RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15960
(177 letters)
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter
formigenes [TaxId: 847]}
Length = 183
Score = 69.2 bits (168), Expect = 8e-16
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 7/111 (6%)
Query: 69 PLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLG 126
+NY ++ V+ + N +V EGAN +D R ++ PR RLD+GT+G MG+G+G
Sbjct: 5 MMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMG 64
Query: 127 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
GK V+ V+GDSAFGFSGMELET+ RY LPV ++I+ N
Sbjct: 65 -----YCVAAAAVTGKPVIAVEGDSAFGFSGMELETICRYNLPVTVIIMNN 110
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 60.6 bits (146), Expect = 2e-12
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 67 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGL 125
S PL + + + + +++ E G + I ++ N + + +G++G
Sbjct: 2 STPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPN--NTYGISQVLWGSIGFTT 59
Query: 126 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G L AA P KRV+ GD + + E+ T++R+ L L +L N
Sbjct: 60 GATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNN 111
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 204
Score = 58.7 bits (141), Expect = 9e-12
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 69 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 128
PL V+ + N ++ E ++ + + L N +G +G + A
Sbjct: 2 PLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPN-GARVEYEMQWGHIGWSVPAA 60
Query: 129 LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
A+ P +R + + GD +F + E+ +VR +LPVI+ ++ N
Sbjct: 61 FGYAVGA----PERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINN 105
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 229
Score = 50.7 bits (120), Expect = 1e-08
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 69 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 128
L +Y +A+ ++ I + N+ L + F TMG+ +
Sbjct: 2 DLQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGG 61
Query: 129 LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
L A +V + GD AF + ++ T VRY +PVI V+ N
Sbjct: 62 LGAKNTYPDR----QVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSN 106
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 208
Score = 47.5 bits (112), Expect = 1e-07
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 69 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 127
+ AI + II G + M + + G +GF
Sbjct: 2 AIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGL-----GAMGF 56
Query: 128 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
L AA+ + P VV + GD +F + EL T+ LPV +++L N
Sbjct: 57 GLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNN 106
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 183
Score = 47.0 bits (110), Expect = 1e-07
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 5/115 (4%)
Query: 63 IQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMG 122
+ ++ L+ + P+N I + E +T L P G
Sbjct: 5 VDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLG- 63
Query: 123 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
FAL AA+ P ++V+ V GD + +S L T +Y +P I VI+ N
Sbjct: 64 ----FALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNN 114
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 196
Score = 46.8 bits (110), Expect = 2e-07
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 69 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 128
L +Q I II+ + + L L + + +G++G L A
Sbjct: 4 SLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPA-DVNFIVQPLWGSIGYTLAAA 62
Query: 129 LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
A C + RV+ + GD A + EL +++R + I+++L N
Sbjct: 63 FGAQTACPNR----RVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNN 107
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 198
Score = 44.5 bits (104), Expect = 1e-06
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 69 PLNYYAAIHAV-----QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 123
+ + I ++ + + P IV + G + P L + + G
Sbjct: 7 GMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGY 66
Query: 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G+ AA+ P + + GD F + +LET+ R LP++ V++ N
Sbjct: 67 GIP----AAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNN 116
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 228
Score = 43.0 bits (100), Expect = 5e-06
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 66 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 124
+ PL Y + AV + I + G ++ R L L RH +
Sbjct: 2 QEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHI-----TSNLFAT 56
Query: 125 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
+G + A+ P ++V + GD + +L T V+Y LPVI V+ N
Sbjct: 57 MGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTN 109
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 192
Score = 35.7 bits (81), Expect = 0.001
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 67 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGL 125
L+ + A+Q + + + + G+ + I R L + + G
Sbjct: 2 QFALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTM----- 56
Query: 126 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVILYN 177
G AL A+ P ++VV V GD F S MELET VR + V+ +I +
Sbjct: 57 GVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVD 108
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 25.7 bits (55), Expect = 3.3
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 126 GFALAAALYCNHYAPGKRVVCVQGDSA 152
G A+A AL P VV + D
Sbjct: 256 GGAVAGALRVAKANPDAVVVAIICDRG 282
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 25.6 bits (55), Expect = 3.5
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 126 GFALAAAL-YCNHYAPGKRVVCVQGDSA 152
G +A A+ G+R V + DS
Sbjct: 309 GSTVAVAVKAAQELQEGQRCVVILPDSV 336
>d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus
[TaxId: 4844]}
Length = 265
Score = 25.2 bits (54), Expect = 5.3
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 128 ALAAALYCNHYAPGKRVVCVQGDSAF 153
+AA YC PG + CVQ
Sbjct: 18 GIAATAYCRSVVPGNKWDCVQCQKWV 43
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 25.1 bits (54), Expect = 5.5
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 126 GFALAAAL-YCNHYAPGKRVVCVQGDSA 152
G +AAAL P RVV V D A
Sbjct: 259 GANVAAALKVAQKLGPDARVVTVAPDHA 286
>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492
{Helicobacter pylori [TaxId: 210]}
Length = 221
Score = 24.9 bits (54), Expect = 6.3
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 67 SVPLNYYAAIHAVQVSIPDNCIIVG 91
PL++ IH VQ P N +VG
Sbjct: 10 VTPLDFNYPIHIVQA--PQNHHVVG 32
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 24.9 bits (53), Expect = 6.8
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 126 GFALAAAL-YCNHYAPGKRVVCVQGDSA 152
G + AAL PGKRV C+ D
Sbjct: 265 GGIVWAALQVARELGPGKRVACISPDGG 292
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 24.5 bits (52), Expect = 7.8
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 126 GFALAAALYCNHYAPGKRVVCV 147
+ AAA KR+ +
Sbjct: 280 CLSFAAARAMKEKLKNKRIGII 301
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 24.5 bits (52), Expect = 8.9
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 124 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM 158
L A H G+R+ + + F G+
Sbjct: 286 ALALAGMKKYIALHNIRGERLAHILSGANVNFHGL 320
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.411
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 690,350
Number of extensions: 30832
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 27
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)