RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15960
(177 letters)
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 174 bits (443), Expect = 3e-56
Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 4/106 (3%)
Query: 72 YYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAA 131
Y +H +Q ++PD+ IIV +G NTMD R +L PRHRLDAGTFGT+GVGLG+A+AA
Sbjct: 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAA 60
Query: 132 ALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
AL P KRVV V+GD AFGFSGMELET VRY LP+++V+ N
Sbjct: 61 ALAR----PDKRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNN 102
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 142 bits (360), Expect = 3e-40
Identities = 58/124 (46%), Positives = 85/124 (68%), Gaps = 10/124 (8%)
Query: 59 VEKM---IQDESVPLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRL 113
KM + ++ P+N+Y A+ A++ + +N +V EGANT+D+ R+++ PRHRL
Sbjct: 359 AAKMAEKLSTDTQPMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRL 418
Query: 114 DAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILV 173
D GT+G MG+G+G+A+AAA+ GK VV ++GDSAFGFSGME+ET+ RY LPV +V
Sbjct: 419 DCGTWGVMGIGMGYAIAAAV-----ETGKPVVAIEGDSAFGFSGMEVETICRYNLPVTVV 473
Query: 174 ILYN 177
I N
Sbjct: 474 IFNN 477
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 131 bits (331), Expect = 3e-36
Identities = 60/120 (50%), Positives = 85/120 (70%), Gaps = 8/120 (6%)
Query: 60 EKMIQDESVPLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGT 117
E++ ES P+NY+ A+ A++ + DN +V EGANT+D+ R+++ PRHRLD GT
Sbjct: 357 ERLSASES-PMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYKPRHRLDVGT 415
Query: 118 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
+G MG+G+G+A+AAA+ GK VV ++GDSAFGFSGME+ET+ RY LPV +VI N
Sbjct: 416 WGVMGIGMGYAIAAAV-----ETGKPVVALEGDSAFGFSGMEVETICRYNLPVCVVIFNN 470
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 102 bits (256), Expect = 9e-26
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 64 QDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 123
+ + I ++ +PD+ I+V + PR L +G GTMG
Sbjct: 353 ELADDGIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGF 412
Query: 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
GL A+ A L P ++VV + GD F +G ELET VRY LPV +V+L N
Sbjct: 413 GLPAAIGAKLAA----PDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNN 462
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 86.2 bits (214), Expect = 9e-22
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 74 AAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 133
+ A++ ++P++ I+V + N+ L R L + FG MG GL A+ AAL
Sbjct: 1 RVLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAAL 60
Query: 134 YCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
AP + VVC+ GD F +G EL T VRY LPVI+V+ N
Sbjct: 61 A----APDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNN 100
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 83.8 bits (208), Expect = 4e-21
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 93 GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 152
G + M R PR L +G GTMG GL A+ A L P + VV + GD
Sbjct: 3 GCHQMWAAR-YYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLAR----PDRPVVAIAGDGG 57
Query: 153 FGFSGMELETLVRYRLPVILVILYN 177
F + EL T VRY LP+ +V+L N
Sbjct: 58 FQMNLQELATAVRYNLPITVVVLNN 82
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 79.0 bits (195), Expect = 1e-17
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 65 DESVPLN---YYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTM 121
D+ P++ Y + + + + I++G+G + + + P LD G FG +
Sbjct: 353 DDRDPIHPMRVYGELAPL---LDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCL 409
Query: 122 GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVI 174
G G G+ALAA L P ++VV +QGD AFGFS M+++TLVR+ LPV+ VI
Sbjct: 410 GTGPGYALAARLA----RPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVI 458
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the
condensation of two molecules of pyruvate to give the
acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the
precursor of the branched chain amino acids, valine and
leucine. AHAS also catalyzes the condensation of
pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In
addition to requiring TPP and a divalent metal ion as
cofactors, AHAS requires FAD.
Length = 186
Score = 72.9 bits (180), Expect = 1e-16
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 75 AIHAVQVSIPDNCIIV-GEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 133
I + P + I+ G + M + PR L +G GTMG GL A+ A +
Sbjct: 6 VIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKK-PRSWLTSGGLGTMGFGLPAAIGAKV 64
Query: 134 YCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P K V+C+ GD +F + EL T +Y LPV +VIL N
Sbjct: 65 AR----PDKTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNN 104
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate
oxidase (POX) subfamily, TPP-binding module; composed of
proteins similar to Lactobacillus plantarum POX, which
plays a key role in controlling acetate production under
aerobic conditions. POX decarboxylates pyruvate,
producing hydrogen peroxide and the energy-storage
metabolite acetylphosphate. It requires FAD in addition
to TPP and a divalent cation as cofactors.
Length = 178
Score = 71.0 bits (175), Expect = 6e-16
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 69 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 127
P++ + PD+ I + G T+ R L +N R L +G TMG GL
Sbjct: 1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFIL-SGLLATMGNGLPG 59
Query: 128 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
A+AA L P ++V+ + GD F +L T V+Y LPVI+V+ N
Sbjct: 60 AIAAKLAY----PDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNN 105
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate
synthase (ALS) subfamily, TPP-binding module; composed
of proteins similar to Klebsiella pneumoniae ALS, a
catabolic enzyme required for butanediol fermentation.
ALS catalyzes the conversion of 2 molecules of pyruvate
to acetolactate and carbon dioxide. ALS does not contain
FAD, and requires TPP and a divalent metal cation for
activity.
