Query psy15960
Match_columns 177
No_of_seqs 242 out of 1685
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 17:27:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02006 TPP_Gcl Thiamine pyrop 100.0 1.9E-31 4E-36 213.5 12.0 107 66-177 4-111 (202)
2 cd02013 TPP_Xsc_like Thiamine 100.0 2.4E-30 5.1E-35 206.4 12.1 106 68-177 2-107 (196)
3 COG3961 Pyruvate decarboxylase 100.0 1.2E-30 2.6E-35 229.7 10.4 146 24-177 316-465 (557)
4 cd02015 TPP_AHAS Thiamine pyro 100.0 3.5E-29 7.7E-34 197.8 11.6 104 70-177 1-104 (186)
5 cd02010 TPP_ALS Thiamine pyrop 100.0 2.3E-28 5E-33 192.2 10.4 101 72-177 1-102 (177)
6 cd02003 TPP_IolD Thiamine pyro 100.0 2.7E-28 5.9E-33 195.8 10.9 100 73-177 2-102 (205)
7 PLN02573 pyruvate decarboxylas 100.0 4E-28 8.6E-33 220.9 13.1 152 17-177 325-482 (578)
8 cd02005 TPP_PDC_IPDC Thiamine 100.0 6.6E-28 1.4E-32 190.6 11.4 104 69-177 1-104 (183)
9 cd02004 TPP_BZL_OCoD_HPCL Thia 100.0 8.7E-28 1.9E-32 187.4 11.5 102 72-177 1-102 (172)
10 TIGR01504 glyox_carbo_lig glyo 99.9 8.3E-28 1.8E-32 219.1 11.7 107 67-177 366-472 (588)
11 PRK12474 hypothetical protein; 99.9 1.2E-27 2.5E-32 215.1 12.3 107 66-177 337-443 (518)
12 cd02014 TPP_POX Thiamine pyrop 99.9 2.7E-27 5.8E-32 185.9 11.5 104 69-177 1-105 (178)
13 PRK06154 hypothetical protein; 99.9 2.5E-27 5.4E-32 215.1 12.4 108 66-177 377-485 (565)
14 cd02009 TPP_SHCHC_synthase Thi 99.9 1.7E-27 3.7E-32 186.8 9.4 102 71-177 2-104 (175)
15 PRK06965 acetolactate synthase 99.9 3.4E-27 7.3E-32 215.0 12.2 107 67-177 385-491 (587)
16 COG0028 IlvB Thiamine pyrophos 99.9 3.5E-27 7.5E-32 213.6 11.9 103 70-177 359-462 (550)
17 PRK07979 acetolactate synthase 99.9 4E-27 8.8E-32 213.9 12.0 107 67-177 369-475 (574)
18 TIGR03457 sulphoacet_xsc sulfo 99.9 5.3E-27 1.2E-31 213.3 12.1 107 67-177 378-484 (579)
19 PRK07586 hypothetical protein; 99.9 6.5E-27 1.4E-31 209.8 12.2 106 67-177 334-439 (514)
20 PRK07282 acetolactate synthase 99.9 3.3E-27 7.1E-32 214.3 10.3 107 67-177 366-472 (566)
21 PRK08979 acetolactate synthase 99.9 5.5E-27 1.2E-31 213.0 11.6 107 67-177 369-475 (572)
22 cd02002 TPP_BFDC Thiamine pyro 99.9 1E-26 2.2E-31 181.9 11.4 102 70-177 1-103 (178)
23 PRK06466 acetolactate synthase 99.9 8.2E-27 1.8E-31 211.9 12.2 107 67-177 371-477 (574)
24 PRK09107 acetolactate synthase 99.9 8.9E-27 1.9E-31 212.6 11.8 107 67-177 377-484 (595)
25 PRK08273 thiamine pyrophosphat 99.9 1.2E-26 2.5E-31 211.8 12.1 106 67-177 363-475 (597)
26 PRK09124 pyruvate dehydrogenas 99.9 1.3E-26 2.8E-31 210.5 12.2 106 67-177 356-462 (574)
27 TIGR03393 indolpyr_decarb indo 99.9 6.9E-27 1.5E-31 211.0 10.2 105 68-177 354-458 (539)
28 TIGR02720 pyruv_oxi_spxB pyruv 99.9 1.3E-26 2.9E-31 210.7 12.1 106 67-177 356-462 (575)
29 PRK05858 hypothetical protein; 99.9 2.3E-26 4.9E-31 207.7 12.3 108 66-177 354-461 (542)
30 TIGR02418 acolac_catab acetola 99.9 2.3E-26 5E-31 207.4 12.2 106 67-177 356-462 (539)
31 PRK11269 glyoxylate carboligas 99.9 1.9E-26 4E-31 210.2 11.5 107 67-177 367-473 (591)
32 TIGR03254 oxalate_oxc oxalyl-C 99.9 2.4E-26 5.1E-31 208.0 12.0 106 67-177 363-470 (554)
33 PRK06048 acetolactate synthase 99.9 1.9E-26 4.1E-31 209.0 11.2 106 67-177 363-468 (561)
34 PLN02470 acetolactate synthase 99.9 2.6E-26 5.7E-31 209.0 11.9 106 68-177 375-480 (585)
35 PRK06457 pyruvate dehydrogenas 99.9 2.9E-26 6.4E-31 207.3 11.8 107 66-177 343-451 (549)
36 PRK06456 acetolactate synthase 99.9 3.2E-26 7E-31 207.7 12.0 107 67-177 369-475 (572)
37 PRK06725 acetolactate synthase 99.9 3.9E-26 8.5E-31 207.5 11.8 107 67-177 370-476 (570)
38 KOG1184|consensus 99.9 2.1E-26 4.6E-31 202.4 8.7 148 24-177 319-469 (561)
39 PRK07525 sulfoacetaldehyde ace 99.9 6.4E-26 1.4E-30 206.6 12.1 106 68-177 384-489 (588)
40 PRK08611 pyruvate oxidase; Pro 99.9 6.5E-26 1.4E-30 206.2 11.8 107 66-177 355-462 (576)
41 PRK07789 acetolactate synthase 99.9 5.1E-26 1.1E-30 208.1 11.2 107 67-177 395-501 (612)
42 PRK08527 acetolactate synthase 99.9 7.9E-26 1.7E-30 205.0 12.0 107 67-177 362-468 (563)
43 PRK08978 acetolactate synthase 99.9 8.4E-26 1.8E-30 204.1 11.8 107 67-177 349-455 (548)
44 PRK08617 acetolactate synthase 99.9 1.1E-25 2.5E-30 203.4 11.0 107 66-177 361-468 (552)
45 PRK07710 acetolactate synthase 99.9 1.6E-25 3.4E-30 203.4 11.9 107 67-177 372-478 (571)
46 PRK09259 putative oxalyl-CoA d 99.9 1.5E-25 3.2E-30 203.5 11.5 106 67-177 370-477 (569)
47 PRK07418 acetolactate synthase 99.9 2.1E-25 4.5E-30 204.3 12.0 104 67-177 384-488 (616)
48 PRK08322 acetolactate synthase 99.9 2.5E-25 5.4E-30 200.8 12.3 106 67-177 354-460 (547)
49 PRK08155 acetolactate synthase 99.9 2.4E-25 5.2E-30 201.8 12.0 107 67-177 367-473 (564)
50 PRK06276 acetolactate synthase 99.9 1.9E-25 4.1E-30 203.5 11.4 107 67-177 362-473 (586)
51 TIGR00118 acolac_lg acetolacta 99.9 1.3E-25 2.9E-30 203.2 10.3 107 67-177 360-466 (558)
52 KOG1185|consensus 99.9 2.1E-25 4.6E-30 195.1 10.3 109 65-177 375-484 (571)
53 CHL00099 ilvB acetohydroxyacid 99.9 2.8E-25 6E-30 202.4 11.6 105 67-177 380-484 (585)
54 PRK06163 hypothetical protein; 99.9 4.4E-25 9.5E-30 177.3 11.1 99 67-177 10-112 (202)
55 PRK06546 pyruvate dehydrogenas 99.9 3.9E-25 8.5E-30 201.2 12.0 106 67-177 356-462 (578)
56 PRK06882 acetolactate synthase 99.9 5.7E-25 1.2E-29 199.7 11.9 107 67-177 369-475 (574)
57 TIGR03394 indol_phenyl_DC indo 99.9 2.2E-24 4.9E-29 194.7 13.2 103 66-177 352-456 (535)
58 PRK07524 hypothetical protein; 99.9 1.8E-24 3.9E-29 195.0 12.0 105 68-177 356-461 (535)
59 PRK07064 hypothetical protein; 99.9 1.3E-24 2.9E-29 195.9 10.2 103 69-177 354-459 (544)
60 PRK06112 acetolactate synthase 99.9 2.9E-24 6.3E-29 195.3 12.2 106 67-177 384-491 (578)
61 cd02001 TPP_ComE_PpyrDC Thiami 99.9 3.1E-24 6.8E-29 165.9 9.3 93 73-177 2-96 (157)
62 PRK08266 hypothetical protein; 99.9 6E-24 1.3E-28 191.7 11.9 105 69-177 351-456 (542)
63 PRK08199 thiamine pyrophosphat 99.9 2E-23 4.3E-28 189.1 12.3 106 67-177 364-469 (557)
64 PRK07449 2-succinyl-5-enolpyru 99.9 9.3E-24 2E-28 191.4 10.0 106 67-177 373-478 (568)
65 cd03371 TPP_PpyrDC Thiamine py 99.9 1.6E-23 3.4E-28 166.4 9.9 95 73-177 2-103 (188)
66 cd00568 TPP_enzymes Thiamine p 99.9 3.4E-23 7.3E-28 159.4 10.6 99 75-177 2-100 (168)
67 PF02775 TPP_enzyme_C: Thiamin 99.9 1E-23 2.3E-28 161.4 7.2 81 92-177 1-82 (153)
68 TIGR03846 sulfopy_beta sulfopy 99.9 3.7E-23 8E-28 163.5 10.1 93 73-177 2-96 (181)
69 PRK07092 benzoylformate decarb 99.9 4.9E-23 1.1E-27 185.5 12.3 107 66-177 355-461 (530)
70 PRK08327 acetolactate synthase 99.9 4.5E-23 9.8E-28 187.4 10.4 103 67-177 382-486 (569)
71 cd02008 TPP_IOR_alpha Thiamine 99.9 3.8E-23 8.2E-28 162.5 8.2 94 71-177 11-106 (178)
72 cd03376 TPP_PFOR_porB_like Thi 99.9 1.9E-22 4E-27 165.5 6.4 102 70-177 11-117 (235)
73 cd03372 TPP_ComE Thiamine pyro 99.9 9E-22 2E-26 155.1 10.0 92 73-177 2-96 (179)
74 cd03375 TPP_OGFOR Thiamine pyr 99.9 7.3E-22 1.6E-26 157.4 8.9 92 73-177 12-106 (193)
75 cd02018 TPP_PFOR Thiamine pyro 99.8 1.6E-21 3.5E-26 160.0 6.9 106 71-177 12-124 (237)
76 KOG4166|consensus 99.8 9.2E-21 2E-25 164.5 7.8 108 65-177 467-578 (675)
77 TIGR03297 Ppyr-DeCO2ase phosph 99.8 2.6E-20 5.7E-25 161.2 10.7 98 70-177 172-276 (361)
78 PRK11867 2-oxoglutarate ferred 99.8 1.6E-20 3.5E-25 158.0 8.8 92 71-177 24-124 (286)
79 PRK09628 oorB 2-oxoglutarate-a 99.8 5.7E-20 1.2E-24 154.0 9.7 97 67-177 23-123 (277)
80 PRK05778 2-oxoglutarate ferred 99.8 2.2E-19 4.7E-24 152.0 10.2 96 69-177 27-125 (301)
81 TIGR02177 PorB_KorB 2-oxoacid: 99.8 3.4E-19 7.3E-24 149.9 9.8 80 83-177 26-108 (287)
82 PLN02980 2-oxoglutarate decarb 99.8 4.7E-19 1E-23 176.8 8.4 105 68-177 692-816 (1655)
83 TIGR03336 IOR_alpha indolepyru 99.8 4.7E-19 1E-23 162.1 7.7 94 71-177 363-458 (595)
84 PRK11866 2-oxoacid ferredoxin 99.8 1.4E-18 2.9E-23 145.8 9.1 93 71-177 14-114 (279)
85 PRK11869 2-oxoacid ferredoxin 99.8 2.1E-18 4.5E-23 144.7 9.9 82 82-177 32-115 (280)
86 COG3962 Acetolactate synthase 99.6 4.5E-16 9.8E-21 136.4 8.0 104 69-177 394-498 (617)
87 COG3960 Glyoxylate carboligase 99.5 2.3E-14 5.1E-19 122.2 7.7 107 66-177 366-473 (592)
88 TIGR03181 PDH_E1_alph_x pyruva 99.5 8.4E-14 1.8E-18 119.9 6.4 61 117-177 120-182 (341)
89 cd02012 TPP_TK Thiamine pyroph 99.5 1.3E-13 2.8E-18 114.1 7.0 61 117-177 103-165 (255)
90 cd02000 TPP_E1_PDC_ADC_BCADC T 99.4 1.6E-13 3.5E-18 115.7 7.0 62 116-177 101-164 (293)
91 TIGR03182 PDH_E1_alph_y pyruva 99.3 1.9E-12 4E-17 110.5 6.2 62 116-177 107-170 (315)
92 CHL00149 odpA pyruvate dehydro 99.3 3.1E-12 6.8E-17 110.2 6.5 67 108-177 119-195 (341)
93 cd02007 TPP_DXS Thiamine pyrop 99.2 1.3E-11 2.7E-16 98.7 6.4 61 117-177 73-135 (195)
94 PRK05899 transketolase; Review 99.2 4.4E-11 9.6E-16 110.3 6.9 61 117-177 116-188 (624)
95 PLN02374 pyruvate dehydrogenas 99.1 2.7E-10 5.9E-15 101.0 7.1 62 116-177 191-261 (433)
96 PRK05444 1-deoxy-D-xylulose-5- 99.0 4.5E-10 9.7E-15 102.9 6.4 61 117-177 115-178 (580)
97 PRK11865 pyruvate ferredoxin o 98.8 1.5E-08 3.3E-13 86.0 8.7 103 70-177 24-128 (299)
98 TIGR00173 menD 2-succinyl-5-en 98.8 7.1E-09 1.5E-13 91.7 5.4 67 67-133 364-431 (432)
99 COG1165 MenD 2-succinyl-6-hydr 98.8 2.4E-08 5.2E-13 89.9 8.3 103 69-177 372-475 (566)
100 PRK12571 1-deoxy-D-xylulose-5- 98.7 2.6E-08 5.6E-13 92.4 6.5 56 118-177 122-179 (641)
101 PRK11864 2-ketoisovalerate fer 98.7 7.5E-08 1.6E-12 81.7 8.2 101 72-177 26-129 (300)
102 COG1013 PorB Pyruvate:ferredox 98.4 7.8E-07 1.7E-11 75.4 6.0 55 119-177 70-125 (294)
103 PLN02269 Pyruvate dehydrogenas 98.3 1.5E-06 3.2E-11 75.7 5.9 61 117-177 136-198 (362)
104 PF13292 DXP_synthase_N: 1-deo 98.2 7.6E-06 1.7E-10 68.2 9.3 105 72-177 46-171 (270)
105 COG3959 Transketolase, N-termi 98.2 3.2E-06 6.9E-11 68.8 6.6 59 117-175 117-177 (243)
106 PRK12315 1-deoxy-D-xylulose-5- 98.2 3.4E-06 7.4E-11 77.6 6.9 61 117-177 111-173 (581)
107 TIGR00204 dxs 1-deoxy-D-xylulo 98.1 5.4E-06 1.2E-10 76.8 7.2 61 117-177 109-171 (617)
108 PLN02582 1-deoxy-D-xylulose-5- 98.1 4.9E-06 1.1E-10 77.7 6.4 110 68-177 75-204 (677)
109 PF00456 Transketolase_N: Tran 98.1 3.1E-06 6.6E-11 73.0 4.5 60 117-176 109-180 (332)
110 PTZ00089 transketolase; Provis 98.1 6.8E-06 1.5E-10 76.7 6.5 61 117-177 114-186 (661)
111 PLN02790 transketolase 98.0 1.2E-05 2.5E-10 75.0 7.2 62 116-177 102-175 (654)
112 cd02017 TPP_E1_EcPDC_like Thia 98.0 1.1E-05 2.3E-10 70.7 6.5 60 117-176 116-184 (386)
113 PRK12753 transketolase; Review 98.0 9.9E-06 2.1E-10 75.6 6.7 60 117-176 112-183 (663)
114 PLN02234 1-deoxy-D-xylulose-5- 98.0 1.4E-05 3E-10 74.3 6.3 61 117-177 175-237 (641)
115 PF00676 E1_dh: Dehydrogenase 98.0 2.1E-05 4.5E-10 66.8 6.9 61 117-177 99-161 (300)
116 PRK12754 transketolase; Review 98.0 1.9E-05 4.1E-10 73.7 7.1 62 116-177 111-185 (663)
117 TIGR00232 tktlase_bact transke 98.0 2E-05 4.4E-10 73.4 7.0 62 116-177 107-181 (653)
118 PRK13030 2-oxoacid ferredoxin 97.7 4.4E-05 9.6E-10 74.9 5.6 82 82-177 440-523 (1159)
119 COG1071 AcoA Pyruvate/2-oxoglu 97.7 8E-05 1.7E-09 64.7 6.4 61 117-177 134-197 (358)
120 TIGR00759 aceE pyruvate dehydr 97.7 9.9E-05 2.1E-09 70.3 7.0 62 116-177 186-256 (885)
121 TIGR03186 AKGDH_not_PDH alpha- 97.7 9E-05 2E-09 70.9 6.7 61 116-176 186-255 (889)
122 PRK09193 indolepyruvate ferred 97.7 6.5E-05 1.4E-09 73.7 5.7 81 83-177 454-536 (1165)
123 PLN02225 1-deoxy-D-xylulose-5- 97.7 0.00025 5.4E-09 66.5 9.0 106 69-177 122-248 (701)
124 KOG0523|consensus 97.6 0.00013 2.9E-09 66.5 6.6 64 114-177 113-179 (632)
125 COG4231 Indolepyruvate ferredo 97.6 8.3E-05 1.8E-09 68.3 5.2 55 118-177 427-482 (640)
126 PRK13029 2-oxoacid ferredoxin 97.5 0.00013 2.9E-09 71.5 5.5 80 84-177 469-550 (1186)
127 PRK13012 2-oxoacid dehydrogena 97.5 0.0003 6.5E-09 67.6 6.9 62 116-177 200-270 (896)
128 cd02016 TPP_E1_OGDC_like Thiam 97.3 0.00031 6.8E-09 58.8 4.8 61 117-177 111-182 (265)
129 COG1154 Dxs Deoxyxylulose-5-ph 97.3 0.00044 9.6E-09 63.4 5.5 107 70-177 48-175 (627)
130 cd02011 TPP_PK Thiamine pyroph 97.3 0.00042 9.2E-09 56.8 4.8 35 117-155 60-94 (227)
131 PRK09405 aceE pyruvate dehydro 97.2 0.00078 1.7E-08 64.7 6.8 61 117-177 193-262 (891)
132 cd03377 TPP_PFOR_PNO Thiamine 97.2 0.0016 3.4E-08 56.9 7.4 37 141-177 151-188 (365)
133 PRK05261 putative phosphoketol 96.6 0.0031 6.7E-08 60.0 5.3 34 118-155 141-174 (785)
134 KOG0225|consensus 96.6 0.0032 7E-08 54.2 4.6 62 116-177 162-225 (394)
135 PRK09404 sucA 2-oxoglutarate d 96.4 0.0042 9.1E-08 60.1 5.0 59 119-177 314-384 (924)
136 COG0021 TktA Transketolase [Ca 96.3 0.007 1.5E-07 56.0 5.7 60 117-176 114-185 (663)
137 TIGR00239 2oxo_dh_E1 2-oxoglut 96.0 0.013 2.8E-07 56.8 5.7 61 117-177 313-385 (929)
138 KOG1182|consensus 95.0 0.039 8.4E-07 47.5 4.6 59 119-177 193-254 (432)
139 PF09364 XFP_N: XFP N-terminal 94.6 0.034 7.3E-07 48.5 3.4 34 119-156 140-173 (379)
140 COG2609 AceE Pyruvate dehydrog 94.4 0.28 6E-06 46.4 8.9 62 115-176 188-258 (887)
141 TIGR02176 pyruv_ox_red pyruvat 93.7 0.14 3E-06 51.1 6.0 36 142-177 952-988 (1165)
142 PRK13982 bifunctional SbtC-lik 87.3 2.7 5.8E-05 38.2 7.5 90 70-175 233-340 (475)
143 PRK07119 2-ketoisovalerate fer 84.3 2 4.3E-05 37.4 5.0 47 124-176 60-106 (352)
144 COG3957 Phosphoketolase [Carbo 82.1 1.1 2.4E-05 42.4 2.7 29 119-151 153-181 (793)
145 cd07035 TPP_PYR_POX_like Pyrim 80.7 4.6 0.0001 30.1 5.3 48 124-175 46-93 (155)
146 PF01855 POR_N: Pyruvate flavo 79.6 1.9 4E-05 35.4 3.0 47 124-176 48-94 (230)
147 PRK08366 vorA 2-ketoisovalerat 79.0 4.3 9.4E-05 35.9 5.3 47 124-176 61-107 (390)
148 PF00455 DeoRC: DeoR C termina 77.9 21 0.00047 27.2 8.3 87 73-173 7-98 (161)
149 PRK05579 bifunctional phosphop 76.1 15 0.00032 32.7 7.8 84 70-169 168-266 (399)
150 PRK08659 2-oxoglutarate ferred 74.7 6.3 0.00014 34.6 5.1 47 124-176 60-106 (376)
151 TIGR00521 coaBC_dfp phosphopan 74.2 18 0.00039 32.0 7.8 70 69-154 163-238 (390)
152 TIGR03845 sulfopyru_alph sulfo 74.1 8.6 0.00019 29.5 5.2 33 141-174 58-91 (157)
153 cd07033 TPP_PYR_DXS_TK_like Py 73.5 21 0.00045 27.0 7.2 60 106-174 35-96 (156)
154 cd06586 TPP_enzyme_PYR Pyrimid 71.4 12 0.00027 27.4 5.4 45 124-174 47-92 (154)
155 PF04127 DFP: DNA / pantothena 68.9 8.4 0.00018 30.5 4.1 67 86-168 4-80 (185)
156 PRK09622 porA pyruvate flavodo 68.0 10 0.00022 33.6 4.9 47 124-176 68-114 (407)
157 PRK10411 DNA-binding transcrip 67.7 57 0.0012 26.6 9.0 87 73-173 81-171 (240)
158 PRK10906 DNA-binding transcrip 67.0 67 0.0014 26.4 9.3 88 73-173 79-170 (252)
159 PRK08367 porA pyruvate ferredo 66.9 11 0.00025 33.3 5.0 46 124-175 62-107 (394)
160 PRK10681 DNA-binding transcrip 66.1 60 0.0013 26.6 8.9 87 73-173 80-171 (252)
161 PRK09627 oorA 2-oxoglutarate-a 65.3 13 0.00028 32.7 5.0 47 124-176 59-105 (375)
162 PRK12374 putative dithiobiotin 62.8 44 0.00094 26.9 7.4 86 66-177 86-173 (231)
163 TIGR00204 dxs 1-deoxy-D-xylulo 59.2 30 0.00065 32.4 6.5 89 74-174 315-409 (617)
164 TIGR03710 OAFO_sf 2-oxoacid:ac 59.1 14 0.00031 34.1 4.3 47 124-176 249-295 (562)
165 COG3958 Transketolase, C-termi 57.5 22 0.00048 30.5 4.8 79 86-176 25-109 (312)
166 PF02776 TPP_enzyme_N: Thiamin 56.5 80 0.0017 24.0 7.6 59 109-175 39-98 (172)
167 TIGR03297 Ppyr-DeCO2ase phosph 55.2 19 0.00042 31.5 4.3 48 122-174 36-86 (361)
168 cd07034 TPP_PYR_PFOR_IOR-alpha 54.8 36 0.00077 25.4 5.3 11 142-152 91-101 (160)
169 cd01460 vWA_midasin VWA_Midasi 54.3 42 0.00092 28.2 6.0 35 143-177 166-204 (266)
170 PLN02225 1-deoxy-D-xylulose-5- 54.2 46 0.001 31.9 6.8 94 70-174 381-480 (701)
171 PLN02683 pyruvate dehydrogenas 53.8 66 0.0014 28.0 7.4 98 69-174 26-140 (356)
172 PRK09802 DNA-binding transcrip 53.4 1.3E+02 0.0028 25.0 8.9 87 73-173 94-185 (269)
173 COG0777 AccD Acetyl-CoA carbox 53.2 32 0.00069 29.3 5.0 59 118-176 131-204 (294)
174 PLN02582 1-deoxy-D-xylulose-5- 49.6 59 0.0013 31.0 6.8 89 74-174 361-455 (677)
175 COG0132 BioD Dethiobiotin synt 48.5 43 0.00094 27.4 5.1 85 67-177 88-174 (223)
176 TIGR02873 spore_ylxY probable 46.1 38 0.00082 28.3 4.5 37 139-175 81-119 (268)
177 TIGR02379 ECA_wecE TDP-4-keto- 45.8 1.6E+02 0.0034 25.5 8.5 86 73-168 34-120 (376)
178 PLN02234 1-deoxy-D-xylulose-5- 43.6 56 0.0012 31.0 5.6 89 74-174 362-456 (641)
179 PRK11892 pyruvate dehydrogenas 43.5 1.2E+02 0.0026 27.5 7.6 59 109-175 188-256 (464)
180 PF01041 DegT_DnrJ_EryC1: DegT 43.4 87 0.0019 26.8 6.5 91 73-173 28-119 (363)
181 PRK06732 phosphopantothenate-- 43.1 80 0.0017 25.5 5.9 37 108-152 15-51 (229)
182 TIGR02114 coaB_strep phosphopa 42.2 75 0.0016 25.7 5.6 35 108-150 14-48 (227)
183 PRK13509 transcriptional repre 41.8 1.9E+02 0.0042 23.6 8.4 29 73-101 81-110 (251)
184 PLN02974 adenosylmethionine-8- 41.7 43 0.00094 32.6 4.7 27 66-92 156-191 (817)
185 KOG1257|consensus 41.5 2.1E+02 0.0046 26.7 8.7 92 73-169 242-339 (582)
186 PLN02607 1-aminocyclopropane-1 40.6 58 0.0013 29.0 5.1 35 143-177 168-208 (447)
187 PRK10434 srlR DNA-bindng trans 38.2 2.2E+02 0.0049 23.3 9.1 29 73-101 79-108 (256)
188 KOG3128|consensus 38.1 11 0.00023 31.9 0.0 15 140-154 271-285 (298)
189 PRK00090 bioD dithiobiotin syn 37.9 1.2E+02 0.0025 23.9 6.0 26 69-94 87-112 (222)
190 PRK05444 1-deoxy-D-xylulose-5- 36.7 83 0.0018 29.1 5.6 89 74-174 284-378 (580)
191 smart00327 VWA von Willebrand 36.2 1.1E+02 0.0024 22.2 5.4 35 142-176 106-143 (177)
192 PF06707 DUF1194: Protein of u 35.2 61 0.0013 26.2 3.9 37 119-156 95-131 (205)
193 cd01476 VWA_integrin_invertebr 35.0 1.5E+02 0.0033 21.7 6.0 31 143-173 105-135 (163)
194 TIGR01162 purE phosphoribosyla 34.9 80 0.0017 24.5 4.4 36 141-176 76-113 (156)
195 PF12695 Abhydrolase_5: Alpha/ 33.2 27 0.00058 24.7 1.5 36 140-175 103-139 (145)
196 PRK11706 TDP-4-oxo-6-deoxy-D-g 32.6 3E+02 0.0064 23.6 8.1 20 74-93 35-54 (375)
197 PF01936 NYN: NYN domain; Int 32.6 35 0.00076 24.6 2.1 30 142-174 97-126 (146)
198 cd07038 TPP_PYR_PDC_IPDC_like 32.5 1.3E+02 0.0029 22.7 5.4 13 140-152 84-96 (162)
199 COG2894 MinD Septum formation 32.4 65 0.0014 26.9 3.7 31 119-153 12-43 (272)
200 TIGR00627 tfb4 transcription f 32.4 1.1E+02 0.0024 25.9 5.2 37 140-176 145-185 (279)
201 PRK12571 1-deoxy-D-xylulose-5- 32.4 1.1E+02 0.0025 28.8 5.8 60 105-174 356-418 (641)
202 KOG0256|consensus 31.8 1.1E+02 0.0023 27.7 5.2 84 83-177 144-234 (471)
203 PRK12315 1-deoxy-D-xylulose-5- 31.4 1.7E+02 0.0037 27.2 6.7 93 70-174 278-377 (581)
204 COG0674 PorA Pyruvate:ferredox 31.3 1E+02 0.0022 27.0 5.0 47 124-176 59-105 (365)
205 PF01522 Polysacc_deac_1: Poly 29.3 97 0.0021 21.4 3.9 37 140-176 4-40 (123)
206 COG1924 Activator of 2-hydroxy 29.2 1.2E+02 0.0026 27.1 5.0 52 78-134 336-387 (396)
207 PRK06855 aminotransferase; Val 29.0 3.4E+02 0.0074 23.8 8.0 29 149-177 151-179 (433)
208 PF12242 Eno-Rase_NADH_b: NAD( 28.6 84 0.0018 21.5 3.2 26 107-134 37-62 (78)
209 PRK08068 transaminase; Reviewe 27.8 1.7E+02 0.0037 25.0 5.9 22 150-171 150-171 (389)
210 PRK10518 alkaline phosphatase; 27.3 65 0.0014 29.4 3.2 25 140-167 68-92 (476)
211 cd00741 Lipase Lipase. Lipase 27.1 1.6E+02 0.0034 21.6 4.8 9 122-130 34-42 (153)
212 PRK07681 aspartate aminotransf 26.9 1.8E+02 0.0038 25.0 5.8 24 149-172 148-171 (399)
213 KOG1145|consensus 26.9 59 0.0013 30.6 2.8 88 79-174 169-260 (683)
214 cd01521 RHOD_PspE2 Member of t 26.6 1.3E+02 0.0028 20.8 4.1 32 139-170 62-93 (110)
215 cd06167 LabA_like LabA_like pr 26.4 58 0.0012 23.8 2.3 30 142-174 101-130 (149)
216 COG0436 Aspartate/tyrosine/aro 26.0 96 0.0021 27.2 4.0 25 151-177 147-171 (393)
217 TIGR02176 pyruv_ox_red pyruvat 25.4 1.2E+02 0.0025 31.0 4.8 46 124-175 63-108 (1165)
218 PRK09620 hypothetical protein; 24.4 1.5E+02 0.0032 24.1 4.6 51 86-152 4-54 (229)
219 PF13020 DUF3883: Domain of un 23.9 95 0.0021 21.1 2.9 28 148-175 52-79 (91)
220 PRK06290 aspartate aminotransf 23.9 2.1E+02 0.0045 25.0 5.7 26 148-173 160-185 (410)
221 PHA02031 putative DnaG-like pr 23.8 3.9E+02 0.0086 22.5 7.0 83 84-175 158-242 (266)
222 COG1063 Tdh Threonine dehydrog 23.5 1.4E+02 0.0031 25.5 4.5 29 144-174 171-199 (350)
223 PF03959 FSH1: Serine hydrolas 23.5 25 0.00053 27.9 -0.2 19 118-136 104-122 (212)
224 COG4032 Predicted thiamine-pyr 23.4 54 0.0012 25.4 1.6 42 127-174 57-99 (172)
225 PF00731 AIRC: AIR carboxylase 23.4 49 0.0011 25.4 1.4 13 71-83 40-52 (150)
226 cd07036 TPP_PYR_E1-PDHc-beta_l 23.2 3.5E+02 0.0076 20.7 7.5 63 104-174 37-110 (167)
227 PF04122 CW_binding_2: Putativ 22.9 2.4E+02 0.0053 18.9 5.3 7 143-149 51-57 (92)
228 cd01453 vWA_transcription_fact 22.6 3.3E+02 0.0071 20.9 6.1 35 141-175 107-144 (183)
229 PRK09212 pyruvate dehydrogenas 21.8 3.1E+02 0.0068 23.4 6.3 36 107-149 47-83 (327)
230 COG1923 Hfq Uncharacterized ho 21.8 91 0.002 21.3 2.3 18 159-176 11-28 (77)
231 PRK02645 ppnK inorganic polyph 21.6 59 0.0013 27.6 1.7 18 143-160 60-77 (305)
232 PRK12270 kgd alpha-ketoglutara 21.1 1.4E+02 0.0031 30.2 4.3 52 126-177 626-689 (1228)
233 CHL00144 odpB pyruvate dehydro 20.9 4.2E+02 0.0092 22.6 6.9 39 104-149 44-83 (327)
234 cd01716 Hfq Hfq, an abundant, 20.5 1.1E+02 0.0024 19.9 2.4 17 160-176 4-20 (61)
235 PRK07366 succinyldiaminopimela 20.5 3.6E+02 0.0078 22.9 6.4 27 149-177 147-173 (388)
236 PF02737 3HCDH_N: 3-hydroxyacy 20.4 1.3E+02 0.0028 23.3 3.3 40 73-113 94-133 (180)
237 PRK07324 transaminase; Validat 20.4 2.7E+02 0.0058 23.8 5.6 17 151-167 137-153 (373)
238 TIGR03336 IOR_alpha indolepyru 20.1 1.7E+02 0.0037 27.2 4.6 23 67-89 25-48 (595)
239 PF00781 DAGK_cat: Diacylglyce 20.1 44 0.00096 24.1 0.6 22 142-163 56-77 (130)
240 TIGR02383 Hfq RNA chaperone Hf 20.1 1.2E+02 0.0025 19.8 2.5 18 159-176 7-24 (61)
No 1
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.97 E-value=1.9e-31 Score=213.50 Aligned_cols=107 Identities=25% Similarity=0.362 Sum_probs=97.7
Q ss_pred CCCCCCHHHHHHHhhhhCCCCceEEccCc-chhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDNCIIVGEGA-NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~~iiv~dg~-~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
++.+++|.+++++|++.+|++++|++|++ +.+|+. +++....|++++.++++|+|||++|+||||++| +|+|+|
T Consensus 4 ~~~~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la----~p~~~v 78 (202)
T cd02006 4 DDVPIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGA-QMLHVYKPRHWINCGQAGPLGWTVPAALGVAAA----DPDRQV 78 (202)
T ss_pred CCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHH-HhcCcCCCCeEEccCCccchhhhhHHHHhHHhh----CCCCeE
Confidence 35579999999999999999999999955 454554 457888999999999999999999999999999 799999
Q ss_pred EEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 145 VCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 145 v~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+++|||||+|++|||+|++||++|+++||+||
T Consensus 79 v~i~GDG~f~m~~~eL~Ta~~~~lpviivV~NN 111 (202)
T cd02006 79 VALSGDYDFQFMIEELAVGAQHRIPYIHVLVNN 111 (202)
T ss_pred EEEEeChHhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 999999999999999999999999999999999
No 2
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.97 E-value=2.4e-30 Score=206.44 Aligned_cols=106 Identities=30% Similarity=0.487 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy15960 68 VPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 147 (177)
Q Consensus 68 ~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i 147 (177)
++++|.++++.|++.+++++++++|+++...+..+++....|.+|+.++++|+|||++|+|+||++| .|+|+|||+
T Consensus 2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~p~r~vv~i 77 (196)
T cd02013 2 NPMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAA----APDRPVVAI 77 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHh----CCCCcEEEE
Confidence 4689999999999999999999999554334444568889999999999999999999999999999 799999999
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|||||+|++|||+|++||++|+++||+||
T Consensus 78 ~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN 107 (196)
T cd02013 78 AGDGAWGMSMMEIMTAVRHKLPVTAVVFRN 107 (196)
T ss_pred EcchHHhccHHHHHHHHHhCCCeEEEEEEC
Confidence 999999999999999999999999999999
No 3
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=229.71 Aligned_cols=146 Identities=23% Similarity=0.292 Sum_probs=117.1
Q ss_pred cceeCCcchHHHHHh-cc-ccccccccCCCCccc-chhhhhhccCCCCCCCHHHHHHHhhhhCCCCceEEcc-CcchhHH
Q psy15960 24 VGARRRIRMRDLIQR-AK-VEEGEMKVGGNMRGV-DSAVEKMIQDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDI 99 (177)
Q Consensus 24 ~~~~~~v~~~~~l~~-~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~ 99 (177)
...|.++.|+++|++ ++ ++...... ...+. ...++........||++.++|+++++++.+++||++| |++.+.+
T Consensus 316 ~~~f~~l~m~~~L~~L~~~i~~~~~~~--~~~~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~ 393 (557)
T COG3961 316 DAVFTNLSMKDALQELAKKIDKRNLSA--PPVAYPARTPPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGA 393 (557)
T ss_pred ccccCCeeHHHHHHHHHHHhhhcccCC--CCccCCCCCCCCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEccccccccc
Confidence 567889999999999 55 55444321 11111 1111122334567899999999999999999999999 5555433
Q ss_pred HHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 100 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 100 ~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
. -..++...+++.+..||||||++|||+|+++| .|+||||+|+||||||||+||++|++|++++++|||+||
T Consensus 394 ~--~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A----~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~ifvlNN 465 (557)
T COG3961 394 L--DIRLPKGATFISQPLWGSIGYTLPAALGAALA----APDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNN 465 (557)
T ss_pred e--eeecCCCCeEEcccchhhcccccHhhhhhhhc----CCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEEEEcC
Confidence 2 25667778999999999999999999999999 699999999999999999999999999999999999999
No 4
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.96 E-value=3.5e-29 Score=197.75 Aligned_cols=104 Identities=32% Similarity=0.509 Sum_probs=94.4
Q ss_pred CCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 70 LNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 70 l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
++|.+++++|++.+|+++++++|+++...+..++++.+.|.+|+.++++|+|||++|+|+|+++| .|+|+||+++|
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~G 76 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVA----RPDKTVICIDG 76 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHh----CCCCeEEEEEc
Confidence 57889999999999999999999554433444557888899999999999999999999999999 78999999999
Q ss_pred chhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 150 DSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 150 DGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
||||+|++|||+|++||++|+++||+||
T Consensus 77 DG~f~~~~~eL~ta~~~~lpi~ivV~nN 104 (186)
T cd02015 77 DGSFQMNIQELATAAQYNLPVKIVILNN 104 (186)
T ss_pred ccHHhccHHHHHHHHHhCCCeEEEEEEC
Confidence 9999999999999999999999999999
No 5
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.95 E-value=2.3e-28 Score=192.20 Aligned_cols=101 Identities=30% Similarity=0.467 Sum_probs=91.9
Q ss_pred HHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcc
Q psy15960 72 YYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 150 (177)
Q Consensus 72 ~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GD 150 (177)
|.+++++|++.+++++++++| |.+..|. .+++....|++++.+.++|+|||++|+|+||++| .|+++||+|+||
T Consensus 1 p~~~~~~l~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GD 75 (177)
T cd02010 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWM-ARYYRTYAPNTCLISNGLATMGVALPGAIGAKLV----YPDRKVVAVSGD 75 (177)
T ss_pred CHHHHHHHHHHCCCCcEEEecCcHHHHHH-HHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHh----CCCCcEEEEEcc
Confidence 357899999999999999999 5555544 4557888899999999999999999999999999 799999999999
Q ss_pred hhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 151 SAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 151 Gsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|||+|+.|||+|++||++|+++||+||
T Consensus 76 G~f~m~~~eL~ta~~~~l~vi~vV~NN 102 (177)
T cd02010 76 GGFMMNSQELETAVRLKIPLVVLIWND 102 (177)
T ss_pred hHHHhHHHHHHHHHHHCCCeEEEEEEC
Confidence 999999999999999999999999999
No 6
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.95 E-value=2.7e-28 Score=195.79 Aligned_cols=100 Identities=23% Similarity=0.329 Sum_probs=91.9
Q ss_pred HHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcch
Q psy15960 73 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 151 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG 151 (177)
.+++++|++.+++++++++| |.+..|..+ +++...|.+++.+.++|+|||++|+|+||++| .|+++||+++|||
T Consensus 2 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDG 76 (205)
T cd02003 2 TEVLGALNEAIGDDDVVINAAGSLPGDLHK-LWRARTPGGYHLEYGYSCMGYEIAAGLGAKLA----KPDREVYVLVGDG 76 (205)
T ss_pred hhHHHHHHHhCCCCCEEEECCCcchHHHHH-hCCcCCCCcEEcCCCcchhhhHHHHHHHHHHh----CCCCeEEEEEccc
Confidence 46889999999999999999 666665554 57888899999999999999999999999999 7999999999999
Q ss_pred hhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 152 AFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 152 sf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
||+|++|||+|++||++|+++||+||
T Consensus 77 sf~m~~~eL~Ta~~~~lpv~ivV~NN 102 (205)
T cd02003 77 SYLMLHSEIVTAVQEGLKIIIVLFDN 102 (205)
T ss_pred hhhccHHHHHHHHHcCCCCEEEEEEC
Confidence 99999999999999999999999999
No 7
>PLN02573 pyruvate decarboxylase
Probab=99.95 E-value=4e-28 Score=220.91 Aligned_cols=152 Identities=18% Similarity=0.270 Sum_probs=113.8
Q ss_pred CcccccCcceeCCcchHHHHHh-cc-ccccccccCCCCcccchhh---hh-hccCCCCCCCHHHHHHHhhhhCCCCceEE
Q psy15960 17 GDEEVKRVGARRRIRMRDLIQR-AK-VEEGEMKVGGNMRGVDSAV---EK-MIQDESVPLNYYAAIHAVQVSIPDNCIIV 90 (177)
Q Consensus 17 ~~~~~~~~~~~~~v~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~~l~~~l~~~~iiv 90 (177)
|..++.+...+..+.++++|++ ++ ++.....+ ..|.... .. .....+.+|++.++++.|++.+++++||+
T Consensus 325 d~~~i~~~~~~~~~~~~~~l~~L~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv 400 (578)
T PLN02573 325 DRVTIGNGPAFGCVLMKDFLEALAKRVKKNTTAY----ENYKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVI 400 (578)
T ss_pred CEEEECCcceECCcCHHHHHHHHHHHhhcccccc----ccccccccCcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEE
Confidence 4455554333445568888888 55 43321111 0111110 00 01123457999999999999999999999
Q ss_pred ccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCc
Q psy15960 91 GEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPV 170 (177)
Q Consensus 91 ~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpv 170 (177)
+|+++++ +..++++.+.+..|+.+.++|+|||++|+||||++| .|+|+||+++|||||+|++|||+|++||++|+
T Consensus 401 ~D~G~~~-~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA----~p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpv 475 (578)
T PLN02573 401 AETGDSW-FNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQA----APDKRVIACIGDGSFQVTAQDVSTMIRCGQKS 475 (578)
T ss_pred Eecccch-hhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHh----CCCCceEEEEeccHHHhHHHHHHHHHHcCCCC
Confidence 9965553 443456666777888899999999999999999999 79999999999999999999999999999999
Q ss_pred EEEEEeC
Q psy15960 171 ILVILYN 177 (177)
Q Consensus 171 iiiVlNN 177 (177)
++||+||
T Consensus 476 v~vV~NN 482 (578)
T PLN02573 476 IIFLINN 482 (578)
T ss_pred EEEEEeC
Confidence 9999999
No 8
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.95 E-value=6.6e-28 Score=190.55 Aligned_cols=104 Identities=30% Similarity=0.374 Sum_probs=95.3
Q ss_pred CCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy15960 69 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ 148 (177)
Q Consensus 69 ~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~ 148 (177)
|+++.++++.|++.+++++++++|+++..+.. +++....|++++.++.+|+||+++|+|+||++| .|+++|++++
T Consensus 1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala----~~~~~vv~i~ 75 (183)
T cd02005 1 PLTQARLWQQVQNFLKPNDILVAETGTSWFGA-LDLKLPKGTRFISQPLWGSIGYSVPAALGAALA----APDRRVILLV 75 (183)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCchHHHhh-hhccCCCCCEEEeccchhhHhhhHHHHHHHHHh----CCCCeEEEEE
Confidence 58999999999999999999999955445544 457778889999999999999999999999999 6899999999
Q ss_pred cchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 149 GDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 149 GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|||||+|++|||+|++||++|+++||+||
