Query psy15967
Match_columns 280
No_of_seqs 332 out of 2257
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 17:38:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dn7_A Cyclic nucleotide bindi 99.7 1.8E-17 6.1E-22 140.1 14.2 157 10-243 29-188 (194)
2 1o5l_A Transcriptional regulat 99.7 1.9E-17 6.5E-22 142.8 14.1 171 9-253 20-198 (213)
3 3iwz_A CAP-like, catabolite ac 99.7 2.8E-18 9.5E-23 148.3 8.2 158 10-180 33-226 (230)
4 2fmy_A COOA, carbon monoxide o 99.7 4E-18 1.4E-22 147.1 8.2 166 10-188 26-215 (220)
5 1zyb_A Transcription regulator 99.7 5.8E-18 2E-22 147.9 9.2 158 11-186 43-231 (232)
6 3d0s_A Transcriptional regulat 99.7 1.3E-16 4.5E-21 137.9 17.4 135 10-205 28-165 (227)
7 4ev0_A Transcription regulator 99.7 4.3E-16 1.5E-20 133.2 19.7 131 10-201 21-154 (216)
8 3dv8_A Transcriptional regulat 99.7 5.9E-16 2E-20 132.7 19.9 135 10-205 25-164 (220)
9 2gau_A Transcriptional regulat 99.7 3.3E-16 1.1E-20 135.8 18.4 135 10-205 32-169 (232)
10 3e97_A Transcriptional regulat 99.7 3.5E-17 1.2E-21 141.9 12.1 134 10-206 28-165 (231)
11 1ft9_A Carbon monoxide oxidati 99.7 1.4E-17 4.8E-22 144.0 8.9 165 10-187 22-210 (222)
12 3fx3_A Cyclic nucleotide-bindi 99.7 3.5E-17 1.2E-21 142.4 11.3 135 10-205 33-170 (237)
13 3ryp_A Catabolite gene activat 99.7 4E-16 1.4E-20 132.8 17.4 134 10-204 18-155 (210)
14 2oz6_A Virulence factor regula 99.7 4.2E-16 1.4E-20 132.4 17.2 134 10-204 12-152 (207)
15 3b02_A Transcriptional regulat 99.7 2.5E-17 8.5E-22 139.9 8.7 155 14-188 2-186 (195)
16 3kcc_A Catabolite gene activat 99.7 1.4E-15 4.7E-20 135.5 18.4 134 10-204 68-205 (260)
17 3la7_A Global nitrogen regulat 99.7 2.5E-15 8.5E-20 132.1 19.7 134 11-205 43-181 (243)
18 3mdp_A Cyclic nucleotide-bindi 99.7 6.1E-16 2.1E-20 123.4 14.2 106 10-167 28-139 (142)
19 3e6c_C CPRK, cyclic nucleotide 99.7 3.1E-17 1E-21 144.6 7.0 167 10-189 31-225 (250)
20 3dkw_A DNR protein; CRP-FNR, H 99.7 2.1E-16 7.3E-21 136.1 11.2 133 10-203 31-167 (227)
21 2pqq_A Putative transcriptiona 99.6 1.6E-15 5.4E-20 121.7 12.6 106 10-167 27-135 (149)
22 2zcw_A TTHA1359, transcription 99.6 2.2E-16 7.4E-21 134.6 7.2 159 10-188 4-193 (202)
23 2z69_A DNR protein; beta barre 99.6 2.4E-15 8.1E-20 121.5 12.8 106 10-167 34-143 (154)
24 2ptm_A Hyperpolarization-activ 99.6 1.6E-15 5.5E-20 129.2 11.9 104 10-166 93-196 (198)
25 2bgc_A PRFA; bacterial infecti 99.6 8.2E-15 2.8E-19 128.2 15.3 135 9-205 16-156 (238)
26 3gyd_A CNMP-BD protein, cyclic 99.6 7.6E-15 2.6E-19 124.6 14.5 101 10-162 61-164 (187)
27 3bpz_A Potassium/sodium hyperp 99.6 5.8E-15 2E-19 126.3 12.5 105 10-168 94-198 (202)
28 1vp6_A CNBD, cyclic-nucleotide 99.6 8.7E-15 3E-19 116.5 10.9 102 10-167 33-134 (138)
29 3idb_B CAMP-dependent protein 99.6 7.6E-15 2.6E-19 120.7 9.4 97 10-158 60-158 (161)
30 3ukn_A Novel protein similar t 99.6 1.8E-14 6E-19 124.0 12.0 104 10-167 97-202 (212)
31 4f8a_A Potassium voltage-gated 99.6 4.5E-14 1.5E-18 114.9 13.8 98 10-161 49-148 (160)
32 4ava_A Lysine acetyltransferas 99.5 5.9E-14 2E-18 128.5 13.0 104 10-166 35-140 (333)
33 3ocp_A PRKG1 protein; serine/t 99.5 1.6E-13 5.6E-18 109.8 11.7 93 10-156 45-137 (139)
34 3shr_A CGMP-dependent protein 99.5 1.4E-13 4.7E-18 124.0 11.4 106 10-167 179-288 (299)
35 3pna_A CAMP-dependent protein 99.5 1.8E-13 6E-18 111.8 10.6 94 10-157 60-153 (154)
36 2qcs_B CAMP-dependent protein 99.4 1.6E-12 5.6E-17 116.1 13.0 100 10-163 61-160 (291)
37 1o7f_A CAMP-dependent RAP1 gua 99.4 4.7E-13 1.6E-17 128.0 9.8 90 10-152 64-158 (469)
38 1wgp_A Probable cyclic nucleot 99.4 5.8E-14 2E-18 111.8 2.1 93 10-154 28-133 (137)
39 3of1_A CAMP-dependent protein 99.4 2.9E-12 9.8E-17 111.0 11.5 93 10-155 147-239 (246)
40 3of1_A CAMP-dependent protein 99.4 1.4E-12 4.8E-17 113.0 9.1 98 10-161 29-126 (246)
41 3shr_A CGMP-dependent protein 99.4 4.1E-12 1.4E-16 114.3 12.4 93 10-156 61-153 (299)
42 2qcs_B CAMP-dependent protein 99.4 3.2E-12 1.1E-16 114.2 11.6 101 10-162 179-283 (291)
43 2d93_A RAP guanine nucleotide 99.4 7.3E-13 2.5E-17 105.5 6.4 88 10-151 38-127 (134)
44 3tnp_B CAMP-dependent protein 99.3 6.4E-12 2.2E-16 120.1 12.0 94 10-155 167-262 (416)
45 3tnp_B CAMP-dependent protein 99.3 5.3E-12 1.8E-16 120.7 9.6 106 10-167 289-403 (416)
46 4din_B CAMP-dependent protein 99.3 5.7E-12 2E-16 118.8 9.3 101 10-164 152-252 (381)
47 4din_B CAMP-dependent protein 99.3 5.4E-12 1.9E-16 119.0 7.5 104 10-165 270-377 (381)
48 1o7f_A CAMP-dependent RAP1 gua 99.2 2.5E-11 8.6E-16 115.9 10.5 94 13-159 363-457 (469)
49 3beh_A MLL3241 protein; transm 99.1 6E-12 2E-16 117.3 0.0 102 10-167 250-351 (355)
50 3cf6_E RAP guanine nucleotide 99.1 4.5E-10 1.6E-14 114.3 11.2 91 10-153 54-146 (694)
51 4f7z_A RAP guanine nucleotide 99.0 1.8E-09 6.3E-14 113.1 12.2 93 10-155 64-161 (999)
52 4f7z_A RAP guanine nucleotide 98.9 4.3E-09 1.5E-13 110.4 11.6 88 10-150 359-448 (999)
53 3swy_A Cyclic nucleotide-gated 98.3 1.2E-06 4E-11 58.7 6.1 42 186-227 3-44 (46)
54 3swf_A CGMP-gated cation chann 98.1 5E-06 1.7E-10 60.9 6.1 46 185-230 4-49 (74)
55 3ryp_A Catabolite gene activat 97.8 3.5E-06 1.2E-10 70.9 -0.1 104 65-181 94-207 (210)
56 3d0s_A Transcriptional regulat 97.7 4.6E-06 1.6E-10 71.2 -0.1 111 65-188 103-224 (227)
57 1o5l_A Transcriptional regulat 97.7 3E-06 1E-10 72.2 -1.7 105 65-188 97-211 (213)
58 3dv8_A Transcriptional regulat 97.7 3.2E-06 1.1E-10 71.6 -1.5 106 65-189 102-217 (220)
59 3la7_A Global nitrogen regulat 97.7 3.5E-06 1.2E-10 73.4 -1.5 111 65-188 119-240 (243)
60 3dkw_A DNR protein; CRP-FNR, H 97.6 4.3E-06 1.5E-10 71.1 -1.4 109 65-188 107-225 (227)
61 2gau_A Transcriptional regulat 97.6 4.1E-06 1.4E-10 71.8 -2.2 112 65-189 107-228 (232)
62 2oz6_A Virulence factor regula 97.6 8E-06 2.7E-10 68.5 -0.4 101 65-178 91-201 (207)
63 3kcc_A Catabolite gene activat 97.6 1E-05 3.4E-10 71.4 -0.3 104 65-181 144-257 (260)
64 4ev0_A Transcription regulator 97.6 2.9E-06 1E-10 71.7 -3.6 107 65-190 96-212 (216)
65 2bgc_A PRFA; bacterial infecti 97.5 4.9E-06 1.7E-10 72.1 -3.1 113 65-190 94-219 (238)
66 3e97_A Transcriptional regulat 97.4 5.4E-06 1.8E-10 71.0 -4.4 112 65-189 103-223 (231)
67 3fx3_A Cyclic nucleotide-bindi 97.3 1.7E-05 5.7E-10 68.2 -1.5 107 65-188 108-224 (237)
68 2fmy_A COOA, carbon monoxide o 97.1 0.0041 1.4E-07 52.4 10.9 75 122-205 81-155 (220)
69 3iwz_A CAP-like, catabolite ac 97.1 0.0035 1.2E-07 52.9 10.3 75 121-204 96-175 (230)
70 3e6c_C CPRK, cyclic nucleotide 97.0 0.0035 1.2E-07 54.1 9.8 77 119-205 89-165 (250)
71 1zyb_A Transcription regulator 96.8 0.0033 1.1E-07 53.8 7.8 76 119-203 102-178 (232)
72 1ft9_A Carbon monoxide oxidati 96.5 0.0059 2E-07 51.6 7.4 122 121-255 76-199 (222)
73 3b02_A Transcriptional regulat 95.7 0.0097 3.3E-07 49.3 4.8 80 110-205 49-128 (195)
74 3dn7_A Cyclic nucleotide bindi 95.1 0.0027 9.2E-08 52.4 -0.9 79 65-166 105-193 (194)
75 2zcw_A TTHA1359, transcription 93.5 0.087 3E-06 43.6 5.1 71 119-205 65-135 (202)
76 3fjs_A Uncharacterized protein 80.0 4 0.00014 30.8 6.2 51 10-63 37-87 (114)
77 1dgw_A Canavalin; duplicated s 79.8 2.9 9.8E-05 34.6 5.6 59 4-63 36-96 (178)
78 3lwc_A Uncharacterized protein 79.4 6.1 0.00021 30.4 7.1 48 12-63 43-90 (119)
79 2fqp_A Hypothetical protein BP 78.5 2.3 7.9E-05 31.0 4.2 52 11-63 20-72 (97)
80 3rns_A Cupin 2 conserved barre 77.4 5.5 0.00019 34.0 6.9 51 10-63 38-88 (227)
81 3ci9_A Heat shock factor-bindi 76.5 4.6 0.00016 26.9 4.7 41 188-228 6-46 (48)
82 2vqa_A SLL1358 protein, MNCA; 76.3 3.7 0.00013 37.2 5.8 61 3-63 46-109 (361)
83 2ozj_A Cupin 2, conserved barr 76.1 6.1 0.00021 29.3 6.1 48 13-63 42-89 (114)
84 1yhf_A Hypothetical protein SP 75.8 6.7 0.00023 28.9 6.2 50 11-63 42-91 (115)
85 1j58_A YVRK protein; cupin, de 75.5 4 0.00014 37.5 5.8 55 9-63 79-135 (385)
86 4e2g_A Cupin 2 conserved barre 73.9 7 0.00024 29.4 6.0 50 11-63 43-92 (126)
87 1fxz_A Glycinin G1; proglycini 73.5 7 0.00024 37.7 7.2 62 2-63 329-396 (476)
88 2gu9_A Tetracenomycin polyketi 72.9 8.5 0.00029 27.9 6.1 50 11-63 23-75 (113)
89 3h8u_A Uncharacterized conserv 71.5 8.6 0.00029 28.9 6.0 51 11-63 41-92 (125)
90 1v70_A Probable antibiotics sy 71.3 10 0.00034 26.8 6.1 50 11-63 30-80 (105)
91 2d5f_A Glycinin A3B4 subunit; 71.1 7.8 0.00027 37.6 6.9 62 2-63 358-425 (493)
92 2pfw_A Cupin 2, conserved barr 70.9 8.6 0.00029 28.3 5.8 50 11-63 36-85 (116)
93 3ibm_A Cupin 2, conserved barr 70.5 21 0.00073 28.8 8.5 50 11-63 58-107 (167)
94 1o5u_A Novel thermotoga mariti 70.4 12 0.00041 27.9 6.5 47 13-63 35-81 (101)
95 3bcw_A Uncharacterized protein 68.7 5.9 0.0002 30.9 4.5 47 14-63 54-100 (123)
96 3fz3_A Prunin; TREE NUT allerg 68.6 9.6 0.00033 37.4 6.9 62 2-63 385-452 (531)
97 2vqa_A SLL1358 protein, MNCA; 68.6 8.5 0.00029 34.8 6.3 55 9-63 234-291 (361)
98 3lag_A Uncharacterized protein 66.5 2.1 7.2E-05 31.9 1.4 52 11-62 19-71 (98)
99 2e9q_A 11S globulin subunit be 66.3 11 0.00037 36.2 6.7 62 2-63 313-380 (459)
100 3c3v_A Arachin ARAH3 isoform; 66.2 8.9 0.0003 37.4 6.1 62 2-63 363-430 (510)
101 3rns_A Cupin 2 conserved barre 65.3 12 0.0004 31.8 6.2 51 10-63 154-204 (227)
102 1fi2_A Oxalate oxidase, germin 63.9 19 0.00066 29.9 7.1 61 3-63 64-132 (201)
103 3es4_A Uncharacterized protein 63.4 8.8 0.0003 30.0 4.5 46 15-63 48-93 (116)
104 2bnm_A Epoxidase; oxidoreducta 61.0 9.7 0.00033 31.1 4.7 53 11-63 119-175 (198)
105 2pyt_A Ethanolamine utilizatio 60.3 11 0.00038 29.6 4.7 48 11-63 59-106 (133)
106 3jzv_A Uncharacterized protein 60.1 31 0.0011 28.0 7.6 47 14-63 58-104 (166)
107 1j58_A YVRK protein; cupin, de 59.6 20 0.00069 32.7 7.0 54 10-63 258-314 (385)
108 4fx0_A Probable transcriptiona 59.4 13 0.00044 29.2 5.0 30 144-173 55-84 (148)
109 1lr5_A Auxin binding protein 1 59.1 12 0.00042 29.7 4.8 53 11-63 43-101 (163)
110 2b8m_A Hypothetical protein MJ 57.8 12 0.00041 27.7 4.3 50 12-63 30-79 (117)
111 3es1_A Cupin 2, conserved barr 57.7 11 0.00039 31.2 4.5 51 10-63 80-130 (172)
112 2q30_A Uncharacterized protein 56.8 25 0.00084 25.2 5.9 51 11-63 35-87 (110)
113 3kgz_A Cupin 2 conserved barre 55.7 34 0.0011 27.4 7.0 47 13-62 48-94 (156)
114 4b29_A Dimethylsulfoniopropion 55.2 21 0.0007 31.0 5.8 50 12-63 135-184 (217)
115 1y9q_A Transcriptional regulat 54.9 34 0.0012 27.7 7.0 50 11-63 106-157 (192)
116 2f4p_A Hypothetical protein TM 53.9 27 0.00091 27.4 6.0 51 11-63 50-100 (147)
117 1vj2_A Novel manganese-contain 53.3 16 0.00053 27.7 4.4 49 12-63 51-99 (126)
118 4i4a_A Similar to unknown prot 53.2 21 0.00071 26.7 5.1 50 11-63 36-85 (128)
119 2cav_A Protein (canavalin); vi 52.8 16 0.00054 34.9 5.2 53 10-63 87-141 (445)
120 3s7i_A Allergen ARA H 1, clone 52.4 18 0.00063 34.2 5.5 56 8-63 43-99 (418)
121 1o4t_A Putative oxalate decarb 52.3 29 0.00098 26.6 5.9 48 13-63 61-109 (133)
122 3ksc_A LEGA class, prolegumin; 52.3 24 0.00082 34.3 6.4 62 2-63 349-416 (496)
123 1sfn_A Conserved hypothetical 52.2 27 0.00093 30.0 6.3 51 10-63 166-217 (246)
124 3l2h_A Putative sugar phosphat 51.4 15 0.00051 29.1 4.2 47 11-60 48-96 (162)
125 1x82_A Glucose-6-phosphate iso 51.1 35 0.0012 28.2 6.5 34 30-63 97-132 (190)
126 3i7d_A Sugar phosphate isomera 51.1 16 0.00055 29.4 4.3 51 10-63 44-96 (163)
127 2ea7_A 7S globulin-1; beta bar 50.5 20 0.0007 34.0 5.5 54 10-63 62-116 (434)
128 1uij_A Beta subunit of beta co 50.2 20 0.00068 33.8 5.4 54 10-63 50-104 (416)
129 3cew_A Uncharacterized cupin p 50.1 26 0.00089 26.2 5.2 50 11-63 28-79 (125)
130 2oa2_A BH2720 protein; 1017534 49.5 36 0.0012 26.5 6.1 52 12-63 46-101 (148)
131 2i45_A Hypothetical protein; n 49.3 12 0.00042 27.3 3.1 45 17-63 36-80 (107)
132 3h7j_A Bacilysin biosynthesis 48.9 23 0.00078 30.3 5.2 48 13-63 149-197 (243)
133 1yfu_A 3-hydroxyanthranilate-3 48.9 27 0.00091 29.3 5.3 36 28-63 54-90 (174)
134 3h7j_A Bacilysin biosynthesis 48.8 24 0.00084 30.1 5.4 45 12-59 37-81 (243)
135 3kgl_A Cruciferin; 11S SEED gl 48.4 26 0.00089 33.7 5.9 62 2-63 314-381 (466)
136 2opk_A Hypothetical protein; p 47.6 25 0.00085 26.3 4.7 47 16-63 37-86 (112)
137 1zvf_A 3-hydroxyanthranilate 3 45.9 23 0.00077 29.8 4.4 37 27-63 52-93 (176)
138 1sq4_A GLXB, glyoxylate-induce 45.1 42 0.0014 29.5 6.4 51 10-63 192-243 (278)
139 3bu7_A Gentisate 1,2-dioxygena 43.2 21 0.00072 33.6 4.3 52 10-63 124-175 (394)
140 1uij_A Beta subunit of beta co 42.7 44 0.0015 31.4 6.5 62 2-63 240-320 (416)
141 1sef_A Conserved hypothetical 41.9 48 0.0016 28.8 6.3 50 11-63 184-234 (274)
142 2phl_A Phaseolin; plant SEED s 41.6 33 0.0011 32.2 5.4 49 10-59 53-103 (397)
143 2q1z_B Anti-sigma factor CHRR, 41.4 30 0.001 28.9 4.7 47 10-63 126-172 (195)
144 4axo_A EUTQ, ethanolamine util 41.4 34 0.0012 27.7 4.8 33 28-63 83-115 (151)
145 1sfn_A Conserved hypothetical 40.8 54 0.0019 28.0 6.4 47 12-63 53-99 (246)
146 3myx_A Uncharacterized protein 40.5 34 0.0011 29.9 4.9 33 29-63 186-218 (238)
147 3nw4_A Gentisate 1,2-dioxygena 40.1 36 0.0012 31.7 5.4 52 10-63 104-155 (368)
148 3qac_A 11S globulin SEED stora 39.9 64 0.0022 31.0 7.2 62 2-63 314-381 (465)
149 2d40_A Z3393, putative gentisa 37.4 33 0.0011 31.4 4.6 51 11-63 102-152 (354)
150 2vpv_A Protein MIF2, MIF2P; nu 36.9 38 0.0013 27.9 4.4 48 13-63 92-141 (166)
151 3bu7_A Gentisate 1,2-dioxygena 36.5 42 0.0014 31.5 5.2 51 10-63 295-345 (394)
152 2o8q_A Hypothetical protein; c 36.5 53 0.0018 24.6 5.1 32 30-63 65-96 (134)
153 3ht1_A REMF protein; cupin fol 35.3 23 0.00078 26.9 2.7 48 14-63 44-92 (145)
154 3d82_A Cupin 2, conserved barr 34.8 41 0.0014 23.6 3.9 32 29-63 50-81 (102)
155 1y3t_A Hypothetical protein YX 34.3 64 0.0022 28.3 5.9 50 11-63 48-98 (337)
156 4e2q_A Ureidoglycine aminohydr 34.3 76 0.0026 28.0 6.3 51 10-63 187-238 (266)
157 2ea7_A 7S globulin-1; beta bar 32.8 57 0.002 30.8 5.6 62 2-63 257-336 (434)
158 1rc6_A Hypothetical protein YL 32.7 46 0.0016 28.6 4.6 50 11-63 181-231 (261)
159 1ku9_A Hypothetical protein MJ 32.6 40 0.0014 25.3 3.7 30 144-173 44-73 (152)
160 2qnk_A 3-hydroxyanthranilate 3 31.8 53 0.0018 29.6 4.8 42 21-63 44-86 (286)
161 4e2q_A Ureidoglycine aminohydr 30.6 49 0.0017 29.3 4.4 51 11-63 72-122 (266)
162 2ozi_A Hypothetical protein RP 30.0 17 0.00059 26.9 1.1 53 11-63 19-72 (98)
163 1sq4_A GLXB, glyoxylate-induce 29.2 45 0.0015 29.3 3.9 49 12-63 71-121 (278)
164 1juh_A Quercetin 2,3-dioxygena 28.8 72 0.0025 28.9 5.4 35 29-63 71-107 (350)
165 3d0j_A Uncharacterized protein 28.5 50 0.0017 26.6 3.7 40 24-63 45-89 (140)
166 2o1q_A Putative acetyl/propion 27.8 42 0.0014 26.4 3.1 51 11-63 46-97 (145)
167 2d40_A Z3393, putative gentisa 26.9 69 0.0023 29.2 4.9 50 11-63 270-319 (354)
168 1rc6_A Hypothetical protein YL 26.3 49 0.0017 28.4 3.6 49 12-63 62-112 (261)
169 3neu_A LIN1836 protein; struct 25.3 83 0.0028 23.9 4.4 35 144-178 40-74 (125)
170 2e9q_A 11S globulin subunit be 24.6 78 0.0027 30.2 4.9 61 4-64 56-141 (459)
171 3nw4_A Gentisate 1,2-dioxygena 24.1 2E+02 0.0067 26.6 7.4 51 10-63 280-330 (368)
172 2phl_A Phaseolin; plant SEED s 23.7 1.2E+02 0.004 28.4 5.9 53 11-63 241-303 (397)
173 1xmk_A Double-stranded RNA-spe 23.2 41 0.0014 24.2 2.1 29 144-172 28-57 (79)
174 1juh_A Quercetin 2,3-dioxygena 22.9 89 0.003 28.3 4.8 44 18-63 261-304 (350)
175 3sxy_A Transcriptional regulat 22.6 1.1E+02 0.0037 25.2 4.9 37 144-180 38-74 (218)
176 3ihu_A Transcriptional regulat 22.4 55 0.0019 27.2 3.1 36 144-179 42-77 (222)
177 3myx_A Uncharacterized protein 22.3 93 0.0032 27.0 4.6 42 18-63 55-96 (238)
178 1sef_A Conserved hypothetical 22.2 67 0.0023 27.8 3.7 49 12-63 65-115 (274)
179 2x4h_A Hypothetical protein SS 21.8 1.3E+02 0.0045 22.5 5.0 31 144-174 34-64 (139)
180 2heo_A Z-DNA binding protein 1 21.4 30 0.001 23.6 1.0 30 144-173 28-57 (67)
181 3tqn_A Transcriptional regulat 20.2 42 0.0014 25.2 1.7 34 144-177 36-69 (113)
182 1tbx_A ORF F-93, hypothetical 20.2 43 0.0015 23.9 1.7 28 146-173 31-58 (99)
183 3fx7_A Putative uncharacterize 20.1 2.8E+02 0.0095 20.7 9.7 73 141-227 12-84 (94)
No 1
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.75 E-value=1.8e-17 Score=140.05 Aligned_cols=157 Identities=8% Similarity=0.056 Sum_probs=99.1
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCC-cEEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDE-ETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dG-e~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|+||++|+.+||+++++|+|++|.|+++. +|| +.++.++.|||+||+..