Length = 177
Score = 65.8 bits (161), Expect = 7e-14
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 76 IHAVQVSIPDNCI-IVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALY 134
+H ++ + D+ I ++ GA+ + + R P L + TMGV L A+ A L
Sbjct: 5 VHDLRAVMGDDDIVLLDVGAHKIWMAR-YYRTYAPNTCLISNGLATMGVALPGAIGAKLV 63
Query: 135 CNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIL 175
P ++VV V GD F + ELET VR ++P++++I
Sbjct: 64 Y----PDRKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIW 100
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 68.1 bits (167), Expect = 8e-14
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 75 AIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALY 134
A+ +Q ++P++ I+ + N I S L R L G+FG G + A +
Sbjct: 391 ALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIA 450
Query: 135 CNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
C P + VV GD A+G S E+ T VR+ PV V+ N
Sbjct: 451 C----PDRPVVGFAGDGAWGISMNEVMTAVRHNWPVTAVVFRN 489
>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
Xsc-like subfamily, TPP-binding module; composed of
proteins similar to Alcaligenes defragrans
sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
key role in the degradation of taurine, catalyzing the
desulfonation of 2-sulfoacetaldehyde into sulfite and
acetyl phosphate. This enzyme requires TPP and divalent
metal ions for activity.
Length = 196
Score = 63.3 bits (154), Expect = 7e-13
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 69 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 128
P++ + ++ ++P++ I+ + N + S L PR + +FG G+A
Sbjct: 3 PMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGN----CGYA 58
Query: 129 LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
L A + AP + VV + GD A+G S ME+ T VR++LPV V+ N
Sbjct: 59 LPAIIGAKAAAPDRPVVAIAGDGAWGMSMMEIMTAVRHKLPVTAVVFRN 107
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 64.9 bits (159), Expect = 8e-13
Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PRH L + T+GV L +A+AAAL PGK+VV V GD F FS MELET VR +L
Sbjct: 404 PRHLLFSNGMQTLGVALPWAIAAALV----RPGKKVVSVSGDGGFLFSAMELETAVRLKL 459
Query: 169 PVILVI 174
++ +I
Sbjct: 460 NIVHII 465
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 64.4 bits (157), Expect = 1e-12
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 66 ESVPLNYYAAIHAVQVSI-PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 124
+S P+N Y + +Q ++ II + + D + + P L G +G G
Sbjct: 377 DSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYG 436
Query: 125 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
LG A+ A L P V+ + GD+AFG +GM+ ET VR R+P++ ++L N
Sbjct: 437 LGLAMGAKLA----RPDALVINLWGDAAFGMTGMDFETAVRERIPILTILLNN 485
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 62.5 bits (152), Expect = 6e-12
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
RH L + T+GV L +A+ AAL P +VV V GD F FS MELET VR +L
Sbjct: 398 ARHLLISNGMQTLGVALPWAIGAALV----RPNTKVVSVSGDGGFLFSSMELETAVRLKL 453
Query: 169 PVILVI 174
++ +I
Sbjct: 454 NIVHII 459
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 60.1 bits (146), Expect = 4e-11
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 69 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 127
PL++Y I+AV + DN II + G + M ++ LN PR L +G GTMG GL
Sbjct: 369 PLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNR-PRQWLTSGGLGTMGFGLPA 427
Query: 128 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
A+ AAL P ++V+C GD + + E+ T +L V ++++ N
Sbjct: 428 AIGAALAN----PERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNN 473
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 57.6 bits (140), Expect = 8e-11
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 74 AAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 133
AA+ A +P++ IIV E A T + L G +G GL A+ AAL
Sbjct: 8 AALAAA---LPEDAIIVDE-AVTNGLPLRDQLPLTRPGSYFTLRGGGLGWGLPAAVGAAL 63
Query: 134 YCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
P ++VV + GD +F ++ L T RY LPV +VIL N
Sbjct: 64 AN----PDRKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNN 103
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 58.7 bits (142), Expect = 1e-10
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 64 QDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 123
Q+E L+ + ++ ++P++ I+ + N + S L PR L +FG G
Sbjct: 375 QEEGNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGY 434
Query: 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
+ A + P + VV GD A+G S E+ T VR+ +PV V+ N
Sbjct: 435 AFPTIIGAKIAA----PDRPVVAYAGDGAWGMSMNEIMTAVRHDIPVTAVVFRN 484
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 57.8 bits (140), Expect = 3e-10
Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 30/175 (17%)
Query: 17 GDEEVKRVGARRRIRMRDL----IQRAKVE----EGEMKVGGNMRGVDSAVEKMIQDESV 68
GD + +R RDL +RA +E G + V ++
Sbjct: 333 GDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPV-------ALSDAS 385
Query: 69 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGT------MG 122
P+ + +Q + + I+V + + + S+ + N R F T +G
Sbjct: 386 PIRPERIMAELQAVLTGDTIVVADASYS-----SIWVANFLTARRAGMRFLTPRGLAGLG 440
Query: 123 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G+ A+ A + PG V+C+ GD F ELET R +PV +V+L N
Sbjct: 441 WGVPMAIGAKVA----RPGAPVICLVGDGGFAHVWAELETARRMGVPVTIVVLNN 491
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 56.8 bits (138), Expect = 6e-10
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 69 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 128