T Consensus 76 GDG~f~~~~~el~ta~~~~~p~~ivV~nN 104 (183)
T cd02005 76 GDGSFQMTVQELSTMIRYGLNPIIFLINN 104 (183)
T ss_pred CCchhhccHHHHHHHHHhCCCCEEEEEEC
Confidence 99999999999999999999999999999
No 9
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.95 E-value=8.7e-28 Score=187.40 Aligned_cols=102 Identities=62% Similarity=1.010 Sum_probs=92.5
Q ss_pred HHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcch
Q psy15960 72 YYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 151 (177)
Q Consensus 72 ~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG 151 (177)
|.+++++|++.+|+++++++|+++...++.+++..+.|.+++.++.+|+||+++|+|+|+++| .|+|+|++++|||
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la----~~~~~vv~i~GDG 76 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALA----RPDKRVVLVEGDG 76 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHh----CCCCeEEEEEcch
Confidence 467999999999999999999554434445568888999999999999999999999999999 7999999999999
Q ss_pred hhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 152 AFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 152 sf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
||+|+.|||+|++++++|+++||+||
T Consensus 77 ~f~~~~~el~ta~~~~lpv~ivv~NN 102 (172)
T cd02004 77 AFGFSGMELETAVRYNLPIVVVVGNN 102 (172)
T ss_pred hhcCCHHHHHHHHHcCCCEEEEEEEC
Confidence 99999999999999999999999998
No 10
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.95 E-value=8.3e-28 Score=219.14 Aligned_cols=107 Identities=24% Similarity=0.331 Sum_probs=98.4
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.+++|.++++.|++.++++++|+.|+|+...++.+++....|++|+.+++||+|||++|+||||++| .|+|+||+
T Consensus 366 ~~~l~p~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA----~pdr~Vv~ 441 (588)
T TIGR01504 366 NVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVA 441 (588)
T ss_pred CCCcCHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhh----CCCCcEEE
Confidence 45799999999999999999999999665544555568888999999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||||++|||+|++||++|+++||+||
T Consensus 442 i~GDG~f~m~~~EL~Ta~r~~lpvv~iV~NN 472 (588)
T TIGR01504 442 LSGDYDFQFMIEELAVGAQHNIPYIHVLVNN 472 (588)
T ss_pred EEcchHhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 11
>PRK12474 hypothetical protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=215.08 Aligned_cols=107 Identities=29% Similarity=0.367 Sum_probs=95.3
Q ss_pred CCCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
.+.++++.+++++|++.+++++|++.|+++...+...+++...|.+++.+.+ |+|||++|+||||++| +|+|+||
T Consensus 337 ~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~-gsmG~glpaAiGa~lA----~p~r~vv 411 (518)
T PRK12474 337 PKGALNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMSYDRARPHTHLPLTG-GSIGQGLPLAAGAAVA----APDRKVV 411 (518)
T ss_pred CCCCcCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHhhcccCCCCEEccCC-CccCccHHHHHHHHHH----CCCCcEE
Confidence 3457999999999999999999999995544344455577788888887654 9999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||||++|||+|++||++|+++||+||
T Consensus 412 ~i~GDG~f~m~~qEL~Ta~r~~lpv~iiV~NN 443 (518)
T PRK12474 412 CPQGDGGAAYTMQALWTMARENLDVTVVIFAN 443 (518)
T ss_pred EEEcCchhcchHHHHHHHHHHCCCcEEEEEcC
Confidence 99999999999999999999999999999999
No 12
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.95 E-value=2.7e-27 Score=185.93 Aligned_cols=104 Identities=31% Similarity=0.401 Sum_probs=95.1
Q ss_pred CCCHHHHHHHhhhhCCCCceEEccC-cchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy15960 69 PLNYYAAIHAVQVSIPDNCIIVGEG-ANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 147 (177)
Q Consensus 69 ~l~~~~~~~~l~~~l~~~~iiv~dg-~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i 147 (177)
+++|.+++++|++.+++++++++|+ .+..+. .+++....|++++.+..+|+|||++|+|+|+++| +|+++||++
T Consensus 1 ~~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a----~~~~~vv~i 75 (178)
T cd02014 1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWA-ARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLA----YPDRQVIAL 75 (178)
T ss_pred CCCHHHHHHHHHhHCCCCeEEEEcCcHHHHHH-HHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHh----CCCCcEEEE
Confidence 4789999999999999999999995 454444 4457888899999999999999999999999999 689999999
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|||||+|+.|||+|++++++|+++||+||
T Consensus 76 ~GDG~f~~~~~el~t~~~~~lp~~~iv~NN 105 (178)
T cd02014 76 SGDGGFAMLMGDLITAVKYNLPVIVVVFNN 105 (178)
T ss_pred EcchHHHhhHHHHHHHHHhCCCcEEEEEEC
Confidence 999999999999999999999999999999
No 13
>PRK06154 hypothetical protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=215.14 Aligned_cols=108 Identities=32% Similarity=0.562 Sum_probs=96.9
Q ss_pred CCCCCCHHHHHHHhhhhCCC-CceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 66 ESVPLNYYAAIHAVQVSIPD-NCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~-~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
.+.+|+|.+++++|++.+++ +.|++.|+|+...+..+++....|++|+.++.+|+|||++|+||||++| +|+|+|
T Consensus 377 ~~~~l~p~~~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la----~p~r~V 452 (565)
T PRK06154 377 DSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLA----RPDALV 452 (565)
T ss_pred CCCCcCHHHHHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHh----CCCCcE
Confidence 34579999999999999975 7788889555444545568888999999998999999999999999999 799999
Q ss_pred EEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 145 VCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 145 v~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+++|||||||++|||+|++||++|+++||+||
T Consensus 453 v~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~NN 485 (565)
T PRK06154 453 INLWGDAAFGMTGMDFETAVRERIPILTILLNN 485 (565)
T ss_pred EEEEcchHHhccHHHHHHHHHhCCCeEEEEEEC
Confidence 999999999999999999999999999999999
No 14
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.95 E-value=1.7e-27 Score=186.82 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=91.6
Q ss_pred CHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhc-cCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 71 NYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLN-NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 71 ~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~-~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
+..+++++|++.+|++.+++.|+++...+...+++. +.|.+++.+.++++||+++|+||||++| . +|+||+++|
T Consensus 2 ~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la----~-~~~Vv~i~G 76 (175)
T cd02009 2 TEPALARALPDHLPEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALA----T-DKPTVLLTG 76 (175)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhc----C-CCCEEEEEe
Confidence 345799999999999999999955554454556777 8899999999999999999999999998 4 899999999
Q ss_pred chhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 150 DSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 150 DGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
||||+|++|||+|++||++|+++||+||
T Consensus 77 DGsf~m~~~eL~ta~~~~l~v~ivVlNN 104 (175)
T cd02009 77 DLSFLHDLNGLLLGKQEPLNLTIVVINN 104 (175)
T ss_pred hHHHHHhHHHHHhccccCCCeEEEEEEC
Confidence 9999999999999999999999999999
No 15
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.94 E-value=3.4e-27 Score=215.00 Aligned_cols=107 Identities=24% Similarity=0.411 Sum_probs=98.4
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.+|+|..+++.|++.+++++|++.|+|+...+..+++.++.|.+|+.++++|+|||++|+||||++| .|+|+||+
T Consensus 385 ~~~i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA----~p~r~Vv~ 460 (587)
T PRK06965 385 SEIIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMA----HPDDDVVC 460 (587)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh----CCCCcEEE
Confidence 45799999999999999999999999665544455568888999999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||||++|||+|++||++|+++||+||
T Consensus 461 i~GDGsf~m~~~eL~Ta~r~~lpviivV~NN 491 (587)
T PRK06965 461 ITGEGSIQMCIQELSTCLQYDTPVKIISLNN 491 (587)
T ss_pred EEcchhhhcCHHHHHHHHHcCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 16
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=3.5e-27 Score=213.59 Aligned_cols=103 Identities=41% Similarity=0.638 Sum_probs=97.1
Q ss_pred CCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy15960 70 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ 148 (177)
Q Consensus 70 l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~ 148 (177)
.+|.++++.|++.+++|+||++| |.+.+|+.+ +++...|++++.++++|+||||+|+||||++| .|+|+||+|+
T Consensus 359 ~~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~-~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla----~P~r~Vv~i~ 433 (550)
T COG0028 359 IKPQYVIKVLRELLPDDAIVVTDVGQHQMWAAR-YFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLA----APDRKVVAIA 433 (550)
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHH-hcccCCCCcEEcCCCCccccchHHHHHHHHhh----CCCCcEEEEE
Confidence 37999999999999999999999 777776665 48888999999999999999999999999999 7999999999
Q ss_pred cchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 149 GDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 149 GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|||||+|++|||+|++||++|++++|+||
T Consensus 434 GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN 462 (550)
T COG0028 434 GDGGFMMNGQELETAVRYGLPVKIVVLNN 462 (550)
T ss_pred cccHHhccHHHHHHHHHhCCCEEEEEEEC
Confidence 99999999999999999999999999999
No 17
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.94 E-value=4e-27 Score=213.86 Aligned_cols=107 Identities=28% Similarity=0.430 Sum_probs=97.9
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
..+|++..+++.|++.++++++++.|+++...++.+++.+..|.+|+.+++||+|||++|+||||++| .|+|+||+
T Consensus 369 ~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la----~p~~~vv~ 444 (574)
T PRK07979 369 SEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA----LPEETVVC 444 (574)
T ss_pred CCCcCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHh----CCCCeEEE
Confidence 34799999999999999999999999655444444568888999999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 445 i~GDG~f~m~~~eL~Ta~r~~l~v~ivV~NN 475 (574)
T PRK07979 445 VTGDGSIQMNIQELSTALQYELPVLVLNLNN 475 (574)
T ss_pred EEcchhhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 18
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.94 E-value=5.3e-27 Score=213.28 Aligned_cols=107 Identities=28% Similarity=0.413 Sum_probs=98.3
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.+++++|++.+++++|++.|+|+...+..+++..+.|++|+.++++|+|||++|+||||++| +|+|+||+
T Consensus 378 ~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la----~p~~~Vv~ 453 (579)
T TIGR03457 378 GNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIA----APDRPVVA 453 (579)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhh----CCCCcEEE
Confidence 45799999999999999999999999555444555568889999999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 454 i~GDG~f~m~~~eL~Tavr~~lpvi~vV~NN 484 (579)
T TIGR03457 454 YAGDGAWGMSMNEIMTAVRHDIPVTAVVFRN 484 (579)
T ss_pred EEcchHHhccHHHHHHHHHhCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 19
>PRK07586 hypothetical protein; Validated
Probab=99.94 E-value=6.5e-27 Score=209.78 Aligned_cols=106 Identities=27% Similarity=0.323 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.+++++|++.+|+++|++.|+++...+..+++....|.+|+.+.+ |+|||++|+|+||++| .|+|+||+
T Consensus 334 ~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA----~p~r~Vv~ 408 (514)
T PRK07586 334 TGALTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVA----CPDRKVLA 408 (514)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHh----CCCCeEEE
Confidence 457999999999999999999999995544344445577888899987665 9999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 409 i~GDGsf~m~~~EL~Ta~~~~lpv~ivV~NN 439 (514)
T PRK07586 409 LQGDGSAMYTIQALWTQARENLDVTTVIFAN 439 (514)
T ss_pred EEechHHHhHHHHHHHHHHcCCCCEEEEEeC
Confidence 9999999999999999999999999999999
No 20
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.94 E-value=3.3e-27 Score=214.30 Aligned_cols=107 Identities=25% Similarity=0.381 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.+++++|++.++++++++.|+|+...+..+++.++.|.+|+.+++||+|||++|+||||++| .|+|+||+
T Consensus 366 ~~~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA----~p~~~Vv~ 441 (566)
T PRK07282 366 ERVVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA----NPDKEVIL 441 (566)
T ss_pred CCCcCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheehee----cCCCcEEE
Confidence 45799999999999999999999999655444445568888999999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||||++|||+|++||++|+++||+||
T Consensus 442 i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN 472 (566)
T PRK07282 442 FVGDGGFQMTNQELAILNIYKVPIKVVMLNN 472 (566)
T ss_pred EEcchhhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 21
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.94 E-value=5.5e-27 Score=212.98 Aligned_cols=107 Identities=25% Similarity=0.409 Sum_probs=98.1
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.+++..|++.++++++++.|+++...++.+++.++.|.+|+.+++||+|||++|+||||++| .|+|+||+
T Consensus 369 ~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~vv~ 444 (572)
T PRK08979 369 SERIKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFA----MPDETVVC 444 (572)
T ss_pred CCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhh----CCCCeEEE
Confidence 45799999999999999999999999665444455568888999999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 445 i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN 475 (572)
T PRK08979 445 VTGDGSIQMNIQELSTALQYDIPVKIINLNN 475 (572)
T ss_pred EEcchHhhccHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 22
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.94 E-value=1e-26 Score=181.91 Aligned_cols=102 Identities=35% Similarity=0.492 Sum_probs=92.6
Q ss_pred CCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy15960 70 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ 148 (177)
Q Consensus 70 l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~ 148 (177)
++|.+++++|++.+|+++++++| |.+..+. ..+++...|.+++.+.+ |+||+++|+|+|+++| .|+++|++++
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~-~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala----~~~~~vv~i~ 74 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPL-RDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALA----NPDRKVVAII 74 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCcccHHH-HHhcccCCCCCeeccCC-ccccchHHHHHHHHhc----CCCCeEEEEE
Confidence 47889999999999999999999 4555444 45577778999998888 9999999999999999 6899999999
Q ss_pred cchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 149 GDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 149 GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|||||+|+.+||+|++++++|+++||+||
T Consensus 75 GDG~f~~~~~el~ta~~~~~p~~~iV~nN 103 (178)
T cd02002 75 GDGSFMYTIQALWTAARYGLPVTVVILNN 103 (178)
T ss_pred cCchhhccHHHHHHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999999
No 23
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.94 E-value=8.2e-27 Score=211.85 Aligned_cols=107 Identities=23% Similarity=0.378 Sum_probs=98.3
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.+++|.++++.|++.+++++|++.|+++...+..+++....|.+|+.++++|+|||++|+||||++| .|+|+||+
T Consensus 371 ~~~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la----~p~r~Vv~ 446 (574)
T PRK06466 371 GGIIKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLA----FPDQDVAC 446 (574)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHh----CCCCeEEE
Confidence 45799999999999999999999999665544555668888899999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 447 i~GDG~f~m~~~eL~Ta~r~~lpv~ivV~NN 477 (574)
T PRK06466 447 VTGEGSIQMNIQELSTCLQYGLPVKIINLNN 477 (574)
T ss_pred EEcchhhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 24
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.94 E-value=8.9e-27 Score=212.64 Aligned_cols=107 Identities=26% Similarity=0.324 Sum_probs=97.4
Q ss_pred CCCCCHHHHHHHhhhhCC-CCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 67 SVPLNYYAAIHAVQVSIP-DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~-~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
+.++++.++++.|++.++ ++.+++.|+|+...+..++++++.|.+|+.+++||+|||++|+||||++| .|+|+||
T Consensus 377 ~~~l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA----~p~r~Vv 452 (595)
T PRK09107 377 DDVIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIA----HPDALVI 452 (595)
T ss_pred CCCcCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHh----CCCCeEE
Confidence 457999999999999997 47788899665545555668889999999999999999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|+|||||||++|||+|++||++|+++||+||
T Consensus 453 ~i~GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN 484 (595)
T PRK09107 453 DIAGDASIQMCIQEMSTAVQYNLPVKIFILNN 484 (595)
T ss_pred EEEcCchhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 99999999999999999999999999999999
No 25
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=211.83 Aligned_cols=106 Identities=26% Similarity=0.380 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
+.+|+|.+++++|++.+++++|+++| |.+..|.. +++.++.+.+++.++++|+|||++|+||||++| .|+|+||
T Consensus 363 ~~~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la----~p~~~Vv 437 (597)
T PRK08273 363 ADPVNPQRVFWELSPRLPDNAILTADSGSCANWYA-RDLRMRRGMMASLSGTLATMGPAVPYAIAAKFA----HPDRPVI 437 (597)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHH-HhCCCCCCCeEEecCccccccchHHHHHHHHHh----CCCCcEE
Confidence 45799999999999999999999999 44455554 457888888999999999999999999999999 7999999
Q ss_pred EEEcchhhccc-HHHHHHHHHc-----CCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFS-GMELETLVRY-----RLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~-~qEL~Ta~r~-----~lpviiiVlNN 177 (177)
+|+|||||+|+ +|||+|++|| ++|+++||+||
T Consensus 438 ~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpviivV~NN 475 (597)
T PRK08273 438 ALVGDGAMQMNGMAELITVAKYWRQWSDPRLIVLVLNN 475 (597)
T ss_pred EEEcchhHhccchHHHHHHHHHhhcccCCCEEEEEEeC
Confidence 99999999999 6999999999 89999999999
No 26
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.94 E-value=1.3e-26 Score=210.48 Aligned_cols=106 Identities=26% Similarity=0.365 Sum_probs=96.8
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
..++++..+++.|++.+++++++++| |.+..|.. .++....|.+|+.+.++|+|||++|+||||++| .|+|+||
T Consensus 356 ~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~-~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la----~p~r~vv 430 (574)
T PRK09124 356 GKPIHPQYLARQISEFAADDAIFTCDVGTPTVWAA-RYLKMNGKRRLLGSFNHGSMANAMPQALGAQAA----HPGRQVV 430 (574)
T ss_pred CCcCCHHHHHHHHHhhcCCCcEEEEcCCHHHHHHH-HhcccCCCCeEEecCCcccccchHHHHHHHHHh----CCCCeEE
Confidence 35799999999999999999999999 54554554 457788899999999999999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||||++|||+|++||++|+++||+||
T Consensus 431 ~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN 462 (574)
T PRK09124 431 ALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNN 462 (574)
T ss_pred EEecCcHHhccHHHHHHHHHhCCCeEEEEEeC
Confidence 99999999999999999999999999999999
No 27
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.94 E-value=6.9e-27 Score=210.95 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=96.1
Q ss_pred CCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy15960 68 VPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 147 (177)
Q Consensus 68 ~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i 147 (177)
.+|++.++++.|++.++++++|++|+|+..+.. .++..+.+.+++.+.++|+|||++|+||||++| .|+|+||++
T Consensus 354 ~~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~vv~i 428 (539)
T TIGR03393 354 SALSQENFWQTLQTFLRPGDIILADQGTSAFGA-ADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTA----CPNRRVILL 428 (539)
T ss_pred CccCHHHHHHHHHHhcCCCCEEEEccCchhhhh-hhccCCCCCeEEechhhhhhhhHHHHHHHHHhc----CCCCCeEEE
Confidence 469999999999999999999999955444544 457788888999999999999999999999999 799999999
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|||||||++|||+|++||++|+++||+||
T Consensus 429 ~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN 458 (539)
T TIGR03393 429 IGDGSAQLTIQELGSMLRDKQHPIILVLNN 458 (539)
T ss_pred EcCcHHHhHHHHHHHHHHcCCCCEEEEEeC
Confidence 999999999999999999999999999999
No 28
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.94 E-value=1.3e-26 Score=210.66 Aligned_cols=106 Identities=30% Similarity=0.426 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCc-chhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGA-NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~-~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
+.++++..+++.|++.+++++|++.|++ +..|.. .+++...|.+++.++.+|+|||++|+|+||++| .|+|+||
T Consensus 356 ~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~-~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la----~p~r~Vv 430 (575)
T TIGR02720 356 EGPLQAYQVYRAINKIAEDDAIYSIDVGDININSN-RHLKMTPKNKWITSNLFATMGVGVPGAIAAKLN----YPDRQVF 430 (575)
T ss_pred CCCcCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHH-HhCCcCCCCeEEcCCCcchhhchHHHHHHHHHh----CCCCcEE
Confidence 4579999999999999999999999944 454444 457888899999999999999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||+|++|||+|++||++|+++||+||
T Consensus 431 ~i~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN 462 (575)
T TIGR02720 431 NLAGDGAFSMTMQDLLTQVQYHLPVINIVFSN 462 (575)
T ss_pred EEEcccHHHhhHHHHHHHHHhCCCeEEEEEeC
Confidence 99999999999999999999999999999999
No 29
>PRK05858 hypothetical protein; Provisional
Probab=99.94 E-value=2.3e-26 Score=207.71 Aligned_cols=108 Identities=37% Similarity=0.614 Sum_probs=97.7
Q ss_pred CCCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
...++++.++++.|++.+|++.+++.|+++...+...++....|++|+.++++|+|||++|+||||++| .|+|+||
T Consensus 354 ~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la----~p~r~vv 429 (542)
T PRK05858 354 DRDPIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLA----RPSRQVV 429 (542)
T ss_pred CCCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHh----CCCCcEE
Confidence 345799999999999999999999999554443444557888899999998899999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||||++|||+|++||++|+++||+||
T Consensus 430 ~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN 461 (542)
T PRK05858 430 LLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNN 461 (542)
T ss_pred EEEcCchhcCcHHHHHHHHHcCCCEEEEEEeC
Confidence 99999999999999999999999999999999
No 30
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.94 E-value=2.3e-26 Score=207.36 Aligned_cols=106 Identities=32% Similarity=0.469 Sum_probs=96.6
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccC-cchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEG-ANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg-~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
+.++++.++++.|++.++++++++.|+ .+..|.. +++....|.+++.+.++|+|||++|+|+||++| .|+|+||
T Consensus 356 ~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~~~~~vv 430 (539)
T TIGR02418 356 QAHLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMA-RYFRSYRARHLLISNGMQTLGVALPWAIGAALV----RPNTKVV 430 (539)
T ss_pred CCCcCHHHHHHHHHhhCCCCCEEEECCcHHHHHHH-HhcccCCCCceecCCCccccccHHHHHHHHHHh----CCCCcEE
Confidence 347999999999999999999999995 4555554 457788899999999999999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||||++|||+|++||++|+++||+||
T Consensus 431 ~i~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN 462 (539)
T TIGR02418 431 SVSGDGGFLFSSMELETAVRLKLNIVHIIWND 462 (539)
T ss_pred EEEcchhhhchHHHHHHHHHhCCCeEEEEEEC
Confidence 99999999999999999999999999999999
No 31
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.94 E-value=1.9e-26 Score=210.24 Aligned_cols=107 Identities=24% Similarity=0.341 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.+++++|++.++++++++.|+++...+..+++....|++|++++++|+|||++|+||||++| .|+|+||+
T Consensus 367 ~~~l~~~~~~~~l~~~l~~d~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la----~p~r~Vv~ 442 (591)
T PRK11269 367 NVPIKPQRVYEEMNKAFGRDTCYVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAA----DPDRNVVA 442 (591)
T ss_pred CCCcCHHHHHHHHHHhcCCCcEEEECCcHHHHHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhh----CCCCcEEE
Confidence 45799999999999999999999999555444445567888899999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 443 i~GDG~f~m~~~eL~Ta~~~~lpv~~vV~NN 473 (591)
T PRK11269 443 LSGDYDFQFLIEELAVGAQFNLPYIHVLVNN 473 (591)
T ss_pred EEccchhhcCHHHHHHHHHhCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 32
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.94 E-value=2.4e-26 Score=208.00 Aligned_cols=106 Identities=53% Similarity=0.924 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHhhhhCCC--CceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 67 SVPLNYYAAIHAVQVSIPD--NCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~--~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
+.++++.++++.|++.+++ +.+++.||++..++..++++...|++++.+++||+|||++|+||||++| ++|+|
T Consensus 363 ~~~l~~~~~~~~l~~~l~~~~~~ivv~d~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-----~~~~v 437 (554)
T TIGR03254 363 ESPMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-----TGKPV 437 (554)
T ss_pred CCCcCHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-----CCCcE
Confidence 4579999999999999974 6677778877777777778888999999999999999999999999998 58999
Q ss_pred EEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 145 VCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 145 v~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+++|||||||++|||+|++||++|+++||+||
T Consensus 438 v~i~GDGsf~m~~~EL~Ta~r~~l~v~~vV~NN 470 (554)
T TIGR03254 438 VALEGDSAFGFSGMEVETICRYNLPVCVVIFNN 470 (554)
T ss_pred EEEEcCchhcccHHHHHHHHHcCCCEEEEEEeC
Confidence 999999999999999999999999999999999
No 33
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.94 E-value=1.9e-26 Score=209.02 Aligned_cols=106 Identities=30% Similarity=0.431 Sum_probs=95.9
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
..++++.+++++|++.+| +++++.|+++...+..+++..+.|.+|+.+.++|+|||++|+|||+++| .|+|+||+
T Consensus 363 ~~~l~~~~~~~~l~~~~p-~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~Vv~ 437 (561)
T PRK06048 363 EDVIKPQYVIEQIYELCP-DAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVG----KPDKTVID 437 (561)
T ss_pred CCCcCHHHHHHHHHhhCC-CcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHh----CCCCcEEE
Confidence 457999999999999998 6899999555434444557888899999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 438 i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN 468 (561)
T PRK06048 438 IAGDGSFQMNSQELATAVQNDIPVIVAILNN 468 (561)
T ss_pred EEeCchhhccHHHHHHHHHcCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 34
>PLN02470 acetolactate synthase
Probab=99.94 E-value=2.6e-26 Score=209.04 Aligned_cols=106 Identities=29% Similarity=0.336 Sum_probs=97.1
Q ss_pred CCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy15960 68 VPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 147 (177)
Q Consensus 68 ~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i 147 (177)
.++++.++++.|++.+++++|++.|+++...+..+++....|.+|+.++++|+|||++|+||||++| .|+|+||++
T Consensus 375 ~~l~~~~~~~~l~~~~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la----~p~~~Vv~i 450 (585)
T PLN02470 375 DAIPPQYAIQVLDELTDGNAIISTGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAA----NPDAIVVDI 450 (585)
T ss_pred CCcCHHHHHHHHHhhCCCCEEEEECCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHh----CCCCcEEEE
Confidence 5799999999999999999999999555444444557888999999999999999999999999999 799999999
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|||||+|++|||+|++||++|+++||+||
T Consensus 451 ~GDG~f~m~~~eL~Ta~~~~l~v~ivV~NN 480 (585)
T PLN02470 451 DGDGSFIMNIQELATIHVENLPVKIMVLNN 480 (585)
T ss_pred EccchhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 999999999999999999999999999999
No 35
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.93 E-value=2.9e-26 Score=207.28 Aligned_cols=107 Identities=23% Similarity=0.315 Sum_probs=96.7
Q ss_pred CCCCCCHHHHHHHhhhhCCCCceEEccC-cchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCC-CCe
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDNCIIVGEG-ANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP-GKR 143 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~~iiv~dg-~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p-~r~ 143 (177)
.+.++++.+++++|++.+|+++++++|+ .+..|. .+++....|.+++.+.++|+|||++|+|+||++| +| +|+
T Consensus 343 ~~~~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~~ 417 (549)
T PRK06457 343 LDKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWT-ARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFA----VENKRQ 417 (549)
T ss_pred CCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHH-HHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhc----CCCCCe
Confidence 3468999999999999999999999995 445444 4457777889999999999999999999999999 68 899
Q ss_pred EEEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 144 VVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 144 vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
||+++|||||+|++|||+|+++|++|+++||+||
T Consensus 418 Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN 451 (549)
T PRK06457 418 VISFVGDGGFTMTMMELITAKKYDLPVKIIIYNN 451 (549)
T ss_pred EEEEEcccHHhhhHHHHHHHHHHCCCeEEEEEEC
Confidence 9999999999999999999999999999999999
No 36
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.93 E-value=3.2e-26 Score=207.70 Aligned_cols=107 Identities=30% Similarity=0.416 Sum_probs=96.6
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.++++.|++.++++++|+.|+++...+...++....|.+++.+.++|+|||++|+|||+++| .|+++||+
T Consensus 369 ~~~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la----~p~~~vv~ 444 (572)
T PRK06456 369 NGKLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLA----RPDKVVVD 444 (572)
T ss_pred CCCcCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHh----CCCCeEEE
Confidence 34799999999999999999999999554433444456778899999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 445 i~GDG~f~m~~~eL~Ta~~~~l~i~ivV~NN 475 (572)
T PRK06456 445 LDGDGSFLMTGTNLATAVDEHIPVISVIFDN 475 (572)
T ss_pred EEccchHhcchHHHHHHHHhCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 37
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.93 E-value=3.9e-26 Score=207.50 Aligned_cols=107 Identities=27% Similarity=0.398 Sum_probs=98.1
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.++++.|++.+++++||+.|+++...+...++..+.|.+|+.+++||+|||++|+|+||++| .|+|+||+
T Consensus 370 ~~~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA----~p~~~vv~ 445 (570)
T PRK06725 370 ESELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLA----KEEELVIC 445 (570)
T ss_pred CCCcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhh----cCCCeEEE
Confidence 45799999999999999999999999665544445567888999999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+||+||++|+++||+||
T Consensus 446 i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN 476 (570)
T PRK06725 446 IAGDASFQMNIQELQTIAENNIPVKVFIINN 476 (570)
T ss_pred EEecchhhccHHHHHHHHHhCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 38
>KOG1184|consensus
Probab=99.93 E-value=2.1e-26 Score=202.41 Aligned_cols=148 Identities=20% Similarity=0.272 Sum_probs=121.6
Q ss_pred cceeCCcchHHHHHh-cc-ccccccccCCCCcccchhhhhhccCCCCCCCHHHHHHHhhhhCCCCceEEccC-cchhHHH
Q psy15960 24 VGARRRIRMRDLIQR-AK-VEEGEMKVGGNMRGVDSAVEKMIQDESVPLNYYAAIHAVQVSIPDNCIIVGEG-ANTMDIG 100 (177)
Q Consensus 24 ~~~~~~v~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iiv~dg-~~~~~~~ 100 (177)
..+|.+|.|+++|++ ++ ++.+..++..+.+...+...........++++..+|+.++.++.+++++++|+ .+.+.+.