T Consensus 29 ~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~---------------------- 86 (194)
T 3dn7_A 29 FFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYM---------------------- 86 (194)
T ss_dssp TCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHH----------------------
T ss_pred hCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehH----------------------
Confidence 67999999999999999999999999999999994 567 45699999999999873
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
+++. +.++..+++|+++|.++.+++++|.+++.++|.+...++..+..++.
T Consensus 87 -----------------------~~~~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~ 137 (194)
T 3dn7_A 87 -----------------------AFQK------QQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFA 137 (194)
T ss_dssp -----------------------HHHH------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred -----------------------HHhc------CCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 5564 67888999999999999999999999999999999998888887776
Q ss_pred HcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccchhccccccccCC
Q psy15967 167 KDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQRLALLEQGASVNQATSSKRNSQA 243 (280)
Q Consensus 167 ~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~t~~~~~~~~ 243 (280)
.... .+......++.+|++..|..+. .+..+++.-| .+..-|+++++.|..
T Consensus 138 ~~~~---------~~~~l~~~~~~~Rl~~~L~~~~---------------~~~~~~t~~~--iA~~lG~sretlsR~ 188 (194)
T 3dn7_A 138 AAQL---------RSKFQHMYSKEEQYHNFSSRFP---------------EFIQRVPQYL--LASYLGFTPEYLSEI 188 (194)
T ss_dssp HHHH---------HHHHHHHC--------------------------------------------------------
T ss_pred HHHH---------HHHHHhcCCHHHHHHHHHHHCh---------------HHHHHCCHHH--HHHHhCCCHHHHHHH
Confidence 5211 1122233567777777776531 3556677666 667778888888754
No 2
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.74 E-value=1.9e-17 Score=142.77 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=100.5
Q ss_pred cCCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCch
Q psy15967 9 YTALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIP 85 (280)
Q Consensus 9 ~~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~ 85 (280)
..++.+.|++|++|+.+|++++.+|+|++|.|+++. +||+ .++.++.|||+||+.
T Consensus 20 ~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~---------------------- 77 (213)
T 1o5l_A 20 PCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASG---------------------- 77 (213)
T ss_dssp GGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGG----------------------
T ss_pred cccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeH----------------------
Confidence 368999999999999999999999999999999994 5674 569999999999999
Q ss_pred hhhHHhHHHhhccchhhhhhhcchhhhhhcccccCC-cccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHH
Q psy15967 86 NTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGN-RRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQL 164 (280)
Q Consensus 86 ~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~-~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~r 164 (280)
.++. +. ++..+++|+++|.++.|++++|.+++.++|.+...++..+..+
T Consensus 78 ------------------------~~~~------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 127 (213)
T 1o5l_A 78 ------------------------FIFS------SEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH 127 (213)
T ss_dssp ------------------------GTTS------SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ------------------------HHhc------CCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 7764 43 7889999999999999999999999999999999999998888
Q ss_pred HHHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccchhcccccc----c
Q psy15967 165 LRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQRLALLEQGASVNQATSSKR----N 240 (280)
Q Consensus 165 L~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~t~~~~----~ 240 (280)
+..... .+......++.+|++..|..+..+.+ .+..+++.-| .+..-|+++++ -
T Consensus 128 ~~~~~~---------~~~~l~~~~~~~Rl~~~L~~~~~~~g-----------~~~~~~t~~~--lA~~lg~sr~tvsR~l 185 (213)
T 1o5l_A 128 FRVVSE---------KLFFLTTKTLREKLMNFLVRHMNEKR-----------ELTLPVTLEE--LSRLFGCARPALSRVF 185 (213)
T ss_dssp HHHHHH---------HHHHHHCC---------------------------------------------------------
T ss_pred HHHHHH---------HHHHHhhCCHHHHHHHHHHHHhccCC-----------cccCCCCHHH--HHHHhCCCHHHHHHHH
Confidence 875211 12233456888999999988876654 3455555555 44444455554 4
Q ss_pred cCCCCCCCCCCCC
Q psy15967 241 SQAEPTHPEDVRN 253 (280)
Q Consensus 241 ~~~~~~~~~~~~~ 253 (280)
++++..|.-...+
T Consensus 186 ~~L~~~G~I~~~~ 198 (213)
T 1o5l_A 186 QELEREGYIEKHG 198 (213)
T ss_dssp -------------
T ss_pred HHHHHCCeEEEcC
Confidence 5677777765544
No 3
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.74 E-value=2.8e-18 Score=148.27 Aligned_cols=158 Identities=17% Similarity=0.247 Sum_probs=128.7
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchh------------------hhhc
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVR------------------HVLG 68 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~------------------~v~~ 68 (280)
.++.+.|++|++|+.+||+++.+|+|++|.|+++. ++|+ .++.++.|||+||+.. +++.
T Consensus 33 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~ 112 (230)
T 3iwz_A 33 HSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAE 112 (230)
T ss_dssp TSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEE
T ss_pred hCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEE
Confidence 68999999999999999999999999999999994 5674 5699999999999876 7899
Q ss_pred cccccccccccCC-----CCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEcccc
Q psy15967 69 VDLGRITSFCSKG-----YEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYS 133 (280)
Q Consensus 69 i~~~~l~~~~~~~-----~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s 133 (280)
||.+.+..++.++ |.+...+++.+..++. ..+.++|++ .+|.......+.........++
T Consensus 113 i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~---~~L~~l~~~~~~~~~~~~~~~~-- 187 (230)
T 3iwz_A 113 ISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASRLAFLDVTDRIV---RTLHDLSKEPEAMSHPQGTQLR-- 187 (230)
T ss_dssp EEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHTTSTTCEEETTEEEEE--
T ss_pred EeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHhhCCCCCCCceecC--
Confidence 9999999999999 9999888888885544 678899999 8886544333221111112333
Q ss_pred ceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchh
Q psy15967 134 DLFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQ 180 (280)
Q Consensus 134 ~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~ 180 (280)
++ ++.||++.+++++.++|++++|+++|+|......+.+
T Consensus 188 ----lt----~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 226 (230)
T 3iwz_A 188 ----VS----RQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVL 226 (230)
T ss_dssp ----CC----HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred ----CC----HHHHHHHhCCcHHHHHHHHHHHHHCCCEEECCCEEEE
Confidence 44 8999999999999999999999999999876554433
No 4
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.73 E-value=4e-18 Score=147.06 Aligned_cols=166 Identities=17% Similarity=0.122 Sum_probs=135.4
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEE-EcCCc-EEEEEecCCCEecchh----------hhhcccccccccc
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVV-ADDEE-TVLATLSAGSVFGEVR----------HVLGVDLGRITSF 77 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~-~~dGe-~il~~l~~GD~fGe~~----------~v~~i~~~~l~~~ 77 (280)
.++.+.|++|++|+.+||+++.+|+|++|.++++ .++|+ .++.++.|||+||+.. +++.||.+.+..+
T Consensus 26 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~A~~~~~v~~i~~~~~~~l 105 (220)
T 2fmy_A 26 EFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCTHTRAFIQAMEDTTILYTDIRNFQNI 105 (220)
T ss_dssp GSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEESCSSSEEEESSSEEEEEEEHHHHHHH
T ss_pred hhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCCccceEEEEcCcEEEEEEeHHHHHHH
Confidence 6899999999999999999999999999999997 46674 5699999999999854 9999999999999
Q ss_pred ccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccc-eEEEccccceeeechHHHHHH
Q psy15967 78 CSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTA-NVRSLGYSDLFCLAKRDLWET 146 (280)
Q Consensus 78 ~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~-~v~alt~s~l~~l~~~~~~~l 146 (280)
+.++|.+...+++.+..++. ..+.++|++ .+|.......+.+... ..+.++.+ ++.
T Consensus 106 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rl~---~~L~~l~~~~g~~~~~~~~~~~~~t----------~~~ 172 (220)
T 2fmy_A 106 VVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLA---EFLVQAAMDTGLKVPQGIKLELGLN----------TEE 172 (220)
T ss_dssp HHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH---HHHHHHHHHHCEEETTEEEEECSSC----------HHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHhCCCCCCcEEEeccCC----------HHH
Confidence 99999999999998885443 678999999 8876443332322111 12344445 899
Q ss_pred HhhCHHHHHHHHHHHHHHHHHcccchHH-Hhhchhhhhhhhcc
Q psy15967 147 LADYPEARHSLMERGCQLLRKDGLLDEE-AFRNSQVEHEALKD 188 (280)
Q Consensus 147 La~~~~~~r~~lsr~~~rL~~~gli~~~-~~~~~~~~~~~l~~ 188 (280)
||++.+++++.++|++++|+++|+|... ...+.+.|.++|++
T Consensus 173 lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i~d~~~L~~ 215 (220)
T 2fmy_A 173 IALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDLQKLKE 215 (220)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEESCHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEEcCHHHHHH
Confidence 9999999999999999999999999875 65666667666553
No 5
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.73 E-value=5.8e-18 Score=147.86 Aligned_cols=158 Identities=12% Similarity=0.156 Sum_probs=131.9
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCC-cEEEEEecCCCEecchh------------------hhhcc
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDE-ETVLATLSAGSVFGEVR------------------HVLGV 69 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dG-e~il~~l~~GD~fGe~~------------------~v~~i 69 (280)
++.+.|++|++|+.+||+++.+|+|++|.|+++. ++| +.++.++.|||+||+.. +++.|
T Consensus 43 ~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i 122 (232)
T 1zyb_A 43 LHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCI 122 (232)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEE
T ss_pred cEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEEE
Confidence 8999999999999999999999999999999984 456 56799999999999875 89999
Q ss_pred ccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeec
Q psy15967 70 DLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLA 139 (280)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~ 139 (280)
|.+.+..++..+|.+...+++.+..++. ..+.++|++ .+|...+...+ ..+.+..+
T Consensus 123 ~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~---~~L~~l~~~~~-----~~~~~~~t------ 188 (232)
T 1zyb_A 123 SKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKII---RFFLSHCEKPQ-----GEKTFKVK------ 188 (232)
T ss_dssp EHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHH---HHHHTTCSSSS-----SCEEEECC------
T ss_pred EHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH---HHHHHHHhhcC-----CeEEecCC------
Confidence 9999999999999999999998885443 678999999 88864322111 12233344
Q ss_pred hHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhh
Q psy15967 140 KRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEAL 186 (280)
Q Consensus 140 ~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l 186 (280)
++.||++.+++++.++|++++|+++|+|......+.+.|.++|
T Consensus 189 ----~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I~d~~~L 231 (232)
T 1zyb_A 189 ----MDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDAQKL 231 (232)
T ss_dssp ----HHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEESCGGGG
T ss_pred ----HHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEEeChHHc
Confidence 8999999999999999999999999999877666666666554
No 6
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.73 E-value=1.3e-16 Score=137.87 Aligned_cols=135 Identities=22% Similarity=0.397 Sum_probs=116.6
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+||+++.+|+|++|.|+++. ++|+ .++.++.|||+||+.
T Consensus 28 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~----------------------- 84 (227)
T 3d0s_A 28 QLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL----------------------- 84 (227)
T ss_dssp TSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH-----------------------
T ss_pred hCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH-----------------------
Confidence 67899999999999999999999999999999994 4674 569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
+++. +.++.++++|+++|.++.|++++|.+++.++|.+...++..+..++.
T Consensus 85 -----------------------~~~~------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 135 (227)
T 3d0s_A 85 -----------------------SIFD------PGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLR 135 (227)
T ss_dssp -----------------------HHHS------CSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHcC------CCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 8884 67888999999999999999999999999999999999999888887
Q ss_pred HcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHH
Q psy15967 167 KDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFA 205 (280)
Q Consensus 167 ~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~~ 205 (280)
.... ........++..|++..|..+..+++
T Consensus 136 ~~~~---------~~~~l~~~~~~~Rl~~~L~~l~~~~~ 165 (227)
T 3d0s_A 136 RTNN---------NLADLIFTDVPGRVAKQLLQLAQRFG 165 (227)
T ss_dssp HHHH---------HHHHHHHSCHHHHHHHHHHHHHHHHE
T ss_pred HHHH---------HHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 6221 12223346899999999999887765
No 7
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.72 E-value=4.3e-16 Score=133.20 Aligned_cols=131 Identities=24% Similarity=0.422 Sum_probs=112.5
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++++|+|++|.|+++. ++|+ .++.++.|||+||+.
T Consensus 21 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~----------------------- 77 (216)
T 4ev0_A 21 YFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEM----------------------- 77 (216)
T ss_dssp TCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHH-----------------------
T ss_pred hheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeeh-----------------------
Confidence 68999999999999999999999999999999994 5674 569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
+++. +.++..+++|+++|.++.+++++|.+++.++|.+...++..+..++.
T Consensus 78 -----------------------~~~~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~ 128 (216)
T 4ev0_A 78 -----------------------SLLD------EGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLR 128 (216)
T ss_dssp -----------------------HHHH------CCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred -----------------------hhcC------CCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 8885 67888999999999999999999999999999999999999888887
Q ss_pred HcccchHHHhhchhhhhhhhccHHHHHHHHHHHHH
Q psy15967 167 KDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQ 201 (280)
Q Consensus 167 ~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~ 201 (280)
.... ........++..|++..|..+.
T Consensus 129 ~~~~---------~~~~~~~~~~~~Rl~~~L~~~~ 154 (216)
T 4ev0_A 129 EADL---------ELDLLSFEEARNRVAYALLKLL 154 (216)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---------HHHHHhcCCHHHHHHHHHHHHh
Confidence 6221 1122223578888988888775
No 8
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.72 E-value=5.9e-16 Score=132.70 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=115.1
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCE--ecchhhhhccccccccccccCCCCc
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSV--FGEVRHVLGVDLGRITSFCSKGYEI 84 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~--fGe~~~v~~i~~~~l~~~~~~~~~~ 84 (280)
.++.+.|++|++|+.+|++++++|+|++|.|+++. ++|+ .++.++.|||+ ||+.
T Consensus 25 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~--------------------- 83 (220)
T 3dv8_A 25 NLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSAS--------------------- 83 (220)
T ss_dssp TCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGG---------------------
T ss_pred hCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHH---------------------
Confidence 78999999999999999999999999999999994 5674 56999999999 6888
Q ss_pred hhhhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHH
Q psy15967 85 PNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQL 164 (280)
Q Consensus 85 ~~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~r 164 (280)
+++. +.++..+++|+++|.++.+++++|.+++.++|.+...++..+..+
T Consensus 84 -------------------------~~~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 132 (220)
T 3dv8_A 84 -------------------------CIMR------SIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATR 132 (220)
T ss_dssp -------------------------GGCT------TCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -------------------------HHhC------CCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 7774 678889999999999999999999999999999999999888888
Q ss_pred HHHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHH
Q psy15967 165 LRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFA 205 (280)
Q Consensus 165 L~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~~ 205 (280)
+..... ........++..|++..|..+..+.+
T Consensus 133 l~~~~~---------~~~~~~~~~~~~Rl~~~L~~~~~~~~ 164 (220)
T 3dv8_A 133 FSDVMW---------LIEQIMWKSLDKRVASFLLEETSIEG 164 (220)
T ss_dssp HHHHHH---------HHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH---------HHHHHhcCCHHHHHHHHHHHhhhhcC
Confidence 866211 12223356899999999998887653
No 9
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.72 E-value=3.3e-16 Score=135.82 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=114.7
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCC-cEEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDE-ETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dG-e~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++.+|+|++|.|+++. ++| +.++.++.|||+||+.
T Consensus 32 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~----------------------- 88 (232)
T 2gau_A 32 EIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMR----------------------- 88 (232)
T ss_dssp HCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHH-----------------------
T ss_pred hCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeee-----------------------
Confidence 58999999999999999999999999999999993 456 5679999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
+++. +.++..+++|+++|.++.|++++|.+++.++|.+...++..+..++.
T Consensus 89 -----------------------~~~~------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 139 (232)
T 2gau_A 89 -----------------------PYFA------EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELG 139 (232)
T ss_dssp -----------------------HHHH------TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred -----------------------hhhC------CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 8875 66788999999999999999999999999999999999999888887
Q ss_pred HcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHH
Q psy15967 167 KDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFA 205 (280)
Q Consensus 167 ~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~~ 205 (280)
.... ........++..|++..|..+..+++
T Consensus 140 ~~~~---------~~~~l~~~~~~~Rl~~~L~~l~~~~~ 169 (232)
T 2gau_A 140 YAER---------RTVTLTQKHVRGRLAETLLILKENFG 169 (232)
T ss_dssp HHHH---------HHHHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHH---------HHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 6221 11223346889999999988887765
No 10
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.72 E-value=3.5e-17 Score=141.90 Aligned_cols=134 Identities=20% Similarity=0.218 Sum_probs=113.7
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++.+|+|++|.|+++. ++|+ .++.++.|||+||+.
T Consensus 28 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~----------------------- 84 (231)
T 3e97_A 28 VVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET----------------------- 84 (231)
T ss_dssp TEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT-----------------------
T ss_pred hcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH-----------------------
Confidence 68999999999999999999999999999999994 5674 569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
+++. +.++..+++|+++|.++.+++++|.+++.++|.+...++..+..++.
T Consensus 85 -----------------------~~~~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 135 (231)
T 3e97_A 85 -----------------------AVLA------HQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVT 135 (231)
T ss_dssp -----------------------TTTC------CCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHhC------CCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 7874 67888999999999999999999999999999999999999888887
Q ss_pred HcccchHHHhhchhhhhhhhccHH-HHHHHHHHHHHHHHHH
Q psy15967 167 KDGLLDEEAFRNSQVEHEALKDTV-RRLDTTLEHLQTRFAR 206 (280)
Q Consensus 167 ~~gli~~~~~~~~~~~~~~l~~~~-~rl~~~l~~~~~~~~~ 206 (280)
..... +. ...+.. .|++..|..+..+++.
T Consensus 136 ~~~~~---------~~--~~~~~~~~Rl~~~L~~~~~~~~~ 165 (231)
T 3e97_A 136 FLNDE---------LI--AFGQNTEAALTHVFANLYRQRLA 165 (231)
T ss_dssp HHHHH---------HH--HHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---------HH--HhccChHHHHHHHHHHHHHhcCC
Confidence 62111 11 234667 8999999988877763
No 11
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.71 E-value=1.4e-17 Score=144.03 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=132.4
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEE-EcCCc-EEEEEecCCCEecchh----------hhhcccccccccc
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVV-ADDEE-TVLATLSAGSVFGEVR----------HVLGVDLGRITSF 77 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~-~~dGe-~il~~l~~GD~fGe~~----------~v~~i~~~~l~~~ 77 (280)
.++.+.|++|++||.+|++++.+|+|++|.|+++ .++|+ .++.++.||++||... +++.||.+.+..+
T Consensus 22 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG~~~~~~~~A~~~~~v~~i~~~~~~~l 101 (222)
T 1ft9_A 22 GFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHSGCLVEATERTEVRFADIRTFEQK 101 (222)
T ss_dssp TCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESCSSCEEEESSCEEEEEECHHHHHHH
T ss_pred hCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEecCCCCEEEEEccceEEEEEeHHHHHHH
Confidence 6899999999999999999999999999999997 56674 5699999999999433 9999999999999
Q ss_pred ccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccc-eEEEccccceeeechHHHHHH
Q psy15967 78 CSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTA-NVRSLGYSDLFCLAKRDLWET 146 (280)
Q Consensus 78 ~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~-~v~alt~s~l~~l~~~~~~~l 146 (280)
+..+|.+...+++.+..++. ..+..+|++ .+|.......+.+... ..+.+..+ ++.
T Consensus 102 ~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~---~~L~~l~~~~~~~~~~~~~~~~~~t----------~~~ 168 (222)
T 1ft9_A 102 LQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIA---GFFIDHANTTGRQTQGGVIVSVDFT----------VEE 168 (222)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH---HHHHHTCBCCCSCC--CCCCEECCC----------HHH
T ss_pred HHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHhCCCCCCcEEEeccCC----------HHH
Confidence 99999999999998885543 778999999 8886544333322111 11233334 899
Q ss_pred HhhCHHHHHHHHHHHHHHHHHcccchHHHhhc-hhhhhhhhc
Q psy15967 147 LADYPEARHSLMERGCQLLRKDGLLDEEAFRN-SQVEHEALK 187 (280)
Q Consensus 147 La~~~~~~r~~lsr~~~rL~~~gli~~~~~~~-~~~~~~~l~ 187 (280)
||++.+++++.++|++++|+++|+|......+ .+.|..+|+
T Consensus 169 lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~~i~d~~~L~ 210 (222)
T 1ft9_A 169 IANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIPNLVRLK 210 (222)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECSSHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCcEEEcCCceEEEcCHHHHH
Confidence 99999999999999999999999998766552 344555544
No 12
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.71 E-value=3.5e-17 Score=142.39 Aligned_cols=135 Identities=14% Similarity=0.179 Sum_probs=115.2
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++++|+|++|.|+++. ++|+ .++.++.|||+||+.