L A + +P+N I+V E + T G H T G +G GL A
Sbjct: 336 ALTPEAIAQVIAALLPENAIVVDE-SITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLA 394
Query: 129 LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
AA+ C P ++V+ +QGD + ++ L T R L V VI N
Sbjct: 395 TGAAVAC----PDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIFAN 439
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 55.8 bits (135), Expect = 1e-09
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 96 TMDIGRSLL-----LNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 150
T D+G+ + L N PR + + GTMG G+ A+ + P + V+C+ GD
Sbjct: 406 TTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVAL----PDEEVICIAGD 461
Query: 151 SAFGFSGMELETLVRYRLPVILVILYN 177
++F + EL TL +Y + V VI+ N
Sbjct: 462 ASFLMNIQELGTLAQYGINVKTVIINN 488
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 55.1 bits (133), Expect = 2e-09
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 62 MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRS------LLLNNLPRHRLDA 115
+ + I + D I+ T D+G+ PR + +
Sbjct: 355 KMDYTEEGIKPQQVIEELSRVTKDEAIV------TTDVGQHQMWAAQFYPFRKPRRFITS 408
Query: 116 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIL 175
G GTMG GL A+ A + P V+C+ GD +F + EL T V+Y +PV ++IL
Sbjct: 409 GGLGTMGFGLPAAIGAKVA----KPESTVICITGDGSFQMNLQELSTAVQYDIPVKILIL 464
Query: 176 YN 177
N
Sbjct: 465 NN 466
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 54.9 bits (133), Expect = 3e-09
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
P + + + GTMG GL A+ A + P V+CV GD +F + EL T+ R +L
Sbjct: 391 PENFITSSGLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNVQELGTIKRKQL 446
Query: 169 PVILVILYN 177
PV +V+L N
Sbjct: 447 PVKIVLLDN 455
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 54.2 bits (131), Expect = 4e-09
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PR + G GT+G G AL A + P + VV + GD F F EL T V++ +
Sbjct: 392 PRTFVTCGYQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFGVQELATAVQHNI 447
Query: 169 PVILVILYN 177
V+ V+ N
Sbjct: 448 GVVTVVFNN 456
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 54.5 bits (131), Expect = 4e-09
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 91 GEGANTMDIGRSLLLNNL------PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 144
G+ T D+G+ + L PR +++G GTMG F L AAL P + V
Sbjct: 387 GDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMG----FGLPAALGVKMALPEETV 442
Query: 145 VCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
VCV GD + + EL T ++Y LPV+++ L N
Sbjct: 443 VCVTGDGSIQMNIQELSTALQYELPVLVLNLNN 475
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 54.2 bits (131), Expect = 5e-09
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 51 NMRGVDSAVEKMIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLL-----L 105
NM +E+ + S P+ + A+Q D+ ++ ++D+G + L
Sbjct: 340 NMAKWWKWMEEDENNASTPIKPERVMAAIQKIADDDAVL------SVDVGTVTVWSARYL 393
Query: 106 NNLPRHR-LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLV 164
N + + + GTMG GL A+AA + P ++ + + GD F + T V
Sbjct: 394 NLGTNQKFIISSWLGTMGCGLPGAIAAKIA----FPDRQAIAICGDGGFSMVMQDFVTAV 449
Query: 165 RYRLPVILVILYN 177
+Y+LP+++V+L N
Sbjct: 450 KYKLPIVVVVLNN 462
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 54.1 bits (131), Expect = 5e-09
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 64 QDESVPLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGR--------SLLLNNLPRHRLD 114
D+ P+ + + +V D+ +I+ GA + R + LL+N
Sbjct: 351 DDDRFPMKPQRIVADLRKVMPDDDIVILDNGAYKIWFARNYRAYEPNTCLLDN------- 403
Query: 115 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVI 174
TMG GL A+AA L P ++V+ V GD F + ELET VR LP++++I
Sbjct: 404 --ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLI 457
Query: 175 L 175
L
Sbjct: 458 L 458
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 54.0 bits (130), Expect = 6e-09
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PR + +G GTMG G A+ A + P V+ + GD F + EL T+ Y +
Sbjct: 409 PRSFISSGGLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMNSQELATIAEYDI 464
Query: 169 PVILVILYN 177
PV++ I N
Sbjct: 465 PVVICIFDN 473
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 53.7 bits (130), Expect = 6e-09
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 115 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVI 174
A T G+MG GL A+AA L P + VV GD F +G EL T V+Y LP+I VI
Sbjct: 411 APTSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMNGQELATAVQYGLPII-VI 465
Query: 175 LYN 177
+ N
Sbjct: 466 VVN 468
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 51.8 bits (125), Expect = 1e-08
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 126 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G+++ AAL AP +RV+ + GD +F + EL T++RY L I+ ++ N
Sbjct: 53 GYSVPAALGAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINN 104
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 52.7 bits (127), Expect = 1e-08
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 65 DESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 124
PL+ + + P + I+V E +T R + +LP R G+F TM G
Sbjct: 354 APGEPLSVAFVLQTLAALRPADAIVVEEAPST----RPAMQEHLPMRR--QGSFYTMASG 407
Query: 125 -LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
LG+ L AA+ PG+RV+ + GD + +S L + + +LPV VIL N
Sbjct: 408 GLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNN 461
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 52.6 bits (126), Expect = 1e-08