T Consensus 319 ~~~f~~v~mk~~l~~Lak~I~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~~~ 398 (561)
T KOG1184|consen 319 NATFGGVLMKDFLQELAKRIKKNKTSYENYVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDVVIAETGDSWFGIN 398 (561)
T ss_pred cccccceeHHHHHHHHHHhhcccccchhcccccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCceEEEecccceecce
Confidence 478999999999999 77 77776655433322222223344455677999999999999999999999994 4443332
Q ss_pred HHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 101 RSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 101 ~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+ ..++....++++..|||+||++|+++|+++| .|+||||+|+||||||+|+||++|++|.++|++|||+||
T Consensus 399 -~-~~fP~g~~~~~q~~wgsIG~svga~lG~a~a----~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~if~~NN 469 (561)
T KOG1184|consen 399 -Q-TKFPKGCGYESQMQWGSIGWSVGATLGYAQA----APEKRVILFIGDGSFQLTVQEISTMIRWGLKPIIFLINN 469 (561)
T ss_pred -e-eccccccceEEEEEEeeccccchhhhhhhhc----cCCceEEEEecCccceeeHHHHHHHHhcCCCcEEEEEeC
Confidence 2 5566777899999999999999999999999 688999999999999999999999999999999999998
No 39
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.93 E-value=6.4e-26 Score=206.60 Aligned_cols=106 Identities=29% Similarity=0.424 Sum_probs=97.3
Q ss_pred CCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy15960 68 VPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 147 (177)
Q Consensus 68 ~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i 147 (177)
.++++.+++.+|++.+|+|+|++.|+++...+..++++...|++++.+.++|+|||++|+|+|+++| .|+|+||++
T Consensus 384 ~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la----~p~r~vv~i 459 (588)
T PRK07525 384 DYMHPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIA----CPDRPVVGF 459 (588)
T ss_pred CCcCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHh----CCCCcEEEE
Confidence 5799999999999999999999999554434445567888999999999999999999999999999 799999999
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|||||+|++|||+|++||++|+++||+||
T Consensus 460 ~GDG~f~~~~~el~Ta~~~~lpv~ivV~NN 489 (588)
T PRK07525 460 AGDGAWGISMNEVMTAVRHNWPVTAVVFRN 489 (588)
T ss_pred EcCchHhccHHHHHHHHHhCCCeEEEEEeC
Confidence 999999999999999999999999999999
No 40
>PRK08611 pyruvate oxidase; Provisional
Probab=99.93 E-value=6.5e-26 Score=206.21 Aligned_cols=107 Identities=26% Similarity=0.397 Sum_probs=97.0
Q ss_pred CCCCCCHHHHHHHhhhhCCCCceEEccCc-chhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDNCIIVGEGA-NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~~iiv~dg~-~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
.+.++++.+++++|++.+|+++++++|++ +..|.. +++....|.+|+.+.++|+|||++|+|||+++| .|+|+|
T Consensus 355 ~~~~i~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~V 429 (576)
T PRK08611 355 ASTPIKPERVMAAIQKIADDDAVLSVDVGTVTVWSA-RYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIA----FPDRQA 429 (576)
T ss_pred CCCCcCHHHHHHHHhhhcCCCeEEEEcChHHHHHHH-hcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHh----CCCCcE
Confidence 34579999999999999999999999955 444444 457888889999888899999999999999999 799999
Q ss_pred EEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 145 VCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 145 v~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+++|||||+|++|||+|++||++|+++||+||
T Consensus 430 v~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN 462 (576)
T PRK08611 430 IAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNN 462 (576)
T ss_pred EEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeC
Confidence 999999999999999999999999999999999
No 41
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.93 E-value=5.1e-26 Score=208.14 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=98.4
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.+++++|++.++++++++.|+++...+..+++.+..|.+|+.++++|+|||++|+||||++| +|+|+|++
T Consensus 395 ~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la----~p~~~Vv~ 470 (612)
T PRK07789 395 DGSLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVG----RPDKEVWA 470 (612)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhcc----CCCCcEEE
Confidence 45799999999999999999999999655544555668888899999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 471 i~GDG~f~m~~~eL~Ta~~~~lpv~ivV~NN 501 (612)
T PRK07789 471 IDGDGCFQMTNQELATCAIEGIPIKVALINN 501 (612)
T ss_pred EEcchhhhccHHHHHHHHHcCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 42
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.93 E-value=7.9e-26 Score=205.01 Aligned_cols=107 Identities=34% Similarity=0.393 Sum_probs=97.0
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
..+|+|.+++++|++.+++++|++.|+++...+..+++....|++|+.++++|+|||++|+|+||++| .|+|+||+
T Consensus 362 ~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la----~p~~~vv~ 437 (563)
T PRK08527 362 DEVLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLA----VPDKVVIN 437 (563)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh----CCCCcEEE
Confidence 35799999999999999999999999654433444457888899999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 438 i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN 468 (563)
T PRK08527 438 FTGDGSILMNIQELMTAVEYKIPVINIILNN 468 (563)
T ss_pred EecCchhcccHHHHHHHHHhCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 43
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.93 E-value=8.4e-26 Score=204.10 Aligned_cols=107 Identities=26% Similarity=0.392 Sum_probs=97.2
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
..++++..++++|++.++++++++.|+++...+..+++....|++|+.++++|+|||++|+|||+++| .|+|+||+
T Consensus 349 ~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la----~p~~~vv~ 424 (548)
T PRK08978 349 GEAIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVA----RPDDTVIC 424 (548)
T ss_pred CCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHh----CCCCcEEE
Confidence 35799999999999999999999999554433444557888999999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++|+++|+++||+||
T Consensus 425 i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN 455 (548)
T PRK08978 425 VSGDGSFMMNVQELGTIKRKQLPVKIVLLDN 455 (548)
T ss_pred EEccchhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 44
>PRK08617 acetolactate synthase; Reviewed
Probab=99.93 E-value=1.1e-25 Score=203.39 Aligned_cols=107 Identities=36% Similarity=0.535 Sum_probs=96.7
Q ss_pred CCCCCCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
...++++.++++.|++.++++++++.| |.+..|.. +++....|.+++.+.++|+|||++|+|||+++| .|+|+|
T Consensus 361 ~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~-~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la----~p~~~v 435 (552)
T PRK08617 361 EEGAVHPLRIIRALQDIVTDDTTVTVDVGSHYIWMA-RYFRSYEPRHLLFSNGMQTLGVALPWAIAAALV----RPGKKV 435 (552)
T ss_pred CCCCcCHHHHHHHHHHhcCCCcEEEeCCcHHHHHHH-HhccccCCCeEEecCccccccccccHHHhhHhh----cCCCcE
Confidence 345799999999999999999999999 55555554 446778889998888899999999999999999 799999
Q ss_pred EEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 145 VCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 145 v~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+++|||||+|++|||+|++||++|+++||+||
T Consensus 436 v~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN 468 (552)
T PRK08617 436 VSVSGDGGFLFSAMELETAVRLKLNIVHIIWND 468 (552)
T ss_pred EEEEechHHhhhHHHHHHHHHhCCCeEEEEEEC
Confidence 999999999999999999999999999999999
No 45
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.93 E-value=1.6e-25 Score=203.38 Aligned_cols=107 Identities=28% Similarity=0.377 Sum_probs=97.4
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
..++++..+++.|++.++++++++.|+++...+..+++..+.|++|+.++++|+|||++|+||||++| .|+++||+
T Consensus 372 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala----~p~~~vv~ 447 (571)
T PRK07710 372 SESIKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLA----KPDETVVA 447 (571)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh----CCCCcEEE
Confidence 45799999999999999999999999555434444557888999999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 448 i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN 478 (571)
T PRK07710 448 IVGDGGFQMTLQELSVIKELSLPVKVVILNN 478 (571)
T ss_pred EEcchHHhhhHHHHHHHHHhCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 46
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.93 E-value=1.5e-25 Score=203.46 Aligned_cols=106 Identities=52% Similarity=0.934 Sum_probs=96.4
Q ss_pred CCCCCHHHHHHHhhhhCC--CCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 67 SVPLNYYAAIHAVQVSIP--DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~--~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
+.++++..++++|++.++ +|.+++.||++..++..+++....|++++.++++|+|||++|+||||++| ++|+|
T Consensus 370 ~~~l~~~~~~~~l~~~l~~~~d~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-----~~~~v 444 (569)
T PRK09259 370 TQPMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-----TGKPV 444 (569)
T ss_pred CCCcCHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-----CCCcE
Confidence 457999999999999995 47788888777767777767888999999999999999999999999998 58999
Q ss_pred EEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 145 VCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 145 v~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+++|||||+|++|||+|++||++|+++||+||
T Consensus 445 v~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~NN 477 (569)
T PRK09259 445 VAIEGDSAFGFSGMEVETICRYNLPVTVVIFNN 477 (569)
T ss_pred EEEecCccccccHHHHHHHHHcCCCEEEEEEeC
Confidence 999999999999999999999999999999999
No 47
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.93 E-value=2.1e-25 Score=204.27 Aligned_cols=104 Identities=29% Similarity=0.444 Sum_probs=93.5
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
+.+|+|.+++++|++.++ +++++.| |.+..|+.++ +. ..|.++++++++|+|||++|+||||++| .|+|+||
T Consensus 384 ~~~l~~~~v~~~l~~~~~-d~i~~~D~G~~~~~~~~~-~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA----~p~r~Vv 456 (616)
T PRK07418 384 EGEIYPQEVLLAVRDLAP-DAYYTTDVGQHQMWAAQF-LR-NGPRRWISSAGLGTMGFGMPAAMGVKVA----LPDEEVI 456 (616)
T ss_pred CCCcCHHHHHHHHHhhCC-CcEEEECChHHHHHHHHh-hh-cCCCeEEcCCCccccccHHHHHHHHHHh----CCCCcEE
Confidence 467999999999999998 5899999 5555555543 55 5688899999999999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||+|++|||+|++||++|+++||+||
T Consensus 457 ~i~GDG~f~m~~~eL~Ta~r~~lpvi~vV~NN 488 (616)
T PRK07418 457 CIAGDASFLMNIQELGTLAQYGINVKTVIINN 488 (616)
T ss_pred EEEcchHhhhhHHHHHHHHHhCCCeEEEEEEC
Confidence 99999999999999999999999999999999
No 48
>PRK08322 acetolactate synthase; Reviewed
Probab=99.93 E-value=2.5e-25 Score=200.77 Aligned_cols=106 Identities=32% Similarity=0.495 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
..++++.++++.|++.++++++++.| |.+..|+.+ ++....|.+++.+.++|+|||++|+|+|+++| .|+|+||
T Consensus 354 ~~~l~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~p~~~vv 428 (547)
T PRK08322 354 RFPMKPQRIVADLRKVMPDDDIVILDNGAYKIWFAR-NYRAYEPNTCLLDNALATMGAGLPSAIAAKLV----HPDRKVL 428 (547)
T ss_pred CCCcCHHHHHHHHHHHCCCCeEEEECCcHHHHHHHH-hcccCCCCCEEcCCCcccccchhHHHHHHHHh----CCCCcEE
Confidence 34699999999999999999999999 555555554 47778899999999999999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||+|++|||+|++||++|+++||+||
T Consensus 429 ~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN 460 (547)
T PRK08322 429 AVCGDGGFMMNSQELETAVRLGLPLVVLILND 460 (547)
T ss_pred EEEcchhHhccHHHHHHHHHhCCCeEEEEEeC
Confidence 99999999999999999999999999999999
No 49
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.92 E-value=2.4e-25 Score=201.82 Aligned_cols=107 Identities=33% Similarity=0.499 Sum_probs=97.1
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.++++.|++.+|++++|+.|+|+...+..+++.++.|.+|+.++++|+|||++|+|+|+++| .|+|+||+
T Consensus 367 ~~~l~~~~v~~~l~~~l~~~~iv~~D~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~~~~~vv~ 442 (564)
T PRK08155 367 DDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALA----NPERKVLC 442 (564)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEECCchHHHHHHHhccccCCCeEEeCCCcccccchhHHHHHHHHh----CCCCcEEE
Confidence 45799999999999999999999999554433444558888899999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 443 i~GDGsf~~~~~eL~ta~~~~lpvi~vV~NN 473 (564)
T PRK08155 443 FSGDGSLMMNIQEMATAAENQLDVKIILMNN 473 (564)
T ss_pred EEccchhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 50
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.92 E-value=1.9e-25 Score=203.45 Aligned_cols=107 Identities=26% Similarity=0.467 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHhhhhCCC-----CceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCC
Q psy15960 67 SVPLNYYAAIHAVQVSIPD-----NCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPG 141 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~-----~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~ 141 (177)
+.++++..++++|++.+++ +++|+.|+|+...+..+++..+.|.+|++++++|+|||++|+|+|+++| .|+
T Consensus 362 ~~~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la----~p~ 437 (586)
T PRK06276 362 DKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVA----KPD 437 (586)
T ss_pred CCCcCHHHHHHHHHHhccccCCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhh----cCC
Confidence 4579999999999999998 9999999554433334457888999999999999999999999999999 799
Q ss_pred CeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 142 KRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 142 r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++||+++|||||+|++|||+|++||++|+++||+||
T Consensus 438 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN 473 (586)
T PRK06276 438 ANVIAITGDGGFLMNSQELATIAEYDIPVVICIFDN 473 (586)
T ss_pred CcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 999999999999999999999999999999999999
No 51
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.92 E-value=1.3e-25 Score=203.19 Aligned_cols=107 Identities=28% Similarity=0.455 Sum_probs=97.9
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.+++++|++.+|++++++.|+++...+..+++..+.|.+|++++++|+|||++|+|+|+++| .|+|+||+
T Consensus 360 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la----~~~~~vv~ 435 (558)
T TIGR00118 360 EEGIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVA----KPESTVIC 435 (558)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhh----CCCCcEEE
Confidence 45799999999999999999999999555444445568888999999999999999999999999999 78999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++|+++|+++||+||
T Consensus 436 ~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN 466 (558)
T TIGR00118 436 ITGDGSFQMNLQELSTAVQYDIPVKILILNN 466 (558)
T ss_pred EEcchHHhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 52
>KOG1185|consensus
Probab=99.92 E-value=2.1e-25 Score=195.10 Aligned_cols=109 Identities=68% Similarity=1.109 Sum_probs=103.9
Q ss_pred CCCCCCCHHHHHHHhhhhCC-CCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCe
Q psy15960 65 DESVPLNYYAAIHAVQVSIP-DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 143 (177)
Q Consensus 65 ~~~~~l~~~~~~~~l~~~l~-~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~ 143 (177)
....|+++..+++.|++.|| +|.|+|+||+++++.+++.+..+.|++.+-.+.||+||.|+++|+||+++ +|+++
T Consensus 375 ~~~~pLN~~~~~~~vre~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~----~P~~~ 450 (571)
T KOG1185|consen 375 KKSTPLNYYQVLQTVRELLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALA----APDRK 450 (571)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhh----CCCCe
Confidence 34567999999999999999 88899999999999999999999999999999999999999999999999 79999
Q ss_pred EEEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 144 VVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 144 vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+|+.||++|.|+..|+.|++||+||++++|+||
T Consensus 451 V~~veGDsaFGfSaME~ET~vR~~Lpvv~vV~NN 484 (571)
T KOG1185|consen 451 VVCVEGDSAFGFSAMELETFVRYKLPVVIVVGNN 484 (571)
T ss_pred EEEEecCcccCcchhhHHHHHHhcCCeEEEEecC
Confidence 9999999999999999999999999999999987
No 53
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.92 E-value=2.8e-25 Score=202.40 Aligned_cols=105 Identities=29% Similarity=0.499 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.+|++.+++++|++.++ +++++.|+++...+..+++.. .|++|+.+.++|+|||++|+||||++| .|+|+||+
T Consensus 380 ~~~l~~~~~~~~l~~~~~-d~iv~~d~G~~~~~~~~~~~~-~~~~~~~~~~~g~mG~glpaaiGaala----~p~~~vv~ 453 (585)
T CHL00099 380 STSLSPQEVINEISQLAP-DAYFTTDVGQHQMWAAQFLKC-KPRKWLSSAGLGTMGYGLPAAIGAQIA----HPNELVIC 453 (585)
T ss_pred CCCcCHHHHHHHHHhhCC-CeEEEECCcHHHHHHHHhccC-CCCcEEcCccccchhhhHHHHHHHHHh----CCCCeEEE
Confidence 457999999999999999 899999966543444444654 578899999999999999999999999 69999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 454 i~GDG~f~m~~~eL~Ta~~~~l~~~~vV~NN 484 (585)
T CHL00099 454 ISGDASFQMNLQELGTIAQYNLPIKIIIINN 484 (585)
T ss_pred EEcchhhhhhHHHHHHHHHhCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 54
>PRK06163 hypothetical protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=177.31 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=85.5
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcc---hhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCe
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGAN---TMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 143 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~---~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~ 143 (177)
..+++..+++++|++.+++++++++|+|+ ..|..+ ..|.+++ .+|+|||++|+|+|+++| .|+++
T Consensus 10 ~~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~-----~~~~~~~---~~GsMG~glpaAiGaalA----~p~r~ 77 (202)
T PRK06163 10 AKVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG-----QRPQNFY---MLGSMGLAFPIALGVALA----QPKRR 77 (202)
T ss_pred CCCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh-----cCCCCeE---eecccccHHHHHHHHHHh----CCCCe
Confidence 45689999999999999999999999553 233221 3566666 489999999999999999 79999
Q ss_pred EEEEEcchhhcccHHHHHHHHHc-CCCcEEEEEeC
Q psy15960 144 VVCVQGDSAFGFSGMELETLVRY-RLPVILVILYN 177 (177)
Q Consensus 144 vv~i~GDGsf~m~~qEL~Ta~r~-~lpviiiVlNN 177 (177)
||+++|||||+|++|||+|++++ ++|+++||+||
T Consensus 78 Vv~i~GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN 112 (202)
T PRK06163 78 VIALEGDGSLLMQLGALGTIAALAPKNLTIIVMDN 112 (202)
T ss_pred EEEEEcchHHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 99999999999999999999987 68999999999
No 55
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.92 E-value=3.9e-25 Score=201.21 Aligned_cols=106 Identities=23% Similarity=0.316 Sum_probs=95.9
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCc-chhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGA-NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~-~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
..+|++.++++.|++.+++++|+++|+| +..|.. +++....+.+++.+..+|+|||++|+|+|+++| .|+++||
T Consensus 356 ~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la----~p~~~vv 430 (578)
T PRK06546 356 HTPIHPEYVASILDELAADDAVFTVDTGMCNVWAA-RYITPNGRRRVIGSFRHGSMANALPHAIGAQLA----DPGRQVI 430 (578)
T ss_pred CCCcCHHHHHHHHHHhccCCcEEEECCcHHHHHHH-HhcCCCCCceEEccCCcccccchhHHHHHHHHh----CCCCcEE
Confidence 3579999999999999999999999955 444444 456777788999899999999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||+|++|||+|++||++|+++||+||
T Consensus 431 ~i~GDGsf~~~~~el~Ta~~~~lpv~~vV~NN 462 (578)
T PRK06546 431 SMSGDGGLSMLLGELLTVKLYDLPVKVVVFNN 462 (578)
T ss_pred EEEcCchHhhhHHHHHHHHHhCCCeEEEEEEC
Confidence 99999999999999999999999999999999
No 56
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.92 E-value=5.7e-25 Score=199.67 Aligned_cols=107 Identities=26% Similarity=0.391 Sum_probs=97.2
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
..++++..+++.|++.++++++++.|+++...++.+++....|.+|+.++++|+|||++|+|+|+++| .|+++||+
T Consensus 369 ~~~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la----~p~~~vv~ 444 (574)
T PRK06882 369 SDVIKPQQVVEAIYRLTNGDAYVASDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFA----HPEATVVC 444 (574)
T ss_pred CCCcCHHHHHHHHHhhcCCCeEEEecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhh----cCCCcEEE
Confidence 34699999999999999999999999555444445568888999999999999999999999999999 68999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 445 i~GDG~f~~~~~eL~ta~~~~lpv~~vV~NN 475 (574)
T PRK06882 445 VTGDGSIQMNIQELSTAKQYDIPVVIVSLNN 475 (574)
T ss_pred EEcchhhhccHHHHHHHHHhCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 57
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.91 E-value=2.2e-24 Score=194.74 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=88.1
Q ss_pred CCCCCCHHHHHHHhhhhCCCC--ceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCe
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 143 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~--~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~ 143 (177)
++.+++|.+++++|++.++++ +++++|+|+..++..+ + .+.+++.++.||+|||++|+|+||++| .| +|
T Consensus 352 ~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~-~---~~~~~~~~~~~g~mG~glpaaiGa~lA----~~-~r 422 (535)
T TIGR03394 352 DAEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMD-M---DDAGLMAPGYYAGMGFGVPAGIGAQCT----SG-KR 422 (535)
T ss_pred CCCCcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHh-c---CCCcEECcCccchhhhHHHHHHHHHhC----CC-CC
Confidence 345799999999999999876 4688995555444433 2 367899999999999999999999998 44 56
Q ss_pred EEEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 144 VVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 144 vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|+++|||||||++|||+|++||++|+++||+||
T Consensus 423 ~v~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN 456 (535)
T TIGR03394 423 ILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNN 456 (535)
T ss_pred eEEEEeChHHHhHHHHHHHHHHcCCCcEEEEEEC
Confidence 7889999999999999999999999999999999
No 58
>PRK07524 hypothetical protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=194.97 Aligned_cols=105 Identities=30% Similarity=0.549 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceec-CCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 68 VPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLD-AGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 68 ~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~-~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
.++++.++++.|++.++ ++++++|+++..+++.+++..+.|.+|+. +.++|+|||++|+|+|+++| +|+++||+
T Consensus 356 ~~~~~~~~~~~l~~~l~-~~~i~~d~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA----~p~~~vv~ 430 (535)
T PRK07524 356 LTAAQVALLDTILAALP-DAIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALG----APERPVVC 430 (535)
T ss_pred cccCHHHHHHHHHHhCC-CCEEEeCCcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHh----CCCCcEEE
Confidence 34678899999999998 68888896655555555678888999998 88999999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|++|||+|++||++|+++||+||
T Consensus 431 i~GDG~f~~~~~el~ta~~~~lpi~~vV~NN 461 (535)
T PRK07524 431 LVGDGGLQFTLPELASAVEADLPLIVLLWNN 461 (535)
T ss_pred EEcchHHhhhHHHHHHHHHhCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 59
>PRK07064 hypothetical protein; Provisional
Probab=99.91 E-value=1.3e-24 Score=195.91 Aligned_cols=103 Identities=26% Similarity=0.349 Sum_probs=90.1
Q ss_pred CCCH-HHHHHHhhhhCCCCceEEcc-Ccc-hhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 69 PLNY-YAAIHAVQVSIPDNCIIVGE-GAN-TMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 69 ~l~~-~~~~~~l~~~l~~~~iiv~d-g~~-~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
++.+ ..+++.|++.+|++++++.| |.+ ..|. ..++++..|.+++.+.+ |+|||++|+||||++| +|+|+||
T Consensus 354 ~~~~~~~~~~~l~~~l~~~~ii~~d~~~~~~~~~-~~~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA----~p~~~vv 427 (544)
T PRK07064 354 GLGPYAKLVDALRAALPRDGNWVRDVTISNSTWG-NRLLPIFEPRANVHALG-GGIGQGLAMAIGAALA----GPGRKTV 427 (544)
T ss_pred ccCcHHHHHHHHHHhCCCCCEEEeCCccchHHHH-HHhcCccCCCceeccCC-Cccccccchhhhhhhh----CcCCcEE
Confidence 4554 46999999999999999999 434 4444 44577888888887655 9999999999999999 7999999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||+|++|||+|++||++|+++||+||
T Consensus 428 ~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN 459 (544)
T PRK07064 428 GLVGDGGLMLNLGELATAVQENANMVIVLMND 459 (544)
T ss_pred EEEcchHhhhhHHHHHHHHHhCCCeEEEEEeC
Confidence 99999999999999999999999999999999
No 60
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.91 E-value=2.9e-24 Score=195.25 Aligned_cols=106 Identities=25% Similarity=0.456 Sum_probs=94.0
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCc-chhHHHHHhhhccCCC-ceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGA-NTMDIGRSLLLNNLPR-HRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~-~~~~~~~~~~~~~~p~-~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
+.+|++.++++.|++.++++++++.|++ +..++. +++....|. +|+++.++|+||+++|+|+|+++| .|+|+|
T Consensus 384 ~~~i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~-~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la----~~~~~v 458 (578)
T PRK06112 384 ASPIRPERIMAELQAVLTGDTIVVADASYSSIWVA-NFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVA----RPGAPV 458 (578)
T ss_pred CCCcCHHHHHHHHHHhCCCCCEEEEcccHHHHHHH-HhcCccCCCceEECCCCccccccHHHHHHHHHhh----CCCCcE
Confidence 4579999999999999999999999955 445444 445555555 688889999999999999999999 799999
Q ss_pred EEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 145 VCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 145 v~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+++|||||+|++|||+|++||++|+++||+||
T Consensus 459 v~i~GDGsf~~~~~el~ta~~~~l~~~~vv~NN 491 (578)
T PRK06112 459 ICLVGDGGFAHVWAELETARRMGVPVTIVVLNN 491 (578)
T ss_pred EEEEcchHHHhHHHHHHHHHHhCCCeEEEEEeC
Confidence 999999999999999999999999999999999
No 61
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.91 E-value=3.1e-24 Score=165.95 Aligned_cols=93 Identities=27% Similarity=0.341 Sum_probs=80.1
Q ss_pred HHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcch
Q psy15960 73 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 151 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG 151 (177)
+.++++|.+.+ ++++|++| |.+..++ ++....|++|+. +|+||+++|+|+|+++| .| ++||+++|||
T Consensus 2 ~~~~~~l~~~l-~d~~vv~d~G~~~~~~---~~~~~~~~~~~~---~gsmG~~lp~AiGa~~a----~~-~~Vv~i~GDG 69 (157)
T cd02001 2 IAAIAEIIEAS-GDTPIVSTTGYASREL---YDVQDRDGHFYM---LGSMGLAGSIGLGLALG----LS-RKVIVVDGDG 69 (157)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCHhHHHH---HHhhcCCCCEEe---ecchhhHHHHHHHHHhc----CC-CcEEEEECch
Confidence 46889999999 79999999 5444433 234467888884 89999999999999998 45 8999999999
Q ss_pred hhcccHHHHHHHHHc-CCCcEEEEEeC
Q psy15960 152 AFGFSGMELETLVRY-RLPVILVILYN 177 (177)
Q Consensus 152 sf~m~~qEL~Ta~r~-~lpviiiVlNN 177 (177)
||+|++|||+|++++ ++|+++||+||
T Consensus 70 ~f~m~~~el~t~~~~~~~~i~~vV~nN 96 (157)
T cd02001 70 SLLMNPGVLLTAGEFTPLNLILVVLDN 96 (157)
T ss_pred HHHhcccHHHHHHHhcCCCEEEEEEeC
Confidence 999999999999999 59999999999
No 62
>PRK08266 hypothetical protein; Provisional
Probab=99.91 E-value=6e-24 Score=191.73 Aligned_cols=105 Identities=29% Similarity=0.393 Sum_probs=94.2
Q ss_pred CCCHH-HHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy15960 69 PLNYY-AAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 147 (177)
Q Consensus 69 ~l~~~-~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i 147 (177)
.+++. .++++|++.+|++++++.|+++...+..++++...|++++.++.+|+|||++|+|+|+++| .|+++||++
T Consensus 351 ~~~~~~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la----~p~~~vv~v 426 (542)
T PRK08266 351 AVQPQASYLRAIREALPDDGIFVDELSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVA----NPDRPVVSI 426 (542)
T ss_pred cCCHHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHh----CCCCcEEEE
Confidence 36775 4899999999999999999665544555557778889999998999999999999999999 799999999
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|||||+|++|||+|++||++|+++||+||
T Consensus 427 ~GDG~f~~~~~eL~ta~~~~lpv~ivv~NN 456 (542)
T PRK08266 427 TGDGGFMFGVQELATAVQHNIGVVTVVFNN 456 (542)
T ss_pred EcchhhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 999999999999999999999999999999
No 63
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.90 E-value=2e-23 Score=189.10 Aligned_cols=106 Identities=30% Similarity=0.448 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.++++.|++.++++++++.|+++...+..+++....|..++.+ .+|+|||++|+|+|+++| .|+++||+
T Consensus 364 ~~~~~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~-~~g~mG~glpaaiGa~la----~p~~~vv~ 438 (557)
T PRK08199 364 PGAVQLGEVMAWLRERLPADAIITNGAGNYATWLHRFFRFRRYRTQLAP-TSGSMGYGLPAAIAAKLL----FPERTVVA 438 (557)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEECChHHHHHHHHhcCcCCCCeEECC-CCccccchHHHHHHHHHh----CCCCcEEE
Confidence 3479999999999999999999999955443344445777778777754 569999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+|||||+|++|||+|++++++|+++||+||
T Consensus 439 i~GDGsf~~~~~el~ta~~~~l~i~~vv~nN 469 (557)
T PRK08199 439 FAGDGCFLMNGQELATAVQYGLPIIVIVVNN 469 (557)
T ss_pred EEcchHhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9999999999999999999999999999999
No 64
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.90 E-value=9.3e-24 Score=191.43 Aligned_cols=106 Identities=14% Similarity=0.013 Sum_probs=93.1
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.+++++|++.+|++++|++|.++...+..+++....+.+++.+.++++|||++|+|+|+++| |+|+||+
T Consensus 373 ~~~i~~~~~~~~l~~~l~~~~iv~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-----~~~~vv~ 447 (568)
T PRK07449 373 EDTFTEAKVAAALADLLPEGGQLFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-----SAKPTVA 447 (568)
T ss_pred cCCccHHHHHHHHHHhCCCCCeEEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc-----CCCCEEE
Confidence 45799999999999999999999888444333333446667778888888899999999999999997 7899999
Q ss_pred EEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||||||++|||+|++||++|+++||+||
T Consensus 448 i~GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN 478 (568)
T PRK07449 448 LIGDLSFLHDLNGLLLLKQVPAPLTIVVVNN 478 (568)
T ss_pred EechHHhhcCcHHHHhhcccCCCeEEEEEEC
Confidence 9999999999999999999999999999999
No 65
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.90 E-value=1.6e-23 Score=166.42 Aligned_cols=95 Identities=29% Similarity=0.356 Sum_probs=80.7
Q ss_pred HHHHHHhhhhCCCCceEEccCcchhHHHHHhhhcc------CCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNN------LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~------~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++|++.+|+|+++++|.+... .+++... .|.+|+++ |+|||++|+|+|+++| .|+++||+
T Consensus 2 ~~~~~~l~~~l~~d~ivv~d~G~~~---~~~~~~~~~~~~~~~~~~~~~---g~mG~~lpaAiGaala----~p~~~Vv~ 71 (188)
T cd03371 2 EDAIEIVLSRAPATAAVVSTTGMTS---RELFELRDRPGGGHAQDFLTV---GSMGHASQIALGIALA----RPDRKVVC 71 (188)
T ss_pred HHHHHHHHhhcCCCCEEEECCCcch---HHHHHhhcCCCCCccCceeec---CccccHHHHHHHHHHh----CCCCcEEE
Confidence 4688999999999999999944332 2334444 34677743 9999999999999999 79999999
Q ss_pred EEcchhhcccHHHHHHHHHcCC-CcEEEEEeC
Q psy15960 147 VQGDSAFGFSGMELETLVRYRL-PVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qEL~Ta~r~~l-pviiiVlNN 177 (177)
++|||||+|++|||+|++++++ |+++||+||
T Consensus 72 i~GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN 103 (188)
T cd03371 72 IDGDGAALMHMGGLATIGGLAPANLIHIVLNN 103 (188)
T ss_pred EeCCcHHHhhccHHHHHHHcCCCCcEEEEEeC
Confidence 9999999999999999999997 699999999
No 66
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.89 E-value=3.4e-23 Score=159.39 Aligned_cols=99 Identities=39% Similarity=0.654 Sum_probs=86.7
Q ss_pred HHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhc
Q psy15960 75 AIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG 154 (177)
Q Consensus 75 ~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~ 154 (177)
+++.|.+.++++++++.|+++...+..+++....|.+++.+..+++||+++|+|+|+++| .|+++|++++|||||+
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a----~~~~~vv~~~GDG~~~ 77 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALA----APDRPVVCIAGDGGFM 77 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHh----CCCCcEEEEEcCcHHh
Confidence 678899999999999999544433333445666778888888999999999999999999 6899999999999999
Q ss_pred ccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 155 FSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 155 m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+++||+|++++++|+++||+||
T Consensus 78 ~~~~~l~ta~~~~~~~~~iv~nN 100 (168)
T cd00568 78 MTGQELATAVRYGLPVIVVVFNN 100 (168)
T ss_pred ccHHHHHHHHHcCCCcEEEEEEC
Confidence 99999999999999999999999
No 67
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.89 E-value=1e-23 Score=161.37 Aligned_cols=81 Identities=44% Similarity=0.660 Sum_probs=73.0
Q ss_pred c-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCc
Q psy15960 92 E-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPV 170 (177)
Q Consensus 92 d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpv 170 (177)
| |++.+|..+ +++...|.+++.+..+++||+++|+|+|+++| .|+|+||+++|||||+|++|||+|++|+++|+
T Consensus 1 D~G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v 75 (153)
T PF02775_consen 1 DIGCHTMWAAQ-YLRVRRPRRFLTSGGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMSLQELATAVRYGLPV 75 (153)
T ss_dssp -SSHHHHHHHH-HSCCSSTTEEEESTTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHHGGGHHHHHHTTSSE
T ss_pred CcChhHHHHHH-hcCcCCCCeEEcCCCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeeccchhHHHhhccceE
Confidence 5 556665554 47889999999999999999999999999999 79999999999999999999999999999999
Q ss_pred EEEEEeC
Q psy15960 171 ILVILYN 177 (177)
Q Consensus 171 iiiVlNN 177 (177)
++||+||
T Consensus 76 ~~vv~nN 82 (153)
T PF02775_consen 76 VIVVLNN 82 (153)