T Consensus 33 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~----------------------- 89 (237)
T 3fx3_A 33 QAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEA----------------------- 89 (237)
T ss_dssp TCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHH-----------------------
T ss_pred hCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechH-----------------------
Confidence 78999999999999999999999999999999994 5674 569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
+++. +.++..+++|+++|.++.+++++|.+++.++|.+...++..+..++.
T Consensus 90 -----------------------~~~~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 140 (237)
T 3fx3_A 90 -----------------------VALR------NTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLH 140 (237)
T ss_dssp -----------------------HHHH------TCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHhc------CCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 7774 67888999999999999999999999999999999999998888887
Q ss_pred HcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHH
Q psy15967 167 KDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFA 205 (280)
Q Consensus 167 ~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~~ 205 (280)
.... .+......++..|++..|..+..+++
T Consensus 141 ~~~~---------~~~~l~~~~~~~Rl~~~L~~~~~~~~ 170 (237)
T 3fx3_A 141 SLVA---------QLEQLKAQTGAQRVAEFLLELCDCDT 170 (237)
T ss_dssp HHHH---------HHHHCCCCCHHHHHHHHHHHHCCC--
T ss_pred HHHH---------HHHHHhcCCHHHHHHHHHHHHhhhcC
Confidence 6211 12233456899999999998866543
No 13
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.71 E-value=4e-16 Score=132.81 Aligned_cols=134 Identities=18% Similarity=0.307 Sum_probs=114.5
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++++|+|++|.|+++. ++|+ .++.++.|||+||+.
T Consensus 18 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~----------------------- 74 (210)
T 3ryp_A 18 HCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGEL----------------------- 74 (210)
T ss_dssp TSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCT-----------------------
T ss_pred hcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH-----------------------
Confidence 78999999999999999999999999999999994 5674 569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCC-cccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGN-RRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLL 165 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~-~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL 165 (280)
+++. +. ++..+++|+++|.++.+++++|.+++.++|.+...++..+..++
T Consensus 75 -----------------------~~~~------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 125 (210)
T 3ryp_A 75 -----------------------GLFE------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRL 125 (210)
T ss_dssp -----------------------TTTS------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred -----------------------HHhc------CCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 7774 44 78899999999999999999999999999999999999988888
Q ss_pred HHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHH
Q psy15967 166 RKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRF 204 (280)
Q Consensus 166 ~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~ 204 (280)
..... ........++..|++..|..+..++
T Consensus 126 ~~~~~---------~~~~~~~~~~~~Rl~~~L~~l~~~~ 155 (210)
T 3ryp_A 126 QVTSE---------KVGNLAFLDVTGRIAQTLLNLAKQP 155 (210)
T ss_dssp HHHHH---------HHHHHHHSCHHHHHHHHHHHHTTST
T ss_pred HHHHH---------HHHHHhhCCHHHHHHHHHHHHHHhc
Confidence 76221 1122334689999999998887654
No 14
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.71 E-value=4.2e-16 Score=132.44 Aligned_cols=134 Identities=22% Similarity=0.288 Sum_probs=112.7
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|+||++|+.+|++++.+|+|++|.|+++. +||+ .++.++.|||+||+.
T Consensus 12 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~----------------------- 68 (207)
T 2oz6_A 12 HCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGEL----------------------- 68 (207)
T ss_dssp SSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCT-----------------------
T ss_pred hcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccH-----------------------
Confidence 68999999999999999999999999999999994 5574 569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCC----cccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGN----RRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGC 162 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~----~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~ 162 (280)
+++. +. ++..+++|+++|.++.|++++|.+++.++|.+...++..+.
T Consensus 69 -----------------------~~~~------~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 119 (207)
T 2oz6_A 69 -----------------------GLFE------KEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMA 119 (207)
T ss_dssp -----------------------TTCC-----------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -----------------------HHhc------CCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHH
Confidence 7774 44 68899999999999999999999999999999999999888
Q ss_pred HHHHHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHH
Q psy15967 163 QLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRF 204 (280)
Q Consensus 163 ~rL~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~ 204 (280)
.++..... ........++..|++..|..+..++
T Consensus 120 ~~~~~~~~---------~~~~l~~~~~~~Rl~~~L~~l~~~~ 152 (207)
T 2oz6_A 120 DRLRKTTR---------KVGDLAFLDVTGRVARTLLDLCQQP 152 (207)
T ss_dssp HHHHHHHH---------HHHHHHHCCHHHHHHHHHHHHTTST
T ss_pred HHHHHHHH---------HHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 88876211 1223345688899999988776543
No 15
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.70 E-value=2.5e-17 Score=139.94 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=123.0
Q ss_pred EEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCC-cEEEEEecCCCEecchh-----------------hhhcccccc
Q psy15967 14 FVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDE-ETVLATLSAGSVFGEVR-----------------HVLGVDLGR 73 (280)
Q Consensus 14 ~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dG-e~il~~l~~GD~fGe~~-----------------~v~~i~~~~ 73 (280)
+.|++|++|+.+|++++.+|+|++|.|+++. ++| +.++.++.|||+||+ . +++.||.+.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 6899999999999999999999999999994 567 456999999999999 5 888899888
Q ss_pred ccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHH
Q psy15967 74 ITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDL 143 (280)
Q Consensus 74 l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~ 143 (280)
+. |.+...+++.+..++. ..+..+|++ .+|...+...+.......+.++.+
T Consensus 81 ~~------p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~---~~L~~l~~~~~~~~~~~~~~~~~t---------- 141 (195)
T 3b02_A 81 MD------HEALHRVARNLARQMRRVQAYEAHLQTGELRARIA---RYLLFLADTPLSARDRQGIYVTVS---------- 141 (195)
T ss_dssp CC------HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH---HHHHHHTTSTTEEEETTEEEEECC----------
T ss_pred cC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHcCCCCCCCeeeccCC----------
Confidence 87 8888888888874443 788999999 888654332222111111334444
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhcc
Q psy15967 144 WETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKD 188 (280)
Q Consensus 144 ~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~ 188 (280)
++.||++.+++++.++|++++|+++|+|......+.+.|.++|++
T Consensus 142 ~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~ 186 (195)
T 3b02_A 142 HEEIADATASIRESVSKVLADLRREGLIATAYRRVYLLDLAALER 186 (195)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEECCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHH
Confidence 899999999999999999999999999987766666666666554
No 16
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.68 E-value=1.4e-15 Score=135.48 Aligned_cols=134 Identities=17% Similarity=0.286 Sum_probs=114.9
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++.+|+|++|.|+++. ++|+ .++.++.|||+||+.
T Consensus 68 ~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~----------------------- 124 (260)
T 3kcc_A 68 HCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGEL----------------------- 124 (260)
T ss_dssp TSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCT-----------------------
T ss_pred hCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeeh-----------------------
Confidence 78999999999999999999999999999999994 5674 569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCC-cccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGN-RRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLL 165 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~-~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL 165 (280)
+++. +. ++.++++|+++|.++.|++++|.+++.++|.+...++..+..++
T Consensus 125 -----------------------~~~~------~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l 175 (260)
T 3kcc_A 125 -----------------------GLFE------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRL 175 (260)
T ss_dssp -----------------------TTTS------TTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred -----------------------HHhC------CCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 7774 44 78899999999999999999999999999999999999888888
Q ss_pred HHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHH
Q psy15967 166 RKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRF 204 (280)
Q Consensus 166 ~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~ 204 (280)
..... .+......+...|++..|..+..++
T Consensus 176 ~~~~~---------~~~~l~~~~~~~Rla~~Ll~l~~~~ 205 (260)
T 3kcc_A 176 QVTSE---------KVGNLAFLLVTGRIAQTLLNLAKQP 205 (260)
T ss_dssp HHHHH---------HHHHHHHCCHHHHHHHHHHHHHTST
T ss_pred HHHHH---------HHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 76221 1222334689999999998887654
No 17
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.68 E-value=2.5e-15 Score=132.15 Aligned_cols=134 Identities=22% Similarity=0.309 Sum_probs=112.9
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchhh
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNT 87 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~ 87 (280)
++.+.|++|++|+.+|++++.+|+|++|.|+++. ++|+ .++.++.|||+||+.
T Consensus 43 ~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~------------------------ 98 (243)
T 3la7_A 43 PVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVL------------------------ 98 (243)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCH------------------------
T ss_pred heeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcch------------------------
Confidence 3499999999999999999999999999999994 5674 569999999999999
Q ss_pred hHHhHHHhhccchhhhhhhcchhhhhhcccccCCc--ccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15967 88 KWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNR--RTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLL 165 (280)
Q Consensus 88 ~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~--~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL 165 (280)
+++. +.+ +..+++|+++|.++.+++++|.+++.++|.+...++..+..++
T Consensus 99 ----------------------~~~~------~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 150 (243)
T 3la7_A 99 ----------------------SLLT------GNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRI 150 (243)
T ss_dssp ----------------------HHHS------SCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------------HHhC------CCCCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 8874 444 4478999999999999999999999999999999999888888
Q ss_pred HHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHH
Q psy15967 166 RKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFA 205 (280)
Q Consensus 166 ~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~~ 205 (280)
..... ........++.+|++..|..+..+++
T Consensus 151 ~~~~~---------~~~~l~~~~~~~Rla~~L~~l~~~~g 181 (243)
T 3la7_A 151 LQTEM---------MIETLAHRDMGSRLVSFLLILCRDFG 181 (243)
T ss_dssp HHHHH---------HHHHHHCSSHHHHHHHHHHHHHHHHE
T ss_pred HHHHH---------HHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 76211 11223346899999999999988765
No 18
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.68 E-value=6.1e-16 Score=123.39 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=92.9
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCC-cEE---EEEecCCCEecchhhhhccccccccccccCCCC
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDE-ETV---LATLSAGSVFGEVRHVLGVDLGRITSFCSKGYE 83 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dG-e~i---l~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~ 83 (280)
.++.+.|++|++|+++|++++.+|+|++|.++++. ++| +.+ +.++.|||+||+.
T Consensus 28 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~-------------------- 87 (142)
T 3mdp_A 28 ISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVS-------------------- 87 (142)
T ss_dssp TEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGG--------------------
T ss_pred hhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechH--------------------
Confidence 68999999999999999999999999999999993 556 567 8999999999999
Q ss_pred chhhhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHH
Q psy15967 84 IPNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQ 163 (280)
Q Consensus 84 ~~~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~ 163 (280)
+++. +.++..+++|.++|.++.|++++|.+++.++|.+...++..+.+
T Consensus 88 --------------------------~~~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 135 (142)
T 3mdp_A 88 --------------------------SLIK------PYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA 135 (142)
T ss_dssp --------------------------GSST------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --------------------------HHcC------CCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 7774 67888999999999999999999999999999999999888887
Q ss_pred HHHH
Q psy15967 164 LLRK 167 (280)
Q Consensus 164 rL~~ 167 (280)
.+.+
T Consensus 136 ~l~~ 139 (142)
T 3mdp_A 136 AVLA 139 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 19
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.68 E-value=3.1e-17 Score=144.57 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=135.8
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchh--------------hhhccccc
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVR--------------HVLGVDLG 72 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~--------------~v~~i~~~ 72 (280)
.++.+.|++|++|+.+|++++.+|+|++|.|+++. ++|+ .++.++.|||+||+.+ +++.||.+
T Consensus 31 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~l~~~~~~~~~A~~~~~v~~i~~~ 110 (250)
T 3e6c_C 31 MGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPTGNNIYATAMEPTRTCWFSEK 110 (250)
T ss_dssp GSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECCCSCCSCCEEEEESSSEEEEEECHH
T ss_pred hCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEeeecCCCCceEEEEcccEEEEEEcHH
Confidence 68999999999999999999999999999999994 5674 5699999999999711 89999999
Q ss_pred cccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCccc-ceEEEccccceeeechH
Q psy15967 73 RITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRT-ANVRSLGYSDLFCLAKR 141 (280)
Q Consensus 73 ~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~-~~v~alt~s~l~~l~~~ 141 (280)
.+..++.++|.+...+++.+..++. ..+.++|++ .+|.......+.... ...+.++.+
T Consensus 111 ~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~Rl~---~~L~~l~~~~~~~~~~~~~i~~~~t-------- 179 (250)
T 3e6c_C 111 SLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRIL---RLFYELCSSQGKRVGDTYEITMPLS-------- 179 (250)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH---HHHHHHHHHHCEEETTEEEEECCCC--------
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHhCCCCCCCcEecCCCC--------
Confidence 9999999999999999998885544 678999999 887644333232111 123344555
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccH
Q psy15967 142 DLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDT 189 (280)
Q Consensus 142 ~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~ 189 (280)
++.||++.+++++.++|++++|+++|+|......+.++|.++|++.
T Consensus 180 --~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~ 225 (250)
T 3e6c_C 180 --QKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHL 225 (250)
T ss_dssp --HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHHHHHHH
T ss_pred --HHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEecHHHHHHH
Confidence 8999999999999999999999999999877766666666655543
No 20
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.67 E-value=2.1e-16 Score=136.10 Aligned_cols=133 Identities=18% Similarity=0.280 Sum_probs=112.1
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCC-cEEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDE-ETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dG-e~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++++|+|++|.|+++. ++| +.++.++.|||+||+.
T Consensus 31 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~----------------------- 87 (227)
T 3dkw_A 31 SSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA----------------------- 87 (227)
T ss_dssp SCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT-----------------------
T ss_pred hCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH-----------------------
Confidence 78999999999999999999999999999999994 557 4569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCc-ccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNR-RTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLL 165 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~-~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL 165 (280)
+++. +.+ +..+++|+++|.++.+++++|.+++.++|.+...++..+..++
T Consensus 88 -----------------------~~~~------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 138 (227)
T 3dkw_A 88 -----------------------MMFM------DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 138 (227)
T ss_dssp -----------------------TTTT------TCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHH
T ss_pred -----------------------HhcC------CCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 7774 666 8899999999999999999999999999999999999888888
Q ss_pred HHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHH
Q psy15967 166 RKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTR 203 (280)
Q Consensus 166 ~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~ 203 (280)
..... ........++..|++..|.++..+
T Consensus 139 ~~~~~---------~~~~~~~~~~~~Rl~~~L~~~~~~ 167 (227)
T 3dkw_A 139 HQRID---------EIETLSLKNATHRVVRYLLTLAAH 167 (227)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHH---------HHHHHhcCCHHHHHHHHHHHhhhh
Confidence 75211 111222357788888888777654
No 21
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.64 E-value=1.6e-15 Score=121.69 Aligned_cols=106 Identities=28% Similarity=0.452 Sum_probs=96.9
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++.+|+|++|.++++. ++|+ .++.++.+|++||+.
T Consensus 27 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~----------------------- 83 (149)
T 2pqq_A 27 SMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL----------------------- 83 (149)
T ss_dssp HCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG-----------------------
T ss_pred hceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH-----------------------
Confidence 57899999999999999999999999999999994 4574 569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
+++. +.++..+++|+++|.++.|++++|.+++.++|.+...++..+..++.
T Consensus 84 -----------------------~~~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~ 134 (149)
T 2pqq_A 84 -----------------------SLFD------PGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLR 134 (149)
T ss_dssp -----------------------GGTS------CEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred -----------------------HhcC------CCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 8874 56788899999999999999999999999999999999998888887
Q ss_pred H
Q psy15967 167 K 167 (280)
Q Consensus 167 ~ 167 (280)
.
T Consensus 135 ~ 135 (149)
T 2pqq_A 135 K 135 (149)
T ss_dssp H
T ss_pred H
Confidence 6
No 22
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.64 E-value=2.2e-16 Score=134.60 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=120.1
Q ss_pred CCEEEEeCCCCEEEcCCCcC--CeEEEEeeeEEEEEE--cCC-cEEEEEecCCCEecchh----------------hhhc
Q psy15967 10 TALNFVFSPGDYICRKGDVG--KEMYIVKRGKLNVVA--DDE-ETVLATLSAGSVFGEVR----------------HVLG 68 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~--~~iyiIlsG~Vkv~~--~dG-e~il~~l~~GD~fGe~~----------------~v~~ 68 (280)
.++.+.|++|++|+.+|+++ +++|+|++|.|+++. +|| +.++.++.|||+||+.. +++.
T Consensus 4 ~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~l~~~~~~~~~~A~~~~~v~~ 83 (202)
T 2zcw_A 4 VRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQERIYFAEAATDVRLEP 83 (202)
T ss_dssp --CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECTHHHHTCCBCSEEEESSCEEEEE
T ss_pred cceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeeehhcCCCCcceEEEEcccEEEEE
Confidence 45678999999999999999 999999999999994 567 45699999999999932 6666
Q ss_pred cccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccceeee
Q psy15967 69 VDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCL 138 (280)
Q Consensus 69 i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l 138 (280)
| .+.+. |.+...+++.+..++. ..+.++|++ .+|.......+.......+.+..+
T Consensus 84 i-~~~~~------p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~---~~L~~l~~~~~~~~~~~~~~~~~t----- 148 (202)
T 2zcw_A 84 L-PENPD------PELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMA---AALLELSETPLAHEEEGKVVLKAT----- 148 (202)
T ss_dssp C-CSSCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHTTSTTEEEETTEEEEECC-----
T ss_pred E-hHhcC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHhcCCCCCCcEEccCCC-----
Confidence 6 55554 7788888877774443 778999999 888654332221001112333344
Q ss_pred chHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhcc
Q psy15967 139 AKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKD 188 (280)
Q Consensus 139 ~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~ 188 (280)
++.||++.+++++.++|++++|+++|+|......+.+.|.++|.+
T Consensus 149 -----~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~ 193 (202)
T 2zcw_A 149 -----HDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKE 193 (202)
T ss_dssp -----HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred -----HHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHHHHHH
Confidence 899999999999999999999999999987766666667666654
No 23
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.64 E-value=2.4e-15 Score=121.51 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=94.9
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++.+|+|++|.++++. ++|+ .++.++.+||+||+.
T Consensus 34 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~----------------------- 90 (154)
T 2z69_A 34 SSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA----------------------- 90 (154)
T ss_dssp TCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG-----------------------
T ss_pred hCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH-----------------------
Confidence 68999999999999999999999999999999994 4574 459999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCc-ccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNR-RTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLL 165 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~-~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL 165 (280)
+++. +.+ +..+++|+++|.++.|++++|.+++.++|.+...++..+..++
T Consensus 91 -----------------------~~~~------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl 141 (154)
T 2z69_A 91 -----------------------MMFM------DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 141 (154)
T ss_dssp -----------------------GGGS------SCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------hhcc------CCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 7774 566 8899999999999999999999999999999999999999888
Q ss_pred HH
Q psy15967 166 RK 167 (280)
Q Consensus 166 ~~ 167 (280)
+.
T Consensus 142 ~~ 143 (154)
T 2z69_A 142 HQ 143 (154)
T ss_dssp TC
T ss_pred HH
Confidence 76
No 24
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.63 E-value=1.6e-15 Score=129.21 Aligned_cols=104 Identities=30% Similarity=0.592 Sum_probs=95.8
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|+||++|+.+||+++.+|+|.+|.|+++..+|+ ++..+.+||+||+.
T Consensus 93 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~-~~~~l~~G~~fGe~-------------------------- 145 (198)
T 2ptm_A 93 LLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGV-IATSLSDGSYFGEI-------------------------- 145 (198)
T ss_dssp HCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSC-EEEEECTTCEESCH--------------------------
T ss_pred hccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCe-EEEEecCCCEechH--------------------------
Confidence 689999999999999999999999999999999987776 88999999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
+++. +.++.++++|.++|.++.|++++|.+++.++|.+...++..+..+++
T Consensus 146 --------------------~~~~------~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 146 --------------------CLLT------RERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp --------------------HHHH------SSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred --------------------HHcC------CCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 8885 67889999999999999999999999999999999998887776664
No 25
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.62 E-value=8.2e-15 Score=128.22 Aligned_cols=135 Identities=9% Similarity=0.059 Sum_probs=111.1
Q ss_pred cCCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCch
Q psy15967 9 YTALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIP 85 (280)
Q Consensus 9 ~~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~ 85 (280)
..++.+.|++|++|+.+||+++++|+|++|.|+++. ++|+ .++.++ |||+||+.
T Consensus 16 ~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~---------------------- 72 (238)
T 2bgc_A 16 NGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMS---------------------- 72 (238)
T ss_dssp TTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEES----------------------
T ss_pred CCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecch----------------------
Confidence 368899999999999999999999999999999994 5674 568888 99999999
Q ss_pred hhhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcc--cceEEEc-cccceeeechHHHHHHHhhCHHHHHHHHHHHH
Q psy15967 86 NTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRR--TANVRSL-GYSDLFCLAKRDLWETLADYPEARHSLMERGC 162 (280)
Q Consensus 86 ~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~--~~~v~al-t~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~ 162 (280)
+++. +.+. ..++.++ ++|.++.|++++|.+++.++|.+...++..+.
T Consensus 73 ------------------------~~~~------~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 122 (238)
T 2bgc_A 73 ------------------------GFID------TETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQ 122 (238)
T ss_dssp ------------------------BCTT------TCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ------------------------hhhc------CCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 7774 4432 5567777 59999999999999999999999999999988
Q ss_pred HHHHHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHH
Q psy15967 163 QLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFA 205 (280)
Q Consensus 163 ~rL~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~~ 205 (280)
.++..... .+......++..|++..|..+..+++
T Consensus 123 ~~l~~~~~---------~~~~~~~~~~~~Rla~~L~~l~~~~g 156 (238)
T 2bgc_A 123 KQVSYSLA---------KFNDFSINGKLGSICSQLLILTYVYG 156 (238)
T ss_dssp HHHHHHHH---------HHHHHHTTHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHH---------HHHHHHccCHHHHHHHHHHHHHHHhC
Confidence 88876211 12233456889999999999887764
No 26
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.62 E-value=7.6e-15 Score=124.64 Aligned_cols=101 Identities=22% Similarity=0.396 Sum_probs=91.5
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc-EEEEEecCCCEecchhhhhccccccccccccCCCCchh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPN 86 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~ 86 (280)
.++.+.|++|++|+.+|++++.+|+|++|.|+++. ++|+ .++.++.||++||+.
T Consensus 61 ~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~----------------------- 117 (187)
T 3gyd_A 61 YMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEM----------------------- 117 (187)
T ss_dssp TCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHH-----------------------
T ss_pred hcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeH-----------------------
Confidence 78999999999999999999999999999999994 5674 569999999999999
Q ss_pred hhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHH
Q psy15967 87 TKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGC 162 (280)
Q Consensus 87 ~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~ 162 (280)
+++. +.++.++++|+++|.++.|++++|.+++.++|.+...++..+.
T Consensus 118 -----------------------~~l~------~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 164 (187)
T 3gyd_A 118 -----------------------SMID------GMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLL 164 (187)
T ss_dssp -----------------------HHHH------CCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -----------------------HHhC------CCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHH
Confidence 7774 6788899999999999999999999999999999988884433
No 27
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.60 E-value=5.8e-15 Score=126.30 Aligned_cols=105 Identities=36% Similarity=0.634 Sum_probs=96.3
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|+||++|+.+||+++.+|||.+|.|+++..+|+.. .+.+||+||+.