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 107 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 166
+ PR +++G GTMG F L AA+ P VVCV GD + + EL T +Y
Sbjct: 409 DKPRRWINSGGAGTMG----FGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQY 464
Query: 167 RLPVILVILYN 177
+PV++V L N
Sbjct: 465 DIPVVIVSLNN 475
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 52.0 bits (125), Expect = 2e-08
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 107 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 166
N PR +G GTMG GL AL A L P K V+ GD + + EL T V Y
Sbjct: 402 NYPRQLATSGGLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMNIQELMTAVEY 457
Query: 167 RLPVILVILYN 177
++PVI +IL N
Sbjct: 458 KIPVINIILNN 468
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 52.1 bits (125), Expect = 3e-08
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 107 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 166
N P +++G GTMG GL A+ L P + V CV G+ + + EL T ++Y
Sbjct: 411 NKPNRWINSGGLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMNIQELSTCLQY 466
Query: 167 RLPVILVILYN 177
LPV ++ L N
Sbjct: 467 GLPVKIINLNN 477
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 51.8 bits (124), Expect = 3e-08
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 69 PLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 127
PL Y A+ +++ D + G ++ R L + + + F TMGVG+
Sbjct: 358 PLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWI-TSNLFATMGVGVPG 416
Query: 128 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
A+AA L +Y P ++V + GD AF + +L T V+Y LPVI ++ N
Sbjct: 417 AIAAKL---NY-PDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSN 462
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 51.2 bits (123), Expect = 5e-08
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 96 TMDIGR-----SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 150
T D+G+ + L PR L + GTMG GL A+ A + H P + V+C+ GD
Sbjct: 402 TTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQI--AH--PNELVICISGD 457
Query: 151 SAFGFSGMELETLVRYRLPVILVILYN 177
++F + EL T+ +Y LP+ ++I+ N
Sbjct: 458 ASFQMNLQELGTIAQYNLPIKIIIINN 484
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 48.2 bits (115), Expect = 5e-07
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PR + +G GTMG G A+ A + P K V+ + GD +F + EL T V+ +
Sbjct: 404 PRTFITSGGLGTMGYGFPAAIGAKVG----KPDKTVIDIAGDGSFQMNSQELATAVQNDI 459
Query: 169 PVILVILYN 177
PVI+ IL N
Sbjct: 460 PVIVAILNN 468
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 48.0 bits (114), Expect = 6e-07
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PR L +G GTMG G A+ A L + V+C+ GD++F + EL+T+ +
Sbjct: 412 PRTFLTSGGLGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMNIQELQTIAENNI 467
Query: 169 PVILVILYN 177
PV + I+ N
Sbjct: 468 PVKVFIINN 476
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 47.7 bits (114), Expect = 7e-07
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 83 IPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGT-FGTMGVGLGFALAAALYCNHYAPG 141
+PD I VG+ + G + PR +A T +GT+G GL A+ AAL AP
Sbjct: 371 LPD-AIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALG----APE 425
Query: 142 KRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
+ VVC+ GD F+ EL + V LP+I+++ N
Sbjct: 426 RPVVCLVGDGGLQFTLPELASAVEADLPLIVLLWNN 461
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 47.5 bits (113), Expect = 8e-07
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 65 DESVPLNYYAAIHAVQVSIPDNCIIV-GEGANTMDIGRSLLLNNL-PRHRLDAGTFGTMG 122
+E+ L + + ++ ++P + I+ G G + M + L PR L + GTMG
Sbjct: 367 EENGKLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAE--VFWEVLEPRTFLTSSGMGTMG 424
Query: 123 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
GL A+ A L P K VV + GD +F +G L T V +PVI VI N
Sbjct: 425 FGLPAAMGAKLA----RPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISVIFDN 475
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 47.5 bits (113), Expect = 8e-07
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 107 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 166
+ PR +++G GTMG F L AA+ P + VVCV GD + + EL T ++Y
Sbjct: 409 DKPRRWINSGGLGTMG----FGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQY 464
Query: 167 RLPVILVILYN 177
+PV ++ L N
Sbjct: 465 DIPVKIINLNN 475
>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family,
IOR-alpha subfamily, TPP-binding module; composed of
proteins similar to indolepyruvate ferredoxin
oxidoreductase (IOR) alpha subunit. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate, which are generated by
the transamination of aromatic amino acids, to the
corresponding aryl acetyl-CoA.
Length = 178
Score = 45.3 bits (108), Expect = 2e-06
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 98 DIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG 157
DIG L P + +D T MG +G A+ A + K+VV V GDS F SG
Sbjct: 32 DIGCYTLGALPPLNAID--TCTCMGASIGVAIGMA----KASEDKKVVAVIGDSTFFHSG 85
Query: 158 ME-LETLVRYRLPVILVILYN 177
+ L V + + +VIL N
Sbjct: 86 ILGLINAVYNKANITVVILDN 106
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 45.9 bits (109), Expect = 3e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 107 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 166
N PR +++G GTMGVGL +A+ + P VVC+ G+ + EL T ++Y
Sbjct: 425 NEPRRWINSGGLGTMGVGLPYAMGIKMA----HPDDDVVCITGEGSIQMCIQELSTCLQY 480
Query: 167 RLPVILVILYN 177
PV ++ L N
Sbjct: 481 DTPVKIISLNN 491
>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional.