T ss_dssp EEEEEES
T ss_pred EEEEEeC
Confidence 9999999
No 68
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.89 E-value=3.7e-23 Score=163.46 Aligned_cols=93 Identities=25% Similarity=0.310 Sum_probs=79.4
Q ss_pred HHHHHHhhhhCCCCceEEccCcchhHHHHHhhhc-cCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcch
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLN-NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 151 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~-~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG 151 (177)
+.++++|++.+| ++++++|+|.... +++.. ..|.+++. +|+||+++|+|+|+++| . +++||+++|||
T Consensus 2 ~~~~~~l~~~l~-d~iiv~d~G~~~~---~~~~~~~~~~~~~~---~gsmG~~lpaAiGa~la----~-~~~Vv~i~GDG 69 (181)
T TIGR03846 2 IDAIRAIASYLE-DELVVSNIGVPSK---ELYAIRDRPLNFYM---LGSMGLASSIGLGLALA----T-DRTVIVIDGDG 69 (181)
T ss_pred HHHHHHHHHhCC-CCEEEecCCHhHH---HHHhhhcCCCCeee---ccccccHHHHHHHHHHc----C-CCcEEEEEcch
Confidence 468999999998 9999999543321 22343 46777774 89999999999999999 6 89999999999
Q ss_pred hhcccHHHHHHHHHcC-CCcEEEEEeC
Q psy15960 152 AFGFSGMELETLVRYR-LPVILVILYN 177 (177)
Q Consensus 152 sf~m~~qEL~Ta~r~~-lpviiiVlNN 177 (177)
||+|++|||+|+++++ +|+++||+||
T Consensus 70 ~f~m~~~el~ta~~~~~~pv~~vV~NN 96 (181)
T TIGR03846 70 SLLMNLGVLPTIAAESPKNLILVILDN 96 (181)
T ss_pred HHHhhhhHHHHHHHhCCCCeEEEEEeC
Confidence 9999999999999999 5999999999
No 69
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.89 E-value=4.9e-23 Score=185.52 Aligned_cols=107 Identities=28% Similarity=0.363 Sum_probs=94.7
Q ss_pred CCCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
++.++++.++++.|++.++++++++.|+++...+..++++...|.+|+.+ .+|+||+++|+|+|+++| .|+++||
T Consensus 355 ~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~-~~g~mG~~lp~aiGa~la----~p~~~vv 429 (530)
T PRK07092 355 PGEPLSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTM-ASGGLGYGLPAAVGVALA----QPGRRVI 429 (530)
T ss_pred CCCCcCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEcc-CCCcccchHHHHHHHHHh----CCCCeEE
Confidence 34579999999999999999999999955443444455777888888865 459999999999999999 6899999
Q ss_pred EEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||||+|++|||+|++++++|+++||+||
T Consensus 430 ~i~GDG~f~~~~~eL~ta~~~~lp~~~vv~NN 461 (530)
T PRK07092 430 GLIGDGSAMYSIQALWSAAQLKLPVTFVILNN 461 (530)
T ss_pred EEEeCchHhhhHHHHHHHHHhCCCcEEEEEeC
Confidence 99999999999999999999999999999999
No 70
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.89 E-value=4.5e-23 Score=187.38 Aligned_cols=103 Identities=28% Similarity=0.318 Sum_probs=93.3
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
+.++++.+++++|++.+++++++++|.+ |. .++++.+.|.+|++++++|+|||++|+|+|+++| .|+|+||+
T Consensus 382 ~~~i~~~~~~~~l~~~l~~~~~vv~~~~---~~-~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la----~p~~~vv~ 453 (569)
T PRK08327 382 RGPITPAYLSYCLGEVADEYDAIVTEYP---FV-PRQARLNKPGSYFGDGSAGGLGWALGAALGAKLA----TPDRLVIA 453 (569)
T ss_pred CCCcCHHHHHHHHHHhcCccceEEeccH---HH-HHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhc----CCCCeEEE
Confidence 4679999999999999999998886643 33 3457888899999999999999999999999999 79999999
Q ss_pred EEcchhhcccHHH--HHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAFGFSGME--LETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf~m~~qE--L~Ta~r~~lpviiiVlNN 177 (177)
++|||||+|+++| |+|++||++|+++||+||
T Consensus 454 i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN 486 (569)
T PRK08327 454 TVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNN 486 (569)
T ss_pred EecCcceeecCcHHHHHHHHHhCCCEEEEEEeC
Confidence 9999999999876 899999999999999999
No 71
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.89 E-value=3.8e-23 Score=162.46 Aligned_cols=94 Identities=29% Similarity=0.372 Sum_probs=80.5
Q ss_pred CHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 71 NYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 71 ~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
...-++++|++.+++++||++| |.+..|.. .|.+++ ..+|+||+++|+|+|+++| .|+++||+++|
T Consensus 11 ~~~~~~~~l~~~l~~~~iv~~D~G~~~~~~~-------~~~~~~--~~~g~mG~gl~~AiGa~la----~p~~~Vv~i~G 77 (178)
T cd02008 11 PHRPSFYALRKAFKKDSIVSGDIGCYTLGAL-------PPLNAI--DTCTCMGASIGVAIGMAKA----SEDKKVVAVIG 77 (178)
T ss_pred CChHHHHHHHHHhcCCeEEecCcCccccccc-------CChhhc--cccccCccHHHHHhhHHhh----CCCCCEEEEec
Confidence 3457899999999999999999 55554432 233333 2589999999999999999 78999999999
Q ss_pred chhhccc-HHHHHHHHHcCCCcEEEEEeC
Q psy15960 150 DSAFGFS-GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 150 DGsf~m~-~qEL~Ta~r~~lpviiiVlNN 177 (177)
||+|+|+ .+||.|+++|++|+++||+||
T Consensus 78 DG~f~~~g~~eL~ta~~~~l~i~vvV~nN 106 (178)
T cd02008 78 DSTFFHSGILGLINAVYNKANITVVILDN 106 (178)
T ss_pred ChHHhhccHHHHHHHHHcCCCEEEEEECC
Confidence 9999999 799999999999999999999
No 72
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.87 E-value=1.9e-22 Score=165.45 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=82.8
Q ss_pred CCHHHHHHHhhhhCCCCceEEcc-CcchhHHH---HHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 70 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIG---RSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 70 l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~---~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
.....+++.|++.+|++.+++.| |.+..|.. ..+++.+.+.+++.+ .++||+|+|+|+|++++ .|+|+||
T Consensus 11 C~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~--~gsmG~GlpaAiGa~~a----~p~r~VV 84 (235)
T cd03376 11 CGAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFEN--AAAVASGIEAALKALGR----GKDITVV 84 (235)
T ss_pred CccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhcC--HHHHHHHHHHHHHHhcc----CCCCeEE
Confidence 35577899999999999999999 55543221 112334445555543 37999999999999998 7999999
Q ss_pred EEEcchh-hcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQGDSA-FGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~GDGs-f~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++|||+ |+|++|||.|++|+++|+++||+||
T Consensus 85 ~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN 117 (235)
T cd03376 85 AFAGDGGTADIGFQALSGAAERGHDILYICYDN 117 (235)
T ss_pred EEEcCchHHhhHHHHHHHHHHcCCCeEEEEECC
Confidence 9999999 5899999999999999999999999
No 73
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.86 E-value=9e-22 Score=155.12 Aligned_cols=92 Identities=23% Similarity=0.410 Sum_probs=78.0
Q ss_pred HHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhc-cCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcc
Q psy15960 73 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLN-NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 150 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~-~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GD 150 (177)
+.+++.|++.+| ++++++| |.+..+. +.. ..|.+++ .+|+||+++|+|+|+++| .| ++||+++||
T Consensus 2 ~~~~~~l~~~~~-~~~vv~d~G~~~~~~----~~~~~~~~~~~---~~g~mG~~lp~AiGaala----~~-~~vv~i~GD 68 (179)
T cd03372 2 RDAIKTLIADLK-DELVVSNIGFPSKEL----YAAGDRPLNFY---MLGSMGLASSIGLGLALA----QP-RKVIVIDGD 68 (179)
T ss_pred HHHHHHHHHhCC-CCeEEeCCCHhHHHH----HHccCcccccc---cccchhhHHHHHHHHHhc----CC-CcEEEEECC
Confidence 578999999999 9999999 4443322 333 3466666 289999999999999999 56 899999999
Q ss_pred hhhcccHHHHHHHHHcCC-CcEEEEEeC
Q psy15960 151 SAFGFSGMELETLVRYRL-PVILVILYN 177 (177)
Q Consensus 151 Gsf~m~~qEL~Ta~r~~l-pviiiVlNN 177 (177)
|+|+|+.|||+|++++++ |+++||+||
T Consensus 69 G~f~m~~~el~ta~~~~~~~l~vvV~NN 96 (179)
T cd03372 69 GSLLMNLGALATIAAEKPKNLIIVVLDN 96 (179)
T ss_pred cHHHhCHHHHHHHHHcCCCCEEEEEEcC
Confidence 999999999999999995 799999998
No 74
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.86 E-value=7.3e-22 Score=157.37 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=72.6
Q ss_pred HHHHHHhhhh--CCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcc
Q psy15960 73 YAAIHAVQVS--IPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 150 (177)
Q Consensus 73 ~~~~~~l~~~--l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GD 150 (177)
+.+.+++.+. .|+++++++|.|...+..+ ++.. +..+++|||++|+|+|+++| +|+|+||+++||
T Consensus 12 ~~~~~~~~~~~~~~~d~ii~~D~G~~~~~~~-~~~~--------~~~~g~mG~glpaAiGa~la----~p~r~Vv~i~GD 78 (193)
T cd03375 12 KALAKALAELGIDPEKVVVVSGIGCSSRLPY-YFNT--------YGFHTLHGRALAVATGVKLA----NPDLTVIVVSGD 78 (193)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCChhceehh-hccc--------cchhhhhccHHHHHHHHHHh----CCCCeEEEEecc
Confidence 4455555442 3677899999444444322 2321 23459999999999999999 799999999999
Q ss_pred hh-hcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 151 SA-FGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 151 Gs-f~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|| |+|++|||+|++||++|+++||+||
T Consensus 79 Gs~f~m~~~eL~ta~~~~lpv~iiVlnN 106 (193)
T cd03375 79 GDLAAIGGNHFIHAARRNIDITVIVHNN 106 (193)
T ss_pred chHhhccHHHHHHHHHhCCCeEEEEEcC
Confidence 99 6899999999999999999999999
No 75
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.85 E-value=1.6e-21 Score=160.02 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=84.6
Q ss_pred CHHHHHHHhhhhCC--CCceEEcc-CcchhHHHHHhhhccCCCceecCC--CcccccchHHHHHHHHHHh-hhcCCCCeE
Q psy15960 71 NYYAAIHAVQVSIP--DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAG--TFGTMGVGLGFALAAALYC-NHYAPGKRV 144 (177)
Q Consensus 71 ~~~~~~~~l~~~l~--~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~--~~gsmG~~lpaAiGaala~-~~~~p~r~v 144 (177)
...-+++.|.+.++ ++.|++.| |.+..|..+ ++....+.+++.+. ..|+||+|+|+||||++|. ++..|+|+|
T Consensus 12 ~~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~V 90 (237)
T cd02018 12 GEVTAVRVVLAALPAPEDTVIANSTGCSSVYAST-APFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDV 90 (237)
T ss_pred CcHHHHHHHHHHhCCCCCEEEEeCCCccceeccc-CcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcE
Confidence 44568889999999 99999999 666665544 33333445555443 4599999999999999971 122488999
Q ss_pred EEEEcchhhc-ccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 145 VCVQGDSAFG-FSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 145 v~i~GDGsf~-m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|+++|||+|+ |++|+|+|++++++|+++||+||
T Consensus 91 v~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN 124 (237)
T cd02018 91 VVIGGDGATYDIGFGALSHSLFRGEDITVIVLDN 124 (237)
T ss_pred EEEeCchHHHhccHHHHHHHHHcCCCeEEEEECC
Confidence 9999999997 89999999999999999999999
No 76
>KOG4166|consensus
Probab=99.83 E-value=9.2e-21 Score=164.53 Aligned_cols=108 Identities=30% Similarity=0.405 Sum_probs=98.4
Q ss_pred CCCCCCCHHHHHHHhhhhCCC---CceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCC
Q psy15960 65 DESVPLNYYAAIHAVQVSIPD---NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP 140 (177)
Q Consensus 65 ~~~~~l~~~~~~~~l~~~l~~---~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p 140 (177)
.....+.|+++++.|.+.-.+ ..||.+. |.+.+|.+++ +.-+.|++++++++.|.|||||||||||++| +|
T Consensus 467 tpGe~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqf-y~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA----~P 541 (675)
T KOG4166|consen 467 TPGEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQF-YNWKKPRQWLTSGGLGTMGFGLPAAIGASVA----NP 541 (675)
T ss_pred CCccccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHH-hcccCccceeecCCccccccCcchhhccccc----Cc
Confidence 345679999999999988765 5567777 8899988765 7889999999999999999999999999999 79
Q ss_pred CCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 141 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 141 ~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+.-||-+-||+||.||.|||+|+++.++|+.|+++||
T Consensus 542 ~~iViDIDGDaSF~Mt~~ELat~rq~~~PVKiLiLNN 578 (675)
T KOG4166|consen 542 DAIVIDIDGDASFIMTVQELATIRQENLPVKILILNN 578 (675)
T ss_pred ccEEEeccCCceeeeehHhhhhhhhcCCceEEEEecc
Confidence 9999999999999999999999999999999999999
No 77
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.83 E-value=2.6e-20 Score=161.20 Aligned_cols=98 Identities=34% Similarity=0.403 Sum_probs=83.8
Q ss_pred CCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhcc-C-----CCceecCCCcccccchHHHHHHHHHHhhhcCCCCe
Q psy15960 70 LNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNN-L-----PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 143 (177)
Q Consensus 70 l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~-~-----p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~ 143 (177)
+++.++++.|.+.++++++|++|+|... +.++... . ++++++ +|+||+++|+|+|+++| .|+|+
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s---~el~~~~~~~~~~~~~~f~~---~GsMG~a~p~AlG~ala----~p~r~ 241 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTS---RELYELRDRIGQGHARDFLT---VGSMGHASQIALGLALA----RPDQR 241 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCc---HHHHHhhcccccCCCCceEe---echhhhHHHHHHHHHHH----CCCCC
Confidence 8999999999999999999999944321 1223332 2 566763 59999999999999999 79999
Q ss_pred EEEEEcchhhcccHHHHHHHHHcCC-CcEEEEEeC
Q psy15960 144 VVCVQGDSAFGFSGMELETLVRYRL-PVILVILYN 177 (177)
Q Consensus 144 vv~i~GDGsf~m~~qEL~Ta~r~~l-pviiiVlNN 177 (177)
||+++|||||+|+++||.|++++++ |+++||+||
T Consensus 242 Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNN 276 (361)
T TIGR03297 242 VVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNN 276 (361)
T ss_pred EEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 9999999999999999999999996 899999999
No 78
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.83 E-value=1.6e-20 Score=157.96 Aligned_cols=92 Identities=21% Similarity=0.353 Sum_probs=77.9
Q ss_pred CHHHHHHHhhhhC------CCCceEEcc-CcchhHHHHHhhhccCCCceecCCCc-ccccchHHHHHHHHHHhhhcCCCC
Q psy15960 71 NYYAAIHAVQVSI------PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTF-GTMGVGLGFALAAALYCNHYAPGK 142 (177)
Q Consensus 71 ~~~~~~~~l~~~l------~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~-gsmG~~lpaAiGaala~~~~~p~r 142 (177)
....+++.|++.+ |++.++++| |++.. +. .|+.+.++ ++||+++|+|+|+++| +|++
T Consensus 24 g~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~-~~----------~~~~~~~~~g~mG~alpaAiGaklA----~Pd~ 88 (286)
T PRK11867 24 GDGSILAALQRALAELGLDPENVAVVSGIGCSGR-LP----------GYINTYGFHTIHGRALAIATGLKLA----NPDL 88 (286)
T ss_pred CCHHHHHHHHHHHHHhCCCCCcEEEEeCCccccc-cC----------ccccccchhhhhhcHHHHHHHHHHh----CCCC
Confidence 3456888888888 778899999 66543 11 13444455 9999999999999999 7999
Q ss_pred eEEEEEcchh-hcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 143 RVVCVQGDSA-FGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 143 ~vv~i~GDGs-f~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+||+++|||+ |+|+++||.|++|+++|+++||+||
T Consensus 89 ~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN 124 (286)
T PRK11867 89 TVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNN 124 (286)
T ss_pred cEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeC
Confidence 9999999995 9999999999999999999999999
No 79
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.82 E-value=5.7e-20 Score=153.99 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCCCCHHHHHHHhhhh--CCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCe
Q psy15960 67 SVPLNYYAAIHAVQVS--IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 143 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~--l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~ 143 (177)
...+.+..++++|++. .+++.++++| |++..+ +....+.+ ..++||+++|+|+|+++| +|+++
T Consensus 23 g~~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~-----~~~~~~~~-----~~~~~G~alPaAiGaklA----~Pdr~ 88 (277)
T PRK09628 23 GDGVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRF-----SSYVNCNT-----VHTTHGRAVAYATGIKLA----NPDKH 88 (277)
T ss_pred CCchHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHh-----hccCCCCc-----eeeccccHHHHHHHHHHH----CCCCe
Confidence 3458899999999998 5888888999 554321 12122222 236999999999999999 79999
Q ss_pred EEEEEcchhhcc-cHHHHHHHHHcCCCcEEEEEeC
Q psy15960 144 VVCVQGDSAFGF-SGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 144 vv~i~GDGsf~m-~~qEL~Ta~r~~lpviiiVlNN 177 (177)
||+++|||+|+| +.+|+.|++|+++|+++||+||
T Consensus 89 VV~i~GDG~f~~~g~~el~ta~r~nlpi~iIV~NN 123 (277)
T PRK09628 89 VIVVSGDGDGLAIGGNHTIHGCRRNIDLNFILINN 123 (277)
T ss_pred EEEEECchHHHHhhHHHHHHHHHhCcCeEEEEEEC
Confidence 999999999974 7899999999999999999999
No 80
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.80 E-value=2.2e-19 Score=152.02 Aligned_cols=96 Identities=23% Similarity=0.303 Sum_probs=77.8
Q ss_pred CCCHHHHHHHhhhh-C-CCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 69 PLNYYAAIHAVQVS-I-PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 69 ~l~~~~~~~~l~~~-l-~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
.+-...++++|.+. + |++.++++|.|.+.+... ++. .+..+++||+++|+|+|+++| +|+++||+
T Consensus 27 ~~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~-yl~--------~~~~~g~mG~alpaAiGaklA----~pd~~VV~ 93 (301)
T PRK05778 27 FGILNAIIQALAELGLDPDKVVVVSGIGCSSKIPG-YFL--------SHGLHTLHGRAIAFATGAKLA----NPDLEVIV 93 (301)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhh-hcc--------cCccchhhccHHHHHHHHHHH----CCCCcEEE
Confidence 35667888899887 4 778888999443333322 121 233448999999999999999 79999999
Q ss_pred EEcchhh-cccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQGDSAF-GFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~GDGsf-~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++|||+| +|++|||+||+|+++|+++||+||
T Consensus 94 i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN 125 (301)
T PRK05778 94 VGGDGDLASIGGGHFIHAGRRNIDITVIVENN 125 (301)
T ss_pred EeCccHHHhccHHHHHHHHHHCCCcEEEEEeC
Confidence 9999997 599999999999999999999999
No 81
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.79 E-value=3.4e-19 Score=149.92 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=67.4
Q ss_pred CCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCc-ccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhc-ccHHH
Q psy15960 83 IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG-FSGME 159 (177)
Q Consensus 83 l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~-gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~-m~~qE 159 (177)
.|++.++++| |++. ..| +++...++ +.||+++|+|+|+++| +|+++||+++|||+|+ |++||
T Consensus 26 ~p~d~iivsdiGc~~----------~~~-~~l~~~~~~t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg~~e 90 (287)
T TIGR02177 26 DPEQVVVVSGIGCSA----------KTP-HYVNVNGFHGLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIGGNH 90 (287)
T ss_pred CCCCEEEEECCCccc----------ccC-CeEecCCcccccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhccHHH
Confidence 3667889999 5543 123 34545555 5589999999999999 7999999999999985 99999
Q ss_pred HHHHHHcCCCcEEEEEeC
Q psy15960 160 LETLVRYRLPVILVILYN 177 (177)
Q Consensus 160 L~Ta~r~~lpviiiVlNN 177 (177)
|.||+|+++|+++||+||
T Consensus 91 L~tA~r~nl~I~vIVlNN 108 (287)
T TIGR02177 91 FVAAGRRNVDITVIVHDN 108 (287)
T ss_pred HHHHHHhCcCeEEEEEEC
Confidence 999999999999999999
No 82
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.77 E-value=4.7e-19 Score=176.78 Aligned_cols=105 Identities=26% Similarity=0.356 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHhhhhCCCCceEEccCcch-----hHHHHH----------hhhccCCCceec-CCCcccccc--hHHHHH
Q psy15960 68 VPLNYYAAIHAVQVSIPDNCIIVGEGANT-----MDIGRS----------LLLNNLPRHRLD-AGTFGTMGV--GLGFAL 129 (177)
Q Consensus 68 ~~l~~~~~~~~l~~~l~~~~iiv~dg~~~-----~~~~~~----------~~~~~~p~~~i~-~~~~gsmG~--~lpaAi 129 (177)
.++++.++++.|++.+|++.+++.|+++. +|...+ ++....|++++. ++++|+||+ ++|+||
T Consensus 692 ~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lpaAI 771 (1655)
T PLN02980 692 SSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLSTAI 771 (1655)
T ss_pred CCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHHHHH
Confidence 36899999999999999999999985432 222111 122456777774 788999999 599999
Q ss_pred HHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHc--CCCcEEEEEeC
Q psy15960 130 AAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY--RLPVILVILYN 177 (177)
Q Consensus 130 Gaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~--~lpviiiVlNN 177 (177)
|+++| . +|+|++++|||||+|++|||+|++|+ ++|++|||+||
T Consensus 772 Gaala----~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN 816 (1655)
T PLN02980 772 GFAVG----C-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINN 816 (1655)
T ss_pred HHhhc----C-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeC
Confidence 99998 4 88999999999999999999999995 99999999999
No 83
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.77 E-value=4.7e-19 Score=162.08 Aligned_cols=94 Identities=26% Similarity=0.279 Sum_probs=80.7
Q ss_pred CHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 71 NYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 71 ~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
.+..++++|++.++++++++.| |++..+. ..|.+++.. +++||+++|+|+|+++| .|+++||+++|
T Consensus 363 p~~~~~~~l~~~l~~d~ivv~D~G~~~~~~-------~~p~~~~~~--~~~mG~~~~~AiGa~~a----~p~~~Vv~i~G 429 (595)
T TIGR03336 363 PHRATFYAMKKVADREAIFPSDIGCYTLGI-------QPPLGTVDT--TLCMGASIGVASGLSKA----GEKQRIVAFIG 429 (595)
T ss_pred CChHHHHHHHHhccCCcEEecCcchhhccc-------cCCccccce--eeccCchHHHHhhhhhc----CCCCCEEEEec
Confidence 4567999999999999999999 6554322 134444432 58999999999999999 79999999999
Q ss_pred chhhccc-HHHHHHHHHcCCCcEEEEEeC
Q psy15960 150 DSAFGFS-GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 150 DGsf~m~-~qEL~Ta~r~~lpviiiVlNN 177 (177)
||+|+|+ +|||.|++++++|+++||+||
T Consensus 430 DG~f~~~g~~eL~tav~~~~~i~~vVlnN 458 (595)
T TIGR03336 430 DSTFFHTGIPGLINAVYNKANITVVILDN 458 (595)
T ss_pred cchhhhcCHHHHHHHHHcCCCeEEEEEcC
Confidence 9999998 999999999999999999999
No 84
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.77 E-value=1.4e-18 Score=145.77 Aligned_cols=93 Identities=22% Similarity=0.391 Sum_probs=75.7
Q ss_pred CHHHHHHHhhhhC------CCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCe
Q psy15960 71 NYYAAIHAVQVSI------PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 143 (177)
Q Consensus 71 ~~~~~~~~l~~~l------~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~ 143 (177)
....++..|++.+ +++.++++| |++. ++.. ++.. ....++||+++|+|+|+++| +|+++
T Consensus 14 g~~~il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~-~~~~--------~~~~~~~G~alp~A~GaklA----~Pd~~ 79 (279)
T PRK11866 14 GNYGILEALRKALAELGIPPENVVVVSGIGCSS-NLPE-FLNT--------YGIHGIHGRVLPIATGVKWA----NPKLT 79 (279)
T ss_pred CChHHHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhh-hccC--------CCcccccccHHHHHHHHHHH----CCCCc
Confidence 3455666666666 677889999 6665 4332 2222 23468999999999999999 79999
Q ss_pred EEEEEcch-hhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 144 VVCVQGDS-AFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 144 vv~i~GDG-sf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
||+++||| +|+|++|||.||+|+++|+++||+||
T Consensus 80 VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN 114 (279)
T PRK11866 80 VIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNN 114 (279)
T ss_pred EEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEC
Confidence 99999999 79999999999999999999999999
No 85
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.76 E-value=2.1e-18 Score=144.69 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=67.5
Q ss_pred hCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc-HHH
Q psy15960 82 SIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GME 159 (177)
Q Consensus 82 ~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~-~qE 159 (177)
.+|++.++++| |++.. + .+++.. ....+.||+++|+|+|+++| +|+++||+++|||+|+|. +||
T Consensus 32 ~~p~d~ivvsdiG~~~~-~-~~~~~~--------~~~~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG~~e 97 (280)
T PRK11869 32 LKPRQVVIVSGIGQAAK-M-PHYINV--------NGFHTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEGGNH 97 (280)
T ss_pred CCCCCEEEEeCchHhhh-H-HHHccC--------CCCCcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCcHHH
Confidence 35778899999 65543 3 222211 23457799999999999999 799999999999999976 999
Q ss_pred HHHHHHcCCCcEEEEEeC
Q psy15960 160 LETLVRYRLPVILVILYN 177 (177)
Q Consensus 160 L~Ta~r~~lpviiiVlNN 177 (177)
|+||+|+++|+++||+||
T Consensus 98 L~tA~r~nl~i~~IV~NN 115 (280)
T PRK11869 98 LIHAIRRNPDITVLVHNN 115 (280)
T ss_pred HHHHHHhCcCcEEEEEEC
Confidence 999999999999999999
No 86
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.64 E-value=4.5e-16 Score=136.45 Aligned_cols=104 Identities=27% Similarity=0.308 Sum_probs=95.1
Q ss_pred CCCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy15960 69 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 147 (177)
Q Consensus 69 ~l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i 147 (177)
..++.+++..+++..++++||++- |+-....- .+|+...|.+|....+|++|||.+..++|+++| .|+|.|+++
T Consensus 394 ~ptq~~vigav~~~~~~~svvvcAAGsLPGdLh-kLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a----~pdreV~vm 468 (617)
T COG3962 394 LPTQTQVIGAVQRTISDDSVVVCAAGSLPGDLH-KLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAA----EPDREVYVM 468 (617)
T ss_pred CccchhHHHHHHhhcCCCcEEEEeCCCCcHHHH-HHhccCCCCceeeeecccccccccccccccccC----CCCCeEEEE
Confidence 357789999999999999999988 66665554 468899999999999999999999999999988 799999999
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|||||+|--.||.|++.++.++++++++|
T Consensus 469 VGDGSymMlnSEL~Tsv~~g~Ki~Vvl~DN 498 (617)
T COG3962 469 VGDGSYMMLNSELATSVMLGKKIIVVLLDN 498 (617)
T ss_pred EcccchhhhhHHHHHHHHcCCeEEEEEECC
Confidence 999999999999999999999999999988
No 87
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.52 E-value=2.3e-14 Score=122.16 Aligned_cols=107 Identities=24% Similarity=0.404 Sum_probs=99.3
Q ss_pred CCCCCCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
++.|+.|+++++++++.++.|..+++- |-+.. .+.+++....|+++++++..|.+||.+|+|+|...| .|+|.|
T Consensus 366 d~vp~kpqrvyeemn~~fgrd~~yvstiglsqi-a~aqflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~v 440 (592)
T COG3960 366 DNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQI-AAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNV 440 (592)
T ss_pred ccCCCCHHHHHHHHHhhcCCceeEEEeccHHHH-hhhhhhhhcCCcceeecCccCCcccccchhhceeec----CCCCce
Confidence 567999999999999999999999888 65554 555678999999999999999999999999999998 799999
Q ss_pred EEEEcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 145 VCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 145 v~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|++.||=.|||.+.||....++++|-+.+|.||
T Consensus 441 valsgdydfqfmieelavgaq~k~pyihv~vnn 473 (592)
T COG3960 441 VAISGDYDFQFLIEELAVGAQFKIPYIHVLVNN 473 (592)
T ss_pred EEeecCchHHHHHHHHhhhhcccCceEEEEecc
Confidence 999999999999999999999999999999998
No 88
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.46 E-value=8.4e-14 Score=119.90 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=57.2
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
..++||+++|.|+|+++|.+...|+++|++++|||||+|+ .++|.||+++++|+++||+||
T Consensus 120 ~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN 182 (341)
T TIGR03181 120 PNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNN 182 (341)
T ss_pred CCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECC
Confidence 4478999999999999998888899999999999999999 578999999999999999999
No 89
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.46 E-value=1.3e-13 Score=114.10 Aligned_cols=61 Identities=25% Similarity=0.271 Sum_probs=55.6
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcc--cHHHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF--SGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m--~~qEL~Ta~r~~lpviiiVlNN 177 (177)
.+|+||+++|+|+|+++|.+...++++|+|++|||+|++ +.++|.++.++++|.+++|+||
T Consensus 103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdn 165 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDS 165 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEEC
Confidence 559999999999999999877778999999999999998 5889999999999988888876
No 90
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.45 E-value=1.6e-13 Score=115.75 Aligned_cols=62 Identities=31% Similarity=0.335 Sum_probs=57.2
Q ss_pred CCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc-H-HHHHHHHHcCCCcEEEEEeC
Q psy15960 116 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-G-MELETLVRYRLPVILVILYN 177 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~-~-qEL~Ta~r~~lpviiiVlNN 177 (177)
+..|+||+++|+|+|+++|.+...|+++||+++|||+|+++ + ++|.||.++++|+++||.||
T Consensus 101 ~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN 164 (293)
T cd02000 101 GGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENN 164 (293)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeC
Confidence 35699999999999999998887899999999999999987 3 67999999999999999998
No 91
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.33 E-value=1.9e-12 Score=110.46 Aligned_cols=62 Identities=26% Similarity=0.362 Sum_probs=56.5
Q ss_pred CCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccH--HHHHHHHHcCCCcEEEEEeC
Q psy15960 116 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG--MELETLVRYRLPVILVILYN 177 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~--qEL~Ta~r~~lpviiiVlNN 177 (177)
+.+++||+++|.|+|+++|.+...+++.|++++|||+|++.. ++|.++.++++|+++||+||
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN 170 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENN 170 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcC
Confidence 456999999999999999987777899999999999998764 67999999999999999999
No 92
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.31 E-value=3.1e-12 Score=110.23 Aligned_cols=67 Identities=33% Similarity=0.527 Sum_probs=56.3
Q ss_pred CCCceecCCCcccccchHHHHHHHHHHhhhcC-------CCCeEEEEEcchhhcccHH---HHHHHHHcCCCcEEEEEeC
Q psy15960 108 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYA-------PGKRVVCVQGDSAFGFSGM---ELETLVRYRLPVILVILYN 177 (177)
Q Consensus 108 ~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~-------p~r~vv~i~GDGsf~m~~q---EL~Ta~r~~lpviiiVlNN 177 (177)
.+.+++ +.+++||+++|.|+|+++|.+... |++.|+|++|||+|+ +.+ +|.+|+++++|+++||.||
T Consensus 119 ~~~~~~--~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LPvifvv~NN 195 (341)
T CHL00149 119 APHNFL--GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVLWKLPIIFVVENN 195 (341)
T ss_pred hhcCcc--CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhhcCCCEEEEEEeC
Confidence 344555 467999999999999999965432 789999999999997 433 7999999999999999999
No 93
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.25 E-value=1.3e-11 Score=98.71 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=56.0
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhc--ccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~--m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
..|++|.++|.|+|+++|.+...++++|++++|||+|+ +..++|.+|.++++|+++||.||
T Consensus 73 ~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN 135 (195)
T cd02007 73 GTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDN 135 (195)
T ss_pred CCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECC
Confidence 56999999999999999987766789999999999999 78899999999999999988887
No 94
>PRK05899 transketolase; Reviewed
Probab=99.17 E-value=4.4e-11 Score=110.27 Aligned_cols=61 Identities=25% Similarity=0.218 Sum_probs=53.5
Q ss_pred CcccccchHHHHHHHHHHhhhcCC----------CCeEEEEEcchhhcccH-HH-HHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAP----------GKRVVCVQGDSAFGFSG-ME-LETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p----------~r~vv~i~GDGsf~m~~-qE-L~Ta~r~~lpviiiVlNN 177 (177)
..|+||+++|+|+|+++|.+.... +++|+|++|||+|+++. +| |.||.+++||.+++|+||
T Consensus 116 ~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dn 188 (624)
T PRK05899 116 TTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDD 188 (624)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEC
Confidence 479999999999999999764433 78999999999999995 55 999999999988888876
No 95
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.07 E-value=2.7e-10 Score=100.96 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=54.6
Q ss_pred CCcccccchHHHHHHHHHHhhhc-------CCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 116 GTFGTMGVGLGFALAAALYCNHY-------APGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~~~-------~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
+.++.||+++|.|+|+++|.+.. .+++.|+|++|||+++.. ..+|.+|..+++|+++||.||
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN 261 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 261 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCC
Confidence 56689999999999999997654 258899999999999866 359999999999999999999
No 96
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.01 E-value=4.5e-10 Score=102.89 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=53.3
Q ss_pred CcccccchHHHHHHHHHHhhhc-CCCCeEEEEEcchhhc--ccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHY-APGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~-~p~r~vv~i~GDGsf~--m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
..|++|.++|.|+|+++|.+.. .++++|+|++|||+++ |+.++|.+|.++++|+++||-||
T Consensus 115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN 178 (580)
T PRK05444 115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDN 178 (580)
T ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECC
Confidence 5699999999999999998765 4789999999999996 88999999999999986555554
No 97
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.83 E-value=1.5e-08 Score=85.95 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=78.0
Q ss_pred CCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy15960 70 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ 148 (177)
Q Consensus 70 l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~ 148 (177)
....-+++.|.+.+.++.|++.+ |+++.+.+. +. ..|.. .+...+.+|-+.+.|.|++.|.+...++++||++.