T Consensus 94 ~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~--~l~~G~~fGe~-------------------------- 145 (202)
T 3bpz_A 94 KLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEI-------------------------- 145 (202)
T ss_dssp HCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCE--EEETTCEECHH--------------------------
T ss_pred hCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEE--EEcCCCEeccH--------------------------
Confidence 67899999999999999999999999999999998777543 57999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHc
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRKD 168 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~ 168 (280)
+++. +.++.++++|.++|.++.|++++|.+++.++|.+...+...+..+++..
T Consensus 146 --------------------~~~~------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~~ 198 (202)
T 3bpz_A 146 --------------------CLLT------RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRI 198 (202)
T ss_dssp --------------------HHHH------CSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHHC
T ss_pred --------------------HHhc------CCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence 8885 6788999999999999999999999999999999999999988888763
No 28
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.58 E-value=8.7e-15 Score=116.52 Aligned_cols=102 Identities=24% Similarity=0.408 Sum_probs=92.4
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|++|++|+.+|++++.+|+|++|.++++..+ + .++.|||+||+.
T Consensus 33 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-~---~~~~~G~~~G~~-------------------------- 82 (138)
T 1vp6_A 33 ALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-P---VELGPGAFFGEM-------------------------- 82 (138)
T ss_dssp HCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-C---EEECTTCEECHH--------------------------
T ss_pred hhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-c---ceECCCCEeeeh--------------------------
Confidence 5789999999999999999999999999999999655 2 478999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRK 167 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~ 167 (280)
+++. +.++..+++|+++|.++.|++++|.+++.++|.+...++..+.+|+++
T Consensus 83 --------------------~~~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~ 134 (138)
T 1vp6_A 83 --------------------ALIS------GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 134 (138)
T ss_dssp --------------------HHHH------CCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC-
T ss_pred --------------------Hhcc------CCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhcc
Confidence 8885 667889999999999999999999999999999999999888888754
No 29
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.57 E-value=7.6e-15 Score=120.66 Aligned_cols=97 Identities=15% Similarity=0.377 Sum_probs=87.1
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEE-EcCC-cEEEEEecCCCEecchhhhhccccccccccccCCCCchhh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVV-ADDE-ETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNT 87 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~-~~dG-e~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~ 87 (280)
.++.+.|++|++|+++|++++.+|+|++|.|+++ ..+| +.++.++.+||+||+.
T Consensus 60 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fGe~------------------------ 115 (161)
T 3idb_B 60 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGEL------------------------ 115 (161)
T ss_dssp HCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEECGG------------------------
T ss_pred hcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEechH------------------------
Confidence 6789999999999999999999999999999999 4567 4569999999999999
Q ss_pred hHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHH
Q psy15967 88 KWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLM 158 (280)
Q Consensus 88 ~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~l 158 (280)
+++. +.++.++++|+++|.++.|++++|.+++.++|.+.+.++
T Consensus 116 ----------------------~~~~------~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 158 (161)
T 3idb_B 116 ----------------------ALMY------NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 158 (161)
T ss_dssp ----------------------GGTC------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC-
T ss_pred ----------------------HHHc------CCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 7874 678889999999999999999999999999998766543
No 30
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.57 E-value=1.8e-14 Score=123.98 Aligned_cols=104 Identities=31% Similarity=0.499 Sum_probs=94.7
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|+||++|+.+||+++.+|+|.+|.|+++.. | .++..+.+||+||+.
T Consensus 97 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~-~~~~~l~~G~~fGe~-------------------------- 148 (212)
T 3ukn_A 97 IIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD-N-TVLAILGKGDLIGSD-------------------------- 148 (212)
T ss_dssp HCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS-S-CEEEEECTTCEEECS--------------------------
T ss_pred HhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC-C-eEEEEecCCCCcCcH--------------------------
Confidence 688999999999999999999999999999999973 3 678999999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCC--cccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGN--RRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRK 167 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~--~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~ 167 (280)
+++. +. ++.++++|+++|.++.|++++|.+++.++|.+...++..+..++..
T Consensus 149 --------------------~~~~------~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 149 --------------------SLTK------EQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp --------------------CCSS------SSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred --------------------Hhcc------CCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 7774 55 8899999999999999999999999999999999998888777643
No 31
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.56 E-value=4.5e-14 Score=114.87 Aligned_cols=98 Identities=34% Similarity=0.495 Sum_probs=89.5
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|++|++|+.+|++++.+|+|++|.++++..+ .++.++.+||+||+.
T Consensus 49 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~~~G~~fG~~-------------------------- 100 (160)
T 4f8a_A 49 EFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDD--EVVAILGKGDVFGDV-------------------------- 100 (160)
T ss_dssp TCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETT--EEEEEEETTCEEECC--------------------------
T ss_pred hceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECC--EEEEEecCCCEeCcH--------------------------
Confidence 7899999999999999999999999999999999843 679999999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccC--CcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTG--NRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERG 161 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~--~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~ 161 (280)
+++. + .++.++++|.++|.++.|++++|.+++.++|.+...++..+
T Consensus 101 --------------------~~~~------~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 101 --------------------FWKE------ATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp --------------------TTTC------SSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred --------------------HHhc------CcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7774 4 57889999999999999999999999999999998876554
No 32
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.53 E-value=5.9e-14 Score=128.48 Aligned_cols=104 Identities=18% Similarity=0.312 Sum_probs=97.1
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNT 87 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~ 87 (280)
.++.+.|++|++|+++||+++.+|+|++|.|+++. .+|++++.++.+||+||+.
T Consensus 35 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~------------------------ 90 (333)
T 4ava_A 35 SVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEI------------------------ 90 (333)
T ss_dssp HCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHH------------------------
T ss_pred hCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHH------------------------
Confidence 67899999999999999999999999999999994 4577789999999999999
Q ss_pred hHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 88 KWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 88 ~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
+++. +.++.++++|+++|.++.|++++|.+++ ++|.+...++..+..++.
T Consensus 91 ----------------------~l~~------~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 91 ----------------------ALLR------DSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp ----------------------HHHH------TCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred ----------------------HhcC------CCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 8885 6889999999999999999999999999 999999999999998887
No 33
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.50 E-value=1.6e-13 Score=109.77 Aligned_cols=93 Identities=26% Similarity=0.475 Sum_probs=79.6
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|++|++|+.+|++++.+|+|++|.|+++. +| .++.++.+|++||+.
T Consensus 45 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~g-~~~~~~~~G~~fGe~-------------------------- 96 (139)
T 3ocp_A 45 CMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EG-VKLCTMGPGKVFGEL-------------------------- 96 (139)
T ss_dssp HCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-TT-EEEEEECTTCEESCH--------------------------
T ss_pred hcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-CC-EEEEEeCCCCEeccH--------------------------
Confidence 57899999999999999999999999999999976 44 478999999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHS 156 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~ 156 (280)
+++. +.++.++++|+++|.++.|++++|.+++.++|.+.+.
T Consensus 97 --------------------~~l~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 97 --------------------AILY------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp --------------------HHHH------CCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred --------------------HHHC------CCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 7774 6788899999999999999999999999999988765
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.48 E-value=1.4e-13 Score=123.99 Aligned_cols=106 Identities=24% Similarity=0.392 Sum_probs=97.3
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEc---CC-cEEEEEecCCCEecchhhhhccccccccccccCCCCch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVAD---DE-ETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIP 85 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~---dG-e~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~ 85 (280)
.++.+.|++|++|+.+||+++.+|+|++|.|+++.. +| +.++..+.+||+||+.
T Consensus 179 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~---------------------- 236 (299)
T 3shr_A 179 VLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEK---------------------- 236 (299)
T ss_dssp TCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGG----------------------
T ss_pred hccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChH----------------------
Confidence 679999999999999999999999999999999943 46 4569999999999999
Q ss_pred hhhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15967 86 NTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLL 165 (280)
Q Consensus 86 ~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL 165 (280)
+++. +.++.++++|.++|.++.|++++|.+++.++|.+...++..+..|+
T Consensus 237 ------------------------~ll~------~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~ 286 (299)
T 3shr_A 237 ------------------------ALQG------EDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKA 286 (299)
T ss_dssp ------------------------GGSS------SEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred ------------------------HHhC------CCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhh
Confidence 8874 6788999999999999999999999999999999999999988888
Q ss_pred HH
Q psy15967 166 RK 167 (280)
Q Consensus 166 ~~ 167 (280)
+.
T Consensus 287 ~~ 288 (299)
T 3shr_A 287 KY 288 (299)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 35
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.48 E-value=1.8e-13 Score=111.81 Aligned_cols=94 Identities=19% Similarity=0.461 Sum_probs=83.5
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|++|++|+.+|++++.+|+|++|.|+++. +| .++..+.+||+||+.
T Consensus 60 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~-~~~~~~~~G~~fGe~-------------------------- 111 (154)
T 3pna_A 60 AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN-EWATSVGEGGSFGEL-------------------------- 111 (154)
T ss_dssp HCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-TT-EEEEEECTTCEECCH--------------------------
T ss_pred hceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-CC-EEEEEecCCCEeeeh--------------------------
Confidence 57889999999999999999999999999999998 44 467889999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSL 157 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~ 157 (280)
+++. +.++.++++|+++|.++.|++++|.+++.+++.+.+.+
T Consensus 112 --------------------~~~~------~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 112 --------------------ALIY------GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp --------------------HHHH------CCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred --------------------Hhhc------CCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 8875 67788999999999999999999999999998876643
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.41 E-value=1.6e-12 Score=116.10 Aligned_cols=100 Identities=19% Similarity=0.425 Sum_probs=89.9
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|++|++|+++||+++.+|+|++|.|+++. +| .++..+.+||+||+.
T Consensus 61 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g-~~~~~l~~G~~fGe~-------------------------- 112 (291)
T 2qcs_B 61 AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN-EWATSVGEGGSFGEL-------------------------- 112 (291)
T ss_dssp HCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT-EEEEEECTTCEECGG--------------------------
T ss_pred hccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC-eEEEEcCCCCccchH--------------------------
Confidence 57899999999999999999999999999999998 55 568999999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQ 163 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~ 163 (280)
+++. +.++.++++|.++|.++.|++++|.+++.++|.+.+.++...+.
T Consensus 113 --------------------~l~~------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 113 --------------------ALIY------GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp --------------------GGTC------CCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHhc------CCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8874 67889999999999999999999999999999888776655444
No 37
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.41 E-value=4.7e-13 Score=127.97 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=81.5
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc---EEEEEecCCCEecchhhhhccccccccccccCCCCc
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE---TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEI 84 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe---~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~ 84 (280)
.+..+.|++|++||++||+++.+|+|++|.|+++. .+|+ .++.++.+||+||+.
T Consensus 64 ~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~--------------------- 122 (469)
T 1o7f_A 64 CGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGES--------------------- 122 (469)
T ss_dssp HCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGG---------------------
T ss_pred hceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchh---------------------
Confidence 57889999999999999999999999999999994 4563 679999999999999
Q ss_pred hhhhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHH
Q psy15967 85 PNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPE 152 (280)
Q Consensus 85 ~~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~ 152 (280)
+ +. +.++.++++|.++|.++.|++++|.+++.++|.
T Consensus 123 -------------------------~-l~------~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 123 -------------------------I-LD------NTPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp -------------------------G-GG------TCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred -------------------------h-hC------CCCccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 8 64 678899999999999999999999999887765
No 38
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.39 E-value=5.8e-14 Score=111.75 Aligned_cols=93 Identities=24% Similarity=0.393 Sum_probs=79.5
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEE-EcCCc-EEEE--EecCCCEecchhhhhccccccccccccCCCCch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVV-ADDEE-TVLA--TLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIP 85 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~-~~dGe-~il~--~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~ 85 (280)
.++.+.|++|++|+++||+++.+|+|++|.|+++ .++|+ .++. ++.+||+||+.
T Consensus 28 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~---------------------- 85 (137)
T 1wgp_A 28 RLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE---------------------- 85 (137)
T ss_dssp HCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH----------------------
T ss_pred HheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH----------------------
Confidence 5788999999999999999999999999999977 45564 4455 99999999999
Q ss_pred hhhHHhHHHhhccchhhhhhhcchhh---hhhcccccCC------cccceEEEccccceeeechHHHHHHHhhCHHHH
Q psy15967 86 NTKWLNLIVKAQPMKLRKTVLNKVSV---LEIAGNRTGN------RRTANVRSLGYSDLFCLAKRDLWETLADYPEAR 154 (280)
Q Consensus 86 ~~~~~~l~~k~~~~~~~~rl~~~~~l---L~~~~~~~~~------~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~ 154 (280)
++ +. +. ++.++++|+++|.++.|++++|.+++.++|.+.
T Consensus 86 ------------------------~l~~~~~------~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 86 ------------------------LLTWALD------PKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp ------------------------HHHHHHC------SSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred ------------------------HHHHHhc------cccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhH
Confidence 64 53 33 357899999999999999999999999887654
No 39
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.9e-12 Score=111.01 Aligned_cols=93 Identities=25% Similarity=0.430 Sum_probs=85.1
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.+..+.|++|++|+++|++++.+|+|.+|.++++..+.. ++..+.+||+||+.
T Consensus 147 ~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-~~~~l~~g~~fGe~-------------------------- 199 (246)
T 3of1_A 147 ALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-VINKLKDHDYFGEV-------------------------- 199 (246)
T ss_dssp TCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-EEEEEETTCEECHH--------------------------
T ss_pred hhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-eEEEcCCCCcccHH--------------------------
Confidence 678999999999999999999999999999999976543 78999999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARH 155 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r 155 (280)
+++. +.++.++++|.++|.++.|++++|.+++.++|.+..
T Consensus 200 --------------------~~~~------~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 200 --------------------ALLN------DLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp --------------------HHHH------TCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred --------------------HHhC------CCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 8885 788899999999999999999999999999887653
No 40
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.4e-12 Score=112.96 Aligned_cols=98 Identities=20% Similarity=0.343 Sum_probs=86.5
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|++|++|+++||+++.+|+|++|.++++..+ + .+..+.+||+||+.
T Consensus 29 ~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~-~-~~~~~~~g~~fGe~-------------------------- 80 (246)
T 3of1_A 29 CLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVND-N-KVNSSGPGSSFGEL-------------------------- 80 (246)
T ss_dssp TCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTT-S-CCEEECTTCEECHH--------------------------
T ss_pred hhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECC-E-EEEecCCCCeeehh--------------------------
Confidence 7899999999999999999999999999999999743 2 35889999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERG 161 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~ 161 (280)
+++. +.++.++++|.++|.++.|++++|.+++.++|...+.+....
T Consensus 81 --------------------~l~~------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (246)
T 3of1_A 81 --------------------ALMY------NSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDL 126 (246)
T ss_dssp --------------------HHHH------TCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHH
T ss_pred --------------------HHhc------CCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHH
Confidence 8885 678899999999999999999999999999997766554433
No 41
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.36 E-value=4.1e-12 Score=114.32 Aligned_cols=93 Identities=26% Similarity=0.478 Sum_probs=83.8
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|++|++|+++||+++.+|+|++|.|+++..+ .++..+.+||+||+.
T Consensus 61 ~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g--~~~~~~~~G~~fGe~-------------------------- 112 (299)
T 3shr_A 61 CMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG--VKLCTMGPGKVFGEL-------------------------- 112 (299)
T ss_dssp HCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT--EEEEEECTTCEESCS--------------------------
T ss_pred hcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC--EEEEEeCCCCeeeHh--------------------------
Confidence 5788999999999999999999999999999997644 578999999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHS 156 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~ 156 (280)
+++. +.++.++++|.++|.++.|++++|++++.+++...+.
T Consensus 113 --------------------~ll~------~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~ 153 (299)
T 3shr_A 113 --------------------AILY------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 153 (299)
T ss_dssp --------------------GGGT------TTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHhc------CCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHH
Confidence 8874 7788999999999999999999999999988865543
No 42
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.36 E-value=3.2e-12 Score=114.17 Aligned_cols=101 Identities=20% Similarity=0.318 Sum_probs=89.3
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCC-c-EEEEEecCCCEecchhhhhccccccccccccCCCCch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDE-E-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIP 85 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dG-e-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~ 85 (280)
.++.+.|++|++|+++|++++.+|+|++|.|+++. .+| + .++..+.+||+||+.
T Consensus 179 ~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~---------------------- 236 (291)
T 2qcs_B 179 ALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI---------------------- 236 (291)
T ss_dssp HCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSG----------------------
T ss_pred hcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHH----------------------
Confidence 57899999999999999999999999999999994 334 4 569999999999999
Q ss_pred hhhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHH
Q psy15967 86 NTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGC 162 (280)
Q Consensus 86 ~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~ 162 (280)
+++. +.++.++++|.++|.++.|++++|.+++.++|.+....+....
T Consensus 237 ------------------------~ll~------~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 237 ------------------------ALLM------NRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp ------------------------GGTC------CCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred ------------------------HHcC------CCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 8884 6788999999999999999999999999999988776665543
No 43
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.36 E-value=7.3e-13 Score=105.49 Aligned_cols=88 Identities=20% Similarity=0.386 Sum_probs=78.6
Q ss_pred CCEEEEeC-CCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhh
Q psy15967 10 TALNFVFS-PGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTK 88 (280)
Q Consensus 10 ~~~~~~f~-kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~ 88 (280)
.++.+.|+ +|++|+++|++++.+|+|++|.|+++..+|+. ..+.+||+||+.
T Consensus 38 ~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~--~~l~~G~~fG~~------------------------- 90 (134)
T 2d93_A 38 VMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKV--ENLFMGNSFGIT------------------------- 90 (134)
T ss_dssp TEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCE--EEECTTCEESCC-------------------------
T ss_pred hheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcE--EEecCCCccChh-------------------------
Confidence 67899999 99999999999999999999999999877865 668999999999
Q ss_pred HHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceE-EEccccceeeechHHHHHHHhhCH
Q psy15967 89 WLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANV-RSLGYSDLFCLAKRDLWETLADYP 151 (280)
Q Consensus 89 ~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v-~alt~s~l~~l~~~~~~~lLa~~~ 151 (280)
+++. +.++..++ +|+++|.++.|++++|.+++.+++
T Consensus 91 ---------------------~~~~------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 91 ---------------------PTLD------KQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---------------------SSSC------CEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---------------------HhcC------CCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 7774 56677788 999999999999999999887764
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.33 E-value=6.4e-12 Score=120.10 Aligned_cols=94 Identities=15% Similarity=0.374 Sum_probs=85.4
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE-cCC-cEEEEEecCCCEecchhhhhccccccccccccCCCCchhh
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA-DDE-ETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNT 87 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~-~dG-e~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~ 87 (280)
.+..+.|++|++|+++||.++.+|+|++|.|+++. .+| +.++.++.+|++||+.
T Consensus 167 ~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~------------------------ 222 (416)
T 3tnp_B 167 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGEL------------------------ 222 (416)
T ss_dssp HCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEECGG------------------------
T ss_pred hcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeH------------------------
Confidence 58899999999999999999999999999999994 567 5569999999999999
Q ss_pred hHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHH
Q psy15967 88 KWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARH 155 (280)
Q Consensus 88 ~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r 155 (280)
+++. +.++.++++|.++|.++.|++.+|++++.+++...+
T Consensus 223 ----------------------all~------~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 223 ----------------------ALMY------NTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp ----------------------GGTS------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred ----------------------HHhc------CCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 8884 788999999999999999999999999998887654
No 45
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.30 E-value=5.3e-12 Score=120.67 Aligned_cols=106 Identities=18% Similarity=0.307 Sum_probs=85.9
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cC------C-cEEEEEecCCCEecchhhhhccccccccccccC
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DD------E-ETVLATLSAGSVFGEVRHVLGVDLGRITSFCSK 80 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~d------G-e~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~ 80 (280)
.+..+.|++|++|+.+|++++.+|+|.+|.|+++. .+ | +.++..+.+|++||+.
T Consensus 289 ~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~----------------- 351 (416)
T 3tnp_B 289 VIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGEL----------------- 351 (416)
T ss_dssp HCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGG-----------------
T ss_pred hceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHH-----------------
Confidence 57899999999999999999999999999999993 32 5 4569999999999999
Q ss_pred CCCchhhhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHH
Q psy15967 81 GYEIPNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMER 160 (280)
Q Consensus 81 ~~~~~~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr 160 (280)
+++. +.++.++++|+++|.++.|++++|.+++..+|.+....+..
T Consensus 352 -----------------------------all~------~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~ 396 (416)
T 3tnp_B 352 -----------------------------ALVT------NKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIAT 396 (416)
T ss_dssp -----------------------------GGTC------CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC---
T ss_pred -----------------------------HHhC------CCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHH
Confidence 8884 77899999999999999999999999999999988877777
Q ss_pred HHHHHHH
Q psy15967 161 GCQLLRK 167 (280)
Q Consensus 161 ~~~rL~~ 167 (280)
+.++|..
T Consensus 397 ~~~~L~~ 403 (416)
T 3tnp_B 397 YEEQLVA 403 (416)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 6666654
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.29 E-value=5.7e-12 Score=118.81 Aligned_cols=101 Identities=19% Similarity=0.385 Sum_probs=89.9
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|++|++|+++||+++.+|+|++|.|+++. +| ..+..+.+|++||+.
T Consensus 152 ~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-~~-~~v~~l~~G~~fGe~-------------------------- 203 (381)
T 4din_B 152 AMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-NG-EWVTNISEGGSFGEL-------------------------- 203 (381)
T ss_dssp HCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-TT-EEEEEEESSCCBCGG--------------------------
T ss_pred hceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-CC-eEeeeCCCCCEEEch--------------------------
Confidence 58899999999999999999999999999999997 33 467889999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQL 164 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~r 164 (280)
+++. +.++.++++|.++|.++.|++++|++++.+++...+.+....+.+
T Consensus 204 --------------------all~------~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~ 252 (381)
T 4din_B 204 --------------------ALIY------GTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 252 (381)
T ss_dssp --------------------GGTS------CCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHhc------CCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhh
Confidence 8874 788899999999999999999999999999998888766554444
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.26 E-value=5.4e-12 Score=118.97 Aligned_cols=104 Identities=22% Similarity=0.350 Sum_probs=90.7
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEc--CC-c-EEEEEecCCCEecchhhhhccccccccccccCCCCch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVAD--DE-E-TVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIP 85 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~--dG-e-~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~ 85 (280)
.+..+.|++|++|+++|++++.+|+|.+|.|+++.. +| + ..+..+.+||+||+.