Length = 518
Score = 46.0 bits (109), Expect = 3e-06
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 70 LNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFAL 129
LN + PD I E A T + + + H T G++G GL A
Sbjct: 341 LNSLGVAQLIAHRTPDQAIYADE-ALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAA 399
Query: 130 AAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
AA+ P ++VVC QGD ++ L T+ R L V +VI N
Sbjct: 400 GAAVAA----PDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVIFAN 443
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 45.5 bits (108), Expect = 4e-06
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PR L +G G MG GL A+ AA P VV + GD +F + EL T+ L
Sbjct: 416 PRRWLTSGGLGAMGFGLPAAIGAAAA----NPDAIVVDIDGDGSFIMNIQELATIHVENL 471
Query: 169 PVILVILYN 177
PV +++L N
Sbjct: 472 PVKIMVLNN 480
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 44.3 bits (105), Expect = 1e-05
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
P + +G GTMG GL AL + H P V+ + GD++ E+ T V+Y L
Sbjct: 420 PNRWMTSGGLGTMGYGLPAALGVQI--AH--PDALVIDIAGDASIQMCIQEMSTAVQYNL 475
Query: 169 PVILVILYN 177
PV + IL N
Sbjct: 476 PVKIFILNN 484
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 42.1 bits (99), Expect = 6e-05
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 57 SAVEKMIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGAN-TMDIGRSLLLNNLPRHRLDA 115
++ K P+ + V + +IV + N TM R + A
Sbjct: 334 DSISKQENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARHFRASGEQTFIFSA 393
Query: 116 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIL 175
G+MG+G+ ++ A+ + ++V+ GD F + MEL T +Y LPV ++I
Sbjct: 394 -WLGSMGIGVPGSVGASFAVEN---KRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIY 449
Query: 176 YN 177
N
Sbjct: 450 NN 451
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 40.9 bits (96), Expect = 1e-04
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 91 GEGANTMDIGRSLL-------LNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 143
GE T D+G+ + P + +G GTMG GL A+ A L P +
Sbjct: 390 GEAIVTTDVGQHQMWAAQYYPFKT-PDKWVTSGGLGTMGFGLPAAIGAQLA----KPDET 444
Query: 144 VVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
VV + GD F + EL + LPV +VIL N
Sbjct: 445 VVAIVGDGGFQMTLQELSVIKELSLPVKVVILNN 478
>gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This
family consists of examples of phosphonopyruvate an
decarboxylase enzyme that produces phosphonoacetaldehyde
(Pald), the second step in the biosynthesis
phosphonate-containing compounds. Since the preceding
enzymate step, PEP phosphomutase (AepX, TIGR02320)
favors the substrate PEP energetically, the
decarboxylase is required to drive the reaction in the
direction of phosphonate production. Pald is a precursor
of natural products including antibiotics like bialaphos
and phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for AepX. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP).
Length = 361
Score = 40.0 bits (94), Expect = 2e-04
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 24/91 (26%)
Query: 73 YAAIHAVQVSIPDNCIIVGEGANTMDIGRSL------LLNNLPRHRLDAGTFGTMG---- 122
AI A+ +PDN +IV + T R L + R L T G+MG
Sbjct: 175 EEAIAAILDHLPDNTVIV---STTGKTSRELYELRDRIGQGHARDFL---TVGSMGHASQ 228
Query: 123 VGLGFALAAALYCNHYAPGKRVVCVQGDSAF 153
+ LG ALA P +RVVC+ GD A
Sbjct: 229 IALGLALAR--------PDQRVVCLDGDGAA 251
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 40.2 bits (94), Expect = 3e-04
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 110 RHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLP 169
R + +G GTMG G+ A+ A + P K V+ GD F + EL L Y++P
Sbjct: 409 RQLVTSGGLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTNQELAILNIYKVP 464
Query: 170 VILVILYN 177
+ +V+L N
Sbjct: 465 IKVVMLNN 472
>gnl|CDD|226684 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha
and beta subunits [Energy production and conversion].
Length = 640
Score = 40.0 bits (94), Expect = 3e-04
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 98 DIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG 157
DIG L P T MG +G A + A K++V V GDS F SG
Sbjct: 409 DIGCYTLGILPPL-NTVDTTTM-MGSSIGIAGGLSF-----ASTKKIVAVIGDSTFFHSG 461
Query: 158 ME-LETLVRYRLPVILVILYN 177
+ L V + +++V+L N
Sbjct: 462 ILALINAVYNKANILVVVLDN 482
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 39.2 bits (92), Expect = 6e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 118 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
+G++G L AL AAL AP +RV+ GD + + E+ T++R+ L I+ +L N
Sbjct: 410 WGSIGYTLPAALGAALA----APDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNN 465
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 38.7 bits (90), Expect = 8e-04
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 100 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 159
L PRH ++ G G LG+ + AAL P + VV + GD F F E
Sbjct: 400 AAQFLHVFKPRHWINCGQAGP----LGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEE 455
Query: 160 LETLVRYRLPVILVILYN 177
L ++++P I V++ N
Sbjct: 456 LAVGAQFKIPYIHVLVNN 473
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 38.4 bits (90), Expect = 0.001
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 47 KVGGNMRGVDSAVEKMIQDESVPLNYYAAIHAVQVSIPDNCII---VGEGANTMDIGRSL 103
++ + +E + P+N + +PDN I+ G AN R L
Sbjct: 343 RIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPDNAILTADSGSCANWY--ARDL 400
Query: 104 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM-ELET 162
+ L +GT TMG + +A+AA H P + V+ + GD A +GM EL T
Sbjct: 401 RMRRGMMASL-SGTLATMGPAVPYAIAAKF--AH--PDRPVIALVGDGAMQMNGMAELIT 455
Query: 163 LVRY 166
+ +Y
Sbjct: 456 VAKY 459
>gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.
Length = 578
Score = 38.0 bits (89), Expect = 0.001
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 105 LNNLPRHRLDAGTF--GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 162
+ R R+ G+F G+M L A+ A L PG++V+ + GD EL T
Sbjct: 393 ITPNGRRRV-IGSFRHGSMANALPHAIGAQLA----DPGRQVISMSGDGGLSMLLGELLT 447
Query: 163 LVRYRLPVILVILYN 177
+ Y LPV +V+ N
Sbjct: 448 VKLYDLPVKVVVFNN 462
>gnl|CDD|206520 pfam14352, DUF4402, Domain of unknown function (DUF4402). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 155 and 182 amino
acids in length.
