BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15960
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 8/120 (6%)
Query: 60 EKMIQDESVPLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGT 117
EK+ D + PLNY+ A+ AV+ + +N +V EGANT+D R+++ PR RLD GT
Sbjct: 361 EKLSTD-TQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGT 419
Query: 118 FGTMXXXXXXXXXXXXYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
+G M G VV ++GDSAFGFSGME+ET+ RY LPV +VI N
Sbjct: 420 WGVMGIGMGYAIGASVTS-----GSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNN 474
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 22/144 (15%)
Query: 39 AKVEEGEMKVGGNMRGVDSAVEKMIQDESVPLNYYAAIHAVQ---VSIPDNCIIVGEGAN 95
AKV+ + K+ G M + S +NY ++ V+ ++ PD +V EGAN
Sbjct: 353 AKVDGNKAKLAGKMTA---------ETPSGMMNYSNSLGVVRDFMLANPD-ISLVNEGAN 402
Query: 96 TMDIGRSLLLNNLPRHRLDAGTFGTMXXXXXXXXXXXXYCNHYAP--GKRVVCVQGDSAF 153
+D R ++ PR RLD+GT+G M YC A GK V+ V+GDSAF
Sbjct: 403 ALDNTRMIVDMLKPRKRLDSGTWGVMGIGMG-------YCVAAAAVTGKPVIAVEGDSAF 455
Query: 154 GFSGMELETLVRYRLPVILVILYN 177
GFSGMELET+ RY LPV ++I+ N
Sbjct: 456 GFSGMELETICRYNLPVTVIIMNN 479
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 40.4 bits (93), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 141 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G+R + V GD + G+S E +TLVR +LP+I++I+ N
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNN 475
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 40.4 bits (93), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 141 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G+R + V GD + G+S E +TLVR +LP+I++I+ N
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNN 475
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 40.4 bits (93), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 141 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G+R + V GD + G+S E +TLVR +LP+I++I+ N
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNN 475
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 40.4 bits (93), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 141 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G+R + V GD + G+S E +TLVR +LP+I++I+ N
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNN 475
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 40.4 bits (93), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 141 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G+R + V GD + G+S E +TLVR +LP+I++I+ N
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNN 475
>pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
Length = 563
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 141 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G+R + V GD + G+S E +TLVR +LP+I++I N
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIXNN 475
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 35.8 bits (81), Expect = 0.012, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 69 PLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMXXXXXX 127
PL Y + AV +++ PD + G ++ R L L RH + + F TM
Sbjct: 370 PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRH-ITSNLFATMGVGIPG 428
Query: 128 XXXXXXYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
N+ P ++V + GD + +L T V+Y LPVI V+ N
Sbjct: 429 AIAAKL--NY--PERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTN 474
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 35.8 bits (81), Expect = 0.013, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 69 PLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMXXXXXX 127
PL Y + AV +++ PD + G ++ R L L RH + + F TM
Sbjct: 362 PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRH-ITSNLFATMGVGIPG 420
Query: 128 XXXXXXYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
N+ P ++V + GD + +L T V+Y LPVI V+ N
Sbjct: 421 AIAAKL--NY--PERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTN 466
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 35.8 bits (81), Expect = 0.013, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 69 PLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMXXXXXX 127
PL Y + AV +++ PD + G ++ R L L RH + + F TM
Sbjct: 370 PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRH-ITSNLFATMGVGIPG 428
Query: 128 XXXXXXYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
N+ P ++V + GD + +L T V+Y LPVI V+ N
Sbjct: 429 AIAAKL--NY--PERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTN 474
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 35.8 bits (81), Expect = 0.013, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 69 PLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMXXXXXX 127
PL Y + AV +++ PD + G ++ R L L RH + + F TM
Sbjct: 370 PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRH-ITSNLFATMGVGIPG 428
Query: 128 XXXXXXYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
N+ P ++V + GD + +L T V+Y LPVI V+ N
Sbjct: 429 AIAAKL--NY--PERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTN 474
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 139 APGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
AP +R + + GD +F + E+ +VR +LPVI+ ++ N
Sbjct: 429 APERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINN 467
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 139 APGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
AP +R + + GD +F + E+ +VR +LPVI+ ++ N
Sbjct: 429 APERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINN 467
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 139 APGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
AP +R + + GD +F + E+ +VR +LPVI+ ++ N
Sbjct: 429 APERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINN 467
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 35.0 bits (79), Expect = 0.020, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 69 PLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMXXXXXX 127
PL Y + AV +++ PD + G ++ R L L RH + + F TM
Sbjct: 362 PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRH-ITSNLFATMGVGIPG 420
Query: 128 XXXXXXYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
N+ P ++V + GD + +L T V+Y LPVI V+ N
Sbjct: 421 AIAAKL--NY--PERQVFNLAGDGGASMTMQDLVTQVQYHLPVINVVFTN 466
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++VV V GD F S MELET VR + V+ +I +
Sbjct: 437 PERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVD 474
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 142 KRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
++ V + GD +F + E+ +VRY LPVI+ ++ N
Sbjct: 428 RQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINN 463
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V + GD AF + ++ T VRY +PVI V+ N
Sbjct: 430 PDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSN 467
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V + GD AF + ++ T VRY +PVI V+ N
Sbjct: 429 PDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSN 466
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 417 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 454
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 455
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 455
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 455
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 455
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 455
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 417 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 454
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 455
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 455
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P + + GD F + +LET+ R LP++ V++ N
Sbjct: 453 PDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNN 490
>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
Length = 573
Score = 30.4 bits (67), Expect = 0.57, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P + + GD F + +LET+ R LP++ V++ N
Sbjct: 453 PDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNN 490
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P KRV+ GD + + E+ T++R+ L L +L N
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNN 471
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P KRV+ GD + + E+ T++R+ L L +L N
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNN 471
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P KRV+ GD + + E+ T++R+ L L +L N
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNN 471
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P KRV+ GD + + E+ T++R+ L L +L N
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNN 471
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P KRV+ GD + + E+ T++R+ L L +L N
Sbjct: 433 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNN 470
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P KRV+ GD + + E+ T++R+ L L +L N
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNN 471
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P KRV+ GD + + E+ T++R+ L L +L N
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNN 471
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 141 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
GKR++ V GD AF +G EL R + I VIL+N
Sbjct: 440 GKRILTVVGDGAFQMTGWELGNCRRLGIDPI-VILFN 475
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P RV GD A + E V ++LPVI ++ N
Sbjct: 441 PNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMVFTN 478
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,847,290
Number of Sequences: 62578
Number of extensions: 130176
Number of successful extensions: 263
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 41
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)