T Consensus 270 ~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~---------------------- 327 (381)
T 4din_B 270 ALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEI---------------------- 327 (381)
T ss_dssp TCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTT----------------------
T ss_pred hhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechH----------------------
Confidence 567789999999999999999999999999999943 34 3 359999999999999
Q ss_pred hhhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15967 86 NTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLL 165 (280)
Q Consensus 86 ~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL 165 (280)
+++. +.++.++++|.++|.++.|++++|.+++..+|.+.+..+......+
T Consensus 328 ------------------------all~------~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 328 ------------------------ALLL------NRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp ------------------------GGGS------CCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred ------------------------HHhC------CCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 8884 7789999999999999999999999999999988777665554443
No 48
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.24 E-value=2.5e-11 Score=115.95 Aligned_cols=94 Identities=24% Similarity=0.380 Sum_probs=80.8
Q ss_pred EEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhHHhH
Q psy15967 13 NFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKWLNL 92 (280)
Q Consensus 13 ~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~~~l 92 (280)
.+.|++|++|+++||+++.+|+|++|.|+++..+ +.++.++.+||+||+.
T Consensus 363 ~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~-~~~~~~l~~G~~fGe~----------------------------- 412 (469)
T 1o7f_A 363 ESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG-KGVVCTLHEGDDFGKL----------------------------- 412 (469)
T ss_dssp EEECSTTCEEECTTSCCCEEEEEEESEEEEEETT-TEEEEEEETTCEECGG-----------------------------
T ss_pred eeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcC-CeeEEEecCCCEEEEe-----------------------------
Confidence 4589999999999999999999999999999743 3589999999999999
Q ss_pred HHhhccchhhhhhhcchhhhhhcccccCCcccceEEEcc-ccceeeechHHHHHHHhhCHHHHHHHHH
Q psy15967 93 IVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLG-YSDLFCLAKRDLWETLADYPEARHSLME 159 (280)
Q Consensus 93 ~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt-~s~l~~l~~~~~~~lLa~~~~~~r~~ls 159 (280)
+++. +.++.++++|++ +|.++.|++++|.+++.++|.+...+..
T Consensus 413 -----------------~ll~------~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 413 -----------------ALVN------DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp -----------------GGTC------CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred -----------------hhhc------CCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 8884 778999999998 6999999999999999999998876543
No 49
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.12 E-value=6e-12 Score=117.25 Aligned_cols=102 Identities=24% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhhH
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTKW 89 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~~ 89 (280)
.++.+.|+|||+|+++||+++.+|+|.+|.++++..+ ...+.+||+||+.
T Consensus 250 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~----~~~l~~G~~fGe~-------------------------- 299 (355)
T 3beh_A 250 ALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEM-------------------------- 299 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC----eeEECCCCEEeeh--------------------------
Confidence 5688899999999999999999999999999999655 2579999999999
Q ss_pred HhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy15967 90 LNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRK 167 (280)
Q Consensus 90 ~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~ 167 (280)
+++. +.++.++++|.++|+++.+++++|.++++++|.+...+.+.+.+|+++
T Consensus 300 --------------------~~l~------~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~ 351 (355)
T 3beh_A 300 --------------------ALIS------GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 351 (355)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred --------------------HHhC------CCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Confidence 8884 677889999999999999999999999999999999998888888765
No 50
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.07 E-value=4.5e-10 Score=114.25 Aligned_cols=91 Identities=23% Similarity=0.385 Sum_probs=82.5
Q ss_pred CCE-EEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhh
Q psy15967 10 TAL-NFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTK 88 (280)
Q Consensus 10 ~~~-~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~ 88 (280)
.+. .+.|++|++||++||+++.+|+|++|.|+++..+ +.++.++.+||+||+.
T Consensus 54 ~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g-~~il~~l~~Gd~fGe~------------------------- 107 (694)
T 3cf6_E 54 VLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG-KGVVCTLHEGDDFGKL------------------------- 107 (694)
T ss_dssp TCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT-TEEEEEEETTCEECHH-------------------------
T ss_pred hcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC-CEEEEEeCCCCEeehH-------------------------
Confidence 455 6899999999999999999999999999999764 4689999999999999
Q ss_pred HHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEcc-ccceeeechHHHHHHHhhCHHH
Q psy15967 89 WLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLG-YSDLFCLAKRDLWETLADYPEA 153 (280)
Q Consensus 89 ~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt-~s~l~~l~~~~~~~lLa~~~~~ 153 (280)
+++. +.++.++++|++ +|.++.|++++|.+++.++|.+
T Consensus 108 ---------------------al~~------~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 108 ---------------------ALVN------DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp ---------------------HHHH------TCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred ---------------------HHhC------CCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 7874 678899999999 5999999999999999998877
No 51
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.99 E-value=1.8e-09 Score=113.14 Aligned_cols=93 Identities=24% Similarity=0.371 Sum_probs=81.9
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEc--C--C-cEEEEEecCCCEecchhhhhccccccccccccCCCCc
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVAD--D--E-ETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEI 84 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~--d--G-e~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~ 84 (280)
.+....|++|++||++||+++.+|+|++|.|.|+.. + + +.++..+.+|+.||+.
T Consensus 64 ~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGEa--------------------- 122 (999)
T 4f7z_A 64 CGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGES--------------------- 122 (999)
T ss_dssp HCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECGG---------------------
T ss_pred heEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhhh---------------------
Confidence 789999999999999999999999999999999932 2 2 5679999999999996
Q ss_pred hhhhHHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHH
Q psy15967 85 PNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARH 155 (280)
Q Consensus 85 ~~~~~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r 155 (280)
.+. +.++.++++|.++|.++.+++.+|+.++.+++....
T Consensus 123 -------------------------ll~-------n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 123 -------------------------ILD-------NTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp -------------------------GGG-------TCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred -------------------------hcc-------CCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 333 578999999999999999999999999998886544
No 52
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.91 E-value=4.3e-09 Score=110.39 Aligned_cols=88 Identities=24% Similarity=0.353 Sum_probs=76.0
Q ss_pred CCEE-EEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecchhhhhccccccccccccCCCCchhhh
Q psy15967 10 TALN-FVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRITSFCSKGYEIPNTK 88 (280)
Q Consensus 10 ~~~~-~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~~~v~~i~~~~l~~~~~~~~~~~~~~ 88 (280)
.+.. ..+++|++|+++||.++.+|||++|.|+|+.. ++..+..+++||+||+.
T Consensus 359 ~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~-~~~~v~~L~~Gd~FGEl------------------------- 412 (999)
T 4f7z_A 359 VLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY-GKGVVCTLHEGDDFGKL------------------------- 412 (999)
T ss_dssp TCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEET-TTEEEEEEETTCEECGG-------------------------
T ss_pred hhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEc-CCcceEEecCCCcccch-------------------------
Confidence 3443 45688999999999999999999999999963 33467889999999999
Q ss_pred HHhHHHhhccchhhhhhhcchhhhhhcccccCCcccceEEEccc-cceeeechHHHHHHHhhC
Q psy15967 89 WLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGY-SDLFCLAKRDLWETLADY 150 (280)
Q Consensus 89 ~~~l~~k~~~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~-s~l~~l~~~~~~~lLa~~ 150 (280)
+++. +.++.++++|.++ |.+++|+++||.+++.+.
T Consensus 413 ---------------------ALL~------~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 413 ---------------------ALVN------DAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp ---------------------GGTC------SCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred ---------------------hhcc------CCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 8884 8999999999885 999999999999998763
No 53
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=98.32 E-value=1.2e-06 Score=58.72 Aligned_cols=42 Identities=57% Similarity=0.832 Sum_probs=39.9
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy15967 186 LKDTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQRLALLEQ 227 (280)
Q Consensus 186 l~~~~~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 227 (280)
+++...+|..+|+.|++||+++++||.+.+.+++||++.+|.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999999999999995
No 54
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=98.11 E-value=5e-06 Score=60.90 Aligned_cols=46 Identities=46% Similarity=0.692 Sum_probs=42.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q psy15967 185 ALKDTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQRLALLEQGAS 230 (280)
Q Consensus 185 ~l~~~~~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 230 (280)
.+++...+|..+|+.|++||+|++++|.+.|.+++|||+.+|....
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678889999999999999999999999999999999999996543
No 55
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=97.76 E-value=3.5e-06 Score=70.89 Aligned_cols=104 Identities=7% Similarity=0.055 Sum_probs=78.9
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .+|...+...+.........++
T Consensus 94 ~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~---~~L~~l~~~~~~~~~~~~~~~~--- 167 (210)
T 3ryp_A 94 EVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIA---QTLLNLAKQPDAMTHPDGMQIK--- 167 (210)
T ss_dssp EEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH---HHHHHHTTSTTCEEETTEEEEE---
T ss_pred EEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH---HHHHHHHHhcCcCCCCCceEec---
Confidence 789999999999999999999999988885544 678899999 8876543322211111112233
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhh
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQV 181 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~ 181 (280)
++ ++.+|++.+++++.++|++++|+++|+|......+.+.
T Consensus 168 ---~t----~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 207 (210)
T 3ryp_A 168 ---IT----RQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVY 207 (210)
T ss_dssp ---CC----HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred ---cC----HHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCCEEEEE
Confidence 44 89999999999999999999999999998765544443
No 56
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=97.71 E-value=4.6e-06 Score=71.25 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=85.0
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCccc-ceEEEcccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRT-ANVRSLGYS 133 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~-~~v~alt~s 133 (280)
+++.||.+.+..++..+|.+...+++.+..++. ..+.++|++ .+|.......+.+.. ...+.++.+
T Consensus 103 ~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~---~~L~~l~~~~~~~~~~~~~i~~~~t 179 (227)
T 3d0s_A 103 RAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVA---KQLLQLAQRFGTQEGGALRVTHDLT 179 (227)
T ss_dssp EEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHHHEEEETTEEEEECCCC
T ss_pred EEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHhCCcCCCceEEcCCCC
Confidence 889999999999999999999999998885444 678999999 887643322221111 112334444
Q ss_pred ceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhcc
Q psy15967 134 DLFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKD 188 (280)
Q Consensus 134 ~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~ 188 (280)
++.||++.+++++.++|++++|+++|+|......+.+.|.++|+.
T Consensus 180 ----------~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~ 224 (227)
T 3d0s_A 180 ----------QEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLAR 224 (227)
T ss_dssp ----------HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred ----------HHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEcCHHHHHH
Confidence 899999999999999999999999999987776666777666553
No 57
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=97.69 E-value=3e-06 Score=72.22 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=30.8
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++..+|.+...+++.+..++. ..+.++|++ .+|....... ....+..+
T Consensus 97 ~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rl~---~~L~~~~~~~------g~~~~~~t- 166 (213)
T 1o5l_A 97 KILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTKTLREKLM---NFLVRHMNEK------RELTLPVT- 166 (213)
T ss_dssp EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------------------
T ss_pred EEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH---HHHHHHhccC------CcccCCCC-
Confidence 889999999999999999999999998885544 678889999 8875322111 11223333
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhcc
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKD 188 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~ 188 (280)
++.||++.+++++.++|++++|+++|+|......+.+.|.+.|++
T Consensus 167 ---------~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~I~d~~~L~~ 211 (213)
T 1o5l_A 167 ---------LEELSRLFGCARPALSRVFQELEREGYIEKHGRRIKVLKNPFEHD 211 (213)
T ss_dssp ------------------------------------------------------
T ss_pred ---------HHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEEEechHHhhh
Confidence 889999999999999999999999999988777666777666653
No 58
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=97.68 E-value=3.2e-06 Score=71.61 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=84.4
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .++.......+. ..++
T Consensus 102 ~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~---~~L~~~~~~~~~------~~~~--- 169 (220)
T 3dv8_A 102 DLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVA---SFLLEETSIEGT------NELK--- 169 (220)
T ss_dssp EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHHHTS------SEEC---
T ss_pred EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHhhhhcCC------ceec---
Confidence 788999999999999999999999988885443 678899999 888643332221 1223
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccH
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDT 189 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~ 189 (280)
++ ++.+|++.+++++.++|++++|+++|+|......+.+.|.++|++.
T Consensus 170 ---~t----~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~ 217 (220)
T 3dv8_A 170 ---IT----HETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILDSKRLETL 217 (220)
T ss_dssp ---CC----HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHH
T ss_pred ---CC----HHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHHHHHHH
Confidence 33 8999999999999999999999999999887777777777766544
No 59
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=97.67 E-value=3.5e-06 Score=73.37 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=82.3
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCccc-ceEEEcccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRT-ANVRSLGYS 133 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~-~~v~alt~s 133 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .+|...+...+.+.. ...+.+..+
T Consensus 119 ~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla---~~L~~l~~~~g~~~~~~~~i~~~lt 195 (243)
T 3la7_A 119 ELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLV---SFLLILCRDFGVPCADGITIDLKLS 195 (243)
T ss_dssp EEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHH---HHHHHHHHHHEEECSSSEEECSCCC
T ss_pred EEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHhCCCCCCCeEEeccCC
Confidence 788999999999999999999999988885443 678899999 887644332221111 122334444
Q ss_pred ceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhcc
Q psy15967 134 DLFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKD 188 (280)
Q Consensus 134 ~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~ 188 (280)
++.||++.+++++.++|++++|+++|+|......+.+.|.++|++
T Consensus 196 ----------~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~~~L~~ 240 (243)
T 3la7_A 196 ----------HQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVTLSR 240 (243)
T ss_dssp ----------HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC------
T ss_pred ----------HHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECCHHHHHh
Confidence 899999999999999999999999999988777777777776654
No 60
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=97.63 E-value=4.3e-06 Score=71.15 Aligned_cols=109 Identities=9% Similarity=0.026 Sum_probs=84.5
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .+|........ .....+.++.+
T Consensus 107 ~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~---~~L~~~~~~~~--~~~~~~~~~~t- 180 (227)
T 3dkw_A 107 QLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVV---RYLLTLAAHAP--GENCRVEIPVA- 180 (227)
T ss_dssp EEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCSSS--SSCCCCCCCSC-
T ss_pred EEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHhhhhcC--CCCeEEEecCC-
Confidence 789999999999999999999999998885554 568889999 88754332210 01111233334
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhcc
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKD 188 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~ 188 (280)
++.+|++.+++++.++|++++|+++|+|......+.+.|.++|++
T Consensus 181 ---------~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~ 225 (227)
T 3dkw_A 181 ---------KQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDRERLEC 225 (227)
T ss_dssp ---------THHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEESCSTTTSS
T ss_pred ---------HHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEEeCHHHHhh
Confidence 899999999999999999999999999988777777777777754
No 61
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=97.59 E-value=4.1e-06 Score=71.81 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=84.3
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .+|.......+.......+.+.
T Consensus 107 ~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~---~~L~~l~~~~~~~~~~~~~~~~--- 180 (232)
T 2gau_A 107 KVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLA---ETLLILKENFGFENDGATLSIY--- 180 (232)
T ss_dssp EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHHHCBCTTSSBBSCC---
T ss_pred EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHcCCCCCCcEEEcc---
Confidence 789999999999999999999999999885444 778999999 8885322221210000112233
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccH
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDT 189 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~ 189 (280)
++ ++.||++.+++++.++|++++|+++|+|......+.+.|.++|++.
T Consensus 181 ---~t----~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~ 228 (232)
T 2gau_A 181 ---LS----REELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKT 228 (232)
T ss_dssp ---CC----HHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHH
T ss_pred ---cC----HHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEeCHHHHHHH
Confidence 33 8999999999999999999999999999877776667776666543
No 62
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=97.59 E-value=8e-06 Score=68.50 Aligned_cols=101 Identities=10% Similarity=0.090 Sum_probs=76.4
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+..+|++ .+|.......+.........+
T Consensus 91 ~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~Rl~---~~L~~l~~~~~~~~~~~~~~~---- 163 (207)
T 2oz6_A 91 EVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVA---RTLLDLCQQPDAMTHPDGMQI---- 163 (207)
T ss_dssp EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHTTSTTCEEETTEEEE----
T ss_pred EEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHhcCCCCCCCceec----
Confidence 889999999999999999999999998885543 678899999 887543322221101111223
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhc
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRN 178 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~ 178 (280)
.++ ++.||++.+++++.++|++++|+++|+|......+
T Consensus 164 --~~t----~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i 201 (207)
T 2oz6_A 164 --KIT----RQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTM 201 (207)
T ss_dssp --ECC----HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred --ccC----HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEE
Confidence 344 89999999999999999999999999997655443
No 63
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=97.55 E-value=1e-05 Score=71.36 Aligned_cols=104 Identities=7% Similarity=0.047 Sum_probs=78.7
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .+|.......+.......+.+.
T Consensus 144 ~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla---~~Ll~l~~~~~~~~~~~~~~l~--- 217 (260)
T 3kcc_A 144 EVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLLVTGRIA---QTLLNLAKQPDAMTHPDGMQIK--- 217 (260)
T ss_dssp EEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHTSTTCEEETTEEEEE---
T ss_pred EEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHhcCCCCCCCceeec---
Confidence 889999999999999999999999988885544 678899999 8876443322221111122333
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhh
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQV 181 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~ 181 (280)
++ ++.||++.+++++.++|++++|+++|+|......+.++
T Consensus 218 ---lt----~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~ 257 (260)
T 3kcc_A 218 ---IT----RQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVY 257 (260)
T ss_dssp ---CC----HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEEC
T ss_pred ---CC----HHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 44 89999999999999999999999999998765544333
No 64
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=97.55 E-value=2.9e-06 Score=71.67 Aligned_cols=107 Identities=11% Similarity=-0.008 Sum_probs=84.1
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .++..... .. ....+
T Consensus 96 ~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~---~~L~~~~~--~~----~~~~~---- 162 (216)
T 4ev0_A 96 ELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVA---YALLKLLR--QG----LGPLF---- 162 (216)
T ss_dssp EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--TT----CCSEE----
T ss_pred EEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHhh--cC----CccCC----
Confidence 789999999999999999999999988885544 678899999 88853321 11 11122
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccHH
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTV 190 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~~ 190 (280)
.++ ++.+|++.+++++.++|++++|+++|+|......+.+.|.++|++..
T Consensus 163 --~~t----~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a 212 (216)
T 4ev0_A 163 --QIR----HHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEEIA 212 (216)
T ss_dssp --ECC----HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred --CCC----HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHh
Confidence 334 89999999999999999999999999998777776677777665443
No 65
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=97.49 E-value=4.9e-06 Score=72.08 Aligned_cols=113 Identities=13% Similarity=0.029 Sum_probs=85.3
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccc-eEEEc-cc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTA-NVRSL-GY 132 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~-~v~al-t~ 132 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .+|.......+..... ..+.+ +.
T Consensus 94 ~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rla---~~L~~l~~~~g~~~~~~~~i~~~~~ 170 (238)
T 2bgc_A 94 TAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSIC---SQLLILTYVYGKETPDGIKITLDNL 170 (238)
T ss_dssp EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH---HHHHHHHHHHEEEETTEEEECCSCC
T ss_pred EEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH---HHHHHHHHHhCCCCCCceEEEeccC
Confidence 678999999999999999999999998885544 678899999 8875433222211111 12233 34
Q ss_pred cceeeechHHHHHHHhhCHHHHH-HHHHHHHHHHHHcccchHHHhhchhhhhhhhccHH
Q psy15967 133 SDLFCLAKRDLWETLADYPEARH-SLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTV 190 (280)
Q Consensus 133 s~l~~l~~~~~~~lLa~~~~~~r-~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~~ 190 (280)
+ ++.||++.++++ +.++|++++|+++|+|......+.+.|.++|++..
T Consensus 171 t----------~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~~~L~~~~ 219 (238)
T 2bgc_A 171 T----------MQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYA 219 (238)
T ss_dssp C----------HHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHC
T ss_pred C----------HHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHh
Confidence 4 899999999999 79999999999999998777666677776665443
No 66
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=97.37 E-value=5.4e-06 Score=71.01 Aligned_cols=112 Identities=8% Similarity=-0.027 Sum_probs=84.0
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc--------cchhh-hhhhcchhhhhhcccccCCcccceEEEccccce
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ--------PMKLR-KTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDL 135 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~--------~~~~~-~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~l 135 (280)
+++.||.+.+..++..+|.+...+++.+..++. ..+.. +|++ .+|.......+.+.....+.++.+
T Consensus 103 ~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~Rl~---~~L~~~~~~~~~~~~~~~~~~~~t-- 177 (231)
T 3e97_A 103 RTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDELIAFGQNTEAALT---HVFANLYRQRLAAGVPQPEVLPLG-- 177 (231)
T ss_dssp EEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHTCSSTTEECCC--
T ss_pred EEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHH---HHHHHHHHhcCCCCCCceEecCCC--
Confidence 789999999999999999999999998885554 45667 8999 887643322221100011223334
Q ss_pred eeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccH
Q psy15967 136 FCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDT 189 (280)
Q Consensus 136 ~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~ 189 (280)
++.||++.+++++.++|++++|+++|+|......+.+.|.++|++.
T Consensus 178 --------~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~ 223 (231)
T 3e97_A 178 --------TQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLLDLAALEAL 223 (231)
T ss_dssp --------HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEESCHHHHHHC
T ss_pred --------HHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEeCHHHHHHH
Confidence 8999999999999999999999999999887777667777666543
No 67
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=97.35 E-value=1.7e-05 Score=68.17 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=81.6
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .+|...+...+ ......++.+
T Consensus 108 ~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~---~~L~~~~~~~~---~~~~~~l~~t- 180 (237)
T 3fx3_A 108 EVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQRVA---EFLLELCDCDT---GACEVTLPYD- 180 (237)
T ss_dssp EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH---HHHHHHCCC--------EEECCSC-
T ss_pred EEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHhhhcC---CCeEEEecCC-
Confidence 789999999999999999999999988885544 788899999 88864332211 1224455555
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhcc
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKD 188 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~ 188 (280)
++.||++.+++++.++|++++|+++|+ ......+.+.|.++|++
T Consensus 181 ---------~~~iA~~lg~sr~tvsR~l~~L~~~gi-~~~~~~i~I~d~~~L~~ 224 (237)
T 3fx3_A 181 ---------KMLIAGRLGMKPESLSRAFSRLKAAGV-TVKRNHAEIEDIALLRD 224 (237)
T ss_dssp ---------THHHHHHTTCCHHHHHHHHHHHGGGTE-ECCTTEEEESCHHHHHH
T ss_pred ---------HHHHHHHhCCCHHHHHHHHHHHHHCCe-EeeCCEEEEcCHHHHHH
Confidence 789999999999999999999999996 55555555666665553
No 68
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=97.10 E-value=0.0041 Score=52.42 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=61.5
Q ss_pred cccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHH
Q psy15967 122 RRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQ 201 (280)
Q Consensus 122 ~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~ 201 (280)
++.++++|+++|.++.+++++|.+++.++|.+...++..+..++..... .+......++..|++..|..+.