T Consensus 24 Cg~~~~~~~l~~a~g~~~vi~~~iGC~s~~~~~--~p-~~~~~--~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~ 98 (299)
T PRK11865 24 CGAAIAMRLALKALGKNTVIVVATGCLEVITTP--YP-ETAWN--VPWIHVAFENAAAVASGIERAVKALGKKVNVVAIG 98 (299)
T ss_pred CCcHHHHHHHHHHcCCCEEEEeCCCcccccCcc--Cc-CCccc--cccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 44567888888888888999999 777654221 11 11211 23455788889999999988865445677999999
Q ss_pred cchhh-cccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 149 GDSAF-GFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 149 GDGsf-~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|||++ -...+.|.-+++.+.++++||+||
T Consensus 99 GDG~~~dIG~~~L~~a~~r~~ni~~ivlDN 128 (299)
T PRK11865 99 GDGGTADIGFQSLSGAMERGHNILYLMYDN 128 (299)
T ss_pred CCchHhhccHHHHHHHHHcCCCeEEEEECC
Confidence 99988 445899999999999999999999
No 98
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=98.79 E-value=7.1e-09 Score=91.70 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhcc-CCCceecCCCcccccchHHHHHHHHH
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNN-LPRHRLDAGTFGTMGVGLGFALAAAL 133 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~-~p~~~i~~~~~gsmG~~lpaAiGaal 133 (177)
+.+++|.+++++|++.+|+|.+|+.|++++..+..+++... .|++++++.++|+||++||+||||++
T Consensus 364 ~~~i~p~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 364 EEPLSELSLARALSQLLPEGAALFVGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred cCCccHHHHHHHHHHhCCCCCeEEEECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 45799999999999999999999999665544555557666 78999999999999999999999986
No 99
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=98.77 E-value=2.4e-08 Score=89.89 Aligned_cols=103 Identities=17% Similarity=0.060 Sum_probs=88.2
Q ss_pred CCCHHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy15960 69 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 147 (177)
Q Consensus 69 ~l~~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i 147 (177)
.++...+..+|++.+|+++.++.. +....++... +....+.+.+++.+-..|-..++.|+|++.| ..+|++++
T Consensus 372 ~~~e~~~a~~l~~~lp~~~~LFvgNSmpVRdvd~~-~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a-----~~~ptv~l 445 (566)
T COG1165 372 ALTEAHLAAALADLLPPQDQLFVGNSMPVRDVDAL-GQLPAGYRVYSNRGASGIDGTVSTALGIARA-----TQKPTVAL 445 (566)
T ss_pred CchhhHHHHHHHHhCCCCCeEEEecCchhhhHHHh-ccCccCceeecCCCccccchhHHHHhhhhhh-----cCCceEEE
Confidence 678889999999999999887766 6666565543 3444667788899888898889999999998 56789999
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+||-||.+..+.|........|.+|||+||
T Consensus 446 iGDLS~lhD~NgLl~~k~~~~~ltIvv~NN 475 (566)
T COG1165 446 IGDLSFLHDLNGLLLLKKVPQPLTIVVVNN 475 (566)
T ss_pred EechhhhhccchHhhcCCCCCCeEEEEEeC
Confidence 999999999999999999999999999998
No 100
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.70 E-value=2.6e-08 Score=92.42 Aligned_cols=56 Identities=30% Similarity=0.373 Sum_probs=45.0
Q ss_pred cccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhh--cccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 118 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF--GFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 118 ~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf--~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
.++||+++|+|+|++++ .++++|+|++|||+| .+..+++.+|.++++|+++|+-||
T Consensus 122 ~gslg~a~G~A~a~~~~----~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN 179 (641)
T PRK12571 122 STSISAALGFAKARALG----QPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDN 179 (641)
T ss_pred cChHHHHHHHHHHHHHh----CCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECC
Confidence 45666666666666665 788999999999999 556789999999999987766665
No 101
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.68 E-value=7.5e-08 Score=81.74 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=73.0
Q ss_pred HHHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcC-CCCeEEEEEc
Q psy15960 72 YYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYA-PGKRVVCVQG 149 (177)
Q Consensus 72 ~~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~-p~r~vv~i~G 149 (177)
..-+++.+.+.+.+++|++.| |++....+. ++.. .+-.+.....+|.+.+.|.|++.|.+... ++..|+++.|
T Consensus 26 ~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~--~p~~---~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~G 100 (300)
T PRK11864 26 APLGLRYLLKALGEKTVLVIPASCSTVIQGD--TPKS---PLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAG 100 (300)
T ss_pred CHHHHHHHHHHhCCCeEEEeCCCccceecCC--CCcc---cccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence 344557777778888999999 766532111 1111 11123346888999999999999854322 3456777999
Q ss_pred chhh-cccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 150 DSAF-GFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 150 DGsf-~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
||++ ....+.|.-|+..++|+++||+||
T Consensus 101 DG~~~~~g~~~l~~A~~~~~~v~~vv~dN 129 (300)
T PRK11864 101 DGGTADIGFQALSGAAERNHDILYIMYDN 129 (300)
T ss_pred cCccccccHHHHHHHHHhCcCEEEEEECC
Confidence 9998 556899999999999999999999
No 102
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.35 E-value=7.8e-07 Score=75.42 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=50.9
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcch-hhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 119 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 119 gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG-sf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+.-|-+.+.|.|+++| .++..||++.||| ++-...+.|..+.|.+.++++||+||
T Consensus 70 s~~gra~a~atGik~A----~~~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DN 125 (294)
T COG1013 70 SLHGRAAAVATGIKLA----NPALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDN 125 (294)
T ss_pred eccCcchhhHHHHHHh----ccCCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECC
Confidence 4457889999999999 7899999999999 77889999999999999999999998
No 103
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=98.27 E-value=1.5e-06 Score=75.74 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=51.7
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc-H-HHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-G-MELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~-~-qEL~Ta~r~~lpviiiVlNN 177 (177)
..+.+|.++|.|+|+++|.+....++.++++.|||+..-. + ..|..|..+++|+++||-||
T Consensus 136 ~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN 198 (362)
T PLN02269 136 GHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENN 198 (362)
T ss_pred cCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCC
Confidence 4588899999999999999887778899999999997665 2 35556778899999999998
No 104
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.24 E-value=7.6e-06 Score=68.20 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=64.1
Q ss_pred HHHHHHHhhhhC-CCCceEEccCcchhHHHHHhhh--------ccC-------CC---ceecCCCcccccchHHHHHHHH
Q psy15960 72 YYAAIHAVQVSI-PDNCIIVGEGANTMDIGRSLLL--------NNL-------PR---HRLDAGTFGTMGVGLGFALAAA 132 (177)
Q Consensus 72 ~~~~~~~l~~~l-~~~~iiv~dg~~~~~~~~~~~~--------~~~-------p~---~~i~~~~~gsmG~~lpaAiGaa 132 (177)
.-++.=+|...+ .|.|-|+-|.|+..+.-.- +. +++ |. +-+-..+.|.-|.++++|+|.+
T Consensus 46 vVELTiALH~vFd~p~DkivwDvGHQ~Y~HKi-LTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma 124 (270)
T PF13292_consen 46 VVELTIALHYVFDSPKDKIVWDVGHQAYVHKI-LTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMA 124 (270)
T ss_dssp CHHHHHHHHHHS-TTTSEEEESSSTT-HHHHH-CTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEecccccchhhh-ccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHH
Confidence 345666677776 3677888898887655321 11 110 00 0011123355677899999999
Q ss_pred HHhhhcCCCCeEEEEEcchhhc--ccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 133 LYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 133 la~~~~~p~r~vv~i~GDGsf~--m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+|..+.+++++||+++||||+. |....|-.+...+-+++||+=+|
T Consensus 125 ~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN 171 (270)
T PF13292_consen 125 VARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDN 171 (270)
T ss_dssp HHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-
T ss_pred HHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 9988888899999999999994 55668888888888866655443
No 105
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=98.23 E-value=3.2e-06 Score=68.79 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=51.3
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEE
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIL 175 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVl 175 (177)
..||+|.||+.|+|.++|.+....+.+|++++|||-+.-. .....+|++|+|+-+|.++
T Consensus 117 stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaiv 177 (243)
T COG3959 117 STGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIV 177 (243)
T ss_pred cCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEE
Confidence 4599999999999999999998889999999999999875 5688999999997555444
No 106
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.19 E-value=3.4e-06 Score=77.58 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=51.3
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
..|..|.++|.|+|+++|.+....+++|+|++|||+++-. ...|..|..+++|+++||-||
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN 173 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDN 173 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECC
Confidence 4466677899999999998777778899999999999874 457888888999988888887
No 107
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=98.15 E-value=5.4e-06 Score=76.80 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=51.6
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
..|+.|.+++.|+|.++|.+...++.+|++++|||+++-. ...+..|..+++|+++||-||
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N 171 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDN 171 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEEEECC
Confidence 4577888999999999999888888999999999999775 457778889999996666665
No 108
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.12 E-value=4.9e-06 Score=77.70 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHhhhhC-CCCceEEccCcchhHHHHHhh-------hccC-------CCce---ecCCCcccccchHHHHH
Q psy15960 68 VPLNYYAAIHAVQVSI-PDNCIIVGEGANTMDIGRSLL-------LNNL-------PRHR---LDAGTFGTMGVGLGFAL 129 (177)
Q Consensus 68 ~~l~~~~~~~~l~~~l-~~~~iiv~dg~~~~~~~~~~~-------~~~~-------p~~~---i~~~~~gsmG~~lpaAi 129 (177)
..++.-.+.-+|-..+ .++|.++-|.||..+.....+ .++. |.+. ......|+.|.+++.|+
T Consensus 75 ~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~ 154 (677)
T PLN02582 75 SSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGL 154 (677)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHH
Confidence 4467666666665444 356777777665543321110 1111 1110 01124688999999999
Q ss_pred HHHHHhhhcCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 130 AAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 130 Gaala~~~~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
|.++|.+....+++|++++|||+++-. ...|..|..+++|+++||-||
T Consensus 155 G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N 204 (677)
T PLN02582 155 GMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 204 (677)
T ss_pred HHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECC
Confidence 999998877788899999999999765 457777888899977777776
No 109
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=98.11 E-value=3.1e-06 Score=72.97 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=44.6
Q ss_pred CcccccchHHHHHHHHHHhhhc----------CCCCeEEEEEcchhhcccH--HHHHHHHHcCCCcEEEEEe
Q psy15960 117 TFGTMGVGLGFALAAALYCNHY----------APGKRVVCVQGDSAFGFSG--MELETLVRYRLPVILVILY 176 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~----------~p~r~vv~i~GDGsf~m~~--qEL~Ta~r~~lpviiiVlN 176 (177)
..|++|.|++.|+|.|+|.+.. .-+.+|+|++|||.+|-.. ..++.|.+++|+=+|+|++
T Consensus 109 stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D 180 (332)
T PF00456_consen 109 STGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYD 180 (332)
T ss_dssp --SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEE
T ss_pred eccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEe
Confidence 5699999999999999997642 1256899999999999864 4788899999985555543
No 110
>PTZ00089 transketolase; Provisional
Probab=98.08 E-value=6.8e-06 Score=76.67 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=49.0
Q ss_pred CcccccchHHHHHHHHHHhhhcCC----------CCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAP----------GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p----------~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
..|++|.+++.|+|.++|.+.... +.+|+|++|||+++-. ...+..|..++||.+|+|+||
T Consensus 114 ~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~ 186 (661)
T PTZ00089 114 TTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDD 186 (661)
T ss_pred CCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 469999999999999999876432 6789999999999876 347777889999866555554
No 111
>PLN02790 transketolase
Probab=98.04 E-value=1.2e-05 Score=75.05 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=48.9
Q ss_pred CCcccccchHHHHHHHHHHhhhc-----CC-----CCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 116 GTFGTMGVGLGFALAAALYCNHY-----AP-----GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~~~-----~p-----~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
...|++|.+++.|+|+++|.+.. .+ +.+|+|++|||+++-. ...+..|..++||-+|+|+||
T Consensus 102 ~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~ 175 (654)
T PLN02790 102 VTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDD 175 (654)
T ss_pred ccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEec
Confidence 35699999999999999998742 22 5789999999999876 347778889999866655554
No 112
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=98.04 E-value=1.1e-05 Score=70.70 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=47.7
Q ss_pred CcccccchHHHHHHHHHHhhh-------cCCCCeEEEEEcchhhcccH--HHHHHHHHcCCCcEEEEEe
Q psy15960 117 TFGTMGVGLGFALAAALYCNH-------YAPGKRVVCVQGDSAFGFSG--MELETLVRYRLPVILVILY 176 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~-------~~p~r~vv~i~GDGsf~m~~--qEL~Ta~r~~lpviiiVlN 176 (177)
..||+|.|++.|+|.|+|.+. ...+.+|+|++|||.++-.. ..+..|..++|+-+|+|+|
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD 184 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVN 184 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 459999999999999999875 23578999999999998863 4777788999854555544
No 113
>PRK12753 transketolase; Reviewed
Probab=98.04 E-value=9.9e-06 Score=75.63 Aligned_cols=60 Identities=18% Similarity=0.101 Sum_probs=47.7
Q ss_pred CcccccchHHHHHHHHHHhhhcCC----------CCeEEEEEcchhhcccH--HHHHHHHHcCCCcEEEEEe
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAP----------GKRVVCVQGDSAFGFSG--MELETLVRYRLPVILVILY 176 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p----------~r~vv~i~GDGsf~m~~--qEL~Ta~r~~lpviiiVlN 176 (177)
..|++|.+++.|+|.|+|.+.... +.+|+|++|||+++-.. ..+..|.+++||-+|+|+|
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd 183 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYD 183 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEE
Confidence 569999999999999999875421 57899999999998863 3677788999985554444
No 114
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=97.97 E-value=1.4e-05 Score=74.27 Aligned_cols=61 Identities=20% Similarity=0.136 Sum_probs=48.6
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
..|+.|.||++|+|.|+|.+....+.+|++++|||+++-. ...+..|.+++-++++||=+|
T Consensus 175 ~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN 237 (641)
T PLN02234 175 GTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDN 237 (641)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECC
Confidence 4689999999999999998887788899999999999765 457777776665555555444
No 115
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=97.97 E-value=2.1e-05 Score=66.83 Aligned_cols=61 Identities=28% Similarity=0.324 Sum_probs=50.3
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc-HH-HHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GM-ELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~-~q-EL~Ta~r~~lpviiiVlNN 177 (177)
..+.+|..+|.|.|+++|.+....+.-++|+.|||+..-. +. .|-.|..+++|+++||-||
T Consensus 99 ~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN 161 (300)
T PF00676_consen 99 ASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENN 161 (300)
T ss_dssp EESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred ccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecC
Confidence 3467788899999999999887777888999999996543 33 5666788999999999998
No 116
>PRK12754 transketolase; Reviewed
Probab=97.96 E-value=1.9e-05 Score=73.74 Aligned_cols=62 Identities=18% Similarity=0.086 Sum_probs=49.3
Q ss_pred CCcccccchHHHHHHHHHHhhhcC----------CCCeEEEEEcchhhcccH--HHHHHHHHcCCCcE-EEEEeC
Q psy15960 116 GTFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFGFSG--MELETLVRYRLPVI-LVILYN 177 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~~~~----------p~r~vv~i~GDGsf~m~~--qEL~Ta~r~~lpvi-iiVlNN 177 (177)
...|++|.+++.|+|.++|.+... -+.+|+|++|||+++-.. ..+..|..++||.+ +||-||
T Consensus 111 ~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N 185 (663)
T PRK12754 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDN 185 (663)
T ss_pred ccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 356999999999999999987643 267899999999999863 36777889999954 555555
No 117
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=97.95 E-value=2e-05 Score=73.44 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=49.0
Q ss_pred CCcccccchHHHHHHHHHHhhhcC----------CCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEE-eC
Q psy15960 116 GTFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIL-YN 177 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~~~~----------p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVl-NN 177 (177)
...|++|.++|.|+|+++|.+... .+.+|+|++|||+++-. ...+..|..++||-+|+|+ ||
T Consensus 107 ~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N 181 (653)
T TIGR00232 107 ATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSN 181 (653)
T ss_pred eCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 356999999999999999987541 36789999999999886 3367778899999655554 44
No 118
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.73 E-value=4.4e-05 Score=74.88 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=63.9
Q ss_pred hCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc-HHH
Q psy15960 82 SIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GME 159 (177)
Q Consensus 82 ~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~-~qE 159 (177)
.++++.++..| |++++.. +... . ..++.+||.+.+.++|.+-+ ..+++||.++|||.|.++ +..
T Consensus 440 k~~~~~~~~gdIGC~tl~~----~~~~-~-----~~~~~~MG~~g~~~~G~a~~----~~~~~v~a~iGDgTf~HSG~~a 505 (1159)
T PRK13030 440 KVPEGSIAQAGIGCHFMAS----WMDR-D-----TTGLTQMGGEGVDWIGHAPF----TETKHVFQNLGDGTYFHSGSLA 505 (1159)
T ss_pred ccCCCCEeecCcCHHHHhh----cccc-c-----cceeeccCccchhhceeccc----cCCCCEEEEeccchhhhcCHHH
Confidence 34566788888 8877533 2211 1 23567888888888997776 456789999999999998 679
Q ss_pred HHHHHHcCCCcEEEEEeC
Q psy15960 160 LETLVRYRLPVILVILYN 177 (177)
Q Consensus 160 L~Ta~r~~lpviiiVlNN 177 (177)
|..|+..+.+++++|++|
T Consensus 506 l~~AV~~~~nit~~IL~N 523 (1159)
T PRK13030 506 IRQAVAAGANITYKILYN 523 (1159)
T ss_pred HHHHHhcCCCeEEEEEeC
Confidence 999999999999999998
No 119
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=97.72 E-value=8e-05 Score=64.70 Aligned_cols=61 Identities=28% Similarity=0.284 Sum_probs=49.6
Q ss_pred CcccccchHHHHHHHHHHhhhcC-CCCeEEEEEcchhhccc-HH-HHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYA-PGKRVVCVQGDSAFGFS-GM-ELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~-p~r~vv~i~GDGsf~m~-~q-EL~Ta~r~~lpviiiVlNN 177 (177)
..+.+|..+|-|.|+++|.+... .++-+++++|||+-.-. .. .|--|.-+++|++++|-||
T Consensus 134 ~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN 197 (358)
T COG1071 134 GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENN 197 (358)
T ss_pred CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecC
Confidence 45788999999999999988766 34478999999998665 34 4555778999999999998
No 120
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=97.68 E-value=9.9e-05 Score=70.30 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=50.5
Q ss_pred CCcccccchHHHHHHHHHHhhh-------cCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 116 GTFGTMGVGLGFALAAALYCNH-------YAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~~-------~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
...||||.|++.|+|.|++.+- ...+++|+|++|||.++-. ...+..|.+++|+=+|+|+|+
T Consensus 186 ~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~ 256 (885)
T TIGR00759 186 FPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINC 256 (885)
T ss_pred eCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 3569999999999999998763 2357899999999999885 457888999999766666653
No 121
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=97.68 E-value=9e-05 Score=70.95 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=49.1
Q ss_pred CCcccccchHHHHHHHHHHhh-hc------CCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEe
Q psy15960 116 GTFGTMGVGLGFALAAALYCN-HY------APGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILY 176 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~-~~------~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlN 176 (177)
...||||.|++.|+|.|++.+ +. ..+++|+|++|||.++-. ...+..|.+++|+=+|+|+|
T Consensus 186 ~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD 255 (889)
T TIGR03186 186 FPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVIN 255 (889)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEe
Confidence 356999999999999999765 21 126899999999999886 44788899999976666665
No 122
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.67 E-value=6.5e-05 Score=73.66 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=63.9
Q ss_pred CCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc-HHHH
Q psy15960 83 IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMEL 160 (177)
Q Consensus 83 l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~-~qEL 160 (177)
+|++.++..| |++++.. + .|... .++.+||.+.+.++|.+-. ..+++||.++|||.|.++ +..|
T Consensus 454 vp~gs~~~~dIGChtl~~----~---~p~~~---~~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~~al 519 (1165)
T PRK09193 454 VPEGSRALAGIGCHYMAT----W---MDRNT---STFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGLLAI 519 (1165)
T ss_pred cCCCCEEecCcChhhhcc----C---CCCCC---CeeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCHHHH
Confidence 4777888889 8877532 1 12221 3567888888888887665 456889999999999998 6799
Q ss_pred HHHHHcCCCcEEEEEeC
Q psy15960 161 ETLVRYRLPVILVILYN 177 (177)
Q Consensus 161 ~Ta~r~~lpviiiVlNN 177 (177)
..|+..+.+++++|+.|
T Consensus 520 ~~AV~~~~nit~~IL~N 536 (1165)
T PRK09193 520 RAAVAAGVNITYKILYN 536 (1165)
T ss_pred HHHHhcCCCeEEEEEeC
Confidence 99999999999999988
No 123
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=97.65 E-value=0.00025 Score=66.51 Aligned_cols=106 Identities=15% Similarity=0.077 Sum_probs=70.1
Q ss_pred CCCHHHHHHHhhhhCC-CCceEEccCcchhHHHHHhhh-----ccCCCce-------------ecCCCcccccchHHHHH
Q psy15960 69 PLNYYAAIHAVQVSIP-DNCIIVGEGANTMDIGRSLLL-----NNLPRHR-------------LDAGTFGTMGVGLGFAL 129 (177)
Q Consensus 69 ~l~~~~~~~~l~~~l~-~~~iiv~dg~~~~~~~~~~~~-----~~~p~~~-------------i~~~~~gsmG~~lpaAi 129 (177)
.|..-++-=+|...+. |.|-|+-|.|+..+...- +. +.. +++ +-..+.|.-+.++++|+
T Consensus 122 nLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKi-LTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaal 199 (701)
T PLN02225 122 SFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKV-LTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGL 199 (701)
T ss_pred CccHHHHHHHHHHHhCCCCCceeeccccccchhhH-hcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHH
Confidence 3556677777777774 667788897776544221 11 110 111 01112244455799999
Q ss_pred HHHHHhhhcCCCCeEEEEEcchhh--cccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 130 AAALYCNHYAPGKRVVCVQGDSAF--GFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 130 Gaala~~~~~p~r~vv~i~GDGsf--~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
|.+.|..+...++.||+++||||+ .|....|-.+...+-++ |||+|+
T Consensus 200 G~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~l-ivILND 248 (701)
T PLN02225 200 GLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNM-IVILND 248 (701)
T ss_pred HHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCE-EEEEeC
Confidence 999998887888999999999998 45666888888877775 555564
No 124
>KOG0523|consensus
Probab=97.62 E-value=0.00013 Score=66.50 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=52.0
Q ss_pred cCCCcccccchHHHHHHHHHHhhhcCC-CCeEEEEEcchhhcccH--HHHHHHHHcCCCcEEEEEeC
Q psy15960 114 DAGTFGTMGVGLGFALAAALYCNHYAP-GKRVVCVQGDSAFGFSG--MELETLVRYRLPVILVILYN 177 (177)
Q Consensus 114 ~~~~~gsmG~~lpaAiGaala~~~~~p-~r~vv~i~GDGsf~m~~--qEL~Ta~r~~lpviiiVlNN 177 (177)
...+.|++|.|+++|+|.|++.+.... +-+|+|++|||..+-.. ..++-|..++++-+|++.+|
T Consensus 113 v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~ 179 (632)
T KOG0523|consen 113 VEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDN 179 (632)
T ss_pred ceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEcc
Confidence 344669999999999999998765544 67999999999998863 36677889999988887754
No 125
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.62 E-value=8.3e-05 Score=68.27 Aligned_cols=55 Identities=31% Similarity=0.399 Sum_probs=47.7
Q ss_pred cccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc-HHHHHHHHHcCCCcEEEEEeC
Q psy15960 118 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 118 ~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~-~qEL~Ta~r~~lpviiiVlNN 177 (177)
.-.||.+++.|-|+.++ ..+++|+++|||.|.++ ++.|..|+..+.+++++|++|
T Consensus 427 t~~mGssig~a~g~~~~-----~~k~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN 482 (640)
T COG4231 427 TTMMGSSIGIAGGLSFA-----STKKIVAVIGDSTFFHSGILALINAVYNKANILVVVLDN 482 (640)
T ss_pred hhhccchhhhccccccc-----cCCceEEEeccccccccCcHHHHHHHhcCCCeEEEEEec
Confidence 35677778888888776 34899999999999998 678999999999999999998
No 126
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.52 E-value=0.00013 Score=71.51 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=63.0
Q ss_pred CCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc-HHHHH
Q psy15960 84 PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELE 161 (177)
Q Consensus 84 ~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~-~qEL~ 161 (177)
+++.++..| |++++.. +... . ..++.+||.+....+|.+-. ..+++||..+|||.|.++ +..|-
T Consensus 469 ~~gs~~~~dIGChtl~~----~~~~-~-----~~~~~~MGgeg~~~~G~a~f----~~~~hv~aniGDgTffHSG~~alr 534 (1186)
T PRK13029 469 PEGSRALAGIGCHYMAM----WMDR-S-----TEGFSQMGGEGVAWIGQMPF----SRRRHVFQNLGDGTYFHSGLLAIR 534 (1186)
T ss_pred CCCCEEecCcCHHHHhh----cccc-c-----cceeeccCcchhhheeeccc----CCCCCEEEEeccccchhcCHHHHH
Confidence 567788889 8877533 2211 1 23567888888888887766 456789999999999998 67999
Q ss_pred HHHHcCCCcEEEEEeC
Q psy15960 162 TLVRYRLPVILVILYN 177 (177)
Q Consensus 162 Ta~r~~lpviiiVlNN 177 (177)
.++..+.+++++|+.|
T Consensus 535 ~AV~~~~nit~kIL~N 550 (1186)
T PRK13029 535 QAIAAGVNITYKILYN 550 (1186)
T ss_pred HHHhcCCCEEEEEEeC
Confidence 9999999999999988
No 127
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=97.45 E-value=0.0003 Score=67.60 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=50.5
Q ss_pred CCcccccchHHHHHHHHHHhh-------hcCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 116 GTFGTMGVGLGFALAAALYCN-------HYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~-------~~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
...||||.|++.|+|.+++.+ ....+++|+||+|||.++-. ...+..|.+++|+=+|+|+|+
T Consensus 200 ~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~ 270 (896)
T PRK13012 200 FPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINC 270 (896)
T ss_pred cCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 356999999999999999865 12356899999999999875 457888999999877777763
No 128
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=97.33 E-value=0.00031 Score=58.81 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=46.6
Q ss_pred CcccccchHHHHHHHHHHhhhcCC-----CCeEEEEEcchhh--cccHHHHHHH-HHcCCC---cEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAP-----GKRVVCVQGDSAF--GFSGMELETL-VRYRLP---VILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p-----~r~vv~i~GDGsf--~m~~qEL~Ta-~r~~lp---viiiVlNN 177 (177)
.-+.+|...|.|.|++.|.+.... +.-+|++.|||+| |=.+.|-..+ .-.++| +++||.||
T Consensus 111 npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNN 182 (265)
T cd02016 111 NPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNN 182 (265)
T ss_pred CCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeC
Confidence 347789999999999999887652 4566899999997 4456665554 445777 89999998
No 129
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=97.27 E-value=0.00044 Score=63.40 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCHHHHHHHhhhhC-CCCceEEccCcchhHHHHHh---------hhccC-----CCceecCC---CcccccchHHHHHHH
Q psy15960 70 LNYYAAIHAVQVSI-PDNCIIVGEGANTMDIGRSL---------LLNNL-----PRHRLDAG---TFGTMGVGLGFALAA 131 (177)
Q Consensus 70 l~~~~~~~~l~~~l-~~~~iiv~dg~~~~~~~~~~---------~~~~~-----p~~~i~~~---~~gsmG~~lpaAiGa 131 (177)
|-.-++-=+|...+ .|.|.++-|.|+..+.-.-+ ++... |.+--+.. ..|.-+.++++|+|.
