BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15967
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 55/149 (36%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLG 68
T L F VF PGDYI R+G +GK+MY ++ G ++V+ + + LS GS FGE+
Sbjct: 95 TKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEI----- 147
Query: 69 VDLGRITSFCSKGYEIPNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVR 128
S ++G RRTA+VR
Sbjct: 148 -------SLLTRG----------------------------------------RRTASVR 160
Query: 129 SLGYSDLFCLAKRDLWETLADYPEARHSL 157
+ YS L+ L+ + E L +YP R +
Sbjct: 161 ADTYSRLYSLSVDNFNEVLEEYPMMRRAF 189
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 5/56 (8%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVAD-DEETVLATLSAGSVFGEV 63
T L F VF PGDYI R+G +GK+MY ++ G ++V+ ++ET LA GS FGE+
Sbjct: 96 TKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLAD---GSYFGEI 148
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
T L F VF PGDYI R+G +GK+MY ++ G ++V+ + + LS GS FGE+
Sbjct: 96 TKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEI 148
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
T L F VF PGDYI R+G +GK+MY ++ G ++V+ + + LS GS FGE+
Sbjct: 93 TKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEI 145
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 5/56 (8%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVAD-DEETVLATLSAGSVFGEV 63
T L F VF PGDYI R+G +GK+MY ++ G ++V+ ++ET LA GS FGE+
Sbjct: 90 TKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLAD---GSYFGEI 142
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 5/56 (8%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVAD-DEETVLATLSAGSVFGEV 63
T L F VF PGDYI R+G +GK+MY ++ G ++V+ ++ET LA GS FGE+
Sbjct: 90 TKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLAD---GSYFGEI 142
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
T L F VF PGDYI R+G +GK+MY ++ G ++V+ + + LS GS FGE+
Sbjct: 93 TKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEI 145
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
T L F VF PGDYI R+G +GK+MY ++ G ++V+ + + LS GS FGE+
Sbjct: 93 TKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEI 145
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
T L F VF PGDYI R+G +GK+MY ++ G ++V+ + + LS GS FGE+
Sbjct: 91 TKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEI 143
>pdb|3SWY|A Chain A, Cnga3 626-672 Containing Clz Domain
pdb|3SWY|B Chain B, Cnga3 626-672 Containing Clz Domain
pdb|3SWY|C Chain C, Cnga3 626-672 Containing Clz Domain
Length = 46
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 185 ALKDTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQRLALLE 226
AL++ V +L ++L+ LQTRFARL+AEY + Q KMKQRL+ LE
Sbjct: 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 54/143 (37%)
Query: 15 VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRI 74
VF PGDYI R+G VGK+MY ++ G V+ + + L+ GS FGE+
Sbjct: 102 VFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKEM--KLTDGSYFGEI----------- 148
Query: 75 TSFCSKGYEIPNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134
+KG RRTA+VR+ Y
Sbjct: 149 -CLLTKG----------------------------------------RRTASVRADTYCR 167
Query: 135 LFCLAKRDLWETLADYPEARHSL 157
L+ L+ + E L +YP R +
Sbjct: 168 LYSLSVDNFNEVLEEYPMMRRAF 190
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
T L F VF PGDYI R+G +GK+ Y ++ G ++V+ + LS GS FGE+
Sbjct: 93 TKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLTKGNKE--XKLSDGSYFGEI 145
>pdb|3SWF|A Chain A, Cnga1 621-690 Containing Clz Domain
pdb|3SWF|B Chain B, Cnga1 621-690 Containing Clz Domain
pdb|3SWF|C Chain C, Cnga1 621-690 Containing Clz Domain
Length = 74
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 34/43 (79%)
Query: 185 ALKDTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQRLALLEQ 227
L++ V R++++++ LQTRFAR++AEY S Q K+KQRL +E+
Sbjct: 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEK 46
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 10 TALNF-VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLAT-LSAGSVFGEV 63
T L F VF P DY+ ++G G M+ +++G ++++ D V+AT LS GS FGE+
Sbjct: 92 TLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSD--GVIATSLSDGSYFGEI 145
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 17 SPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFG 61
+PG+++ R+GD + +Y V G + V+ D+ TVLA L G + G
Sbjct: 104 APGEFLIRQGDALQAIYFVCSGSMEVLKDN--TVLAILGKGDLIG 146
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVVADD----EETVLATLSAGSVFGE 62
+ G+YI R+G G +I+ +GK+NV +D + L TL G FGE
Sbjct: 185 YENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGE 235
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 22 ICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
I ++GDVG +Y+++ GK+ V E L T+ G VFGE+
Sbjct: 73 IIKEGDVGSLVYVMEDGKVEVTK--EGVKLCTMGPGKVFGEL 112
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 17 SPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
+PGD I G+ + V G L V+ DDE V+A L G VFG+V
