQTTASESTLICLLAGRTEAIRKYQQSHPELEHAE 238
L + +F + ++I + I + KY+Q + ++
Sbjct: 74 SRNYYDLKDKAKELFNY----DYIIPAHQGRGAENILFPV-----LLKYKQKEGKAKNPV 124
Query: 239 INSRLVAYCSDQAHSSVEKAGLIGLVKMRYIESDDKLSLRGDKLIEAIE---RDKKKHLI 295
S + + AH + I +V + +S+ +GD I+ ++ I
Sbjct: 125 FISN-FHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNI 183
Query: 296 PFFVCGTLGTTGACAF---DNLEELGPICEKEGLWLHVDAAYAG 336
V + NL+E+ I ++ G+++ +D+A
Sbjct: 184 VAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFC 227
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 36.4 bits (83), Expect = 0.005
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 280 DKLIEAIERDKKKHLIPFFVCGTLGTTG--ACAFDNLEELGPICEKEGLWLHVDAAYAGS 337
+ L IE ++ T + G + NL+ + I +K + + +D+A
Sbjct: 170 EGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAE 229
Query: 338 SFICPEFRKWLAGVEYANSIAFNPSKWLMVHFDCTAM 374
+ + R+ EY + ++ + D AM
Sbjct: 230 NAYFIKQREA----EYKDWTIEQITRETYKYADMLAM 262
>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol
dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 187
Score = 32.3 bits (72), Expect = 0.049
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 3/84 (3%)
Query: 293 HLIPFFVCGTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKWL-AGV 351
HL +F+ G +G G + ++E G I + V A + + L
Sbjct: 1 HL-SYFL-GAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSR 58
Query: 352 EYANSIAFNPSKWLMVHFDCTAMW 375
+L A
Sbjct: 59 VVGICGTQEKCLFLTSELGFDAAV 82
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 32.1 bits (72), Expect = 0.089
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 272 DDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACAFDNLEELGPICEKEGLWLHVD 331
+D+ L D+L + + + +I T +LEE+ + L + D
Sbjct: 142 EDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK---KDLEEIADFVVEHDLIVISD 198
Query: 332 AAYAGSSFICPEFRKWLAGVE-YANSIAFN-PSKWL 365
Y + + + +I N SK
Sbjct: 199 EVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF 234
>d1v1oa1 b.40.2.2 (A:18-108) Exotoxin 1 (SET1, Superantigen-like
protein 7) {Staphylococcus aureus [TaxId: 1280]}
Length = 91
Score = 27.8 bits (62), Expect = 0.62
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 113 HAVEKTTHY--KPTSPFQKVIGKLSSKIKSHNVVVTEADKGNSIVIL--DRDKYSSKV-- 166
H + Y + + V GK+ + S+ V D+ + + +L D+++Y +
Sbjct: 6 HDIRDLHRYYSSESFEYSNVSGKVENYNGSNVVRFNPKDQNHQLFLLGKDKEQYKEGLQG 65
Query: 167 LD-FVSKEN 174
+ FV +E
Sbjct: 66 QNVFVVQEL 74
>d2z8la1 b.40.2.2 (A:13-100) Superantigen-like protein SET3
{Staphylococcus aureus [TaxId: 1280]}
Length = 88
Score = 25.9 bits (57), Expect = 2.8
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 122 KPTSPFQKVIGKLSSKIKSHNVVVTEADKGNSIVIL--DRDKYSSKVLD----FVSKEN 174
+ + V G SK H ++ + K I I D ++ ++ FV KE
Sbjct: 11 GASKELKNVTGYRYSKGGKHYLIFDKHQKFTRIQIFGKDIERLKTRKNPGLDIFVVKEA 69
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 27.4 bits (60), Expect = 3.0
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 262 GLVKMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFVCGTLGTTGACA-FDNLEELGPI 320
G + + + + +++ +AI K + TG D + + +
Sbjct: 136 GTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTP----SNPTGMVYTPDEVRAIAQV 191
Query: 321 CEKEGLWLHVDAAYAGSSFICPEFR--KWLAGVEYANSIAFN-PSKWL 365
+ GLW+ D Y + + + Y S+ + +K
Sbjct: 192 AVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY 239
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4
12-hydroxydehydrogenase/prostaglandin 15-keto reductase
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 182
Score = 26.9 bits (58), Expect = 3.2
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 301 GTLGTTGACAFDNLEELGPICEKEGLWLHVDAAYAGSSFICPEFRKW 347
GT+G G A+ L E+ + K G + V AA + + K
Sbjct: 8 GTIGMPGLTAYFGLLEVCGV--KGGETVLVSAAAGAVGSVVGQIAKL 52
>d1ka1a_ e.7.1.1 (A:) 3';5'-adenosine bisphosphatase, PAP