T Consensus 48 LGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~ 127 (627)
T COG1154 48 LGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGM 127 (627)
T ss_pred cChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhH
Confidence 44455555666666 36677778877664432110 11111 11100111 223445579999999
Q ss_pred HHHhhhcCCCCeEEEEEcchhh--cccHHHHHHHH-HcCCCcEEEEEeC
Q psy15960 132 ALYCNHYAPGKRVVCVQGDSAF--GFSGMELETLV-RYRLPVILVILYN 177 (177)
Q Consensus 132 ala~~~~~p~r~vv~i~GDGsf--~m~~qEL~Ta~-r~~lpviiiVlNN 177 (177)
+.|......++.||+++||||+ .|....|-.+- ..+-| .|||+|+
T Consensus 128 A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~-~iVILND 175 (627)
T COG1154 128 AKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSN-LIVILND 175 (627)
T ss_pred HHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCC-EEEEEeC
Confidence 9998777788999999999998 45666777776 22344 5556664
No 130
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=97.26 E-value=0.00042 Score=56.77 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=30.6
Q ss_pred CcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcc
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF 155 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m 155 (177)
..|++|++++.|+|+++. +++..|+|++|||.+.-
T Consensus 60 ~~G~LG~gLs~A~G~a~d----~~d~iv~~vvGDGE~ee 94 (227)
T cd02011 60 EGGELGYSLSHAYGAVFD----NPDLIVACVVGDGEAET 94 (227)
T ss_pred cccchhhHHHHHHHhhhc----CCCcEEEEEECcCHHHH
Confidence 348999999999999886 78899999999999644
No 131
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=97.23 E-value=0.00078 Score=64.68 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=50.0
Q ss_pred CcccccchHHHHHHHHHHhh-------hcCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCN-------HYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~-------~~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
..+|||.|++.|+|++++.+ ....+++|+||+|||.++-. ...+..|.+++|+=+|+|+|+
T Consensus 193 ~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~ 262 (891)
T PRK09405 193 PTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINC 262 (891)
T ss_pred CccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 45999999999999999866 12347899999999999885 458888999999877777763
No 132
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.15 E-value=0.0016 Score=56.86 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=34.2
Q ss_pred CCeEEEEEcch-hhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 141 GKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 141 ~r~vv~i~GDG-sf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+..|+++.||| ++-...+.|.-+.+.+.++++||+||
T Consensus 151 ~~~v~v~gGDG~~ydIG~~~l~ha~~r~~ni~~iv~DN 188 (365)
T cd03377 151 KKSVWIIGGDGWAYDIGYGGLDHVLASGENVNILVLDT 188 (365)
T ss_pred ccceEEEecchhhhccchhhHHHHHHcCCCeEEEEECC
Confidence 46899999999 66889999999999999999999998
No 133
>PRK05261 putative phosphoketolase; Provisional
Probab=96.62 E-value=0.0031 Score=59.96 Aligned_cols=34 Identities=35% Similarity=0.466 Sum_probs=30.0
Q ss_pred cccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcc
Q psy15960 118 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF 155 (177)
Q Consensus 118 ~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m 155 (177)
.|++|++++.|+|+++. .|+..|+|++|||.+.-
T Consensus 141 ~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~Ee 174 (785)
T PRK05261 141 GGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAET 174 (785)
T ss_pred CCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhh
Confidence 48899999999999987 78999999999999543
No 134
>KOG0225|consensus
Probab=96.57 E-value=0.0032 Score=54.21 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=48.5
Q ss_pred CCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc--HHHHHHHHHcCCCcEEEEEeC
Q psy15960 116 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 116 ~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~--~qEL~Ta~r~~lpviiiVlNN 177 (177)
++.|-+|..+|.+.|+++|.+-...+.-++++-|||+..-. ...+-.|.-.+||+++++-||
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN 225 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENN 225 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccC
Confidence 34567788899999999997654455667888999998654 345666778899999999998
No 135
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=96.44 E-value=0.0042 Score=60.13 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=45.7
Q ss_pred ccccchHHHHHHHHHHhhhcCCC------CeEEEEEcchhh--cccHHHHHH-HHHcCCC---cEEEEEeC
Q psy15960 119 GTMGVGLGFALAAALYCNHYAPG------KRVVCVQGDSAF--GFSGMELET-LVRYRLP---VILVILYN 177 (177)
Q Consensus 119 gsmG~~lpaAiGaala~~~~~p~------r~vv~i~GDGsf--~m~~qEL~T-a~r~~lp---viiiVlNN 177 (177)
+.+|...|.|.|++.|.+....+ .-+|++.|||+| |=.+.|-.. +.-.++| +++||.||
T Consensus 314 Shleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNN 384 (924)
T PRK09404 314 SHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINN 384 (924)
T ss_pred cccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeC
Confidence 55677889999999998775544 467889999998 445666555 5566887 99999998
No 136
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.007 Score=56.03 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=46.2
Q ss_pred CcccccchHHHHHHHHHHhhhc-----CC-----CCeEEEEEcchhhcccH-HHHHH-HHHcCCCcEEEEEe
Q psy15960 117 TFGTMGVGLGFALAAALYCNHY-----AP-----GKRVVCVQGDSAFGFSG-MELET-LVRYRLPVILVILY 176 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~-----~p-----~r~vv~i~GDGsf~m~~-qEL~T-a~r~~lpviiiVlN 176 (177)
..|.+|.|++.|+|.++|.+.. +| +..++|++|||.+|-.+ +|-.. |-.++|.=+|++.+
T Consensus 114 TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD 185 (663)
T COG0021 114 TTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYD 185 (663)
T ss_pred ccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEe
Confidence 4699999999999999987643 12 35899999999999985 45544 66889976666553
No 137
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=95.98 E-value=0.013 Score=56.82 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=46.5
Q ss_pred CcccccchHHHHHHHHHHhhhcCC------CCeEEEEEcchhh--cccHHHHHH-HHHcCCCc---EEEEEeC
Q psy15960 117 TFGTMGVGLGFALAAALYCNHYAP------GKRVVCVQGDSAF--GFSGMELET-LVRYRLPV---ILVILYN 177 (177)
Q Consensus 117 ~~gsmG~~lpaAiGaala~~~~~p------~r~vv~i~GDGsf--~m~~qEL~T-a~r~~lpv---iiiVlNN 177 (177)
+-+.++.-.|.+.|++.|.+.... +.-+|++.|||+| |=.+.|-.. +.-.++|+ ++||.||
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNN 385 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINN 385 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeC
Confidence 346788889999999999876533 3456889999998 444565544 66779997 8889998
No 138
>KOG1182|consensus
Probab=94.99 E-value=0.039 Score=47.50 Aligned_cols=59 Identities=20% Similarity=0.143 Sum_probs=46.4
Q ss_pred ccccchHHHHHHHHHHhhhc-CCCCeEEEEEcchhhccc-H-HHHHHHHHcCCCcEEEEEeC
Q psy15960 119 GTMGVGLGFALAAALYCNHY-APGKRVVCVQGDSAFGFS-G-MELETLVRYRLPVILVILYN 177 (177)
Q Consensus 119 gsmG~~lpaAiGaala~~~~-~p~r~vv~i~GDGsf~m~-~-qEL~Ta~r~~lpviiiVlNN 177 (177)
+.+-..||-|+|++-|.+.. +.++-+|++.|||+..-. . ..+--|+-...|+++|+=||
T Consensus 193 splatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNN 254 (432)
T KOG1182|consen 193 SPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNN 254 (432)
T ss_pred chhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCC
Confidence 34456789999998887643 345889999999998765 2 36777888999999999998
No 139
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=94.62 E-value=0.034 Score=48.54 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=27.2
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc
Q psy15960 119 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS 156 (177)
Q Consensus 119 gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~ 156 (177)
|-+||++.-|.||.+- +|+.-|+|++|||.+--.
T Consensus 140 GELGYaLshA~GA~~D----nPdliv~~vvGDGEaETG 173 (379)
T PF09364_consen 140 GELGYALSHAFGAVFD----NPDLIVACVVGDGEAETG 173 (379)
T ss_dssp SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSH
T ss_pred cchhhHHHHHhhcccC----CCCeEEEEEecCCcccCC
Confidence 6789999999999997 899999999999987553
No 140
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=94.38 E-value=0.28 Score=46.37 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=44.6
Q ss_pred CCCcccccchHHHHHHHHHHhh-----h--cCCCCeEEEEEcchhhcc--cHHHHHHHHHcCCCcEEEEEe
Q psy15960 115 AGTFGTMGVGLGFALAAALYCN-----H--YAPGKRVVCVQGDSAFGF--SGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 115 ~~~~gsmG~~lpaAiGaala~~-----~--~~p~r~vv~i~GDGsf~m--~~qEL~Ta~r~~lpviiiVlN 176 (177)
+....|||-|.-.||=.+.-.+ . ..++++|+||.|||-+-- +...|.-|.|++|.-+|||+|
T Consensus 188 qFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVin 258 (887)
T COG2609 188 QFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVIN 258 (887)
T ss_pred ccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEe
Confidence 3345899988655543322111 1 146899999999998754 456888899999999999998
No 141
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=93.69 E-value=0.14 Score=51.12 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=33.4
Q ss_pred CeEEEEEcch-hhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 142 KRVVCVQGDS-AFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 142 r~vv~i~GDG-sf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+.|+++.||| ++-...+.|.-+.+.+.++++||+||
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~r~~~v~~i~~dn 988 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLASGKDVNVLVMDT 988 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHHcCCCeEEEEECC
Confidence 5799999999 66888999999999999999999998
No 142
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=87.34 E-value=2.7 Score=38.21 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=60.6
Q ss_pred CCHHHHHHHhhhhC--------CCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCC
Q psy15960 70 LNYYAAIHAVQVSI--------PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPG 141 (177)
Q Consensus 70 l~~~~~~~~l~~~l--------~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~ 141 (177)
-.|..++..+.+.+ ....|+++-|++. +.=.|.+||++...|-||+++.-+. + ..+
T Consensus 233 ~e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~--------E~IDpVR~ItN~SSGkmG~alA~aa----~----~~G 296 (475)
T PRK13982 233 AEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTH--------EPIDPVRYIANRSSGKQGFAIAAAA----A----AAG 296 (475)
T ss_pred CCHHHHHHHHHHHHhhccccccCCCEEEEecCCcc--------ccCCcceeeCCCCchHHHHHHHHHH----H----HCC
Confidence 46777777776554 3335777765533 2225889999999999998665443 2 244
Q ss_pred CeEEEEEcchhh----------cccHHHHHHHHHcCCCcEEEEE
Q psy15960 142 KRVVCVQGDSAF----------GFSGMELETLVRYRLPVILVIL 175 (177)
Q Consensus 142 r~vv~i~GDGsf----------~m~~qEL~Ta~r~~lpviiiVl 175 (177)
-.|.++.|-.++ .-|.+|+..++...++.-++|+
T Consensus 297 A~VtlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~ 340 (475)
T PRK13982 297 AEVTLISGPVDLADPQGVKVIHVESARQMLAAVEAALPADIAIF 340 (475)
T ss_pred CcEEEEeCCcCCCCCCCceEEEecCHHHHHHHHHhhCCCCEEEE
Confidence 579999987765 2357899999887776555554
No 143
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=84.27 E-value=2 Score=37.41 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEe
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlN 176 (177)
++.+|+||++| +.|++..+-|++|.+...-|.-+.-..+|+++++.+
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v~ 106 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGISLKQEGISYLAGAELPCVIVNIM 106 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHHHHHHHHHHHHHccCCEEEEEec
Confidence 55677888776 457888888888887777788888888888887764
No 144
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=82.10 E-value=1.1 Score=42.41 Aligned_cols=29 Identities=41% Similarity=0.667 Sum_probs=25.9
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcch
Q psy15960 119 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 151 (177)
Q Consensus 119 gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG 151 (177)
|-+||++.-|.||++= +|+.-+.|++|||
T Consensus 153 GeLGy~l~ha~gAa~d----~Pdli~~~vvGDG 181 (793)
T COG3957 153 GELGYALSHAYGAAFD----NPDLIVACVVGDG 181 (793)
T ss_pred cchhHHHHHHHHhhcC----CCCcEEEEEeccc
Confidence 6678888888888886 8999999999999
No 145
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=80.68 E-value=4.6 Score=30.13 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEE
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIL 175 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVl 175 (177)
+..+|.|.+.+ ..+..+++.+..-++.-...-|..+...++|+++++-
T Consensus 46 A~~~A~g~~~~----~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 46 AVGMADGYARA----TGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred HHHHHHHHHHH----HCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 34456666555 2223344445466677777788888888888877753
No 146
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=79.55 E-value=1.9 Score=35.38 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEe
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlN 176 (177)
++.+++||++| +.|++..+-=.||.+...-|.++.-.++|+++++.|
T Consensus 48 A~~~~~GAs~a------G~ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~~ 94 (230)
T PF01855_consen 48 AMEAAIGASAA------GARAMTATSGPGLNLMAEPLYWAAGTELPIVIVVVQ 94 (230)
T ss_dssp HHHHHHHHHHT------T--EEEEEECCHHHHHCCCHHHHHHTT--EEEEEEE
T ss_pred HHHHHHHHHhc------CCceEEeecCCcccccHhHHHHHHHcCCCEEEEEEE
Confidence 56678888886 345665555555655556688888889998888765
No 147
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=79.04 E-value=4.3 Score=35.88 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEe
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlN 176 (177)
++.+|+||++| +.|+...+-=+||.+...-|..+.-.++|+++.+.|
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~~ 107 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLALMHEMLHWAAGARLPIVMVDVN 107 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEec
Confidence 56678888887 356777776677877778888888889998877753
No 148
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=77.94 E-value=21 Score=27.22 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=47.7
Q ss_pred HHHHHHhhhhCCCCceEEccCc-chhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcc-
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGA-NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD- 150 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~-~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GD- 150 (177)
.++.+...++++++++|+-|+| ....+.+ ++....+-+.+++. ++.+ ..|.. .++-+++++=|.
T Consensus 7 ~~IA~~A~~~I~~~~~Ifld~GtT~~~la~-~L~~~~~ltVvTns--------l~ia--~~l~~---~~~~~vi~~GG~~ 72 (161)
T PF00455_consen 7 RAIARKAASLIEDGDTIFLDSGTTTLELAK-YLPDKKNLTVVTNS--------LPIA--NELSE---NPNIEVILLGGEV 72 (161)
T ss_pred HHHHHHHHHhCCCCCEEEEECchHHHHHHH-HhhcCCceEEEECC--------HHHH--HHHHh---cCceEEEEeCCEE
Confidence 4567777888999999988844 4444444 35444455555543 3333 23331 345566666552
Q ss_pred ---hhhcccHHHHHHHHHcCCCcEEE
Q psy15960 151 ---SAFGFSGMELETLVRYRLPVILV 173 (177)
Q Consensus 151 ---Gsf~m~~qEL~Ta~r~~lpviii 173 (177)
.........+..+.+++.+..++
T Consensus 73 ~~~~~~~~G~~a~~~l~~~~~d~afi 98 (161)
T PF00455_consen 73 NPKSLSFVGPIALEALRQFRFDKAFI 98 (161)
T ss_pred EcCCCcEECchHHHHHHhhccceEEe
Confidence 11222334556666666665443
No 149
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=76.13 E-value=15 Score=32.66 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=51.8
Q ss_pred CCHHHHHHHhhhhCC-----CCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 70 LNYYAAIHAVQVSIP-----DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 70 l~~~~~~~~l~~~l~-----~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
..+..++..+.+.+. ...++++.|++. ..=.|.+|+++...|.||++++-+ ++ ..+-.|
T Consensus 168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~--------E~ID~VR~isN~SSG~~G~aiA~~----l~----~~Ga~V 231 (399)
T PRK05579 168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTR--------EPIDPVRYITNRSSGKMGYALARA----AA----RRGADV 231 (399)
T ss_pred CCHHHHHHHHHHHhhhcccCCCEEEEeCCCcc--------ccccceeeeccCCcchHHHHHHHH----HH----HCCCEE
Confidence 578888888776653 334666665433 112488999988877777755443 33 345578
Q ss_pred EEEEcchhhc----------ccHHHHHHHHHcCCC
Q psy15960 145 VCVQGDSAFG----------FSGMELETLVRYRLP 169 (177)
Q Consensus 145 v~i~GDGsf~----------m~~qEL~Ta~r~~lp 169 (177)
+++.|+.+.. -+.+|+..++...++
T Consensus 232 ~~v~~~~~~~~~~~~~~~dv~~~~~~~~~v~~~~~ 266 (399)
T PRK05579 232 TLVSGPVNLPTPAGVKRIDVESAQEMLDAVLAALP 266 (399)
T ss_pred EEeCCCccccCCCCcEEEccCCHHHHHHHHHHhcC
Confidence 8888876431 235677777654443
No 150
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=74.70 E-value=6.3 Score=34.60 Aligned_cols=47 Identities=11% Similarity=0.226 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEe
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlN 176 (177)
++.+|+||+.| +.|++..+-=+||.+-..-+..++-..+|+++++.+
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~~ 106 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFSLMQENIGYAAMTETPCVIVNVQ 106 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEee
Confidence 44556666665 345555554455555555555555556666666544
No 151
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=74.25 E-value=18 Score=32.03 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=45.3
Q ss_pred CCCHHHHHHHhhhhCC------CCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCC
Q psy15960 69 PLNYYAAIHAVQVSIP------DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 142 (177)
Q Consensus 69 ~l~~~~~~~~l~~~l~------~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r 142 (177)
.-+++.++..+.+.+. ...++++.|++. ..=.|.+|+++...|.||++++-+ ++ ..+-
T Consensus 163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~--------E~iD~VR~itN~SSG~~g~~~a~~----~~----~~Ga 226 (390)
T TIGR00521 163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPTR--------EPIDPVRFISNLSSGKMGLALAEA----AY----KRGA 226 (390)
T ss_pred CCCHHHHHHHHHHHHhhccccCCceEEEecCCcc--------CCCCceeeecCCCcchHHHHHHHH----HH----HCCC
Confidence 4577888887776653 345666665532 112488999988878788755443 33 2456
Q ss_pred eEEEEEcchhhc
Q psy15960 143 RVVCVQGDSAFG 154 (177)
Q Consensus 143 ~vv~i~GDGsf~ 154 (177)
.|+++.|.++..
T Consensus 227 ~V~~~~g~~~~~ 238 (390)
T TIGR00521 227 DVTLITGPVSLL 238 (390)
T ss_pred EEEEeCCCCccC
Confidence 788888887653
No 152
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=74.11 E-value=8.6 Score=29.47 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=18.0
Q ss_pred CCeEEEEEcchhhcccHHHHHHHH-HcCCCcEEEE
Q psy15960 141 GKRVVCVQGDSAFGFSGMELETLV-RYRLPVILVI 174 (177)
Q Consensus 141 ~r~vv~i~GDGsf~m~~qEL~Ta~-r~~lpviiiV 174 (177)
++.++++.+=| +.-.+.-|.++. .+++|+++++
T Consensus 58 ~~~~v~~~~sG-~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 58 KKPAILMQSSG-LGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred CCcEEEEeCCc-HHHHHHHHHHHHHcCCCCEEEEE
Confidence 44555555555 334455666666 6666655554
No 153
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=73.51 E-value=21 Score=27.02 Aligned_cols=60 Identities=25% Similarity=0.210 Sum_probs=34.1
Q ss_pred ccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhc-ccHHHHH-HHHHcCCCcEEEE
Q psy15960 106 NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG-FSGMELE-TLVRYRLPVILVI 174 (177)
Q Consensus 106 ~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~-m~~qEL~-Ta~r~~lpviiiV 174 (177)
...|.+++..+- .- ...++.|.|.++. ..++++... ..|. .....|. .+..+++|+++++
T Consensus 35 ~~~p~r~i~~gI-aE-~~~vg~A~GlA~~-----G~~pi~~~~--~~f~~ra~dqi~~~~a~~~~pv~~~~ 96 (156)
T cd07033 35 KKFPDRFIDVGI-AE-QNMVGIAAGLALH-----GLKPFVSTF--SFFLQRAYDQIRHDVALQNLPVKFVG 96 (156)
T ss_pred HhCCCCeEEeCh-hH-HHHHHHHHHHHHC-----CCeEEEEEC--HHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 345777774321 11 2235566676664 345555555 4443 3445666 6778889988865
No 154
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=71.39 E-value=12 Score=27.43 Aligned_cols=45 Identities=29% Similarity=0.299 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEE-cchhhcccHHHHHHHHHcCCCcEEEE
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQ-GDSAFGFSGMELETLVRYRLPVILVI 174 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~-GDGsf~m~~qEL~Ta~r~~lpviiiV 174 (177)
+..+|.|++.+ . .+.+++.+ |-|.. ....-|.++...++|+++++
T Consensus 47 a~~~A~G~a~~----~-~~~v~~~~~gpg~~-~~~~~l~~a~~~~~Pvl~i~ 92 (154)
T cd06586 47 AAGAAAGYARA----G-GPPVVIVTSGTGLL-NAINGLADAAAEHLPVVFLI 92 (154)
T ss_pred HHHHHHHHHHh----h-CCEEEEEcCCCcHH-HHHHHHHHHHhcCCCEEEEe
Confidence 34456666555 2 24444545 66643 34456667777777776664
No 155
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=68.87 E-value=8.4 Score=30.48 Aligned_cols=67 Identities=21% Similarity=0.233 Sum_probs=40.4
Q ss_pred CceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhc----------c
Q psy15960 86 NCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG----------F 155 (177)
Q Consensus 86 ~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~----------m 155 (177)
..|+++-|++. ..=.|.+|+++..-|-||+.++-+. . ..+-.|+++.|-.++. .
T Consensus 4 k~vlITaG~T~--------E~iD~VR~ItN~SSG~~G~~lA~~~----~----~~Ga~V~li~g~~~~~~p~~~~~i~v~ 67 (185)
T PF04127_consen 4 KKVLITAGPTR--------EPIDPVRFITNRSSGKMGAALAEEA----A----RRGAEVTLIHGPSSLPPPPGVKVIRVE 67 (185)
T ss_dssp -EEEEEESB-E--------EESSSSEEEEES--SHHHHHHHHHH----H----HTT-EEEEEE-TTS----TTEEEEE-S
T ss_pred CEEEEECCCcc--------ccCCCceEecCCCcCHHHHHHHHHH----H----HCCCEEEEEecCccccccccceEEEec
Confidence 45677665543 1124789999998898887664432 2 2455899999998764 4
Q ss_pred cHHHHHHHHHcCC
Q psy15960 156 SGMELETLVRYRL 168 (177)
Q Consensus 156 ~~qEL~Ta~r~~l 168 (177)
|.+|+..+++..+
T Consensus 68 sa~em~~~~~~~~ 80 (185)
T PF04127_consen 68 SAEEMLEAVKELL 80 (185)
T ss_dssp SHHHHHHHHHHHG
T ss_pred chhhhhhhhcccc
Confidence 6778888776544
No 156
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=67.98 E-value=10 Score=33.64 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEe
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlN 176 (177)
++.+++||++| +.|+...+-=.||.+-..-|..++-.++|+++++.|
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~~~~ 114 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLALMVEVLYQASGMRLPIVLNLVN 114 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHHHHhhHHHHHHHhhCCEEEEEec
Confidence 56678888886 345666665556777667888888888998777654
No 157
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=67.69 E-value=57 Score=26.65 Aligned_cols=87 Identities=8% Similarity=-0.004 Sum_probs=46.7
Q ss_pred HHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcc--
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD-- 150 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GD-- 150 (177)
..+.+...++++++++|+-|+|++......++.. .+-+.+++ +++.| ..+.. .|+-.++++-|.
T Consensus 81 ~~IA~~Aa~lI~~gd~Ifld~GtT~~~l~~~L~~-~~ltVvTN--------s~~ia--~~l~~---~~~~~vil~GG~~~ 146 (240)
T PRK10411 81 ADIAREALAWIEEGMVIALDASSTCWYLARQLPD-INIQVFTN--------SHPIC--QELGK---RERIQLISSGGTLE 146 (240)
T ss_pred HHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhhCC-CCeEEEeC--------CHHHH--HHHhc---CCCCEEEEECCEEe
Confidence 4577778888999999999955554333333432 23344433 23222 22331 356566655552
Q ss_pred -hhh-cccHHHHHHHHHcCCCcEEE
Q psy15960 151 -SAF-GFSGMELETLVRYRLPVILV 173 (177)
Q Consensus 151 -Gsf-~m~~qEL~Ta~r~~lpviii 173 (177)
.+. .+....+..+.+++.+..++
T Consensus 147 ~~~~~~~G~~a~~~l~~~~~d~afi 171 (240)
T PRK10411 147 RKYGCYVNPSLISQLKSLEIDLFIF 171 (240)
T ss_pred CCCCceECHHHHHHHHhcCCCEEEE
Confidence 222 22344566666777765544
No 158
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=66.96 E-value=67 Score=26.44 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=46.6
Q ss_pred HHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcc--
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD-- 150 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GD-- 150 (177)
..+.+....+++++++|+-|+|++......++.-..+-+.+++ +++.| ..+.. .|+-.|+++=|.
T Consensus 79 ~~IA~~Aa~~I~~g~tIflD~GtT~~~la~~L~~~~~ltVvTN--------sl~ia--~~l~~---~~~~~villGG~~~ 145 (252)
T PRK10906 79 ERIARKVASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTN--------NLNVA--NTLMA---KEDFRIILAGGELR 145 (252)
T ss_pred HHHHHHHHhhCCCCCEEEEcCcHHHHHHHHHhcCCCCcEEEEC--------cHHHH--HHHhh---CCCCEEEEECCEEe
Confidence 4577777888999999999955554333333432233444433 23322 22321 355566655443
Q ss_pred --hhhcccHHHHHHHHHcCCCcEEE
Q psy15960 151 --SAFGFSGMELETLVRYRLPVILV 173 (177)
Q Consensus 151 --Gsf~m~~qEL~Ta~r~~lpviii 173 (177)
-........+.++.++..+..++
T Consensus 146 ~~~~~~~G~~a~~~l~~~~~d~afi 170 (252)
T PRK10906 146 SRDGGIIGEATLDFISQFRLDFGIL 170 (252)
T ss_pred cCCCccCCHHHHHHHHhccCCEEEE
Confidence 11223344566666776665544
No 159
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=66.85 E-value=11 Score=33.29 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEE
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIL 175 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVl 175 (177)
++.+++||+.| +.|+...+-=.|+.+...-|..+.-.++|+++++.
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~lm~E~l~~aag~~lP~V~vv~ 107 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLALMHEVLFIAAGMRLPIVMAIG 107 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHHHHhhHHHHHHHccCCEEEEEC
Confidence 56678888887 34676666666677777788889999999888774
No 160
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=66.13 E-value=60 Score=26.63 Aligned_cols=87 Identities=21% Similarity=0.087 Sum_probs=46.0
Q ss_pred HHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcc-
Q psy15960 73 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD- 150 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GD- 150 (177)
.++.+...++++++++|+.| |++...++++ +.-..+-+.+++ +++.+ ..+.. .|+-.++++=|.
T Consensus 80 ~~IA~~Aa~lI~~g~tIflD~GtT~~~la~~-L~~~~~ltvvTn--------sl~i~--~~l~~---~~~~~villGG~~ 145 (252)
T PRK10681 80 RRAAQLAATLVEPNQTLFFDCGTTTPWIIEA-IDNELPFTAVCY--------SLNTF--LALQE---KPHCRAILCGGEF 145 (252)
T ss_pred HHHHHHHHhhcCCCCEEEEECCccHHHHHHh-cCCCCCeEEEEC--------CHHHH--HHHhh---CCCCEEEEECcEE
Confidence 45777778889999999888 5555455543 432234455543 33333 23431 355455544333
Q ss_pred --hhhcc-cHHHHHHHHHcCCCcEEE
Q psy15960 151 --SAFGF-SGMELETLVRYRLPVILV 173 (177)
Q Consensus 151 --Gsf~m-~~qEL~Ta~r~~lpviii 173 (177)
++..+ ....+..+.+++.+..++
T Consensus 146 ~~~~~~~~G~~~~~~l~~~~~D~afi 171 (252)
T PRK10681 146 HASNAIFKPLDFQQTLDNICPDIAFY 171 (252)
T ss_pred ecCcceeeCHHHHHHHHhhCCCEEEE
Confidence 11112 223455666777665554
No 161
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=65.32 E-value=13 Score=32.67 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEe
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlN 176 (177)
++.+|+||++| +.|++..+-=+||.+...-+..++-..+|+++++.+
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~lm~E~~~~a~~~e~P~V~~~~~ 105 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGISLKAEQIGLGFIAEIPLVIVNVM 105 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHHHHhhHHHHHHhccCCEEEEEec
Confidence 45567777776 334555554455655556666677777787776654
No 162
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=62.76 E-value=44 Score=26.85 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 66 ESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
.+..+....+.+.+++.-.+.++++.||.-.. . .|.+ . ... ..-..+ .++.|++
T Consensus 86 ~~~~i~~~~i~~~~~~l~~~~D~VlVEGaGgl-~--------~p~~---~----~~~-----~~d~~~-----~~~~pvi 139 (231)
T PRK12374 86 HSCPINYTLMSNGLANLSEKVDHVVVEGTGGW-R--------SLMN---D----LRP-----LSEWVV-----QEQLPVL 139 (231)
T ss_pred cCCcCCHHHHHHHHHHHHhhCCEEEEECCCCc-c--------eecc---C----ccc-----HHHHHH-----HhCCCEE
Confidence 34567778888888764466678888843211 0 0100 0 000 001112 1456777
Q ss_pred EEE--cchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 146 CVQ--GDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 146 ~i~--GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
+++ +.|+..++.-.+..+.++++++.-+|+|.