Length = 129
Score = 36.6 bits (85), Expect = 0.001
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 79 VQVSIPDNCIIVGEGANTMDIGRSLLLNNLPR-HRLDAGTFGTMGVG 124
V V++P + G G NTM + +L LD+G T VG
Sbjct: 59 VTVTLPATITLTGSGGNTMTVTTFTGSTSLTLSTILDSGGSATFNVG 105
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 37.7 bits (88), Expect = 0.002
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 28/171 (16%)
Query: 11 KEEEKEGDEEVKRVGARRRIRMRDLIQRAKVEEGEMKVGGNMRGVDSAVEKMIQDESVPL 70
+E K +R RRR +R+L R + E + +E++ +
Sbjct: 340 EERLKSLASAERRRARRRRAAVREL--RIRQEAAKRA----------EIERLKDRGPITP 387
Query: 71 NYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV--GLGFA 128
Y + + + IV E + ++ G++ G GLG+A
Sbjct: 388 AYLSY--CLGEVADEYDAIVTE--------YPFVPRQARLNK--PGSYFGDGSAGGLGWA 435
Query: 129 LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLV--RYRLPVILVILYN 177
L AAL P + V+ GD +F F E V RY LPV++V+ N
Sbjct: 436 LGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNN 486
>gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl
subfamily, TPP-binding module; composed of proteins
similar to Escherichia coli glyoxylate carboligase
(Gcl). E. coli glyoxylate carboligase, plays a key role
in glyoxylate metabolism where it catalyzes the
condensation of two molecules of glyoxylate to give
tartronic semialdehyde and carbon dioxide. This enzyme
requires TPP, magnesium ion and FAD as cofactors.
Length = 202
Score = 36.9 bits (85), Expect = 0.002
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PRH ++ G G LG+ + AAL P ++VV + GD F F EL ++R+
Sbjct: 47 PRHWINCGQAGP----LGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEELAVGAQHRI 102
Query: 169 PVILVILYN 177
P I V++ N
Sbjct: 103 PYIHVLVNN 111
>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional.
Length = 591
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PRH ++ G G LG+ + AAL P + VV + GD F F EL ++ L
Sbjct: 409 PRHWINCGQAGP----LGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNL 464
Query: 169 PVILVILYN 177
P I V++ N
Sbjct: 465 PYIHVLVNN 473
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 37.2 bits (86), Expect = 0.003
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PRH ++ G G LG+ + AAL P + VV + GD F F EL ++ +
Sbjct: 408 PRHWINCGQAGP----LGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNI 463
Query: 169 PVILVILYN 177
P I V++ N
Sbjct: 464 PYIHVLVNN 472
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 36.5 bits (85), Expect = 0.005
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 119 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIL 175
G +G GL A+ AAL PG++ V + GD + EL T V+ +++V++
Sbjct: 405 GGIGQGLAMAIGAALA----GPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLM 457
>gnl|CDD|239468 cd03371, TPP_PpyrDC, Thiamine pyrophosphate (TPP) family, PpyrDC
subfamily, TPP-binding module; composed of proteins
similar to phosphonopyruvate decarboxylase (PpyrDC)
proteins. PpyrDC is a homotrimeric enzyme which
functions in the biosynthesis of C-P compounds such as
bialaphos tripeptide in Streptomyces hygroscopicus.
These proteins require TPP and divalent metal cation
cofactors.
Length = 188
Score = 35.4 bits (82), Expect = 0.006
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 73 YAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLL---NNLPRHRLDAGTFGTMG----VGL 125
AI V P +V + T R L H D T G+MG + L
Sbjct: 2 EDAIEIVLSRAPATAAVV---STTGMTSRELFELRDRPGGGHAQDFLTVGSMGHASQIAL 58
Query: 126 GFALAAALYCNHYAPGKRVVCVQGDSAF 153
G ALA P ++VVC+ GD A
Sbjct: 59 GIALAR--------PDRKVVCIDGDGAA 78
>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia
family. A family of closely related, thiamine
pyrophosphate-dependent enzymes includes indolepyruvate
decarboxylase (EC 4.1.1.74), phenylpyruvate
decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC
4.1.1.1), branched-chain alpha-ketoacid decarboxylase,
etc.. Members of this group of homologs may overlap in
specificity. Within the larger family, this model
represents a clade of bacterial indolepyruvate
decarboxylases, part of a pathway for biosynthesis of
the plant hormone indole-3-acetic acid. Typically, these
species interact with plants, as pathogens or as
beneficial, root-associated bacteria [Central
intermediary metabolism, Other].
Length = 539
Score = 36.0 bits (83), Expect = 0.007
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 125 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
+G+ L AA P +RV+ + GD + + EL +++R + I+++L N
Sbjct: 406 IGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNN 458
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 34.5 bits (79), Expect = 0.021
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 116 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIL 175
G + MG G+ + A GKR++ + GD AF +G EL R + I VIL
Sbjct: 400 GYYAGMGFGVPAGIGAQC-----TSGKRILTLVGDGAFQMTGWELGNCRRLGIDPI-VIL 453
Query: 176 YN 177
+N
Sbjct: 454 FN 455
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 33.0 bits (76), Expect = 0.066
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 109 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 168
PR L++G GTM G+A+ AA+ P K V + GD F + EL T +
Sbjct: 437 PRTWLNSGGLGTM----GYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGI 492
Query: 169 PVILVILYN 177
P+ + ++ N
Sbjct: 493 PIKVALINN 501
>gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB. FlhB and its
functionally equivalent orthologs, from among a larger
superfamily of proteins involved in type III protein
export systems, are specifically involved in flagellar
protein export. The seed members are restricted and the
trusted cutoff is set high such that the proteins
gathered by this model play roles specifically related
to flagellar structures. Full-length homologs scoring
below the trusted cutoff are involved in peptide export
but not necessarily in the creation of flagella
[Cellular processes, Chemotaxis and motility].
Length = 347
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 11 KEE--EKEGDEEVKRVGARRRIRMRDLIQRAKVEE 43
K+E + EGD EVK R R R+ +R ++E
Sbjct: 221 KDELKQSEGDPEVK---GRIRQMQREAARRRMMQE 252
>gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase.