phosphatase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 354
Score = 27.0 bits (58), Expect = 3.8
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 132 GKLSSKIKSHNVVVTEADKGNSIVILDRDKYSSKVLDFVSKENATPTKDPTPS 184
++ K+ N VT D +I++ K + V +E+++ D S
Sbjct: 31 KDSTTITKNDNSPVTTGDYAAQTIIINAIKSNFPDDKVVGEESSSGLSDAFVS 83
>d1vqqa2 d.175.1.1 (A:139-327) Penicillin binding protein 2a
(PBP2A), middle domain {Staphylococcus aureus [TaxId:
1280]}
Length = 189
Score = 26.6 bits (57), Expect = 4.2
Identities = 12/142 (8%), Positives = 33/142 (23%), Gaps = 2/142 (1%)
Query: 155 VILDRDKYSSKVLDFVSKENATPTKDPTPSLDKELLVIFGFLRPPNFITFQTTASESTLI 214
+ + S K ++KE + +D+ + F+ S+
Sbjct: 33 IGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKTVKKMDEYLSD--FA 90
Query: 215 CLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVKMRYIESDDK 274
T + + + + ++ + +E
Sbjct: 91 KKFHLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKEYKGYKDDAVIGKKGLEKLYD 150
Query: 275 LSLRGDKLIEAIERDKKKHLIP 296
L+ + D + I
Sbjct: 151 KKLQHEDGYRVTIVDDNSNTIA 172
>d2rh7a1 d.22.1.1 (A:7-226) Green fluorescent protein, GFP {Renilla
reniformis [TaxId: 6136]}
Length = 220
Score = 26.6 bits (59), Expect = 4.9
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 100 DINAACSTTNSKHHAVEKTTHYKPTSPFQKVIGKLSSKIKSHNVVVTEADKGNSIVIL 157
+ A KH T YK P + + H +V T D + V+
Sbjct: 154 ECIIAFKLQTGKHFTYHMRTVYKSKKPVETMPL---YHFIQHRLVKTNVDTASGYVVQ 208
>d1moua_ d.22.1.1 (A:) Pocilloporin pigment Rtms5 {Coral (Montipora
efflorescens) [TaxId: 105610]}
Length = 221
Score = 26.2 bits (58), Expect = 6.6
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 96 DVLI-DINAACSTTNSKHHAVEKTTHYKPTSPFQKVIGKLSSKIKSHNVVVTEADKGNSI 154
+LI + A H+ E T YK +K + + VT +K +
Sbjct: 151 GMLIGNNFMALKLEGGGHYLCEFKTTYK----AKKPVKMPGYHYVDRKLDVTNHNKDYTS 206
Query: 155 VIL 157
V
Sbjct: 207 VEQ 209
>d1uisa_ d.22.1.1 (A:) Red fluorescent protein fp61 {Sea anemone
(Entacmaea quadricolor) [TaxId: 6118]}
Length = 227
Score = 26.2 bits (58), Expect = 6.7
Identities = 7/60 (11%), Positives = 17/60 (28%)
Query: 97 VLIDINAACSTTNSKHHAVEKTTHYKPTSPFQKVIGKLSSKIKSHNVVVTEADKGNSIVI 156
+ A + + + T Y+ + + + E+DK +V
Sbjct: 156 LRGYSQMALNVDGGGYLSCSFETTYRSKKTVENFKMPGFHFVDHRLERLEESDKEMFVVQ 215
>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 361
Score = 26.0 bits (57), Expect = 8.0
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 66 DAINCLGFTWVRTEYLRHQNRRCNNANVTCDVLIDINAACSTTNSKHHAVEKTTHYKPTS 125
D I CL T++ LR + R N N ++L+ C + +++ + T
Sbjct: 130 DLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTE 189
Query: 126 PF----QKVIGKLSSKIKSHNVVVTEADK 150
K+I +L +I + V A K
Sbjct: 190 GVKWTPSKMIARLGKEINNPESVYYWAQK 218
>d1vl2a2 d.210.1.1 (A:174-409) Argininosuccinate synthetase,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 236
Score = 25.6 bits (56), Expect = 9.5
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 135 SSKIKSHNVVVTEADKGNSIVILDRDKYSSKVLDFVSKE 173
++ V KGN + + YS + S +
Sbjct: 165 KAQENVTGKVTVSIYKGNVMPVARYSPYSLYNPELSSMD 203
>d1ggxa_ d.22.1.1 (A:) Red fluorescent protein (fp583 or
dsred(clontech)) {Coral (Discosoma sp.) [TaxId: 86600]}
Length = 219
Score = 25.4 bits (56), Expect = 9.6
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 100 DINAACSTTNSKHHAVEKTTHYKPTSPFQKVIGKLSSKIKSHNVVVTEADKGNSIVIL 157
+I+ A + H+ VE + Y +K + + +T ++ +IV
Sbjct: 154 EIHKALKLKDGGHYLVEFKSIYM----AKKPVQLPGYYYVDSKLDITSHNEDYTIVEQ 207
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.413
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,411,281
Number of extensions: 65196
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 24
Length of query: 375
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,213,086
Effective search space: 349368768
Effective search space used: 349368768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)