T Consensus 81 ~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~Rl~~~L~~l~ 151 (220)
T 2fmy_A 81 HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLT---------IINGLVFKDARLRLAEFLVQAA 151 (220)
T ss_dssp CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH---------HHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999988888876221 1122334588899999998887
Q ss_pred HHHH
Q psy15967 202 TRFA 205 (280)
Q Consensus 202 ~~~~ 205 (280)
.+++
T Consensus 152 ~~~g 155 (220)
T 2fmy_A 152 MDTG 155 (220)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7664
No 69
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=97.07 E-value=0.0035 Score=52.94 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=61.4
Q ss_pred CcccceEEEccccceeeechHHHHHHHhhC-----HHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccHHHHHHH
Q psy15967 121 NRRTANVRSLGYSDLFCLAKRDLWETLADY-----PEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDT 195 (280)
Q Consensus 121 ~~~~~~v~alt~s~l~~l~~~~~~~lLa~~-----~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~~~rl~~ 195 (280)
.++..+++|+++|.++.+++++|.+++.++ |.+...++..+..++..... ........++..|++.
T Consensus 96 ~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~---------~~~~l~~~~~~~Rl~~ 166 (230)
T 3iwz_A 96 DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTR---------KASRLAFLDVTDRIVR 166 (230)
T ss_dssp SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCHHHHHHH
T ss_pred CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH---------HHHHHhcCCHHHHHHH
Confidence 367889999999999999999999999999 99999999998888876221 1223334689999999
Q ss_pred HHHHHHHHH
Q psy15967 196 TLEHLQTRF 204 (280)
Q Consensus 196 ~l~~~~~~~ 204 (280)
.|..+..++
T Consensus 167 ~L~~l~~~~ 175 (230)
T 3iwz_A 167 TLHDLSKEP 175 (230)
T ss_dssp HHHHHTTST
T ss_pred HHHHHHHhh
Confidence 999887654
No 70
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=97.00 E-value=0.0035 Score=54.15 Aligned_cols=77 Identities=6% Similarity=0.001 Sum_probs=63.7
Q ss_pred cCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccHHHHHHHHHH
Q psy15967 119 TGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLE 198 (280)
Q Consensus 119 ~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~ 198 (280)
.+. +..+++|+++|.++.+++++|.+++.++|.+...++..+..++..... ........++..|++..|.
T Consensus 89 ~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~---------~~~~~~~~~~~~Rl~~~L~ 158 (250)
T 3e6c_C 89 PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYAR---------QVAEMNTYNPTIRILRLFY 158 (250)
T ss_dssp CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH---------HHHHHTTSCHHHHHHHHHH
T ss_pred CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH---------HHHHHhcCCHHHHHHHHHH
Confidence 355 888999999999999999999999999999999999999988876211 1223335689999999999
Q ss_pred HHHHHHH
Q psy15967 199 HLQTRFA 205 (280)
Q Consensus 199 ~~~~~~~ 205 (280)
.+..+++
T Consensus 159 ~l~~~~~ 165 (250)
T 3e6c_C 159 ELCSSQG 165 (250)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9988765
No 71
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=96.80 E-value=0.0033 Score=53.75 Aligned_cols=76 Identities=12% Similarity=-0.000 Sum_probs=60.8
Q ss_pred cCCc-ccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccHHHHHHHHH
Q psy15967 119 TGNR-RTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTL 197 (280)
Q Consensus 119 ~~~~-~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l 197 (280)
.+.+ +..+++|+++|.++.|++++|.+++.++|.+...++..+..++..... .+......++..|++..|
T Consensus 102 ~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~---------~~~~l~~~~~~~Rl~~~L 172 (232)
T 1zyb_A 102 GMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYS---------RLWDEPTLDLKSKIIRFF 172 (232)
T ss_dssp SSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHH---------HTTSCCCCSHHHHHHHHH
T ss_pred CCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH---------HHHHHhhcCHHHHHHHHH
Confidence 4555 889999999999999999999999999999999999988888865211 122333468899999999
Q ss_pred HHHHHH
Q psy15967 198 EHLQTR 203 (280)
Q Consensus 198 ~~~~~~ 203 (280)
..+..+
T Consensus 173 ~~l~~~ 178 (232)
T 1zyb_A 173 LSHCEK 178 (232)
T ss_dssp HTTCSS
T ss_pred HHHHhh
Confidence 877543
No 72
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=96.53 E-value=0.0059 Score=51.63 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=78.8
Q ss_pred CcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccHHHHHHHHHHHH
Q psy15967 121 NRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHL 200 (280)
Q Consensus 121 ~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~ 200 (280)
.++.++++|+++|.++.|++++|.+++.++|.+...++..+..++..... .+......++..|++..|..+
T Consensus 76 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~---------~~~~l~~~~~~~Rl~~~L~~l 146 (222)
T 1ft9_A 76 MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMR---------TIEDLMFHDIKQRIAGFFIDH 146 (222)
T ss_dssp SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH---------HHHHHHTHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH---------HHHHHhcCCHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999999998888876221 112223457888888888877
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh--hcccchhccccccccCCCCCCCCCCCCCc
Q psy15967 201 QTRFARLMAEYLSQQAKMKQRLALLE--QGASVNQATSSKRNSQAEPTHPEDVRNSK 255 (280)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 255 (280)
..+++....+ ...+..+++.-| .-..++..|-|..-++++..|.-...+++
T Consensus 147 ~~~~~~~~~~----~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 147 ANTTGRQTQG----GVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CBCCCSCC------CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred HHHhCCCCCC----cEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 6544321110 001222233333 11233333444444566777776665555
No 73
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=95.75 E-value=0.0097 Score=49.31 Aligned_cols=80 Identities=14% Similarity=0.048 Sum_probs=59.8
Q ss_pred hhhhhcccccCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccH
Q psy15967 110 SVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDT 189 (280)
Q Consensus 110 ~lL~~~~~~~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~ 189 (280)
.++.. +...+.++.++++|+++|.++.+++++|. |.+...++..+..++..... .+......+.
T Consensus 49 ~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~~~------p~~~~~~~~~l~~~l~~~~~---------~~~~l~~~~~ 112 (195)
T 3b02_A 49 DYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRAMD------HEALHRVARNLARQMRRVQA---------YEAHLQTGEL 112 (195)
T ss_dssp CEECG-GGGTCSBCSSEEEESSSEEEEEECGGGCC------HHHHHHHHHHHHHHHHHHHH---------HHHHHTSSCH
T ss_pred CEech-hhhCCCCceeEEEECCcEEEEEEcHHHcC------HHHHHHHHHHHHHHHHHHHH---------HHHHHhcCCH
Confidence 34443 33456788999999999999999999887 99999998888888876211 1223335688
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15967 190 VRRLDTTLEHLQTRFA 205 (280)
Q Consensus 190 ~~rl~~~l~~~~~~~~ 205 (280)
..|++..|..+..+++
T Consensus 113 ~~Rl~~~L~~l~~~~~ 128 (195)
T 3b02_A 113 RARIARYLLFLADTPL 128 (195)
T ss_dssp HHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999988876554
No 74
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=95.08 E-value=0.0027 Score=52.41 Aligned_cols=79 Identities=6% Similarity=-0.127 Sum_probs=30.5
Q ss_pred hhhccccccccccccCCCCchhhhHHhHHHhhc----------cchhhhhhhcchhhhhhcccccCCcccceEEEccccc
Q psy15967 65 HVLGVDLGRITSFCSKGYEIPNTKWLNLIVKAQ----------PMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSD 134 (280)
Q Consensus 65 ~v~~i~~~~l~~~~~~~~~~~~~~~~~l~~k~~----------~~~~~~rl~~~~~lL~~~~~~~~~~~~~~v~alt~s~ 134 (280)
+++.||.+.+..++.++|.+...+++.+..++. ..+.++|++ .++.. .+ ...+
T Consensus 105 ~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~Rl~---~~L~~------~~----~~~~---- 167 (194)
T 3dn7_A 105 ELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKFQHMYSKEEQYH---NFSSR------FP----EFIQ---- 167 (194)
T ss_dssp EEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------
T ss_pred EEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHH------Ch----HHHH----
Confidence 889999999999999999999999888875443 677888998 88742 11 1122
Q ss_pred eeeechHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15967 135 LFCLAKRDLWETLADYPEARHSLMERGCQLLR 166 (280)
Q Consensus 135 l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~ 166 (280)
.++ ++.||++.|++++.++|+++++.
T Consensus 168 --~~t----~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 168 --RVP----QYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp --------------------------------
T ss_pred --HCC----HHHHHHHhCCCHHHHHHHHHhhc
Confidence 334 88999999999999999998874
No 75
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=93.53 E-value=0.087 Score=43.56 Aligned_cols=71 Identities=20% Similarity=0.078 Sum_probs=53.7
Q ss_pred cCCcccceEEEccccceeeechHHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccHHHHHHHHHH
Q psy15967 119 TGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLE 198 (280)
Q Consensus 119 ~~~~~~~~v~alt~s~l~~l~~~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~ 198 (280)
.+.++..+++|+++|.++.+ +++|. |.+...++..+..++..... .+......+...|++..|.
T Consensus 65 ~~~~~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~~---------~~~~~~~~~~~~Rl~~~L~ 128 (202)
T 2zcw_A 65 FGQERIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQGLAEAYR---------RIERLATQRLKNRMAAALL 128 (202)
T ss_dssp HTCCBCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCHHHHHHHHHH
T ss_pred CCCCcceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHHHHHHHHH---------HHHHHhcCCHHHHHHHHHH
Confidence 36778889999999999999 88886 88888888888877765211 1222334688999999998
Q ss_pred HHHHHHH
Q psy15967 199 HLQTRFA 205 (280)
Q Consensus 199 ~~~~~~~ 205 (280)
.+..+++
T Consensus 129 ~l~~~~~ 135 (202)
T 2zcw_A 129 ELSETPL 135 (202)
T ss_dssp HHTTSTT
T ss_pred HHHHhcC
Confidence 8876553
No 76
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=80.00 E-value=4 Score=30.84 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=38.9
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+++|..+-..-.+...+++|++|.+++...+. ...+.+||++=..
T Consensus 37 ~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~---~~~l~~Gd~i~ip 87 (114)
T 3fjs_A 37 EVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA---QRRLHQGDLLYLG 87 (114)
T ss_dssp EEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE---EEEECTTEEEEEC
T ss_pred EEEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE---EEEECCCCEEEEC
Confidence 34556789999887666666789999999999886543 3678999987555
No 77
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=79.81 E-value=2.9 Score=34.58 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=41.3
Q ss_pred hhhhhcCCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEE--EcCCcEEEEEecCCCEecch
Q psy15967 4 PAYYSYTALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVV--ADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 4 p~~~~~~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~--~~dGe~il~~l~~GD~fGe~ 63 (280)
|.+....+....+.||..........+.+++|++|.+++. .++|. ....+.+||++-..
T Consensus 36 ~~~~~~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~~GDv~~~P 96 (178)
T 1dgw_A 36 ENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIKIQ 96 (178)
T ss_dssp GGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEEEC
T ss_pred CCcCcEEEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEECCCCEEEEC
Confidence 3333345667788999877555334679999999999987 34443 35689999987554
No 78
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=79.38 E-value=6.1 Score=30.45 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=36.2
Q ss_pred EEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 12 LNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 12 ~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
....+.+|..+-..- ..+.+++|++|.+.+.. ||+. ..+.+||++-..
T Consensus 43 ~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~-~g~~--~~l~~GD~v~ip 90 (119)
T 3lwc_A 43 GYGRYAPGQSLTETM-AVDDVMIVLEGRLSVST-DGET--VTAGPGEIVYMP 90 (119)
T ss_dssp EEEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE-TTEE--EEECTTCEEEEC
T ss_pred EEEEECCCCCcCccC-CCCEEEEEEeCEEEEEE-CCEE--EEECCCCEEEEC
Confidence 456778887765443 67899999999999987 4542 468999998655
No 79
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=78.49 E-value=2.3 Score=31.05 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=35.9
Q ss_pred CEEEEeCCCCEEEcCCCcCC-eEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGK-EMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~-~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|...-..-.+.. .+++|++|.+.+...||. -...+.+||.+=..
T Consensus 20 ~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~-~~~~l~~Gd~~~~p 72 (97)
T 2fqp_A 20 VTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGS-VTSQLTRGVSYTRP 72 (97)
T ss_dssp EEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEE-EEEEECTTCCEEEC
T ss_pred EEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCC-EEEEEcCCCEEEeC
Confidence 44567888876532222333 599999999999887762 23578999987555
No 80
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=77.45 E-value=5.5 Score=33.96 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=41.0
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+.+|+.+-..-.+.+.+++|++|.+++.-.+.. ..+.+||++=..
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~---~~l~~Gd~~~~p 88 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNK---KTISNGDFLEIT 88 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCE---EEEETTEEEEEC
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEE---EEECCCCEEEEC
Confidence 345678999999988878899999999999999865432 568899987555
No 81
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=76.54 E-value=4.6 Score=26.86 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy15967 188 DTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQRLALLEQG 228 (280)
Q Consensus 188 ~~~~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 228 (280)
+...-+.+.|..++.+|..+..+..+.-..|..|+..||+.
T Consensus 6 dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~s 46 (48)
T 3ci9_A 6 DLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 45567788999999999999999988889999999999953
No 82
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=76.27 E-value=3.7 Score=37.22 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=41.0
Q ss_pred chhhhhcCCEEEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEE--cCCcEEEEEecCCCEecch
Q psy15967 3 FPAYYSYTALNFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVA--DDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 3 fp~~~~~~~~~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~--~dGe~il~~l~~GD~fGe~ 63 (280)
||......+....+.+|...-..-.. ...+++|++|.+++.- ++|+.....+.+||++=..
T Consensus 46 ~p~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip 109 (361)
T 2vqa_A 46 FPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFP 109 (361)
T ss_dssp CTTCCSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEEC
T ss_pred CccccceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEEC
Confidence 33333334456678888875433233 6799999999999884 3455445789999987555
No 83
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=76.10 E-value=6.1 Score=29.28 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=33.9
Q ss_pred EEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 13 NFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 13 ~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
...+++|..+-....+...+++|++|.+.+...+ + ...+.+||++=..
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~-~--~~~l~~Gd~i~i~ 89 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITFDD-Q--KIDLVPEDVLMVP 89 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEETT-E--EEEECTTCEEEEC
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEECC-E--EEEecCCCEEEEC
Confidence 3446677665444455678999999999987644 2 3568999987555
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=75.80 E-value=6.7 Score=28.89 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=35.6
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-..-.....+++|++|.+.+...+.. ..+.+||++=..
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~~---~~l~~Gd~~~ip 91 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQET---YRVAEGQTIVMP 91 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEE---EEEETTCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCEE---EEECCCCEEEEC
Confidence 34557788887754444467899999999998764422 568899987544
No 85
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=75.48 E-value=4 Score=37.52 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=40.3
Q ss_pred cCCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCcEEEEEecCCCEecch
Q psy15967 9 YTALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 9 ~~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe~il~~l~~GD~fGe~ 63 (280)
+.+....+.+|..+-..-.+...+++|++|.+++.. .+|+.....+.+||++=..
T Consensus 79 ~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip 135 (385)
T 1j58_A 79 LASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFP 135 (385)
T ss_dssp CEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEEC
T ss_pred eEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEEC
Confidence 345567789998764433347899999999999884 3566555689999987554
No 86
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=73.93 E-value=7 Score=29.37 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=36.6
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-..-.+...+++|++|.+.+...++ ...+.+||++=..
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~~ip 92 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEE---TRVLRPGMAYTIP 92 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTE---EEEECTTEEEEEC
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCE---EEEeCCCCEEEEC
Confidence 4456788888775544456789999999999987553 2578899987554
No 87
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=73.52 E-value=7 Score=37.72 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=44.7
Q ss_pred Cchhhh--hcCCEEEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEE--cCCcEE-EEEecCCCEecch
Q psy15967 2 SFPAYY--SYTALNFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVA--DDEETV-LATLSAGSVFGEV 63 (280)
Q Consensus 2 ~fp~~~--~~~~~~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~--~dGe~i-l~~l~~GD~fGe~ 63 (280)
.||.+. .+.+....+.+|.++-..=.+ ++.+++|++|.+++.- ++|..+ ...+.+||+|=..
T Consensus 329 ~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP 396 (476)
T 1fxz_A 329 DFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVP 396 (476)
T ss_dssp TSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred cCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEEC
Confidence 466665 446777889999977544333 6799999999999873 446444 5689999987443
No 88
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=72.85 E-value=8.5 Score=27.86 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=35.4
Q ss_pred CEEEEeCCCCEEEcC--CCc-CCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRK--GDV-GKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~q--Gd~-~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-.. -.. ...+++|++|.+.+...+. ...+.+||++=..
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~~i~ 75 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH---TQALQAGSLIAIE 75 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE---EEEECTTEEEEEC
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEEEEC
Confidence 445678899877544 333 6789999999999886442 2568899986443
No 89
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=71.51 E-value=8.6 Score=28.86 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=35.2
Q ss_pred CEEEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-..-.. ...+++|++|.+.+...+|+. ..+.+||++=..
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~--~~l~~Gd~~~i~ 92 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIV--THLKAGDIAIAK 92 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCE--EEEETTEEEEEC
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeE--EEeCCCCEEEEC
Confidence 445677888887554444 367889999999987645543 467899987444
No 90
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=71.26 E-value=10 Score=26.83 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=34.5
Q ss_pred CEEEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-..-.. ...+++|++|.+.+...+. ...+.+||++=..
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~---~~~l~~Gd~~~ip 80 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE---EALLAPGMAAFAP 80 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE---EEEECTTCEEEEC
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEEEEC
Confidence 445678888887543333 3569999999999876542 3568899987444
No 91
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=71.06 E-value=7.8 Score=37.58 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=43.4
Q ss_pred Cchhhhh--cCCEEEEeCCCCEEEcCCC-cCCeEEEEeeeEEEEEE--cCCcEE-EEEecCCCEecch
Q psy15967 2 SFPAYYS--YTALNFVFSPGDYICRKGD-VGKEMYIVKRGKLNVVA--DDEETV-LATLSAGSVFGEV 63 (280)
Q Consensus 2 ~fp~~~~--~~~~~~~f~kGeiI~~qGd-~~~~iyiIlsG~Vkv~~--~dGe~i-l~~l~~GD~fGe~ 63 (280)
.||.+.. +.+....+.+|-.+-..=. .++.+++|++|.+++.- .+|..+ -..+.+||+|=..
T Consensus 358 ~~P~L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~vvP 425 (493)
T 2d5f_A 358 TLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVVP 425 (493)
T ss_dssp TSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred cCccccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEEEC
Confidence 4666655 4566677899987654333 36789999999999873 345555 4689999997544
No 92
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=70.90 E-value=8.6 Score=28.33 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=34.8
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-..-.+...+++|++|.+.+...+ + ...+.+||++=..
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~-~--~~~l~~Gd~~~ip 85 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDG-V--IKVLTAGDSFFVP 85 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETT-E--EEEECTTCEEEEC
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECC-E--EEEeCCCCEEEEC
Confidence 345567888775433334678999999999988643 3 3568999986544
No 93
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=70.46 E-value=21 Score=28.82 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=35.0
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-..-.....+++|++|.+.+...+. ...+.+||++=..
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~---~~~l~~Gd~i~ip 107 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR---VEPLTPLDCVYIA 107 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE---EEEECTTCEEEEC
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE---EEEECCCCEEEEC
Confidence 3455677887664444457889999999999876543 3568899986433
No 94
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=70.40 E-value=12 Score=27.93 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=34.5
Q ss_pred EEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 13 NFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 13 ~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
...+.+|..-.. .+...+++|++|.+.+...||+. ..+.+||++=..
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~--~~l~~GD~i~ip 81 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKK--YVIEKGDLVTFP 81 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCE--EEEETTCEEEEC
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCE--EEECCCCEEEEC
Confidence 456777776554 34578999999999998764543 568999987555
No 95
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=68.68 E-value=5.9 Score=30.91 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=33.7
Q ss_pred EEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 14 FVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 14 ~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
....+|..-.+..+ .+.+++|++|.+.+..++|+. ..+.+||++-..
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~--~~l~~GD~~~ip 100 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTV--HAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCE--EEEETTCEEEEC
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeE--EEECCCCEEEEC
Confidence 34556665544333 278999999999998767754 468899998666
No 96
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=68.61 E-value=9.6 Score=37.40 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=45.6
Q ss_pred Cchhhhh--cCCEEEEeCCCCEEEcCC-CcCCeEEEEeeeEEEEE--EcCCcE-EEEEecCCCEecch
Q psy15967 2 SFPAYYS--YTALNFVFSPGDYICRKG-DVGKEMYIVKRGKLNVV--ADDEET-VLATLSAGSVFGEV 63 (280)
Q Consensus 2 ~fp~~~~--~~~~~~~f~kGeiI~~qG-d~~~~iyiIlsG~Vkv~--~~dGe~-il~~l~~GD~fGe~ 63 (280)
.||.+.. +.+....+.+|-++-..= -.++.+.+|++|.+++. .++|.. +...+.+||+|=..
T Consensus 385 ~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P 452 (531)
T 3fz3_A 385 NLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVP 452 (531)
T ss_dssp TCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred cCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEEC
Confidence 5777774 456677889998885432 23678999999999987 445654 47889999997544
No 97
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=68.59 E-value=8.5 Score=34.80 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=39.6
Q ss_pred cCCEEEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEE--cCCcEEEEEecCCCEecch
Q psy15967 9 YTALNFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVA--DDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 9 ~~~~~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~--~dGe~il~~l~~GD~fGe~ 63 (280)
+.+....+++|..+-..-.+ ...+++|++|.+.+.- .+|+.....+.+||+|=..
T Consensus 234 ~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip 291 (361)
T 2vqa_A 234 MTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVP 291 (361)
T ss_dssp CEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEEC
T ss_pred ceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEEC
Confidence 44566788999877433333 4789999999999874 3565446789999998554
No 98
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=66.49 E-value=2.1 Score=31.92 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=36.1
Q ss_pred CEEEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecc
Q psy15967 11 ALNFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVADDEETVLATLSAGSVFGE 62 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe 62 (280)
.+...++||+-+-.+-.+ ...+|+|++|.+++...||......+.+||.+=.
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~i 71 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYAR 71 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEE
Confidence 445678999988655444 4467888999999998777544456788887533
No 99
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=66.28 E-value=11 Score=36.22 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=44.4
Q ss_pred Cchhhh--hcCCEEEEeCCCCEEEcCC-CcCCeEEEEeeeEEEEE--EcCCcEE-EEEecCCCEecch
Q psy15967 2 SFPAYY--SYTALNFVFSPGDYICRKG-DVGKEMYIVKRGKLNVV--ADDEETV-LATLSAGSVFGEV 63 (280)
Q Consensus 2 ~fp~~~--~~~~~~~~f~kGeiI~~qG-d~~~~iyiIlsG~Vkv~--~~dGe~i-l~~l~~GD~fGe~ 63 (280)
.||.+. ...+....+.+|-+....= -.+..+++|++|.+++. ..+|..+ -..+.+||+|=..