Sbjct: 56 APGDLIYHAGESVDSLCFVVSGSLEVIQDDE--VVAILGKGDVFGDV 100
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 15 VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
++ PG+ I R+GD G+ Y+++ G ++ V+ + V+ L FGEV
Sbjct: 152 IYQPGETIIREGDQGENFYLIEYGAVD-VSKKGQGVINKLKDHDYFGEV 199
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 19 GDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
G I ++GD G Y+V++G ++ +D + + + GS FGE+
Sbjct: 38 GATIIKQGDQGDYFYVVEKGTVDFYVNDNK--VNSSGPGSSFGEL 80
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 15 VFSPGDYICRKGDVGKEMYIVKRGKLNVV---ADDEETVLATLSAGSVFGEV 63
++ G I +GD+G+ +Y+V GK+ + +E LA L G +FGE+
Sbjct: 26 LYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEM 77
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 22 ICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
I ++GDVG +Y+++ GK+ V E L T+ G VFGE+
Sbjct: 57 IIKEGDVGSLVYVMEDGKVEVTK--EGVKLCTMGPGKVFGEL 96
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLG 68
F G+ + ++GD G Y++ +G+++V ++E ++ G FGE+ + G
Sbjct: 63 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA--TSVGEGGSFGELALIYG 113
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLG 68
F G+ + ++GD G Y++ +G+++V ++E ++ G FGE+ + G
Sbjct: 65 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA--TSVGEGGSFGELALIYG 115
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLG 68
F G+ + ++GD G Y++ +G+++V ++E ++ G FGE+ + G
Sbjct: 67 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA--TSVGEGGSFGELALIYG 117
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLG 68
F G+ + ++GD G Y++ +G+++V ++E ++ G FGE+ + G
Sbjct: 66 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWAT--SVGEGGSFGELALIYG 116
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLG 68
F G+ + ++GD G Y++ +G+++V ++E ++ G FGE+ + G
Sbjct: 73 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWAT--SVGEGGSFGELALIYG 123
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 19 GDYICRKGDVGKEMYIVKRGKLNV---VADDEETVLATLSAGSVFGEV-------RHVLG 68
GD + +GD G +Y+V GK+ + D E LA + + GE+ R G
Sbjct: 36 GDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENXLAVVGPSELIGELSLFDPGPRTATG 95
Query: 69 VDLGRITSFCSKGYEIPNTKWLNL-------IVKAQPMKLRKT 104
L + ++ WLN+ +++A +LRKT
Sbjct: 96 TALTEVKLLALGHGDL--QPWLNVRPEVATALLRAVARRLRKT 136
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 19 GDYICRKGDVGKEMYIVKRGKLNVVADD-----EETVLATLSAGSVFGE 62
G + R+GD+G Y V G L+V + + + TL G+ FGE
Sbjct: 73 GITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE 121
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 19 GDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
G + +G+ G YI+ +G +NVV + V+ TL G FG++
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVVIYG-KGVVCTLHEGDDFGKL 412
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 19 GDYICRKGDVGKEMYIVKRGKLNVVADD-----EETVLATLSAGSVFGE 62
G + R+GD+G Y V G L+V + + + TL G+ FGE
Sbjct: 73 GITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE 121
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 19 GDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
G + +G+ G YI+ +G +NVV + V+ TL G FG++
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVVIYG-KGVVCTLHEGDDFGKL 412
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 46 DEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQPMKLRKTV 105
D+ V++ A S+F V H+ R +++ + + P K+ + + + +K +
Sbjct: 309 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA-PTVKFTSFLCSILKNEFKKDL 367
Query: 106 LNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGC 162
+LE G T N+RT+ V+ + L D+ D+P H +++ G
Sbjct: 368 ----PILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV-HEVLQIGV 419
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 46 DEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQPMKLRKTV 105
D+ V++ A S+F V H+ R +++ + + P K+ + + + +K +
Sbjct: 258 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA-PTVKFTSFLCSILKNEFKKDL 316
Query: 106 LNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGC 162
+LE G T N+RT+ V+ + L D+ D+P H +++ G
Sbjct: 317 ----PILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV-HEVLQIGV 368
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 46 DEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQPMKLRKTV 105
D+ V++ A S+F V H+ R +++ + + P K+ + + + +K +
Sbjct: 258 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA-PTVKFTSFLCSILKNEFKKDL 316
Query: 106 LNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGC 162
+LE G T N+RT+ V+ + L D+ D+P H +++ G
Sbjct: 317 ----PILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV-HEVLQIGV 368
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 46 DEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQPMKLRKTV 105
D+ V++ A S+F V H+ R +++ + + P K+ + + + +K +
Sbjct: 3 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA-PTVKFTSFLCSILKNEFKKDL 61
Query: 106 LNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERG 161
+LE G T N+RT+ V+ + L D+ D+P H +++ G