Length = 578
Score = 30.8 bits (70), Expect = 0.33
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Query: 118 FGTMG--VG--LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILV 173
+G++G VG LG+A AA P KRV+ GD +F + ++ T++R I+
Sbjct: 427 YGSIGWSVGATLGYAQAA--------PDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIF 478
Query: 174 ILYN 177
++ N
Sbjct: 479 LINN 482
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 30.8 bits (70), Expect = 0.34
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 75 AIHAVQVSIPDNCIIVGEGANTM--DIGRSLLLNNLP-RHRLDAGTFGTMGVGLGFALAA 131
I AVQ +I D+ ++V A ++ D+ + L +P + L+ G F MG + +A
Sbjct: 400 VIGAVQRTISDDSVVVC-AAGSLPGDLHK-LWRAGVPGTYHLEYG-FSCMG----YEIAG 452
Query: 132 ALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
L P + V + GD ++ EL T V +I+V+L N
Sbjct: 453 GLGAKAAEPDREVYVMVGDGSYMMLNSELATSVMLGKKIIVVLLDN 498
>gnl|CDD|171497 PRK12436, PRK12436, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 305
Score = 30.7 bits (69), Expect = 0.36
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 76 IHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYC 135
IH V++ I+ GA +D+ R L +NL G G++G ALY
Sbjct: 87 IHITGVTVTGTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVG--------GALYM 138
Query: 136 NHYAPGKRVVCVQGDSAFGFSGMELETLVR 165
N A G + V ++ EL TL +
Sbjct: 139 NAGAYGGEISFVLTEAVVMTGDGELRTLTK 168
>gnl|CDD|238961 cd02003, TPP_IolD, Thiamine pyrophosphate (TPP) family, IolD
subfamily, TPP-binding module; composed of proteins
similar to Rhizobium leguminosarum bv. viciae IolD. IolD
plays an important role in myo-inositol catabolism.
Length = 205
Score = 30.0 bits (68), Expect = 0.46
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 111 HRL-DAGTFGTMGVGLGFA-----LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLV 164
H+L A T G + G++ +AA L P + V + GD ++ E+ T V
Sbjct: 30 HKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLHSEIVTAV 89
Query: 165 RYRLPVILVILYN 177
+ L +I+V+ N
Sbjct: 90 QEGLKIIIVLFDN 102
>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 363
Score = 30.3 bits (69), Expect = 0.51
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 11 KEE--EKEGDEEVKRVGARRRIRMRDLIQRAKVEE 43
K+E + EGD EVK +R R R++ +R + +
Sbjct: 228 KDEYKQSEGDPEVK---SRIRQMQREIARRRMMSD 259
>gnl|CDD|234170 TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase,
alpha subunit. Indolepyruvate ferredoxin oxidoreductase
(IOR) is an alpha 2/beta 2 tetramer related to ketoacid
oxidoreductases for pyruvate (1.2.7.1, POR),
2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate
(1.2.7.7, VOR). These multi-subunit enzymes typically
are found in anaerobes and are inactiviated by oxygen.
IOR in Pyrococcus acts in fermentation of all three
aromatic amino acids, following removal of the amino
group by transamination. In Methanococcus maripaludis,
by contrast, IOR acts in the opposite direction, in
pathways of amino acid biosynthesis from phenylacetate,
indoleacetate, and p-hydroxyphenylacetate. In M.
maripaludis and many other species, iorA and iorB are
found next to an apparent phenylacetate-CoA ligase.
Length = 595
Score = 30.1 bits (68), Expect = 0.66
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 121 MGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME-LETLVRYRLPVILVILYN 177
MG +G +A+ L +R+V GDS F +G+ L V + + +VIL N
Sbjct: 405 MGASIG--VASGLS--KAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDN 458
>gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed.
Length = 287
Score = 30.0 bits (67), Expect = 0.66
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 7 KIRKKEEEKEGDEEVKRVGARRRIRMRDLIQRAKVEEGEMKVGGNMR-GVDSAVEKMIQD 65
K+ KE +K+ DE K+ G + L+++ ++E +K G + + A+EK I D
Sbjct: 67 KVEDKEVDKKYDEMKKQYGDQ----FDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITD 122
Query: 66 ESVPLNYYAAIHAVQVSIPD 85
+ + NY I A + + D
Sbjct: 123 KELKDNYKPEIKASHILVKD 142
>gnl|CDD|176866 cd07824, SRPBCC_6, Ligand-binding SRPBCC domain of an
uncharacterized subfamily of proteins. Uncharacterized
group of the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily. SRPBCC domains have a deep hydrophobic
ligand-binding pocket and they bind diverse ligands.
SRPBCC domains include the steroidogenic acute
regulatory protein (StAR)-related lipid transfer
(START) domains of mammalian STARD1-STARD15, the
C-terminal catalytic domains of the alpha oxygenase
subunit of Rieske-type non-heme iron aromatic
ring-hydroxylating oxygenases (RHOs_alpha_C), Class I
and II phosphatidylinositol transfer proteins (PITPs),
Bet v 1 (the major pollen allergen of white birch,
Betula verrucosa), CoxG, CalC, and related proteins.
Other members of the superfamily include PYR/PYL/RCAR
plant proteins, the aromatase/cyclase (ARO/CYC) domains
of proteins such as Streptomyces glaucescens
tetracenomycin, and the SRPBCC domains of Streptococcus
mutans Smu.440 and related proteins.