T Consensus 313 ~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P 380 (459)
T 2e9q_A 313 TLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIP 380 (459)
T ss_dssp TSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred cCccccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEEC
Confidence 467777 4456677888998775332 33679999999999988 3446555 4689999997444
No 100
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=66.23 E-value=8.9 Score=37.42 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=43.1
Q ss_pred Cchhhh--hcCCEEEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEE--cCCcEE-EEEecCCCEecch
Q psy15967 2 SFPAYY--SYTALNFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVA--DDEETV-LATLSAGSVFGEV 63 (280)
Q Consensus 2 ~fp~~~--~~~~~~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~--~dGe~i-l~~l~~GD~fGe~ 63 (280)
.||.+. .+.+....+.+|.++-..=.+ +..+++|++|.+.+.- ++|..+ ...+.+||+|=..
T Consensus 363 ~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP 430 (510)
T 3c3v_A 363 NLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVP 430 (510)
T ss_dssp TSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred cCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEEC
Confidence 466665 335566788999876543333 6799999999999873 446444 5689999987433
No 101
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=65.30 E-value=12 Score=31.84 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=38.8
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+++|+.+-..-.+...+++|++|.+.+...+. ...+.+||++=..
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~---~~~l~~Gd~i~ip 204 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK---PFIVKKGESAVLP 204 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE---EEEEETTEEEEEC
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE---EEEECCCCEEEEC
Confidence 34567889999987655566789999999999886442 3678899987555
No 102
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=63.94 E-value=19 Score=29.92 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=40.8
Q ss_pred chhhhhc--CCEEEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEEcC-----CcEEEEEecCCCEecch
Q psy15967 3 FPAYYSY--TALNFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVADD-----EETVLATLSAGSVFGEV 63 (280)
Q Consensus 3 fp~~~~~--~~~~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~~d-----Ge~il~~l~~GD~fGe~ 63 (280)
||.+... .+....+.+|...-..-.+ ...+++|++|.+.+.-.+ ++.+...+.+||+|-..
T Consensus 64 ~p~l~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP 132 (201)
T 1fi2_A 64 WPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIP 132 (201)
T ss_dssp CGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEEC
T ss_pred CCCcccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEEC
Confidence 4444433 3445678888876433333 579999999999987432 34346789999998655
No 103
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=63.37 E-value=8.8 Score=29.97 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=34.1
Q ss_pred EeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 15 VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 15 ~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
...+|..-+...+ .+.+++|++|.+.+..+||+. ..+.+||.|-..
T Consensus 48 e~tPG~~~~~~~~-~~E~~~iLeG~~~lt~ddG~~--~~l~aGD~~~~P 93 (116)
T 3es4_A 48 MAEPGIYNYAGRD-LEETFVVVEGEALYSQADADP--VKIGPGSIVSIA 93 (116)
T ss_dssp EECSEEEEECCCS-EEEEEEEEECCEEEEETTCCC--EEECTTEEEEEC
T ss_pred ecCCceeECeeCC-CcEEEEEEEeEEEEEeCCCeE--EEECCCCEEEEC
Confidence 4566665555533 347889999999999888863 468999998766
No 104
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=61.03 E-value=9.7 Score=31.14 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=35.9
Q ss_pred CEEEEeCCCCEEE---cCCCcCCeEEEEeeeEEEEEEcCC-cEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYIC---RKGDVGKEMYIVKRGKLNVVADDE-ETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~---~qGd~~~~iyiIlsG~Vkv~~~dG-e~il~~l~~GD~fGe~ 63 (280)
+....+++|...- ....+...+++|++|.+.+.-.++ ..-...+.+||++=..
T Consensus 119 ~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~ 175 (198)
T 2bnm_A 119 PLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVE 175 (198)
T ss_dssp EEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEEC
T ss_pred EEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeC
Confidence 3445678887653 223334688999999999986552 2235689999987555
No 105
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=60.29 E-value=11 Score=29.58 Aligned_cols=48 Identities=23% Similarity=0.135 Sum_probs=33.4
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+-...+.+|..-... ..+.+++|++|.+.+... |+. ..+.+||.|-..
T Consensus 59 ~~~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~~-g~~--~~l~~GD~i~~p 106 (133)
T 2pyt_A 59 AGFMQWDNAFFPWTL--NYDEIDMVLEGELHVRHE-GET--MIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEEEEEC--SSEEEEEEEEEEEEEEET-TEE--EEEETTCEEEEC
T ss_pred EEEEEECCCCccccC--CCCEEEEEEECEEEEEEC-CEE--EEECCCcEEEEC
Confidence 345567788432222 357899999999999875 543 379999998766
No 106
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=60.10 E-value=31 Score=27.97 Aligned_cols=47 Identities=9% Similarity=0.142 Sum_probs=30.8
Q ss_pred EEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 14 FVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 14 ~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
..+.+|..+-..-.....+++|++|.+.+...+ + ...+.+||++=..
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g-~--~~~l~~GD~i~ip 104 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVGR-A--VSAVAPYDLVTIP 104 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEETT-E--EEEECTTCEEEEC
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECC-E--EEEeCCCCEEEEC
Confidence 345566554333334567889999999987644 2 3578899986433
No 107
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=59.65 E-value=20 Score=32.66 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=38.4
Q ss_pred CCEEEEeCCCCEEEcCCCcC-CeEEEEeeeEEEEEE--cCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVG-KEMYIVKRGKLNVVA--DDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~-~~iyiIlsG~Vkv~~--~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+++|...-..-.+. ..+++|++|.+++.- .+|+.....+.+||+|=..
T Consensus 258 ~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ip 314 (385)
T 1j58_A 258 ASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVP 314 (385)
T ss_dssp EEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEEC
T ss_pred EEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEEC
Confidence 45566788888774433334 789999999999873 4564345678999997555
No 108
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=59.38 E-value=13 Score=29.24 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=26.8
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHcccchH
Q psy15967 144 WETLADYPEARHSLMERGCQLLRKDGLLDE 173 (280)
Q Consensus 144 ~~lLa~~~~~~r~~lsr~~~rL~~~gli~~ 173 (280)
...|++..++.+..+++.+.+|.+.|++..
T Consensus 55 ~~eLa~~l~~~~~tvsr~v~~Le~~glVr~ 84 (148)
T 4fx0_A 55 MSELAARIGVERTTLTRNLEVMRRDGLVRV 84 (148)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSBC-
T ss_pred HHHHHHHHCCChhhHHHHHHHHHHCCCEEe
Confidence 578899999999999999999999999854
No 109
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=59.06 E-value=12 Score=29.69 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=34.6
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcC------CcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADD------EETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~d------Ge~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-..-.....+++|++|.+.+...+ ++.-...+.+||++=..
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip 101 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIP 101 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEEC
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEEC
Confidence 345567888765222223457999999999998655 12134678999986443
No 110
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=57.77 E-value=12 Score=27.73 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=32.3
Q ss_pred EEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 12 LNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 12 ~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
....+++|..+-..-.....+++|++|.+.+...+... ..+.+||++=..
T Consensus 30 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~--~~l~~Gd~i~ip 79 (117)
T 2b8m_A 30 NHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEP--HNYKEGNIVYVP 79 (117)
T ss_dssp EEEEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCC--EEEETTCEEEEC
T ss_pred EEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEE--EEeCCCCEEEEC
Confidence 34456677654222224567899999999988755432 267899986444
No 111
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=57.67 E-value=11 Score=31.23 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=35.3
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+++|...-..-.....+++|++|.+.+.-.+|+. ..+.+||.+ ..
T Consensus 80 ~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~--~~L~~GDsi-~~ 130 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAK--RTVRQGGII-VQ 130 (172)
T ss_dssp EEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCE--EEECTTCEE-EE
T ss_pred EEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeE--EEECCCCEE-Ee
Confidence 3455678888754333333456789999999998665543 568999998 55
No 112
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=56.79 E-value=25 Score=25.23 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=33.8
Q ss_pred CEEEEeCCCCEEEcCCCcC-CeE-EEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVG-KEM-YIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~-~~i-yiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+.+|..+-..-... ..+ ++|++|.+.+...+|+. ..+.+||++=..
T Consensus 35 ~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~--~~l~~Gd~~~ip 87 (110)
T 2q30_A 35 IVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAV--IPAPRGAVLVAP 87 (110)
T ss_dssp EEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCE--EEECTTEEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEE--EEECCCCEEEeC
Confidence 3445678888775433222 456 79999999988653432 568899987554
No 113
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=55.69 E-value=34 Score=27.44 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=30.5
Q ss_pred EEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecc
Q psy15967 13 NFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGE 62 (280)
Q Consensus 13 ~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe 62 (280)
...+++|..+-..-.....+++|++|.+++...+ + ...+.+||++=.
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g-~--~~~l~~Gd~i~i 94 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGE-T--ISDVAQGDLVFI 94 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEETT-E--EEEEETTCEEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEECC-E--EEEeCCCCEEEE
Confidence 3345566554333334567899999999988644 2 356889998633
No 114
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=55.17 E-value=21 Score=31.00 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=36.7
Q ss_pred EEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 12 LNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 12 ~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
-...+.+|...=.--.+.+.+|+|++|.++....+|+. ..+.+||++=..
T Consensus 135 G~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~--~~l~pGd~v~ip 184 (217)
T 4b29_A 135 TVGYWGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPD--LMLEPGQTRFHP 184 (217)
T ss_dssp EEEEECSSCEEEEEECSSEEEEEEEEECEEEEETTSCC--EEECTTCEEEEC
T ss_pred EEEEECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCE--EecCCCCEEEcC
Confidence 34567888776555566889999999999988765542 467899986544
No 115
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=54.85 E-value=34 Score=27.67 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=34.8
Q ss_pred CEEEEeCCCCEEEc--CCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICR--KGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~--qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..... .......+++|++|.+.+...+ + ...+.+||++=..
T Consensus 106 ~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~-~--~~~l~~GD~i~i~ 157 (192)
T 1y9q_A 106 IFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDE-Q--WHELQQGEHIRFF 157 (192)
T ss_dssp EEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETT-E--EEEECTTCEEEEE
T ss_pred EEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECC-E--EEEeCCCCEEEEc
Confidence 34457788887652 2233468999999999987643 2 2478999987554
No 116
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=53.90 E-value=27 Score=27.40 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=35.2
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-..-.....+++|++|.+.+...+.. ...+.+||++=..
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~--~~~l~~Gd~i~ip 100 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKP--ARILKKGDVVEIP 100 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSC--CEEEETTCEEEEC
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEECCEE--EEEECCCCEEEEC
Confidence 34567788887643333447899999999998865543 1457899987544
No 117
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=53.25 E-value=16 Score=27.74 Aligned_cols=49 Identities=27% Similarity=0.315 Sum_probs=32.3
Q ss_pred EEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 12 LNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 12 ~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
....+++|..+-..-.....+++|++|.+.+...+.. ..+.+||++=..
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~---~~l~~Gd~i~ip 99 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGE---ETVEEGFYIFVE 99 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSCE---EEEETTEEEEEC
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCEE---EEECCCCEEEEC
Confidence 3445666665533333467899999999998754432 467889886444
No 118
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=53.23 E-value=21 Score=26.71 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=33.7
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|...-..-.....+++|++|.+.+...+. ...+.+||++=..
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~---~~~l~~Gd~~~i~ 85 (128)
T 4i4a_A 36 GAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE---DFPVTKGDLIIIP 85 (128)
T ss_dssp EEEEEECTTEECCCBCCSSEEEEEEEESEEEEEETTE---EEEEETTCEEEEC
T ss_pred EEEEEECCCCccCCEecCCeEEEEEEeCEEEEEECCE---EEEECCCcEEEEC
Confidence 3445667776443333346789999999999887543 3568899987554
No 119
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=52.80 E-value=16 Score=34.89 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=39.7
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEE--EcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVV--ADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~--~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....++||..+-..-...+.+++|++|.+.+. .+++. ....+.+||++-..
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~~P 141 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIKIQ 141 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEEEC
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEEEEC
Confidence 4455688999877655555789999999999887 34444 46789999997554
No 120
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=52.40 E-value=18 Score=34.18 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=41.6
Q ss_pred hcCCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcC-CcEEEEEecCCCEecch
Q psy15967 8 SYTALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADD-EETVLATLSAGSVFGEV 63 (280)
Q Consensus 8 ~~~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~d-Ge~il~~l~~GD~fGe~ 63 (280)
.+.+....+.||..+...--.++.+++|++|.+.+--.+ +......+.+||+|-..
T Consensus 43 ~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~~P 99 (418)
T 3s7i_A 43 NHRIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIP 99 (418)
T ss_dssp TCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEEC
T ss_pred ceEEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEEEC
Confidence 345566678888888776556889999999999887322 33446889999998655
No 121
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=52.31 E-value=29 Score=26.56 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=32.5
Q ss_pred EEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 13 NFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 13 ~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
...+++|..+-..-.. ...+++|++|.+.+...+. ...+.+||++=..
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~---~~~l~~Gd~i~i~ 109 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK---DVPIKAGDVCFTD 109 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE---EEEEETTEEEEEC
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEECCE---EEEeCCCcEEEEC
Confidence 4567888766332222 3679999999999876442 3567899986444
No 122
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=52.25 E-value=24 Score=34.26 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=44.4
Q ss_pred Cchhhhhc--CCEEEEeCCCCEEEcCC-CcCCeEEEEeeeEEEEE--EcCCcEE-EEEecCCCEecch
Q psy15967 2 SFPAYYSY--TALNFVFSPGDYICRKG-DVGKEMYIVKRGKLNVV--ADDEETV-LATLSAGSVFGEV 63 (280)
Q Consensus 2 ~fp~~~~~--~~~~~~f~kGeiI~~qG-d~~~~iyiIlsG~Vkv~--~~dGe~i-l~~l~~GD~fGe~ 63 (280)
.||.+..+ .+....+.+|-+.--.= -.+..+.+|++|.+++. .++|..+ -..+.+||+|=..
T Consensus 349 ~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P 416 (496)
T 3ksc_A 349 DLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVP 416 (496)
T ss_dssp TSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred HCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEEEC
Confidence 46777654 45667888888774332 34778999999999988 4556555 4689999997444
No 123
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=52.23 E-value=27 Score=29.97 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=37.5
Q ss_pred CCEEEEeCCCCEEEc-CCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICR-KGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~-qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+...+++||..+-. .-......++|++|.+.+... |+ ...+.+||++-..
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~-~~--~~~l~~GD~~~~~ 217 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLE-EN--YYPVTAGDIIWMG 217 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEET-TE--EEEEETTCEEEEC
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEEC-CE--EEEcCCCCEEEEC
Confidence 456678899987753 445567899999999998764 33 2478999987655
No 124
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=51.43 E-value=15 Score=29.06 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=32.6
Q ss_pred CEEEEeCCCCE-E-EcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEe
Q psy15967 11 ALNFVFSPGDY-I-CRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVF 60 (280)
Q Consensus 11 ~~~~~f~kGei-I-~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~f 60 (280)
+....+++|.. . .+.......+++|++|.+.+...+. ...+.+||++
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~---~~~l~~Gd~i 96 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEND---QYPIAPGDFV 96 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTE---EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCE---EEEeCCCCEE
Confidence 34567888874 2 2222245789999999999886442 2568999987
No 125
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=51.15 E-value=35 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=27.3
Q ss_pred CeEEEEeeeEEEEEEcC--CcEEEEEecCCCEecch
Q psy15967 30 KEMYIVKRGKLNVVADD--EETVLATLSAGSVFGEV 63 (280)
Q Consensus 30 ~~iyiIlsG~Vkv~~~d--Ge~il~~l~~GD~fGe~ 63 (280)
..+++|++|.+.+...+ |+.+...+.+||++=..
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip 132 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVP 132 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEEC
T ss_pred CEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEEC
Confidence 58999999999998544 66667789999987544
No 126
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=51.12 E-value=16 Score=29.39 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=34.8
Q ss_pred CCEEEEeCCCCEEE--cCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYIC--RKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~--~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+++|.... +.....+.+++|++|.+.+...+. ...+.+||++-..
T Consensus 44 ~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~---~~~l~~GD~i~ip 96 (163)
T 3i7d_A 44 GVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG---EHPMVPGDCAAFP 96 (163)
T ss_dssp EEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE---EEEECTTCEEEEC
T ss_pred EEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE---EEEeCCCCEEEEC
Confidence 34566788888542 222233689999999999986553 3578899986444
No 127
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=50.48 E-value=20 Score=33.96 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEc-CCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVAD-DEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~-dGe~il~~l~~GD~fGe~ 63 (280)
.+....+.||..+-..-...+.+++|++|...+... ++......+.+||++-..
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP 116 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIP 116 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEEC
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEEC
Confidence 356678899998876655578999999999998742 333346789999987554
No 128
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=50.22 E-value=20 Score=33.81 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=39.7
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE-cCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA-DDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~-~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+.||..+-..-...+.+++|++|...+.- .+|......+.+||++-..
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP 104 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIP 104 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEEC
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEEC
Confidence 35677889998776665567899999999999873 2233345789999987544
No 129
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=50.10 E-value=26 Score=26.18 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=31.8
Q ss_pred CEEEEeCCCCEEE--cCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYIC--RKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~--~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+- ..-+....+|+|++|.+.+...+. ...+.+||++=..
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~---~~~l~~Gd~i~i~ 79 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGE---KIELQAGDWLRIA 79 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTE---EEEEETTEEEEEC
T ss_pred EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCE---EEEeCCCCEEEEC
Confidence 4455678887652 222333457779999999876442 2567888876443
No 130
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=49.45 E-value=36 Score=26.48 Aligned_cols=52 Identities=10% Similarity=-0.056 Sum_probs=33.9
Q ss_pred EEEEeCCCCEEEcCC-CcCCeEEEEeeeEEEEEEcCCc---EEEEEecCCCEecch
Q psy15967 12 LNFVFSPGDYICRKG-DVGKEMYIVKRGKLNVVADDEE---TVLATLSAGSVFGEV 63 (280)
Q Consensus 12 ~~~~f~kGeiI~~qG-d~~~~iyiIlsG~Vkv~~~dGe---~il~~l~~GD~fGe~ 63 (280)
....+++|..+-..- .....+++|++|.+.+...+.. ..-..+.+||++=..
T Consensus 46 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip 101 (148)
T 2oa2_A 46 TLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIP 101 (148)
T ss_dssp EEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEEC
T ss_pred EEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEEC
Confidence 345677877653222 2345899999999999865532 123578899986444
No 131
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=49.28 E-value=12 Score=27.26 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=29.7
Q ss_pred CCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 17 SPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 17 ~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+|+......+....+++|++|.+.+...+|+ ...+.+||++=..
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~--~~~l~~Gd~~~ip 80 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFADGG--SMTIREGEMAVVP 80 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETTSC--EEEECTTEEEEEC
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECCCc--EEEECCCCEEEEC
Confidence 34443333333337899999999999876633 3568999987555
No 132
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=48.94 E-value=23 Score=30.29 Aligned_cols=48 Identities=8% Similarity=0.048 Sum_probs=35.1
Q ss_pred EEEeCC-CCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 13 NFVFSP-GDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 13 ~~~f~k-GeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
...+++ |..+-..-.+...+++|++|.+.+...++. ..+.+||++-..
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~---~~l~~Gd~i~ip 197 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCT---VEMKFGTAYFCE 197 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEETTEE---EEECTTCEEEEC
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCEE---EEECCCCEEEEC
Confidence 456888 877654444567899999999998765532 458999987665
No 133
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=48.91 E-value=27 Score=29.27 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=27.8
Q ss_pred cCCeEEEEeeeEEEEEEcC-CcEEEEEecCCCEecch
Q psy15967 28 VGKEMYIVKRGKLNVVADD-EETVLATLSAGSVFGEV 63 (280)
Q Consensus 28 ~~~~iyiIlsG~Vkv~~~d-Ge~il~~l~~GD~fGe~ 63 (280)
+.+.++++++|.+.+...| |+.---.+.+||+|=-.
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP 90 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLP 90 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEEC
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeC
Confidence 5678999999999998544 54445678999998554
No 134
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=48.77 E-value=24 Score=30.09 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=33.2
Q ss_pred EEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCE
Q psy15967 12 LNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSV 59 (280)
Q Consensus 12 ~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~ 59 (280)
....+++|..+-..-.+...+++|++|.+.+...+ + ...+.+||.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~-~--~~~l~~Gd~ 81 (243)
T 3h7j_A 37 LMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGD-V--TRKMTALES 81 (243)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEESEEEEEETT-E--EEEEETTTC
T ss_pred EEEEECCCCccCCEECCCcEEEEEEEeEEEEEECC-E--EEEECCCCE
Confidence 44568888887655555778999999999998744 3 256889983
No 135
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=48.38 E-value=26 Score=33.73 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=44.0
Q ss_pred Cchhhh--hcCCEEEEeCCCCEEEcC-CCcCCeEEEEeeeEEEEE--EcCCcE-EEEEecCCCEecch
Q psy15967 2 SFPAYY--SYTALNFVFSPGDYICRK-GDVGKEMYIVKRGKLNVV--ADDEET-VLATLSAGSVFGEV 63 (280)
Q Consensus 2 ~fp~~~--~~~~~~~~f~kGeiI~~q-Gd~~~~iyiIlsG~Vkv~--~~dGe~-il~~l~~GD~fGe~ 63 (280)
.||.+. .+.+....+.+|-+.--. .-.+..+.+|++|.+++. .++|.. +...+.+||+|=..
T Consensus 314 ~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P 381 (466)
T 3kgl_A 314 DLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIP 381 (466)
T ss_dssp TCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred hCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEEEC
Confidence 467776 445666778888776432 223678999999999988 455654 47789999997544
No 136
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=47.57 E-value=25 Score=26.26 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=32.0
Q ss_pred eCCCCEEEc---CCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 16 FSPGDYICR---KGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 16 f~kGeiI~~---qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
..+|+.... .....+.+++|++|.+.+.-.+++. ...+.+||++=..
T Consensus 37 ~~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~~~~-~~~l~~Gd~i~ip 86 (112)
T 2opk_A 37 ISNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGDTA-PRVMRPGDWLHVP 86 (112)
T ss_dssp EESSCCCCTTCCBCCSSEEEEEEEESCEEEEETTCSS-CEEECTTEEEEEC
T ss_pred EeCCccCCCCccccCCccEEEEEEeCeEEEEECCEEE-EEEECCCCEEEEC
Confidence 355655433 2345668999999999998766431 1468999987665
No 137
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=45.88 E-value=23 Score=29.78 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=27.2
Q ss_pred CcCCeEEEEeeeEEEEEEcC-C----cEEEEEecCCCEecch
Q psy15967 27 DVGKEMYIVKRGKLNVVADD-E----ETVLATLSAGSVFGEV 63 (280)
Q Consensus 27 d~~~~iyiIlsG~Vkv~~~d-G----e~il~~l~~GD~fGe~ 63 (280)
++.+.++++++|.+.+...| | +..--.+.+||+|=-.
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP 93 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLP 93 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEEC
T ss_pred CCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcC
Confidence 34568999999999998433 5 2235678999998554
No 138
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=45.11 E-value=42 Score=29.47 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=37.6
Q ss_pred CCEEEEeCCCCEEEc-CCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICR-KGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~-qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+++|..|-. +-..-.+.++|++|+..+... |+ ...+.+||++-..