Sbjct: 62 ----PILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV-HEVLQIG 112
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 46 DEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQPMKLRKTV 105
D+ V++ A S+F V H+ R +++ + + P K+ + + + +K +
Sbjct: 3 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA-PTVKFTSFLCSILKNEFKKDL 61
Query: 106 LNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERG 161
+LE G T N+RT+ V+ + L D+ D+P H +++ G
Sbjct: 62 ----PILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV-HEVLQIG 112
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 46 DEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQPMKLRKTV 105
D+ V++ A S+F V H+ R +++ + + P K+ + + + +K +
Sbjct: 3 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA-PTVKFTSFLCSILKNEFKKDL 61
Query: 106 LNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERG 161
+LE G T N+RT+ V+ + L D+ D+P H +++ G
Sbjct: 62 ----PILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV-HEVLQIG 112
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 19 GDYICRKGDVGKEMYIVKRGKLNVVADD-----EETVLATLSAGSVFGE 62
G + R+GD+G Y V G L+V + + + TL G+ FGE
Sbjct: 73 GITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE 121
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 19 GDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
G + +G+ G YI+ +G +NVV + V+ TL G FG++
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVVIYG-KGVVCTLHEGDDFGKL 412
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNV---VADDEETVLATLSAGSVFGEV 63
F G + +G+ G +YI+ GK+ + D E +L + +FGE+
Sbjct: 56 FPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 106
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNV---VADDEETVLATLSAGSVFGEV 63
F G + +G+ G +YI+ GK+ + D E +L + +FGE+
Sbjct: 32 FPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 82
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free
Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free
Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNV---VADDEETVLATLSAGSVFGEV 63
F G + +G+ G +YI+ GK+ + D E +L + +FGE+
Sbjct: 34 FPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNV---VADDEETVLATLSAGSVFGEV 63
F G + +G+ G +YI+ GK+ + D E +L + +FGE+
Sbjct: 31 FPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 81
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNV---VADDEETVLATLSAGSVFGEV 63
F G I +G+ G +YI+ GK+ + D E +L + +FGE+
Sbjct: 54 FPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGEL 104
>pdb|3KWP|A Chain A, Crystal Structure Of Putative Methyltransferase From
Lactobacillus Brevis
Length = 296
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 169 GLLDEEAFRN----SQVEHEALKDTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQRLAL 224
G LD+ FR + V+ A +DT R L H + ++ + Q ++ Q +A
Sbjct: 26 GNLDDXTFRAVKTLTAVDLIAAEDT-RNTQKLLNHFEITTKQISFHEHNTQERIPQLIAK 84
Query: 225 LEQGASVNQATSSKRNSQAEPTH 247
L+QG + Q + + S ++P H
Sbjct: 85 LKQGXQIAQVSDAGXPSISDPGH 107
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNV---VADDEETVLATLSAGSVFGEV 63
F G + +G+ G +YI+ GK+ + D E +L +FGE+
Sbjct: 56 FPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIXGPSDMFGEL 106
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 19 GDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63
G + +G+ G YI+ +G +NVV + V+ TL G FG++
Sbjct: 64 GTVLFNQGEEGTSWYIILKGSVNVVIYG-KGVVCTLHEGDDFGKL 107
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 15 VFSPGDYICRKGDVGKEMYIVKRGKLNVVADD 46
+F+ Y+ R+GD EM + RG+L V D
Sbjct: 33 LFTEKSYLVREGDPVNEMLFIIRGRLESVTTD 64
>pdb|3KKD|A Chain A, Structure Of A Putative Tetr Transcriptional Regulator
(Pa3699) From Pseudomonas Aeruginosa Pa01
pdb|3KKD|B Chain B, Structure Of A Putative Tetr Transcriptional Regulator
(Pa3699) From Pseudomonas Aeruginosa Pa01
pdb|3KKD|C Chain C, Structure Of A Putative Tetr Transcriptional Regulator
(Pa3699) From Pseudomonas Aeruginosa Pa01
Length = 237
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 13/50 (26%)
Query: 142 DLWE---TLADYPEARHSLMERGCQLL----------RKDGLLDEEAFRN 178
DL E LAD P AR SL+ER +L R++ LL E+AFR
Sbjct: 108 DLQEXAAVLADDPGARGSLVERIVELAVQYVQVQLTERREHLLAEQAFRQ 157
>pdb|2QEZ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|E Chain E, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|F Chain F, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
Length = 455
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 41 NVVADDEETVLATLSAGSVFGEVRHVLGVD------------LGRITSFCSKGYEIPNTK 88
N DD + +LA+L G +G V+G++ L + F SK +++P
Sbjct: 165 NHPTDDPDGILASLXEGLTYGIGDAVIGLNPVDDSTDSVVRLLNKFEEFRSK-WDVPTQT 223
Query: 89 WLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGN 121
+ VK Q R+ + IAG+ GN
Sbjct: 224 CVLAHVKTQXEAXRRGAPTGLVFQSIAGSEKGN 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,981,310
Number of Sequences: 62578
Number of extensions: 299302
Number of successful extensions: 770
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 70
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)