T Consensus 140 lV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~ 173 (231)
T PRK12374 140 MVVGIQEGCINHALLTAQAIANDGLPLIGWVANR 173 (231)
T ss_pred EEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 777 55555444445555666778888888774
No 163
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=59.16 E-value=30 Score=32.42 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=45.9
Q ss_pred HHHHHhhhhCCC-CceEEcc---CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 74 AAIHAVQVSIPD-NCIIVGE---GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 74 ~~~~~l~~~l~~-~~iiv~d---g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
.+-+.|.+.... ++|++.+ ++.. ... .+.-..|.+|+..+- +=...++.|.|.+++ .-+|++.+
T Consensus 315 a~~~~L~~~~~~d~~iv~i~ad~~~~~-~~~--~f~~~fP~R~~d~GI--aEq~~vg~AaGlA~~-----G~~Pvv~~-- 382 (617)
T TIGR00204 315 IFSDTLCELAKKDNKIVGITPAMPEGS-GLD--KFSRKFPDRYFDVAI--AEQHAVTFAAGMAIE-----GYKPFVAI-- 382 (617)
T ss_pred HHHHHHHHHHhhCcCEEEEECCccCCc-ChH--HHHHHCccccccCCc--cHHHHHHHHHHHHHC-----CCEEEEEe--
Confidence 445556665543 3455533 1122 121 133445888774321 112345667776654 34555555
Q ss_pred chhhcccH--HHHHHHHHcCCCcEEEE
Q psy15960 150 DSAFGFSG--MELETLVRYRLPVILVI 174 (177)
Q Consensus 150 DGsf~m~~--qEL~Ta~r~~lpviiiV 174 (177)
=..|..-+ |=...++..++|+++++
T Consensus 383 ~a~Fl~ra~dQi~~~~a~~~lpV~i~~ 409 (617)
T TIGR00204 383 YSTFLQRAYDQVVHDVCIQKLPVLFAI 409 (617)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 56676543 22345677899988765
No 164
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=59.14 E-value=14 Score=34.12 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEe
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlN 176 (177)
++.+++||++| +.|++..+-=.||.+...-|+.+.-..+|+++++.+
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~~~ 295 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFALMTEALGLAGMTETPLVIVDVQ 295 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChhHhHHHHhHHHhccCCEEEEEcc
Confidence 56677777776 345655555555666556677777777887777654
No 165
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=57.46 E-value=22 Score=30.51 Aligned_cols=79 Identities=20% Similarity=0.189 Sum_probs=44.8
Q ss_pred CceEE--ccCcchhHHHHHhhhccCCCceecCCCcccccc-hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcc-cH--HH
Q psy15960 86 NCIIV--GEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV-GLGFALAAALYCNHYAPGKRVVCVQGDSAFGF-SG--ME 159 (177)
Q Consensus 86 ~~iiv--~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~-~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m-~~--qE 159 (177)
++||+ +|.+++.... ++.-..|.+|++- |-+=. .++.|-|.+++ -.+|. +++=+.|.+ -. |-
T Consensus 25 ~diVvl~ADl~~St~~~--~f~~~fPdR~~Nv---GIaEQ~mvg~AAGLA~~-----Gk~Pf--v~tfa~F~s~Ra~EQi 92 (312)
T COG3958 25 SDIVVLDADLSSSTKTG--YFAKEFPDRFFNV---GIAEQDMVGTAAGLALA-----GKKPF--VSTFAAFLSRRAWEQI 92 (312)
T ss_pred CCEEEEecccccccchh--HHHHhCchhheec---chHHHHHHHHHHHHHhc-----CCCce--eechHHHHHHHHHHHH
Confidence 34444 5633333332 3556788888742 22212 35666676665 23343 456678888 23 34
Q ss_pred HHHHHHcCCCcEEEEEe
Q psy15960 160 LETLVRYRLPVILVILY 176 (177)
Q Consensus 160 L~Ta~r~~lpviiiVlN 176 (177)
-.+..+.++|+.||..+
T Consensus 93 r~~iay~~lnVKiv~t~ 109 (312)
T COG3958 93 RNSIAYNNLNVKIVATH 109 (312)
T ss_pred HHHhhhccCCeEEEEec
Confidence 45567889999998754
No 166
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=56.54 E-value=80 Score=23.97 Aligned_cols=59 Identities=14% Similarity=-0.009 Sum_probs=34.9
Q ss_pred CCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcch-hhcccHHHHHHHHHcCCCcEEEEE
Q psy15960 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVIL 175 (177)
Q Consensus 109 p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG-sf~m~~qEL~Ta~r~~lpviiiVl 175 (177)
.-+++....-.+ +..+|-|.+.+ .+|+.++++-=| ++.-.+.-|..|...++|+++|.-
T Consensus 39 ~i~~i~~~~E~~---A~~~A~g~ar~-----~g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 39 GIRFIPVRHEQG---AAFMADGYARA-----TGRPGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp TSEEEE-SSHHH---HHHHHHHHHHH-----HSSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceeeecccCcch---hHHHHHHHHHh-----hccceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 345554443332 33356665554 356666666444 455567788889999999888764
No 167
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=55.24 E-value=19 Score=31.45 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHH---HHcCCCcEEEE
Q psy15960 122 GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL---VRYRLPVILVI 174 (177)
Q Consensus 122 G~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta---~r~~lpviiiV 174 (177)
|-+++.|.|+.+| .-++++|.+ =-.|+.-+++-|.+. .-|++|++++|
T Consensus 36 ~~av~iaaG~~la----tG~~~~v~m-QnSGlGn~vN~l~SL~~~~~y~iP~l~~i 86 (361)
T TIGR03297 36 GAAVGLAAGAYLA----TGKRAAVYM-QNSGLGNAVNPLTSLADTEVYDIPLLLIV 86 (361)
T ss_pred hHHHHHHHHHHHh----cCCccEEEE-ecCchhhhhhHHHhhccccccCcCeeEEE
Confidence 5678888888887 234445544 444465566666555 56899998887
No 168
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=54.77 E-value=36 Score=25.39 Aligned_cols=11 Identities=18% Similarity=0.139 Sum_probs=5.6
Q ss_pred CeEEEEEcchh
Q psy15960 142 KRVVCVQGDSA 152 (177)
Q Consensus 142 r~vv~i~GDGs 152 (177)
-|+++++|+-+
T Consensus 91 ~P~v~i~g~~~ 101 (160)
T cd07034 91 LPLVIVVAQRP 101 (160)
T ss_pred CCEEEEEeeCC
Confidence 45555555443
No 169
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=54.29 E-value=42 Score=28.16 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=27.0
Q ss_pred eEEEEEcchhhccc--HH--HHHHHHHcCCCcEEEEEeC
Q psy15960 143 RVVCVQGDSAFGFS--GM--ELETLVRYRLPVILVILYN 177 (177)
Q Consensus 143 ~vv~i~GDGsf~m~--~q--EL~Ta~r~~lpviiiVlNN 177 (177)
++++++-||....+ .+ .+..+.+.++-+++|+++|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~ 204 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDN 204 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcC
Confidence 89999999995543 33 3566778899999998865
No 170
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=54.24 E-value=46 Score=31.89 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=50.3
Q ss_pred CCHHH-HHHHhhhhCCCC-ceEEc--cCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEE
Q psy15960 70 LNYYA-AIHAVQVSIPDN-CIIVG--EGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 145 (177)
Q Consensus 70 l~~~~-~~~~l~~~l~~~-~iiv~--dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv 145 (177)
.+... +.+.|.+....| .|++. |....... ..+.-..|.+|+.-+- +=...++.|.|.|+. --+|++
T Consensus 381 ~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl--~~f~~~fPdRffDvGI--AEQhaVt~AAGLA~~-----G~kPvv 451 (701)
T PLN02225 381 RTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASL--ITFQERFPDRFFNVGM--AEQHAVTFSAGLSSG-----GLKPFC 451 (701)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccH--HHHHHHccccccccCc--cHHHHHHHHHHHHHC-----CCEEEE
Confidence 44443 445566665443 44443 42111112 2244456888874321 112345666666654 457888
Q ss_pred EEEcchhhcccH--HHHHHHHHcCCCcEEEE
Q psy15960 146 CVQGDSAFGFSG--MELETLVRYRLPVILVI 174 (177)
Q Consensus 146 ~i~GDGsf~m~~--qEL~Ta~r~~lpviiiV 174 (177)
++.. .|+.-+ |=...++.+++||++++
T Consensus 452 ~iys--tFlqRAyDQI~~Dval~~lpV~~vi 480 (701)
T PLN02225 452 IIPS--AFLQRAYDQVVHDVDRQRKAVRFVI 480 (701)
T ss_pred Eeeh--hHHHHHHHHHHHHHHhhcCCceEEE
Confidence 8884 676532 33444678889988775
No 171
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=53.81 E-value=66 Score=28.01 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=46.5
Q ss_pred CCCHHHHHH-HhhhhCCCC-ceEE--ccCcc---hhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCC
Q psy15960 69 PLNYYAAIH-AVQVSIPDN-CIIV--GEGAN---TMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPG 141 (177)
Q Consensus 69 ~l~~~~~~~-~l~~~l~~~-~iiv--~dg~~---~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~ 141 (177)
.++....+. .|.+.+.+| ++++ .|.+. .+.....++.-..|.+|+..+- +=...++.|.|.+++ -.
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GI--AEq~~vg~AaGlA~~-----G~ 98 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPI--TEAGFTGIGVGAAYA-----GL 98 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECch--hHHHHHHHHHHHHHC-----CC
Confidence 355554444 666666443 3443 34222 1222222233334888875331 113456677777765 34
Q ss_pred CeEEEEEcchhhcc-cHHHH-HHHHHcC--------CCcEEEE
Q psy15960 142 KRVVCVQGDSAFGF-SGMEL-ETLVRYR--------LPVILVI 174 (177)
Q Consensus 142 r~vv~i~GDGsf~m-~~qEL-~Ta~r~~--------lpviiiV 174 (177)
||++.+..= .|.+ ....| ..+..++ +|++++.
T Consensus 99 ~P~v~~~~~-~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~ 140 (356)
T PLN02683 99 KPVVEFMTF-NFSMQAIDHIINSAAKTNYMSAGQISVPIVFRG 140 (356)
T ss_pred EEEEEEehh-hHHHHHHHHHHHHHHHhccccCCCccCCEEEEE
Confidence 566554321 2332 22233 3445444 8887764
No 172
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=53.45 E-value=1.3e+02 Score=24.96 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=45.1
Q ss_pred HHHHHHhhhhCCCCceEEccCcchh-HHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcch
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGANTM-DIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 151 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~~~~-~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG 151 (177)
..+.+...+++++++.|+-|+|++. .+..+ +.-..+-+.+++. ++.+ ..+.. .|+-.++++-|.=
T Consensus 94 ~~IA~~Aa~~I~dgd~Ifld~GtT~~~la~~-L~~~~~ltVvTns--------l~ia--~~l~~---~~~~~v~llGG~~ 159 (269)
T PRK09802 94 RSVAKAAVELIQPGHRVILDSGTTTFEIARL-MRKHTDVIAMTNG--------MNVA--NALLE---AEGVELLMTGGHL 159 (269)
T ss_pred HHHHHHHHhhCCCCCEEEECCchHHHHHHHh-cCcCCCeEEEeCC--------HHHH--HHHHh---CCCCEEEEECCEE
Confidence 4577778888999999999955544 44433 4322334455432 3322 23331 3555566554432
Q ss_pred ---hhcc-cHHHHHHHHHcCCCcEEE
Q psy15960 152 ---AFGF-SGMELETLVRYRLPVILV 173 (177)
Q Consensus 152 ---sf~m-~~qEL~Ta~r~~lpviii 173 (177)
+..+ ....+..+.+++.+.-++
T Consensus 160 ~~~~~~~~G~~a~~~l~~~~~d~afi 185 (269)
T PRK09802 160 RRQSQSFYGDQAEQSLQNYHFDMLFL 185 (269)
T ss_pred ecCCCceECHHHHHHHHhccCCEEEE
Confidence 2222 233455555666664443
No 173
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=53.19 E-value=32 Score=29.27 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=33.1
Q ss_pred cccccchHHHHHHHHHHhhh---cCCCCeEEEEEcchhhccc--HHH----------HHHHHHcCCCcEEEEEe
Q psy15960 118 FGTMGVGLGFALAAALYCNH---YAPGKRVVCVQGDSAFGFS--GME----------LETLVRYRLPVILVILY 176 (177)
Q Consensus 118 ~gsmG~~lpaAiGaala~~~---~~p~r~vv~i~GDGsf~m~--~qE----------L~Ta~r~~lpviiiVlN 176 (177)
+.-||.+++...|.++.... ...+.|+|++.--||.-|. .-. |.-..+.++|.+.++-|
T Consensus 131 f~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~ 204 (294)
T COG0777 131 FAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTD 204 (294)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 34444455555555553211 1346799999999988763 112 22223447887776543
No 174
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=49.63 E-value=59 Score=30.99 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=47.3
Q ss_pred HHHHHhhhhCCCC-ceEE--cc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 74 AAIHAVQVSIPDN-CIIV--GE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 74 ~~~~~l~~~l~~~-~iiv--~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
.+.++|.+.+..| +|++ .| ++.+. +. .+.-..|.+|+..+- +=...++.|.|.++. --+|++++.
T Consensus 361 a~~~aL~~~a~~d~~vv~ita~m~g~~g-l~--~f~~~fP~R~fdvGI--AEq~~vg~AaGLA~~-----G~kPvv~~f- 429 (677)
T PLN02582 361 YFAEALIAEAEVDKDVVAIHAAMGGGTG-LN--LFARRFPTRCFDVGI--AEQHAVTFAAGLACE-----GLKPFCAIY- 429 (677)
T ss_pred HHHHHHHHHHccCCCEEEEeCCCCCccc-hH--HHHHHcCccccccCc--CHHHHHHHHHHHHHC-----CCeEEEEec-
Confidence 4556666666443 4443 24 33322 22 144456888774321 112345666666664 356777764
Q ss_pred chhhcccH--HHHHHHHHcCCCcEEEE
Q psy15960 150 DSAFGFSG--MELETLVRYRLPVILVI 174 (177)
Q Consensus 150 DGsf~m~~--qEL~Ta~r~~lpviiiV 174 (177)
..|+.-+ |-+..++.+++|+++++
T Consensus 430 -s~Fl~RA~DQI~~dval~~lpVv~v~ 455 (677)
T PLN02582 430 -SSFLQRGYDQVVHDVDLQKLPVRFAM 455 (677)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4565433 23455577899988765
No 175
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=48.54 E-value=43 Score=27.37 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy15960 67 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 146 (177)
Q Consensus 67 ~~~l~~~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~ 146 (177)
...|....+...+.+..++.+.++.||.-- ++ .++.....+ +-++.+ -+-|||+
T Consensus 88 g~~I~~~~l~~~l~~l~~~~d~vlVEGAGG-l~----vPl~~~~~~------------------~D~~~~---~~lpvIL 141 (223)
T COG0132 88 GRTIDLEKLSQGLRQLLKKYDLVLVEGAGG-LL----VPLTEEYTF------------------ADLAVQ---LQLPVIL 141 (223)
T ss_pred CCcccHHHHHHHHHhhhcccCEEEEeCCCc-ee----eecCCcccH------------------HHHHHH---cCCCEEE
Confidence 445889999999988888878888783211 11 122222111 111211 1246777
Q ss_pred EEc--chhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 147 VQG--DSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 147 i~G--DGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
++| -|+..+++=-+..+.+.++|+.-+|+|.
T Consensus 142 V~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~ 174 (223)
T COG0132 142 VVGIKLGTINHTLLTVEALRARGLPLAGWVANG 174 (223)
T ss_pred EecCCccHHHHHHHHHHHHHHCCCCEEEEEEcc
Confidence 764 5788888878888888899988888884
No 176
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=46.07 E-value=38 Score=28.29 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=28.5
Q ss_pred CCCCeEEEEEcchhh--cccHHHHHHHHHcCCCcEEEEE
Q psy15960 139 APGKRVVCVQGDSAF--GFSGMELETLVRYRLPVILVIL 175 (177)
Q Consensus 139 ~p~r~vv~i~GDGsf--~m~~qEL~Ta~r~~lpviiiVl 175 (177)
+|++++|+++=|.+. ..+.+-|..+.+|+++.++||.
T Consensus 81 ~~~~k~VaLTFDdg~~~~~t~~iL~iLkk~~vkATFFv~ 119 (268)
T TIGR02873 81 HPEKPMVALLINVAWGNEYLPEILQILKKHDVKATFFLE 119 (268)
T ss_pred CCCCCEEEEEEeCCCCcchHHHHHHHHHHCCCCEEEEee
Confidence 577888888733322 4667888999999999999985
No 177
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=45.77 E-value=1.6e+02 Score=25.55 Aligned_cols=86 Identities=8% Similarity=-0.023 Sum_probs=38.6
Q ss_pred HHHHHHhhhhCCCCceEEccCc-chhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcch
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGA-NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 151 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~-~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG 151 (177)
..+-+.+.+.+..+.++++.|+ .........+.+..+...+.+.. .| ++...+... ..-++|.+=+.+.
T Consensus 34 ~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~----t~--~~~~~~~~~----~G~~~v~vd~d~~ 103 (376)
T TIGR02379 34 RRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSY----TF--VSTANAFVL----RGAKIVFVDIRPD 103 (376)
T ss_pred HHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCC----Cc--HHHHHHHHH----cCCEEEEEecCCC
Confidence 4555666666666666666533 33333222222333344544321 22 122211111 1122333333435
Q ss_pred hhcccHHHHHHHHHcCC
Q psy15960 152 AFGFSGMELETLVRYRL 168 (177)
Q Consensus 152 sf~m~~qEL~Ta~r~~l 168 (177)
++.+...+|..++..+.
T Consensus 104 ~~~~d~~~le~~i~~~t 120 (376)
T TIGR02379 104 TMNIDETLIESAITHRT 120 (376)
T ss_pred cCCCCHHHHHHhcCcCc
Confidence 57777777777665443
No 178
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=43.59 E-value=56 Score=30.98 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=45.5
Q ss_pred HHHHHhhhhCCC-CceEE--cc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 74 AAIHAVQVSIPD-NCIIV--GE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 74 ~~~~~l~~~l~~-~~iiv--~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
.+.++|.+.+.. ++|++ .| ++... . ..+.-..|.+++..+- . =-..++.|.|+++. --||++++
T Consensus 362 af~~aL~e~a~~D~~Iv~l~adm~ggt~-~--~~f~~~fPdR~fdvGI-A-Eq~~Vg~AaGLA~~-----G~rPvv~~-- 429 (641)
T PLN02234 362 CFVEALIAEAEADKDIVAIHAAMGGGTM-L--NLFESRFPTRCFDVGI-A-EQHAVTFAAGLACE-----GLKPFCTI-- 429 (641)
T ss_pred HHHHHHHHHHHHCcCEEEEECCCCCCcc-h--HHHHHHccccccCCCc-C-HHHHHHHHHHHHHC-----CCeEEEEe--
Confidence 355556655543 34443 35 33321 2 2244345888874321 1 12245666666664 34566665
Q ss_pred chhhcccH--HHHHHHHHcCCCcEEEE
Q psy15960 150 DSAFGFSG--MELETLVRYRLPVILVI 174 (177)
Q Consensus 150 DGsf~m~~--qEL~Ta~r~~lpviiiV 174 (177)
=..|+.-+ |=...+...++|+++++
T Consensus 430 fs~Fl~RA~DQI~~dva~~~lpV~~v~ 456 (641)
T PLN02234 430 YSSFMQRAYDQVVHDVDLQKLPVRFAI 456 (641)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 34565432 22334567889987765
No 179
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=43.54 E-value=1.2e+02 Score=27.51 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=30.4
Q ss_pred CCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc-H-HHHHHHH--------HcCCCcEEEEE
Q psy15960 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-G-MELETLV--------RYRLPVILVIL 175 (177)
Q Consensus 109 p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~-~-qEL~Ta~--------r~~lpviiiVl 175 (177)
|.+|+..+- . =...++.|.|++++ --||++.+..= .|.+- . |=...+. +.++|++++..
T Consensus 188 p~R~id~gI-a-Eq~~vg~AaGlA~~-----G~rPiv~~~~~-~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~ 256 (464)
T PRK11892 188 ARRVIDTPI-T-EHGFAGIGVGAAFA-----GLKPIVEFMTF-NFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGP 256 (464)
T ss_pred ccceeecCc-c-HHHHHHHHHHHHhC-----CCEEEEEEehH-HHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEec
Confidence 777774321 1 12245667777775 34666655421 12222 2 2223344 67889887643
No 180
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=43.44 E-value=87 Score=26.77 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=48.8
Q ss_pred HHHHHHhhhhCCCCceEEcc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcch
Q psy15960 73 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 151 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDG 151 (177)
..+=+.+.+++...-.+.+. |+++...+...+.+..+..++.+.. +.++.+-+.+. ..-++|++=+--.
T Consensus 28 ~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~------t~~~~~~ai~~----~G~~pv~~Di~~~ 97 (363)
T PF01041_consen 28 EEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAY------TFPATASAILW----AGAEPVFVDIDPE 97 (363)
T ss_dssp HHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESS------S-THHHHHHHH----TT-EEEEE-BETT
T ss_pred HHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCC------cchHHHHHHHH----hccEEEEEeccCC
Confidence 45666777778766555544 7777666665566666666665532 22223333332 1122333333336
Q ss_pred hhcccHHHHHHHHHcCCCcEEE
Q psy15960 152 AFGFSGMELETLVRYRLPVILV 173 (177)
Q Consensus 152 sf~m~~qEL~Ta~r~~lpviii 173 (177)
+|.+...++..++..+...+++
T Consensus 98 ~~~id~~~~~~~i~~~t~ai~~ 119 (363)
T PF01041_consen 98 TLNIDPEALEKAITPKTKAILV 119 (363)
T ss_dssp TSSB-HHHHHHHHHTTEEEEEE
T ss_pred cCCcCHHHHHHHhccCccEEEE
Confidence 7777777777776655544443
No 181
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=43.06 E-value=80 Score=25.55 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchh
Q psy15960 108 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 152 (177)
Q Consensus 108 ~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGs 152 (177)
.|.+|+++...|.||.++.- +++ ..+-+|+++.|+..
T Consensus 15 D~VR~itN~SSG~iG~aLA~----~L~----~~G~~V~li~r~~~ 51 (229)
T PRK06732 15 DSVRGITNHSTGQLGKIIAE----TFL----AAGHEVTLVTTKTA 51 (229)
T ss_pred CCceeecCccchHHHHHHHH----HHH----hCCCEEEEEECccc
Confidence 37889988877777765543 333 24457888877644
No 182
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=42.20 E-value=75 Score=25.65 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=21.3
Q ss_pred CCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcc
Q psy15960 108 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 150 (177)
Q Consensus 108 ~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GD 150 (177)
.|.+|+++...|.||. |+.-+++ ..+-.|+++.++
T Consensus 14 D~VR~itN~SSGgIG~----AIA~~la----~~Ga~Vvlv~~~ 48 (227)
T TIGR02114 14 DSVRSITNHSTGHLGK----IITETFL----SAGHEVTLVTTK 48 (227)
T ss_pred CCceeecCCcccHHHH----HHHHHHH----HCCCEEEEEcCh
Confidence 3788998877676665 4444444 344567766544
No 183
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=41.82 E-value=1.9e+02 Score=23.59 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=20.7
Q ss_pred HHHHHHhhhhCCCCceEEccCcch-hHHHH
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGANT-MDIGR 101 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~~~-~~~~~ 101 (177)
..+.+....+++++++|+-|+|++ ..+..
T Consensus 81 ~~IA~~Aa~~I~~g~~Ifld~GsT~~~la~ 110 (251)
T PRK13509 81 VRIAKAASQLCNPGESVVINCGSTAFLLGR 110 (251)
T ss_pred HHHHHHHHHhCCCCCEEEECCcHHHHHHHH
Confidence 457777788899999999995544 44444
No 184
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=41.73 E-value=43 Score=32.59 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHhhhhCCC---------CceEEcc
Q psy15960 66 ESVPLNYYAAIHAVQVSIPD---------NCIIVGE 92 (177)
Q Consensus 66 ~~~~l~~~~~~~~l~~~l~~---------~~iiv~d 92 (177)
+...++...+.+.+++.+.. .+.++.|
T Consensus 156 eg~~i~~~~i~~~~~~~l~~~~~~~~~~~~d~vlVE 191 (817)
T PLN02974 156 EGRGVSDDEVLEAVNRSLREVGANESGGGRVLALVE 191 (817)
T ss_pred hCCCCCHHHHHHHHHHHHHhhhcccccccCCeEEEE
Confidence 34568888888887765542 3566666
No 185
>KOG1257|consensus
Probab=41.53 E-value=2.1e+02 Score=26.70 Aligned_cols=92 Identities=22% Similarity=0.187 Sum_probs=55.8
Q ss_pred HHHHHHhhhhCCCCceEE-cc-CcchhHHHHHhhhccCCCc-eecCCCcccccchHHHHHHHHHHhhhcCC-CCeEEEEE
Q psy15960 73 YAAIHAVQVSIPDNCIIV-GE-GANTMDIGRSLLLNNLPRH-RLDAGTFGTMGVGLGFALAAALYCNHYAP-GKRVVCVQ 148 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv-~d-g~~~~~~~~~~~~~~~p~~-~i~~~~~gsmG~~lpaAiGaala~~~~~p-~r~vv~i~ 148 (177)
+.++.++.+...++++|- -| +.+. +.+ ++..++... .++..-.|+-+.++++-+|+.=..+ .| ...+++|.
T Consensus 242 dEFm~Av~~~yG~~~lIqFEDF~~~n--Afr-lL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~--~~lsd~~ilf~ 316 (582)
T KOG1257|consen 242 DEFMEAVVQRYGPNTLIQFEDFANHN--AFR-LLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITG--KPLSDHVILFL 316 (582)
T ss_pred HHHHHHHHHHhCcceEEEehhccchh--HHH-HHHHhccccceecccccchhHHHHHHHHHHHHHhC--CccccceEEEe
Confidence 567888888888888774 56 5532 222 344444443 3333344555556666665533211 11 23689999
Q ss_pred cchhhcccHHHHHH--HHHcCCC
Q psy15960 149 GDSAFGFSGMELET--LVRYRLP 169 (177)
Q Consensus 149 GDGsf~m~~qEL~T--a~r~~lp 169 (177)
|-|+..+.+.+|.. +++++++
T Consensus 317 GAG~A~~GIA~l~v~~m~~~Gl~ 339 (582)
T KOG1257|consen 317 GAGEAALGIANLIVMAMVKEGLS 339 (582)
T ss_pred cCchHHhhHHHHHHHHHHHcCCC
Confidence 99999999876554 5677776
No 186
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=40.60 E-value=58 Score=29.04 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=22.3
Q ss_pred eEEEEE--cchhhcccHHHHHHHHHc----CCCcEEEEEeC
Q psy15960 143 RVVCVQ--GDSAFGFSGMELETLVRY----RLPVILVILYN 177 (177)
Q Consensus 143 ~vv~i~--GDGsf~m~~qEL~Ta~r~----~lpviiiVlNN 177 (177)
+++-+. .+.+|+.++.++..+.+. +..+..++++|
T Consensus 168 ~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~n 208 (447)
T PLN02607 168 KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITN 208 (447)
T ss_pred EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeC
Confidence 444443 345688898888776654 56666666665
No 187
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=38.22 E-value=2.2e+02 Score=23.29 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=20.3
Q ss_pred HHHHHHhhhhCCCCceEEccCcch-hHHHH
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGANT-MDIGR 101 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~~~-~~~~~ 101 (177)
..+.+....+++++++|+-|+|++ ..+..
T Consensus 79 ~~IA~~Aa~~I~~g~tIfld~GtT~~~la~ 108 (256)
T PRK10434 79 ELIAEAAVSLIHDGDSIILDAGSTVLQMVP 108 (256)
T ss_pred HHHHHHHHhhCCCCCEEEEcCcHHHHHHHH
Confidence 456677778889999999895554 34443
No 188
>KOG3128|consensus
Probab=38.12 E-value=11 Score=31.90 Aligned_cols=15 Identities=7% Similarity=0.062 Sum_probs=10.5
Q ss_pred CCCeEEEEEcchhhc
Q psy15960 140 PGKRVVCVQGDSAFG 154 (177)
Q Consensus 140 p~r~vv~i~GDGsf~ 154 (177)
-+++-|++++|-..-
T Consensus 271 md~ydIvL~~D~tld 285 (298)
T KOG3128|consen 271 MDSYDIVLVHDETLD 285 (298)
T ss_pred HhhcceEEecCcccc
Confidence 467778888886543
No 189
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=37.85 E-value=1.2e+02 Score=23.88 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=17.3
Q ss_pred CCCHHHHHHHhhhhCCCCceEEccCc
Q psy15960 69 PLNYYAAIHAVQVSIPDNCIIVGEGA 94 (177)
Q Consensus 69 ~l~~~~~~~~l~~~l~~~~iiv~dg~ 94 (177)
.+....+.+.+.+.-.+-++++.||.
T Consensus 87 ~~~~~~i~~~~~~l~~~~D~viIEg~ 112 (222)
T PRK00090 87 AIDLEKISAALRRLAQQYDLVLVEGA 112 (222)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEECC
Confidence 45667777777654455678888843
No 190
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=36.71 E-value=83 Score=29.14 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=43.7
Q ss_pred HHHHHhhhhCCCC-ceEE--cc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 74 AAIHAVQVSIPDN-CIIV--GE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 74 ~~~~~l~~~l~~~-~iiv--~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
.+.+.|.+.+..+ .+++ .| .++. .... +.-..|.+|+..+- .- ...++.|.|.++. .-+|++..
T Consensus 284 ~~~~~L~~~~~~~~~vv~~~adl~~~~-~~~~--f~~~~p~R~i~~GI-aE-~~mvg~A~GlA~~-----G~~p~~~~-- 351 (580)
T PRK05444 284 VFGETLCELAEKDPKIVAITAAMPEGT-GLVK--FSKRFPDRYFDVGI-AE-QHAVTFAAGLATE-----GLKPVVAI-- 351 (580)
T ss_pred HHHHHHHHHHhhCCCEEEEECCcCCCC-CHHH--HHHHhhhhccCCCh-HH-HHHHHHHHHHHHC-----CCeeEEEe--
Confidence 4455566655433 4444 34 2222 2222 33344777764221 11 1234556666664 34455544
Q ss_pred chhhcccHHH-HHH-HHHcCCCcEEEE
Q psy15960 150 DSAFGFSGME-LET-LVRYRLPVILVI 174 (177)
Q Consensus 150 DGsf~m~~qE-L~T-a~r~~lpviiiV 174 (177)
=..|..-+-| +.. ++..++|++++.
T Consensus 352 f~~F~~ra~dQi~~~~a~~~~pv~~v~ 378 (580)
T PRK05444 352 YSTFLQRAYDQVIHDVALQNLPVTFAI 378 (580)
T ss_pred eHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 4456543322 434 677889988875
No 191
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=36.24 E-value=1.1e+02 Score=22.16 Aligned_cols=35 Identities=17% Similarity=0.035 Sum_probs=25.2
Q ss_pred CeEEEEEcchhhcc---cHHHHHHHHHcCCCcEEEEEe
Q psy15960 142 KRVVCVQGDSAFGF---SGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 142 r~vv~i~GDGsf~m---~~qEL~Ta~r~~lpviiiVlN 176 (177)
+++++++.||.-.. ..+.+..+.+.++.+..|.+.
T Consensus 106 ~~~iviitDg~~~~~~~~~~~~~~~~~~~i~i~~i~~~ 143 (177)
T smart00327 106 PKVLILITDGESNDGGDLLKAAKELKRSGVKVFVVGVG 143 (177)
T ss_pred CeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcc
Confidence 56899999997763 455777777777777666553
No 192
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=35.21 E-value=61 Score=26.25 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=21.8
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhccc
Q psy15960 119 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS 156 (177)
Q Consensus 119 gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~ 156 (177)
-+||.+|..+... ++.......|+||-+.|||-=.-.
T Consensus 95 Taig~Al~~a~~l-l~~~~~~~~RrVIDvSGDG~~N~G 131 (205)
T PF06707_consen 95 TAIGSALDFAAAL-LAQNPFECWRRVIDVSGDGPNNQG 131 (205)
T ss_pred chHHHHHHHHHHH-HHhCCCCCceEEEEECCCCCCCCC
Confidence 5666666554432 332111246899999999964443
No 193
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=35.01 E-value=1.5e+02 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=17.5
Q ss_pred eEEEEEcchhhcccHHHHHHHHHcCCCcEEE
Q psy15960 143 RVVCVQGDSAFGFSGMELETLVRYRLPVILV 173 (177)
Q Consensus 143 ~vv~i~GDGsf~m~~qEL~Ta~r~~lpviii 173 (177)
+++++.-||.......+.....+.+..+.++
T Consensus 105 ~~villTDG~~~~~~~~~~~~l~~~~~v~v~ 135 (163)
T cd01476 105 KVVVVLTDGRSHDDPEKQARILRAVPNIETF 135 (163)
T ss_pred eEEEEECCCCCCCchHHHHHHHhhcCCCEEE
Confidence 6777778887665554444444433344443
No 194
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=34.92 E-value=80 Score=24.47 Aligned_cols=36 Identities=22% Similarity=0.041 Sum_probs=14.8
Q ss_pred CCeEEEEEcchhhcccHHHHHHHHH--cCCCcEEEEEe
Q psy15960 141 GKRVVCVQGDSAFGFSGMELETLVR--YRLPVILVILY 176 (177)
Q Consensus 141 ~r~vv~i~GDGsf~m~~qEL~Ta~r--~~lpviiiVlN 176 (177)
..|||.+-=+.+-+-....|.++++ -++|+-.+.+|
T Consensus 76 ~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~ 113 (156)
T TIGR01162 76 PLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIG 113 (156)
T ss_pred CCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcC
Confidence 3444444333332333444444444 34444444333
No 195
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=33.23 E-value=27 Score=24.68 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=17.9
Q ss_pred CCCeEEEEEcchhhcccHHHHHHHH-HcCCCcEEEEE
Q psy15960 140 PGKRVVCVQGDSAFGFSGMELETLV-RYRLPVILVIL 175 (177)
Q Consensus 140 p~r~vv~i~GDGsf~m~~qEL~Ta~-r~~lpviiiVl 175 (177)
...|++.+.|+---....+...... +.+-+..++++
T Consensus 103 ~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i 139 (145)
T PF12695_consen 103 IRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYII 139 (145)
T ss_dssp TTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEE
T ss_pred cCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEe
Confidence 4457777777666666554444432 22334444444
No 196
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=32.65 E-value=3e+02 Score=23.57 Aligned_cols=20 Identities=0% Similarity=0.014 Sum_probs=10.7
Q ss_pred HHHHHhhhhCCCCceEEccC
Q psy15960 74 AAIHAVQVSIPDNCIIVGEG 93 (177)
Q Consensus 74 ~~~~~l~~~l~~~~iiv~dg 93 (177)
.+-+.+.+.+..+.++++.|
T Consensus 35 ~~e~~la~~~g~~~~v~~~s 54 (375)
T PRK11706 35 RCQQWLEQRFGSAKVLLTPS 54 (375)
T ss_pred HHHHHHHHHhCCCeEEEECC
Confidence 34445666665555555553
No 197
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=32.57 E-value=35 Score=24.60 Aligned_cols=30 Identities=33% Similarity=0.301 Sum_probs=17.8
Q ss_pred CeEEEEEcchhhcccHHHHHHHHHcCCCcEEEE
Q psy15960 142 KRVVCVQGDSAFGFSGMELETLVRYRLPVILVI 174 (177)
Q Consensus 142 r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiV 174 (177)
..+++++||+.|.-.++.|. +++..+.++.
T Consensus 97 d~ivLvSgD~Df~~~v~~l~---~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLR---ERGKRVIVVG 126 (146)
T ss_dssp SEEEEE---GGGHHHHHHHH---HH--EEEEEE
T ss_pred CEEEEEECcHHHHHHHHHHH---HcCCEEEEEE
Confidence 68999999999876665554 6677766654
No 198
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=32.46 E-value=1.3e+02 Score=22.71 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=8.9
Q ss_pred CCCeEEEEEcchh
Q psy15960 140 PGKRVVCVQGDSA 152 (177)
Q Consensus 140 p~r~vv~i~GDGs 152 (177)
..-|+++++|+..
T Consensus 84 ~~~Pvl~i~g~~~ 96 (162)
T cd07038 84 EHVPVVHIVGAPS 96 (162)
T ss_pred cCCCEEEEecCCC
Confidence 3457888887765
No 199
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=32.43 E-value=65 Score=26.92 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=24.6
Q ss_pred ccccc-hHHHHHHHHHHhhhcCCCCeEEEEEcchhh
Q psy15960 119 GTMGV-GLGFALAAALYCNHYAPGKRVVCVQGDSAF 153 (177)
Q Consensus 119 gsmG~-~lpaAiGaala~~~~~p~r~vv~i~GDGsf 153 (177)
|..|= ...|++|++|| ..+++|+++--|=++
T Consensus 12 GGVGKTTttAnig~aLA----~~GkKv~liD~DiGL 43 (272)
T COG2894 12 GGVGKTTTTANIGTALA----QLGKKVVLIDFDIGL 43 (272)
T ss_pred CCcCccchhHHHHHHHH----HcCCeEEEEecCcCc
Confidence 55664 46899999999 577899999888765
No 200
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.43 E-value=1.1e+02 Score=25.93 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCCeEEEEEc--chhhccc--HHHHHHHHHcCCCcEEEEEe
Q psy15960 140 PGKRVVCVQG--DSAFGFS--GMELETLVRYRLPVILVILY 176 (177)
Q Consensus 140 p~r~vv~i~G--DGsf~m~--~qEL~Ta~r~~lpviiiVlN 176 (177)
.+.|++++.+ |.+.|+. ++.+-+|.+.++++-++.+.