Length = 146
Score = 29.2 bits (66), Expect = 0.67
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 1 MKEWWGKIRKKEEEKEGDEEVKRVGARRRIRMR 33
+WW + + E + GDE +GARRR R
Sbjct: 26 WPDWWPGVERVVELEPGDEA--GIGARRRYTWR 56
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 29.0 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 123 VGLGFALAAALYCNHYAPGKRVVCVQ--GDSAFGFSGMELETLVRYRLP 169
V +G A Y +V+ + GD+AF G+ ETL LP
Sbjct: 121 VVMGKTRAKQDYRGDG-ERDKVLPILIHGDAAFAGQGVVYETLNLSNLP 168
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 29.2 bits (66), Expect = 1.3
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 96 TMDIG-------RSLLLNNLPRHRLDAGTF--GTMGVGLGFALAAALYCNHYAPGKRVVC 146
T D+G R L +N + RL G+F G+M A+ AL PG++VV
Sbjct: 379 TCDVGTPTVWAARYLKMNG--KRRL-LGSFNHGSMAN----AMPQALGAQAAHPGRQVVA 431
Query: 147 VQGDSAFGFSGMELETLVRYRLPVILVILYN 177
+ GD F + +LV+ +LPV +V+ N
Sbjct: 432 LSGDGGFSMLMGDFLSLVQLKLPVKIVVFNN 462
>gnl|CDD|182606 PRK10637, cysG, siroheme synthase; Provisional.
Length = 457
Score = 28.2 bits (63), Expect = 2.5
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 141 GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILV 173
GKRVV ++G F F G ELETL +P +V
Sbjct: 293 GKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVV 327
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum
hydroxylase 1. Members of this protein family show full
length homology to the molybdenum-containing aldehyde
oxido-reductase of Desulfovibrio gigas. Members,
however, are found only within species that have, and
near those genes that encode, a set of predicted
accessory proteins for selenium-dependent molybdenum
hydroxylases. The best known examples of such enzymes
are forms of xanthine dehydrogenase and purine
hydroxylase; this family appears to be another such
enzyme.
Length = 848
Score = 27.5 bits (61), Expect = 4.8
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 57 SAVEKMIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAG 116
S + + D+ P+++ +A QV I D+ V + D+GR++ N L+
Sbjct: 697 SITDPLNSDKENPVSHVGYGYATQVVILDDAGKVEKVVAAYDVGRAINPLN-----LEGQ 751
Query: 117 TFGTMGVGLGFAL 129
G + +GLG+AL
Sbjct: 752 IEGGIVMGLGYAL 764
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 27.5 bits (61), Expect = 5.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 115 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF--SGMELETLVRYRLPVIL 172
+G G + +GFA+ CN KRV+CV GD +F +G+ + + R P+ +
Sbjct: 761 SGIDGLLSTAIGFAVG----CN-----KRVLCVVGDISFLHDTNGLSILSQRIARKPMTI 811
Query: 173 VILYN 177
+++ N
Sbjct: 812 LVINN 816
>gnl|CDD|233217 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein
PstA. This model describes PtsA, one of a pair of
permease proteins in the ABC (high affinity) phosphate
transporter. In a number of species, this permease is
fused with the PtsC protein (TIGR02138). In the model
bacterium Escherichia coli, this transport system is
induced when the concentration of extrallular inorganic
phosphate is low. A constitutive, lower affinity
transporter operates otherwise [Transport and binding
proteins, Anions].
Length = 271
Score = 27.2 bits (61), Expect = 5.3
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 117 TFGTMGVGLGFALAAALYCNHYAPGKRVV 145
+ + + + AA+Y YA R
Sbjct: 63 ILLAIVIAVPLGIGAAIYLAEYANESRFT 91
>gnl|CDD|180796 PRK07023, PRK07023, short chain dehydrogenase; Provisional.
Length = 243
Score = 26.5 bits (59), Expect = 7.9
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 124 GLGFALAAALYCNHYAPGKRVVCV 147
GLG ALA L PG V+ V
Sbjct: 12 GLGAALAEQL----LQPGIAVLGV 31
>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9). Rab9 is found in late
endosomes, together with mannose 6-phosphate receptors
(MPRs) and the tail-interacting protein of 47 kD
(TIP47). Rab9 is a key mediator of vesicular transport
from late endosomes to the trans-Golgi network (TGN) by
redirecting the MPRs. Rab9 has been identified as a key
component for the replication of several viruses,
including HIV1, Ebola, Marburg, and measles, making it a
potential target for inhibiting a variety of viruses.
GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs) interact
with GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 170
Score = 26.4 bits (58), Expect = 8.0
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 88 IIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 123
I++G+G +G+S L+N ++ D F T+GV
Sbjct: 9 ILLGDGG----VGKSSLMNRYVTNKFDTQLFHTIGV 40
>gnl|CDD|148208 pfam06465, DUF1087, Domain of Unknown Function (DUF1087).
Members of this family are found in various chromatin
remodelling factors and transposases. Their exact
function is, as yet, unknown.
Length = 66
Score = 24.8 bits (54), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 4 WWGKIRKKEEEKEGDEEVKRVGARRRIR 31
+W K+ K E+ EE K +G +R R
Sbjct: 26 YWEKLLKHHYEQLRAEEEKALGKGKRSR 53
>gnl|CDD|227004 COG4657, RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit
RnfA [Energy production and conversion].
Length = 193
Score = 26.2 bits (58), Expect = 9.5
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 83 IPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALY 134
I NC ++G LLN H G LGF+L L+
Sbjct: 110 ITTNCAVLG----------VALLNINEGHNFLQSVVYGFGAALGFSLVMVLF 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.411
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,417,736
Number of extensions: 898985
Number of successful extensions: 1266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 114
Length of query: 177
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 86
Effective length of database: 6,901,388
Effective search space: 593519368
Effective search space used: 593519368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)