T Consensus 145 ~~~RIlii~~s~~~~~qYi~~mn~Ifaaqk~~I~Idv~~L~ 185 (279)
T TIGR00627 145 LKSRILVISITPDMALQYIPLMNCIFSAQKQNIPIDVVSIG 185 (279)
T ss_pred CcceEEEEECCCCchHHHHHHHHHHHHHHHcCceEEEEEeC
Confidence 3668888776 8888885 57889999999999888764
No 201
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=32.38 E-value=1.1e+02 Score=28.79 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=32.9
Q ss_pred hccCCCceecCCCcccc-cchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcc-cHHHH-HHHHHcCCCcEEEE
Q psy15960 105 LNNLPRHRLDAGTFGTM-GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF-SGMEL-ETLVRYRLPVILVI 174 (177)
Q Consensus 105 ~~~~p~~~i~~~~~gsm-G~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m-~~qEL-~Ta~r~~lpviiiV 174 (177)
.-..|.+|+..+ -- ...++.|.|++++ --+|++.+.. .|+. ....+ ..++..++|+++++
T Consensus 356 ~~~~p~R~id~G---IaE~~mvg~AaGlA~~-----G~~P~v~~f~--~Fl~ra~dQI~~~~a~~~lpv~~v~ 418 (641)
T PRK12571 356 QKRFPNRVFDVG---IAEQHAVTFAAGLAAA-----GLKPFCAVYS--TFLQRGYDQLLHDVALQNLPVRFVL 418 (641)
T ss_pred HHhCCCcccccC---ccHHHHHHHHHHHHHC-----CCEEEEEehH--HHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 334477776432 22 1235566666653 3456666644 4543 33344 44677899988765
No 202
>KOG0256|consensus
Probab=31.80 E-value=1.1e+02 Score=27.75 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCCCceEEccCcch-hHHHHHhhhccCCC-ceecC-CCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHH
Q psy15960 83 IPDNCIIVGEGANT-MDIGRSLLLNNLPR-HRLDA-GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 159 (177)
Q Consensus 83 l~~~~iiv~dg~~~-~~~~~~~~~~~~p~-~~i~~-~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qE 159 (177)
+.|+.++++.|+.+ .-.-. +-+..|+ -|+.+ ..++..-..+-.-.|+.+. ||-|..-|| |+.|...
T Consensus 144 fdP~~~Vv~~G~T~ane~l~--fcLadpgdafLvPtPyY~gfdrdl~~rTgveiv--------pv~c~Ss~~-f~itv~a 212 (471)
T KOG0256|consen 144 FDPERVVVTNGATSANETLM--FCLADPGDAFLVPTPYYPGFDRDLRWRTGVEIV--------PVHCSSSNG-FQITVEA 212 (471)
T ss_pred cCccceEEecccchhhHHHH--HHhcCCCceeeecCCCCCcccccceeccCceEE--------EEEeecCCC-ccccHHH
Confidence 34556666664433 22222 2234444 34443 4445443334444444443 788888888 9999874
Q ss_pred ----HHHHHHcCCCcEEEEEeC
Q psy15960 160 ----LETLVRYRLPVILVILYN 177 (177)
Q Consensus 160 ----L~Ta~r~~lpviiiVlNN 177 (177)
+..|...+++|.=+++-|
T Consensus 213 lE~A~~~A~~~~~kVkGvlitN 234 (471)
T KOG0256|consen 213 LEAALNQARKLGLKVKGVLITN 234 (471)
T ss_pred HHHHHHHHHHhCCceeEEEEeC
Confidence 455566788887666544
No 203
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=31.38 E-value=1.7e+02 Score=27.22 Aligned_cols=93 Identities=15% Similarity=0.264 Sum_probs=46.8
Q ss_pred CCHHHHH-HHhhhhCCCC-ceEE--cc-CcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeE
Q psy15960 70 LNYYAAI-HAVQVSIPDN-CIIV--GE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144 (177)
Q Consensus 70 l~~~~~~-~~l~~~l~~~-~iiv--~d-g~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~v 144 (177)
.+...++ +.|.+.+..+ .+++ .| ++.. .. .. +.-..|.+|+..+- +=...++.|.|.++. --+|+
T Consensus 278 ~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~-~~-~~-f~~~fP~R~id~GI--aEq~~v~~AaGlA~~-----G~~Pv 347 (581)
T PRK12315 278 ESYSSVTLDYLLKKIKEGKPVVAINAAIPGVF-GL-KE-FRKKYPDQYVDVGI--AEQESVAFASGIAAN-----GARPV 347 (581)
T ss_pred cCHHHHHHHHHHHHhccCCCEEEEeCcccccc-Cc-HH-HHHhccccccCCCc--hHHHHHHHHHHHHHC-----cCeEE
Confidence 4454554 6677666544 3433 34 3322 12 11 33345777763221 002245566666653 35666
Q ss_pred EEEEcchhhcccHHH-HH-HHHHcCCCcEEEE
Q psy15960 145 VCVQGDSAFGFSGME-LE-TLVRYRLPVILVI 174 (177)
Q Consensus 145 v~i~GDGsf~m~~qE-L~-Ta~r~~lpviiiV 174 (177)
++...+ |+.-+-+ +. .++..++|+++++
T Consensus 348 v~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~ 377 (581)
T PRK12315 348 IFVNST--FLQRAYDQLSHDLAINNNPAVMIV 377 (581)
T ss_pred EEeeHH--HHHHHHHHHHHHHHhcCCCEEEEE
Confidence 655554 6543323 33 3567789988875
No 204
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=31.27 E-value=1e+02 Score=27.02 Aligned_cols=47 Identities=11% Similarity=0.206 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEe
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlN 176 (177)
++++++||+.| -.|-...-.|.|-.+|. ..|..+.-..+|+++++.+
T Consensus 59 a~s~v~GA~~a-----Gar~~TaTSg~Gl~Lm~-E~l~~a~~~~~P~Vi~~~~ 105 (365)
T COG0674 59 AISAVIGASYA-----GARAFTATSGQGLLLMA-EALGLAAGTETPLVIVVAQ 105 (365)
T ss_pred HHHHHHHHHhh-----CcceEeecCCccHHHHH-HHHHHHHhccCCeEEEEec
Confidence 56677787776 23334445566654443 3477777778888887765
No 205
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=29.27 E-value=97 Score=21.45 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEEe
Q psy15960 140 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILY 176 (177)
Q Consensus 140 p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVlN 176 (177)
+++.|++-.-||.-.....-+..+.++++|.+++|..
T Consensus 4 ~~~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~ 40 (123)
T PF01522_consen 4 PKKSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVIG 40 (123)
T ss_dssp TSSEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-H
T ss_pred CCCEEEEEEecCchhhHHHHHHHHHhcccceeeeecc
Confidence 3333333334443355556777788999999999863
No 206
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=29.22 E-value=1.2e+02 Score=27.06 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=29.6
Q ss_pred HhhhhCCCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHH
Q psy15960 78 AVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALY 134 (177)
Q Consensus 78 ~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala 134 (177)
.+++.-+++.|++..|.+........+........+.+..-+-|| |+||+|=
T Consensus 336 ~~~~~~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~G-----AiGAAL~ 387 (396)
T COG1924 336 VIKRVDIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMG-----AIGAALI 387 (396)
T ss_pred HhhccCCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhh-----HHHHHHH
Confidence 333333455577777654433322334445556677777666666 7777774
No 207
>PRK06855 aminotransferase; Validated
Probab=29.03 E-value=3.4e+02 Score=23.79 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=18.6
Q ss_pred cchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 149 GDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 149 GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
.|.+|.+...+|..+++.+-++..+++||
T Consensus 151 ~~~~~~~d~~~l~~~~~~~~~~~~i~l~~ 179 (433)
T PRK06855 151 PENNWYPDLDDLENKVKYNPSIAGILLIN 179 (433)
T ss_pred cccCCCCCHHHHHHHHhcCCCceEEEEEC
Confidence 35668889999998886433334444443
No 208
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=28.56 E-value=84 Score=21.53 Aligned_cols=26 Identities=38% Similarity=0.485 Sum_probs=17.5
Q ss_pred cCCCceecCCCcccccchHHHHHHHHHH
Q psy15960 107 NLPRHRLDAGTFGTMGVGLGFALAAALY 134 (177)
Q Consensus 107 ~~p~~~i~~~~~gsmG~~lpaAiGaala 134 (177)
..|.+.+.-+ +|-||||++.|.++++
T Consensus 37 ~GpK~VLViG--aStGyGLAsRIa~aFg 62 (78)
T PF12242_consen 37 NGPKKVLVIG--ASTGYGLASRIAAAFG 62 (78)
T ss_dssp TS-SEEEEES---SSHHHHHHHHHHHHC
T ss_pred CCCceEEEEe--cCCcccHHHHHHHHhc
Confidence 4455555433 7789999999988886
No 209
>PRK08068 transaminase; Reviewed
Probab=27.80 E-value=1.7e+02 Score=24.99 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=15.3
Q ss_pred chhhcccHHHHHHHHHcCCCcE
Q psy15960 150 DSAFGFSGMELETLVRYRLPVI 171 (177)
Q Consensus 150 DGsf~m~~qEL~Ta~r~~lpvi 171 (177)
|.+|.++..+|..+++.+..++
T Consensus 150 ~~~~~~d~~~l~~~~~~~~~~v 171 (389)
T PRK08068 150 ENNFLPDYTKIPEEVAEKAKLM 171 (389)
T ss_pred ccCCCCCHHHHHHhccccceEE
Confidence 4468888888888876554433
No 210
>PRK10518 alkaline phosphatase; Provisional
Probab=27.33 E-value=65 Score=29.44 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=19.4
Q ss_pred CCCeEEEEEcchhhcccHHHHHHHHHcC
Q psy15960 140 PGKRVVCVQGDSAFGFSGMELETLVRYR 167 (177)
Q Consensus 140 p~r~vv~i~GDGsf~m~~qEL~Ta~r~~ 167 (177)
+-|-||+|+||| |..+++..+.-|.
T Consensus 68 ~aKNVIlfIGDG---Mg~s~itaaR~~~ 92 (476)
T PRK10518 68 PAKNVILLIGDG---MGDSEITAARNYA 92 (476)
T ss_pred CCceEEEEEeCC---CCHHHHHHHHHHh
Confidence 457899999998 8888877775543
No 211
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=27.11 E-value=1.6e+02 Score=21.58 Aligned_cols=9 Identities=67% Similarity=0.711 Sum_probs=3.5
Q ss_pred cchHHHHHH
Q psy15960 122 GVGLGFALA 130 (177)
Q Consensus 122 G~~lpaAiG 130 (177)
|+++|++++
T Consensus 34 GHSlGg~lA 42 (153)
T cd00741 34 GHSLGGALA 42 (153)
T ss_pred EcCHHHHHH
Confidence 333333333
No 212
>PRK07681 aspartate aminotransferase; Provisional
Probab=26.94 E-value=1.8e+02 Score=25.05 Aligned_cols=24 Identities=4% Similarity=-0.009 Sum_probs=16.0
Q ss_pred cchhhcccHHHHHHHHHcCCCcEE
Q psy15960 149 GDSAFGFSGMELETLVRYRLPVIL 172 (177)
Q Consensus 149 GDGsf~m~~qEL~Ta~r~~lpvii 172 (177)
.|++|.....+|..+...+..+++
T Consensus 148 ~~~~~~~d~~~l~~~~~~~~k~v~ 171 (399)
T PRK07681 148 KENDFLPDLELIPEEIADKAKMMI 171 (399)
T ss_pred CCCCCcCCHHHHHHhccccceEEE
Confidence 456788888888777655544433
No 213
>KOG1145|consensus
Probab=26.85 E-value=59 Score=30.58 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=47.5
Q ss_pred hhhhCCCCceEEcc-CcchhHHHHHhhhccCCCc--eecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhc-
Q psy15960 79 VQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRH--RLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG- 154 (177)
Q Consensus 79 l~~~l~~~~iiv~d-g~~~~~~~~~~~~~~~p~~--~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~- 154 (177)
|-+.|..-.|...| ||-+..+|.+...++.+.+ |+-.. |.+.|+---|-||.+ .+--|+++.+|-|.+
T Consensus 169 LLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTP--GHaAF~aMRaRGA~v------tDIvVLVVAadDGVmp 240 (683)
T KOG1145|consen 169 LLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTP--GHAAFSAMRARGANV------TDIVVLVVAADDGVMP 240 (683)
T ss_pred HHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCC--cHHHHHHHHhccCcc------ccEEEEEEEccCCccH
Confidence 33444455677777 7766556654344443332 33222 222222222333333 354566666766665
Q ss_pred ccHHHHHHHHHcCCCcEEEE
Q psy15960 155 FSGMELETLVRYRLPVILVI 174 (177)
Q Consensus 155 m~~qEL~Ta~r~~lpviiiV 174 (177)
-|.+.+..|..-+.|+++-|
T Consensus 241 QT~EaIkhAk~A~VpiVvAi 260 (683)
T KOG1145|consen 241 QTLEAIKHAKSANVPIVVAI 260 (683)
T ss_pred hHHHHHHHHHhcCCCEEEEE
Confidence 46888888888888866543
No 214
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=26.59 E-value=1.3e+02 Score=20.81 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=21.6
Q ss_pred CCCCeEEEEEcchhhcccHHHHHHHHHcCCCc
Q psy15960 139 APGKRVVCVQGDSAFGFSGMELETLVRYRLPV 170 (177)
Q Consensus 139 ~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpv 170 (177)
.+++++|+++..|+......-..++.+.+.++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v 93 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPV 93 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeE
Confidence 46788888886665444555566777888873
No 215
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=26.43 E-value=58 Score=23.82 Aligned_cols=30 Identities=33% Similarity=0.241 Sum_probs=20.9
Q ss_pred CeEEEEEcchhhcccHHHHHHHHHcCCCcEEEE
Q psy15960 142 KRVVCVQGDSAFGFSGMELETLVRYRLPVILVI 174 (177)
Q Consensus 142 r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiV 174 (177)
..+|+++||+.|.-.++. +.+++..++++-
T Consensus 101 d~ivLvSgD~Df~~~i~~---lr~~G~~V~v~~ 130 (149)
T cd06167 101 DTIVLVSGDSDFVPLVER---LRELGKRVIVVG 130 (149)
T ss_pred CEEEEEECCccHHHHHHH---HHHcCCEEEEEc
Confidence 478999999988765444 445577766653
No 216
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=26.03 E-value=96 Score=27.22 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=19.8
Q ss_pred hhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 151 SAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 151 Gsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
=.|+.+..+|..++.. +...+++||
T Consensus 147 ~~f~~d~~~l~~~i~~--ktk~i~ln~ 171 (393)
T COG0436 147 NGFKPDLEDLEAAITP--KTKAIILNS 171 (393)
T ss_pred cCCcCCHHHHHhhcCc--cceEEEEeC
Confidence 3699999999999887 555777775
No 217
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=25.42 E-value=1.2e+02 Score=30.98 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHHHHcCCCcEEEEE
Q psy15960 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIL 175 (177)
Q Consensus 124 ~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiVl 175 (177)
++++++||+.+ +.++..++-=.+|.+...-|..++-..+|+++.|.
T Consensus 63 A~~av~GA~~a------Gara~T~TSs~GL~LM~e~l~~~ag~~~P~Vi~va 108 (1165)
T TIGR02176 63 AAGAVHGALQT------GALTTTFTASQGLLLMIPNMYKIAGELLPCVFHVS 108 (1165)
T ss_pred HHHHHHhHhhc------CCCEEEecChhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 45567776654 34566666555565555666666666788777665
No 218
>PRK09620 hypothetical protein; Provisional
Probab=24.37 E-value=1.5e+02 Score=24.08 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=32.2
Q ss_pred CceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchh
Q psy15960 86 NCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 152 (177)
Q Consensus 86 ~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGs 152 (177)
..|+++-|++. +.=.|.+|+++..-|.||+.+.-++ . ..+-.|+++.|-.+
T Consensus 4 k~vlITaG~T~--------E~iD~VR~itN~SSGfiGs~LA~~L----~----~~Ga~V~li~g~~~ 54 (229)
T PRK09620 4 KKVLITSGGCL--------EKWDQVRGHTNMAKGTIGRIIAEEL----I----SKGAHVIYLHGYFA 54 (229)
T ss_pred CEEEEeCCCcc--------CCcCCeeEecCCCcCHHHHHHHHHH----H----HCCCeEEEEeCCCc
Confidence 34666665532 2235788999988898887665443 2 24456887777543
No 219
>PF13020 DUF3883: Domain of unknown function (DUF3883)
Probab=23.90 E-value=95 Score=21.11 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=21.9
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEEEE
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILVIL 175 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviiiVl 175 (177)
.+...|.||..|+..|.+++-.-.+.++
T Consensus 52 ~~~~~f~lS~nE~~~a~~~~~~Y~l~~V 79 (91)
T PF13020_consen 52 SNSNPFELSRNEWEFAREHGDRYWLYRV 79 (91)
T ss_pred cCCceEEEeHHHHHHHHhCCCCEEEEEE
Confidence 5788899999999999988866444443
No 220
>PRK06290 aspartate aminotransferase; Provisional
Probab=23.89 E-value=2.1e+02 Score=25.02 Aligned_cols=26 Identities=4% Similarity=0.025 Sum_probs=17.1
Q ss_pred EcchhhcccHHHHHHHHHcCCCcEEE
Q psy15960 148 QGDSAFGFSGMELETLVRYRLPVILV 173 (177)
Q Consensus 148 ~GDGsf~m~~qEL~Ta~r~~lpviii 173 (177)
..|+.|.....+|..+++.+..++++
T Consensus 160 ~~~~~~~~d~~~l~~~~~~~~k~i~l 185 (410)
T PRK06290 160 LEENNFLPDLDSIPKDIKEKAKLLYL 185 (410)
T ss_pred CCCcCCcCCHHHHHHhhcccceEEEE
Confidence 34567888888888777655443333
No 221
>PHA02031 putative DnaG-like primase
Probab=23.81 E-value=3.9e+02 Score=22.53 Aligned_cols=83 Identities=18% Similarity=0.072 Sum_probs=49.5
Q ss_pred CCCceEEccCcchhHHHHHhhhccCCCceecCCCcccccchHHHHHHHHHHhhhcC-CCCeEEEEEcchhhcccH-HHHH
Q psy15960 84 PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYA-PGKRVVCVQGDSAFGFSG-MELE 161 (177)
Q Consensus 84 ~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i~~~~~gsmG~~lpaAiGaala~~~~~-p~r~vv~i~GDGsf~m~~-qEL~ 161 (177)
..+.+|++||--..-...+ ....+. ....++||.+|.-..-..|-. . .++-++++-||-+-+-.. ..+.
T Consensus 158 ~~~~vIlvEGYmDVI~l~~--a~~aG~----~naVA~LGTALT~~q~~~L~r---~~~~~Vil~fDgD~AG~~Aa~ra~~ 228 (266)
T PHA02031 158 MPRPVVLTEDYLSALKVRW--ACNKPE----VFAVALLGTRLRDRLAAILLQ---QTCPRVLIFLDGDPAGVDGSAGAMR 228 (266)
T ss_pred cCCeEEEEcCcHHHHHHHH--HHhcCc----ceEEECCcccCCHHHHHHHHh---cCCCCEEEEeCCCHHHHHHHHHHHH
Confidence 4677888997633211111 111111 235689999887666555542 2 467889999999887643 3444
Q ss_pred HHHHcCCCcEEEEE
Q psy15960 162 TLVRYRLPVILVIL 175 (177)
Q Consensus 162 Ta~r~~lpviiiVl 175 (177)
.+...++.+.|+++
T Consensus 229 ~l~~~~~~v~vv~l 242 (266)
T PHA02031 229 RLRPLLIEGQVIIT 242 (266)
T ss_pred HHHHcCCceEEEEC
Confidence 45566777776654
No 222
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=23.47 E-value=1.4e+02 Score=25.51 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=21.2
Q ss_pred EEEEEcchhhcccHHHHHHHHHcCCCcEEEE
Q psy15960 144 VVCVQGDSAFGFSGMELETLVRYRLPVILVI 174 (177)
Q Consensus 144 vv~i~GDGsf~m~~qEL~Ta~r~~lpviiiV 174 (177)
+++++|.|...+.. +..+..++...+|++
T Consensus 171 ~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~ 199 (350)
T COG1063 171 TVVVVGAGPIGLLA--IALAKLLGASVVIVV 199 (350)
T ss_pred EEEEECCCHHHHHH--HHHHHHcCCceEEEe
Confidence 89999999987655 666666776655554
No 223
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=23.46 E-value=25 Score=27.88 Aligned_cols=19 Identities=42% Similarity=0.461 Sum_probs=15.0
Q ss_pred cccccchHHHHHHHHHHhh
Q psy15960 118 FGTMGVGLGFALAAALYCN 136 (177)
Q Consensus 118 ~gsmG~~lpaAiGaala~~ 136 (177)
-|-||++-||++++.++..
T Consensus 104 dGvlGFSQGA~lAa~ll~~ 122 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLAL 122 (212)
T ss_dssp SEEEEETHHHHHHHHHHHH
T ss_pred EEEEeecHHHHHHHHHHHH
Confidence 4788998888888877753
No 224
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=23.43 E-value=54 Score=25.36 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcchhhcccHHHHHHH-HHcCCCcEEEE
Q psy15960 127 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL-VRYRLPVILVI 174 (177)
Q Consensus 127 aAiGaala~~~~~p~r~vv~i~GDGsf~m~~qEL~Ta-~r~~lpviiiV 174 (177)
.+-||.+| .+++.+++.-- ++.-+++.|.+. +-|++|+.+++
T Consensus 57 IcAGa~lA-----Gkk~ailmQns-GlGNsiNal~SL~~ty~iPl~ml~ 99 (172)
T COG4032 57 ICAGAYLA-----GKKPAILMQNS-GLGNSINALASLYVTYKIPLLMLA 99 (172)
T ss_pred eehhhhhc-----CCCcEEEEecc-CcchHHHHHHHHHHHhccchhhhh
Confidence 46678887 45566665543 466677777775 67888877654
No 225
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.37 E-value=49 Score=25.43 Aligned_cols=13 Identities=8% Similarity=-0.197 Sum_probs=6.8
Q ss_pred CHHHHHHHhhhhC
Q psy15960 71 NYYAAIHAVQVSI 83 (177)
Q Consensus 71 ~~~~~~~~l~~~l 83 (177)
+|+++.+.+++.-
T Consensus 40 ~p~~l~~~~~~~~ 52 (150)
T PF00731_consen 40 TPERLLEFVKEYE 52 (150)
T ss_dssp SHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhc
Confidence 4555555555443
No 226
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=23.20 E-value=3.5e+02 Score=20.74 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=32.8
Q ss_pred hhccCCC-ceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEcchhhcccH-HHH-HHHHHc--------CCCcEE
Q psy15960 104 LLNNLPR-HRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG-MEL-ETLVRY--------RLPVIL 172 (177)
Q Consensus 104 ~~~~~p~-~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~GDGsf~m~~-qEL-~Ta~r~--------~lpvii 172 (177)
+.-..|. +++..+- +=-..++.|.|.++. +.++++-+.=+.|.... ..| ..+... ++|+++
T Consensus 37 ~~~~~p~~R~~~~gI--aEq~~vg~AaGlA~~------G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i 108 (167)
T cd07036 37 LLDKFGPDRVIDTPI--AEAGIVGLAVGAAMN------GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVI 108 (167)
T ss_pred HHHhCCCceEEeCCC--cHHHHHHHHHHHHHc------CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEE
Confidence 4556777 7774331 112345666676664 34566544455565432 223 223332 588887
Q ss_pred EE
Q psy15960 173 VI 174 (177)
Q Consensus 173 iV 174 (177)
+.
T Consensus 109 ~~ 110 (167)
T cd07036 109 RG 110 (167)
T ss_pred EE
Confidence 65
No 227
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=22.88 E-value=2.4e+02 Score=18.85 Aligned_cols=7 Identities=0% Similarity=-0.002 Sum_probs=3.4
Q ss_pred eEEEEEc
Q psy15960 143 RVVCVQG 149 (177)
Q Consensus 143 ~vv~i~G 149 (177)
-.|+++.
T Consensus 51 ~PIll~~ 57 (92)
T PF04122_consen 51 APILLVN 57 (92)
T ss_pred CeEEEEC
Confidence 3455555
No 228
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=22.61 E-value=3.3e+02 Score=20.94 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=20.6
Q ss_pred CCeEEEEEcchhhcc--cHHHHH-HHHHcCCCcEEEEE
Q psy15960 141 GKRVVCVQGDSAFGF--SGMELE-TLVRYRLPVILVIL 175 (177)
Q Consensus 141 ~r~vv~i~GDGsf~m--~~qEL~-Ta~r~~lpviiiVl 175 (177)
.++++++.+||+-.- ...++. .+.+.++.+.+|-+
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~Igi 144 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGL 144 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEe
Confidence 467888888876432 233443 34456776655543
No 229
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=21.78 E-value=3.1e+02 Score=23.39 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=20.4
Q ss_pred cC-CCceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 107 NL-PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 107 ~~-p~~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
.. |.+|+..+- +=...++.|.|.+++ ..+|++++..
T Consensus 47 ~fgp~R~~d~gI--aE~~~vg~AaGlA~~-----G~~Piv~~~~ 83 (327)
T PRK09212 47 QFGPKRVIDTPI--TEHGFAGLAVGAAFA-----GLRPIVEFMT 83 (327)
T ss_pred HhCCCceeecch--hHHHHHHHHHHHHHc-----CCeeEEEeeh
Confidence 44 788774331 113356677777764 4566766544
No 230
>COG1923 Hfq Uncharacterized host factor I protein [General function prediction only]
Probab=21.78 E-value=91 Score=21.30 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.5
Q ss_pred HHHHHHHcCCCcEEEEEe
Q psy15960 159 ELETLVRYRLPVILVILY 176 (177)
Q Consensus 159 EL~Ta~r~~lpviiiVlN 176 (177)
-|-++...++|+.|++.|
T Consensus 11 fLn~~Rk~~i~VtIfLvN 28 (77)
T COG1923 11 FLNALRKEKIPVTIFLVN 28 (77)
T ss_pred HHHHHHhcCCeEEEEEEc
Confidence 467788899999999988
No 231
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.62 E-value=59 Score=27.62 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=11.9
Q ss_pred eEEEEEcchhhcccHHHH
Q psy15960 143 RVVCVQGDSAFGFSGMEL 160 (177)
Q Consensus 143 ~vv~i~GDGsf~m~~qEL 160 (177)
-++++=|||.++..++.+
T Consensus 60 ~vi~~GGDGT~l~~~~~~ 77 (305)
T PRK02645 60 LAIVLGGDGTVLAAARHL 77 (305)
T ss_pred EEEEECCcHHHHHHHHHh
Confidence 567777777777665554
No 232
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=21.13 E-value=1.4e+02 Score=30.15 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhcCC------CCeEEEEEcchhhcc--cHHHHHHHHH-cCCC---cEEEEEeC
Q psy15960 126 GFALAAALYCNHYAP------GKRVVCVQGDSAFGF--SGMELETLVR-YRLP---VILVILYN 177 (177)
Q Consensus 126 paAiGaala~~~~~p------~r~vv~i~GDGsf~m--~~qEL~Ta~r-~~lp---viiiVlNN 177 (177)
|..-|+.=|.|+.-. .--.|++-||.+|-= .+.|-..+.+ .+++ .+.||+||
T Consensus 626 pVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNN 689 (1228)
T PRK12270 626 PVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNN 689 (1228)
T ss_pred hHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEec
Confidence 555566556554322 113477889999844 3455555544 4677 89999999
No 233
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=20.85 E-value=4.2e+02 Score=22.64 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=21.8
Q ss_pred hhccCCC-ceecCCCcccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy15960 104 LLNNLPR-HRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 149 (177)
Q Consensus 104 ~~~~~p~-~~i~~~~~gsmG~~lpaAiGaala~~~~~p~r~vv~i~G 149 (177)
+.-..|. +|+..+- +=...++.|.|++++ -.+|++....
T Consensus 44 f~~~fp~~R~~n~gI--aEq~~vg~AaGlA~~-----G~~pvv~~~~ 83 (327)
T CHL00144 44 LHEKYGDLRVLDTPI--AENSFTGMAIGAAMT-----GLRPIVEGMN 83 (327)
T ss_pred HHHHCCCccEeeccc--cHHHHHHHHHHHHHC-----CCEEEEEeeh
Confidence 4456777 7775332 113356677777775 3456665454
No 234
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=20.51 E-value=1.1e+02 Score=19.92 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=14.2
Q ss_pred HHHHHHcCCCcEEEEEe
Q psy15960 160 LETLVRYRLPVILVILY 176 (177)
Q Consensus 160 L~Ta~r~~lpviiiVlN 176 (177)
|..+.+.+.|+++++.|
T Consensus 4 ln~~r~~~~~Vtv~L~N 20 (61)
T cd01716 4 LNAARKEKIPVTIYLVN 20 (61)
T ss_pred HHHHHHcCCcEEEEEeC
Confidence 56678889999999887
No 235
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=20.46 E-value=3.6e+02 Score=22.92 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=16.4
Q ss_pred cchhhcccHHHHHHHHHcCCCcEEEEEeC
Q psy15960 149 GDSAFGFSGMELETLVRYRLPVILVILYN 177 (177)
Q Consensus 149 GDGsf~m~~qEL~Ta~r~~lpviiiVlNN 177 (177)
.|+.+.+...++......+. .++++||
T Consensus 147 ~~~~~~~d~~~l~~~~~~~~--k~i~l~~ 173 (388)
T PRK07366 147 AENDFLPVFADIPTEVLAQA--RLMVLSY 173 (388)
T ss_pred CccCCCCCHHHHHHhhcccc--eEEEEeC
Confidence 46678888878766654443 4445544
No 236
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=20.36 E-value=1.3e+02 Score=23.26 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=23.8
Q ss_pred HHHHHHhhhhCCCCceEEccCcchhHHHHHhhhccCCCcee
Q psy15960 73 YAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRL 113 (177)
Q Consensus 73 ~~~~~~l~~~l~~~~iiv~dg~~~~~~~~~~~~~~~p~~~i 113 (177)
..++..|.+.+++++|+.+.+++. ......-.+..|.+++
T Consensus 94 ~~~~~~l~~~~~~~~ilasnTSsl-~i~~la~~~~~p~R~i 133 (180)
T PF02737_consen 94 QELFAELDEICPPDTILASNTSSL-SISELAAALSRPERFI 133 (180)
T ss_dssp HHHHHHHHCCS-TTSEEEE--SSS--HHHHHTTSSTGGGEE
T ss_pred HHHHHHHHHHhCCCceEEecCCCC-CHHHHHhccCcCceEE
Confidence 569999999999999998874332 1221112345666655
No 237
>PRK07324 transaminase; Validated
Probab=20.35 E-value=2.7e+02 Score=23.77 Aligned_cols=17 Identities=29% Similarity=0.139 Sum_probs=9.6
Q ss_pred hhhcccHHHHHHHHHcC
Q psy15960 151 SAFGFSGMELETLVRYR 167 (177)
Q Consensus 151 Gsf~m~~qEL~Ta~r~~ 167 (177)
.+|.....+|..+.+.+
T Consensus 137 ~~~~~d~~~l~~~~~~~ 153 (373)
T PRK07324 137 NGWLPDLDELRRLVRPN 153 (373)
T ss_pred cCCCCCHHHHHHhCCCC
Confidence 45666666666555443
No 238
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=20.10 E-value=1.7e+02 Score=27.18 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=16.3
Q ss_pred CCCCCHH-HHHHHhhhhCCCCceE
Q psy15960 67 SVPLNYY-AAIHAVQVSIPDNCII 89 (177)
Q Consensus 67 ~~~l~~~-~~~~~l~~~l~~~~ii 89 (177)
..|+||. .+++.|.+.+++..+.
T Consensus 25 ~YPiTP~t~i~e~l~~~~~~~~~~ 48 (595)
T TIGR03336 25 AYPGTPSSEITDTLAKVAKRAGVY 48 (595)
T ss_pred ecCCCCHHHHHHHHHHhhhhccEE
Confidence 4577775 5888888888766443
No 239
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=20.09 E-value=44 Score=24.09 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=15.5
Q ss_pred CeEEEEEcchhhcccHHHHHHH
Q psy15960 142 KRVVCVQGDSAFGFSGMELETL 163 (177)
Q Consensus 142 r~vv~i~GDGsf~m~~qEL~Ta 163 (177)
..+|++=|||++...++.|...
T Consensus 56 ~~ivv~GGDGTl~~vv~~l~~~ 77 (130)
T PF00781_consen 56 DVIVVVGGDGTLNEVVNGLMGS 77 (130)
T ss_dssp SEEEEEESHHHHHHHHHHHCTS
T ss_pred cEEEEEcCccHHHHHHHHHhhc
Confidence 4788888899777666665443
No 240
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=20.06 E-value=1.2e+02 Score=19.82 Aligned_cols=18 Identities=33% Similarity=0.528 Sum_probs=14.7
Q ss_pred HHHHHHHcCCCcEEEEEe
Q psy15960 159 ELETLVRYRLPVILVILY 176 (177)
Q Consensus 159 EL~Ta~r~~lpviiiVlN 176 (177)
-|..+.+.+.|+++++.|
T Consensus 7 fln~~r~~~~~Vti~L~n 24 (61)
T TIGR02383 7 FLNTLRKERIPVTVFLVN 24 (61)
T ss_pred HHHHHHHcCCcEEEEEeC
Confidence 356678889999999887
Done!