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~-~~--~~~v~~GD~~~~~ 243 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLN-QD--WVEVEAGDFMWLR 243 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEET-TE--EEEEETTCEEEEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEEC-CE--EEEeCCCCEEEEC
Confidence 466788999999964 445556889999999987754 32 3568899986444
No 139
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=43.18 E-value=21 Score=33.57 Aligned_cols=52 Identities=10% Similarity=0.023 Sum_probs=39.0
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+++|+.+-..-.....+|+|++|.-.....||+. ..+.+||+|=..
T Consensus 124 ~a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~--~~~~~GD~i~~P 175 (394)
T 3bu7_A 124 FSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHK--VELGANDFVLTP 175 (394)
T ss_dssp EEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEE--EEECTTCEEEEC
T ss_pred EEEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEE--EEEcCCCEEEEC
Confidence 3467789999998665555668999999997665667753 468899987554
No 140
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=42.65 E-value=44 Score=31.37 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=42.8
Q ss_pred Cchhhhhc--CCEEEEeCCCCEEEcC-CCcCCeEEEEeeeEEEEE--EcCC--------------cEEEEEecCCCEecc
Q psy15967 2 SFPAYYSY--TALNFVFSPGDYICRK-GDVGKEMYIVKRGKLNVV--ADDE--------------ETVLATLSAGSVFGE 62 (280)
Q Consensus 2 ~fp~~~~~--~~~~~~f~kGeiI~~q-Gd~~~~iyiIlsG~Vkv~--~~dG--------------e~il~~l~~GD~fGe 62 (280)
.||.+..+ .+....+.+|-+.... .-.+..+++|++|..++. .++| +.+...+.+||+|=.
T Consensus 240 ~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vv 319 (416)
T 1uij_A 240 KNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVI 319 (416)
T ss_dssp TCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEEE
T ss_pred HCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEEE
Confidence 47777665 3447788888776432 234678999999998887 4555 134568999999754
Q ss_pred h
Q psy15967 63 V 63 (280)
Q Consensus 63 ~ 63 (280)
.
T Consensus 320 P 320 (416)
T 1uij_A 320 P 320 (416)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=41.88 E-value=48 Score=28.80 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=35.3
Q ss_pred CEEEEeCCCCEEEc-CCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICR-KGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~-qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-. .-.....+++|++|.+.+.-.+ + ...+.+||++=..
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~-~--~~~l~~GD~i~i~ 234 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDN-E--WYPVEKGDYIFMS 234 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETT-E--EEEEETTCEEEEC
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECC-E--EEEECCCCEEEEC
Confidence 44557888887643 3335678899999999987644 2 3578899987544
No 142
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=41.58 E-value=33 Score=32.19 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=38.2
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEE--EcCCcEEEEEecCCCE
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVV--ADDEETVLATLSAGSV 59 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~--~~dGe~il~~l~~GD~ 59 (280)
.+....+.+|..+...-..++.+++|++|...+. .+++.. ...+.+||+
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~-~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR-EYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE-EEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE-EEEECCCCc
Confidence 4666788999887655557789999999999887 455553 678999999
No 143
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=41.44 E-value=30 Score=28.85 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=36.4
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....|.+|..+-....+...+++|++|... .++ ..+.+||++=..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~--de~-----~~~~~Gd~~~~p 172 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR--DET-----DRFGAGDIEIAD 172 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE--CSS-----SEEETTCEEEEC
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE--CCc-----EEECCCeEEEeC
Confidence 34677899999998888888899999999965 222 248899987554
No 144
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=41.44 E-value=34 Score=27.71 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=25.4
Q ss_pred cCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 28 VGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 28 ~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
..+.+++|++|.+.+.. ||+ ...+.+||.|=..
T Consensus 83 ~~eE~~yVLeG~~~l~i-~g~--~~~l~~GD~i~iP 115 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-DGR--KVSASSGELIFIP 115 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-TTE--EEEEETTCEEEEC
T ss_pred CCcEEEEEEEeEEEEEE-CCE--EEEEcCCCEEEEC
Confidence 35678899999999986 554 3568999987555
No 145
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=40.78 E-value=54 Score=28.03 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=33.3
Q ss_pred EEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 12 LNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 12 ~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
....+++|...-..- .+.+++|++|.+.+.-.+ + ...+.+||++=..
T Consensus 53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~-~--~~~l~~Gd~~~~p 99 (246)
T 1sfn_A 53 FTAEMPAGAQATESV--YQRFAFVLSGEVDVAVGG-E--TRTLREYDYVYLP 99 (246)
T ss_dssp EEEEECTTCEEECCS--SEEEEEEEEEEEEEECSS-C--EEEECTTEEEEEC
T ss_pred EEEEECCCCcCCCCc--eeEEEEEEECEEEEEECC-E--EEEECCCCEEEEC
Confidence 445778887665442 677889999999987544 3 2568899987554
No 146
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=40.54 E-value=34 Score=29.93 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=26.8
Q ss_pred CCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 29 GKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 29 ~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+.+.+|++|.+.+..++|+. ..+++||.|-..
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~~--~~~~aGD~~~~P 218 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGSS--LTVNTGDTVFVA 218 (238)
T ss_dssp SCEEEEEEECCEEEEETTSCE--EEECTTCEEEEC
T ss_pred CCEEEEEEEeEEEEEeCCCCE--EEECCCCEEEEC
Confidence 356788899999999888864 468999998665
No 147
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=40.11 E-value=36 Score=31.67 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=38.4
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+.+|+.+-..-.....+|+|++|.-..+..||+. ..+.+||+|=..
T Consensus 104 ~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~--~~~~~GD~v~iP 155 (368)
T 3nw4_A 104 WAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDP--VRMSRGDLLLTP 155 (368)
T ss_dssp EEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTEE--EEEETTCEEEEC
T ss_pred EEEEEEECCCCccCceecccceEEEEEecceEEEEECCEE--EEEeCCCEEEEC
Confidence 4566789999988766556779999999998544556643 357899987554
No 148
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=39.89 E-value=64 Score=30.98 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=43.9
Q ss_pred Cchhhhhc--CCEEEEeCCCCEEEcC-CCcCCeEEEEeeeEEEEE--EcCCcEE-EEEecCCCEecch
Q psy15967 2 SFPAYYSY--TALNFVFSPGDYICRK-GDVGKEMYIVKRGKLNVV--ADDEETV-LATLSAGSVFGEV 63 (280)
Q Consensus 2 ~fp~~~~~--~~~~~~f~kGeiI~~q-Gd~~~~iyiIlsG~Vkv~--~~dGe~i-l~~l~~GD~fGe~ 63 (280)
.||.+..+ .+....+.+|-+.-.. .-.++.+.+|++|.+++. .++|..+ -..+.+||+|=..
T Consensus 314 ~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvvP 381 (465)
T 3qac_A 314 NLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVP 381 (465)
T ss_dssp TSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEEC
T ss_pred HCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEEC
Confidence 47777664 4556778888877432 223678999999999887 4556555 5679999997544
No 149
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=37.36 E-value=33 Score=31.40 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=37.0
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|...-..-.....+++|++|...+...||+ ...+.+||+|=..
T Consensus 102 ~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g~--~~~l~~GD~~~iP 152 (354)
T 2d40_A 102 AGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGE--RTPMNEGDFILTP 152 (354)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTE--EEECCTTCEEEEC
T ss_pred EEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECCE--EEEEcCCCEEEEC
Confidence 45667899988743334467899999999877545654 3579999998554
No 150
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=36.87 E-value=38 Score=27.89 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=31.3
Q ss_pred EEEeCC-CCE-EEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 13 NFVFSP-GDY-ICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 13 ~~~f~k-Gei-I~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
...+++ |.. =-........+++|++|.+.+.-.+ + ...+.+||+|=..
T Consensus 92 ~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g-~--~~~L~~Gds~~iP 141 (166)
T 2vpv_A 92 ILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCK-N--KFLSVKGSTFQIP 141 (166)
T ss_dssp EEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETT-E--EEEEETTCEEEEC
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECC-E--EEEEcCCCEEEEC
Confidence 346677 431 1112234567999999999998744 2 3478999987555
No 151
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=36.49 E-value=42 Score=31.50 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=37.3
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+++|+..-..-.....+|+|++|...+.. ||+ ...+.+||+|=..
T Consensus 295 ~~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V-~ge--~~~~~~GD~~~iP 345 (394)
T 3bu7_A 295 GASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV-GGK--RFDWSEHDIFCVP 345 (394)
T ss_dssp EEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE-TTE--EEEECTTCEEEEC
T ss_pred eEEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE-CCE--EEEEeCCCEEEEC
Confidence 34667888888876555566789999999985544 553 3568999998665
No 152
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=36.46 E-value=53 Score=24.65 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=25.1
Q ss_pred CeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 30 KEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 30 ~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
..+++|++|.+.+...+++ ...+.+||++=..
T Consensus 65 ~E~~~vl~G~~~~~~~~~~--~~~l~~Gd~~~ip 96 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYEDIG--AVMLEAGGSAFQP 96 (134)
T ss_dssp CEEEEEEESEEEEEETTTE--EEEEETTCEEECC
T ss_pred cEEEEEEeCEEEEEECCcE--EEEecCCCEEEEC
Confidence 7899999999999876643 3568899987554
No 153
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=35.29 E-value=23 Score=26.91 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=28.1
Q ss_pred EEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE-cCCcEEEEEecCCCEecch
Q psy15967 14 FVFSPGDYICRKGDVGKEMYIVKRGKLNVVA-DDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 14 ~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~-~dGe~il~~l~~GD~fGe~ 63 (280)
..+++|..+-..-.....+++|++|.+.+.. .+|+ ...+.+||++=..
T Consensus 44 ~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~--~~~l~~Gd~~~ip 92 (145)
T 3ht1_A 44 FEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR--TEEVGPGEAIFIP 92 (145)
T ss_dssp EEEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE--EEEECTTCEEEEC
T ss_pred EEECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE--EEEECCCCEEEEC
Confidence 3445554432222223455679999999882 3443 3568899976443
No 154
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=34.75 E-value=41 Score=23.58 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=23.8
Q ss_pred CCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 29 GKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 29 ~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
...+++|++|.+.+...+.. ..+.+||++=..
T Consensus 50 ~~e~~~v~~G~~~~~~~~~~---~~l~~Gd~~~ip 81 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRDQN---ITLQAGEMYVIP 81 (102)
T ss_dssp CCEEEEEEESEEEEECSSCE---EEEETTEEEEEC
T ss_pred CcEEEEEEeCEEEEEECCEE---EEEcCCCEEEEC
Confidence 37899999999998754432 457899987554
No 155
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=34.26 E-value=64 Score=28.27 Aligned_cols=50 Identities=22% Similarity=0.129 Sum_probs=35.0
Q ss_pred CEEEEeCCCCEEEcCCCc-CCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDV-GKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~-~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+.+|...-..-.. ...+++|++|.+.+.. +|+. ..+.+||++=..
T Consensus 48 ~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~~~~--~~l~~Gd~~~~p 98 (337)
T 1y3t_A 48 IVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-DGER--YLLISGDYANIP 98 (337)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-TTEE--EEECTTCEEEEC
T ss_pred EEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE-CCEE--EEECCCCEEEEC
Confidence 345577888876333233 7789999999999885 3432 578999987554
No 156
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=34.25 E-value=76 Score=28.04 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=38.0
Q ss_pred CCEEEEeCCCCEEE-cCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYIC-RKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~-~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+...+|+||-.+= .+-..-.+.++|++|+..+...+. ...+.+||++=..
T Consensus 187 ~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~~---~~~V~~GD~i~~~ 238 (266)
T 4e2q_A 187 NIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDN---WYPVQAGDVIWMA 238 (266)
T ss_dssp EEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETTE---EEEEETTCEEEEC
T ss_pred EEEEEEECCCcCcCCceEcccceEEEEEeceEEEEECCE---EEEecCCCEEEEC
Confidence 56778899999994 466666799999999998775442 3567899976444
No 157
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=32.83 E-value=57 Score=30.83 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=42.4
Q ss_pred CchhhhhcC--CEEEEeCCCCEEEcC-CCcCCeEEEEeeeEEEEE--EcCC----------c---EEEEEecCCCEecch
Q psy15967 2 SFPAYYSYT--ALNFVFSPGDYICRK-GDVGKEMYIVKRGKLNVV--ADDE----------E---TVLATLSAGSVFGEV 63 (280)
Q Consensus 2 ~fp~~~~~~--~~~~~f~kGeiI~~q-Gd~~~~iyiIlsG~Vkv~--~~dG----------e---~il~~l~~GD~fGe~ 63 (280)
.||.+..+. +....+.+|-+.... .-.+..+++|++|..++. .++| . .+...+.+||+|=..
T Consensus 257 ~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP 336 (434)
T 2ea7_A 257 KNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIP 336 (434)
T ss_dssp TCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEEC
T ss_pred hCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEEEEC
Confidence 467776653 457788898877432 233678999999998887 3433 2 335689999997444
No 158
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=32.71 E-value=46 Score=28.58 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=34.1
Q ss_pred CEEEEeCCCCEEEcCC-CcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKG-DVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qG-d~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|..+-..- .....+++|++|.+.+.-.+ + ...+.+||++=..
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~-~--~~~l~~GD~i~~~ 231 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDN-N--WIPVKKGDYIFMG 231 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSS-C--EEEEETTCEEEEC
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECC-E--EEEeCCCCEEEEC
Confidence 4566788887653222 23567999999999987543 3 2468899987544
No 159
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=32.61 E-value=40 Score=25.34 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=27.0
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHcccchH
Q psy15967 144 WETLADYPEARHSLMERGCQLLRKDGLLDE 173 (280)
Q Consensus 144 ~~lLa~~~~~~r~~lsr~~~rL~~~gli~~ 173 (280)
...|++..++++..+++.+++|.+.|++.-
T Consensus 44 ~~ela~~l~~~~stvs~~l~~L~~~G~v~r 73 (152)
T 1ku9_A 44 ISDIMEELKISKGNVSMSLKKLEELGFVRK 73 (152)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 468888899999999999999999999864
No 160
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=31.83 E-value=53 Score=29.60 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=29.8
Q ss_pred EEEcCCCcCCeEEEEeeeEEEEEEcC-CcEEEEEecCCCEecch
Q psy15967 21 YICRKGDVGKEMYIVKRGKLNVVADD-EETVLATLSAGSVFGEV 63 (280)
Q Consensus 21 iI~~qGd~~~~iyiIlsG~Vkv~~~d-Ge~il~~l~~GD~fGe~ 63 (280)
..|+ -+..+.+|++++|.+.+.-.| |+.---.+++||+|=-.
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP 86 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLP 86 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEEC
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeC
Confidence 4455 455678999999999998434 64334568999998444
No 161
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=30.55 E-value=49 Score=29.29 Aligned_cols=51 Identities=8% Similarity=-0.071 Sum_probs=33.8
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|.---......+.+.+|++|.+.+.-.+|+. ..+.+||.|=..
T Consensus 72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~~--~~L~~Gds~y~p 122 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSS--KKLTVDSYAYLP 122 (266)
T ss_dssp EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CCC--EEECTTEEEEEC
T ss_pred EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCcE--EEEcCCCEEEEC
Confidence 456677887753223344678999999999998653432 468888876444
No 162
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=29.95 E-value=17 Score=26.87 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=34.1
Q ss_pred CEEEEeCCCCEEEcCCCcCC-eEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGK-EMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~-~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....++||..+-..-...+ .++++.+|.+.+..+||+.....+.+||++...
T Consensus 19 v~~~~l~PG~~~~~H~H~~~~~iv~v~~G~~~~~~~dG~~~~~~l~aGd~~~~p 72 (98)
T 2ozi_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARK 72 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEEC
T ss_pred EEEEEECCCCccCcEeCCCCEEEEEEeeEEEEEEeCCCcEEEEEECCCCEEEEC
Confidence 44567888888732222222 333457999999887886334569999998766
No 163
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=29.16 E-value=45 Score=29.29 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=32.4
Q ss_pred EEEEeCCCCEEEc--CCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 12 LNFVFSPGDYICR--KGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 12 ~~~~f~kGeiI~~--qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
....+++|...-. .....+.+++|++|.+.+...+. ...+.+||++=..
T Consensus 71 ~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~---~~~L~~GD~i~ip 121 (278)
T 1sq4_A 71 YIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQ---VHAMQPGGYAFIP 121 (278)
T ss_dssp EEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSC---EEEECTTEEEEEC
T ss_pred EEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCE---EEEECCCCEEEEC
Confidence 4456677766511 22335689999999999986543 2468899986444
No 164
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=28.83 E-value=72 Score=28.90 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=26.2
Q ss_pred CCeEEEEeeeEEEEEEc--CCcEEEEEecCCCEecch
Q psy15967 29 GKEMYIVKRGKLNVVAD--DEETVLATLSAGSVFGEV 63 (280)
Q Consensus 29 ~~~iyiIlsG~Vkv~~~--dGe~il~~l~~GD~fGe~ 63 (280)
...+++|++|.+.+.-. +|+.-...+.+||++=..
T Consensus 71 ~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip 107 (350)
T 1juh_A 71 HYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVP 107 (350)
T ss_dssp CEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEEC
T ss_pred ceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEEC
Confidence 46788899999999842 454445679999987554
No 165
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=28.48 E-value=50 Score=26.62 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=27.8
Q ss_pred cCCCcCCeEEEEeeeEEEEEEcC---C--cEEEEEecCCCEecch
Q psy15967 24 RKGDVGKEMYIVKRGKLNVVADD---E--ETVLATLSAGSVFGEV 63 (280)
Q Consensus 24 ~qGd~~~~iyiIlsG~Vkv~~~d---G--e~il~~l~~GD~fGe~ 63 (280)
+..+.-+.+|+|++|.+.+.-.| + +.-.-.+.||+++=-.
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP 89 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP 89 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC
Confidence 34455688999999999998432 1 1225668999987544
No 166
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=27.84 E-value=42 Score=26.44 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=34.4
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEE-EEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETV-LATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~i-l~~l~~GD~fGe~ 63 (280)
+....+++|..+-....+....++|++|..... +|+.. -..+.+||++=..
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~--~g~~~~~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR--GGKAAGGDTAIAPGYGYES 97 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEET--TCGGGTSEEEESSEEEEEC
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc--CCCEecceEeCCCEEEEEC
Confidence 456788999988766666777899999999842 23211 1345677776444
No 167
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=26.92 E-value=69 Score=29.19 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=36.3
Q ss_pred CEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+....+++|...-..-.+...+|+|++|..++.- ||+ ...+.+||+|=-.
T Consensus 270 ~~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v-~~~--~~~~~~GD~~~vP 319 (354)
T 2d40_A 270 AFLQLLPKGFASRVARTTDSTIYHVVEGSGQVII-GNE--TFSFSAKDIFVVP 319 (354)
T ss_dssp EEEEEECTTCBCCCBEESSCEEEEEEEEEEEEEE-TTE--EEEEETTCEEEEC
T ss_pred eEEEEECCCCCCCceecCCcEEEEEEeCeEEEEE-CCE--EEEEcCCCEEEEC
Confidence 4566777777665444456689999999998876 443 3578999998665
No 168
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=26.28 E-value=49 Score=28.43 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=32.2
Q ss_pred EEEEeCCCCEEEcCC--CcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 12 LNFVFSPGDYICRKG--DVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 12 ~~~~f~kGeiI~~qG--d~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
....+++|...-..- ...+.+++|++|.+++.-.+ + ...+.+||++-..
T Consensus 62 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~-~--~~~L~~Gd~~~~~ 112 (261)
T 1rc6_A 62 YLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEG-K--TFALSEGGYLYCP 112 (261)
T ss_dssp EEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETT-E--EEEEETTEEEEEC
T ss_pred EEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECC-E--EEEECCCCEEEEC
Confidence 345667776543221 22467899999999998643 3 2568899987655
No 169
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=25.29 E-value=83 Score=23.94 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=29.8
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhc
Q psy15967 144 WETLADYPEARHSLMERGCQLLRKDGLLDEEAFRN 178 (280)
Q Consensus 144 ~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~ 178 (280)
...|++..++++..+..++.+|..+|++.....+.
T Consensus 40 ~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 74 (125)
T 3neu_A 40 VREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCE
Confidence 56889999999999999999999999997654433
No 170
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=24.60 E-value=78 Score=30.20 Aligned_cols=61 Identities=7% Similarity=0.024 Sum_probs=41.3
Q ss_pred hhhhhc--CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEE--cCCc---------------------EEEEEecCCC
Q psy15967 4 PAYYSY--TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVA--DDEE---------------------TVLATLSAGS 58 (280)
Q Consensus 4 p~~~~~--~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~--~dGe---------------------~il~~l~~GD 58 (280)
|.|.++ .+....+.+|-++...=.....+++|++|...+-. +++. +.+..+.+||
T Consensus 56 ~~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GD 135 (459)
T 2e9q_A 56 DEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGD 135 (459)
T ss_dssp HHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTE
T ss_pred hhhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCC
Confidence 444433 34456788888875444558899999999998873 3432 1256899999
Q ss_pred Eecchh
Q psy15967 59 VFGEVR 64 (280)
Q Consensus 59 ~fGe~~ 64 (280)
+|-...
T Consensus 136 v~~iPa 141 (459)
T 2e9q_A 136 LLVVPA 141 (459)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 986653
No 171
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=24.13 E-value=2e+02 Score=26.64 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=37.2
Q ss_pred CCEEEEeCCCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 10 TALNFVFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 10 ~~~~~~f~kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
.+....+++|+..-..-.....+|.|++|.-.+.-.+ + ...+.+||+|-..
T Consensus 280 ~~~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~-~--~~~w~~gD~fvvP 330 (368)
T 3nw4_A 280 RCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNG-E--TTKLEKGDMFVVP 330 (368)
T ss_dssp EEEEEEECTTCBCCCEEESSCEEEEEEESCEEEEETT-E--EEEECTTCEEEEC
T ss_pred HhheEEECCCCccCCeeccccEEEEEEeCcEEEEECC-E--EEEecCCCEEEEC
Confidence 3455677888777555566779999999998876543 2 2458999998666
No 172
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=23.73 E-value=1.2e+02 Score=28.38 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=36.5
Q ss_pred CEEEEeCCCCEEEcC-CCcCCeEEEEeeeEEEEE--Ec------CC-cEEEEEecCCCEecch
Q psy15967 11 ALNFVFSPGDYICRK-GDVGKEMYIVKRGKLNVV--AD------DE-ETVLATLSAGSVFGEV 63 (280)
Q Consensus 11 ~~~~~f~kGeiI~~q-Gd~~~~iyiIlsG~Vkv~--~~------dG-e~il~~l~~GD~fGe~ 63 (280)
+....+.+|-+.... .-.+..+++|++|..++. .+ +| +.....+.+||+|=..
T Consensus 241 ~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vvP 303 (397)
T 2phl_A 241 ISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIP 303 (397)
T ss_dssp EEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEEC
T ss_pred EEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEEC
Confidence 344567777665432 233678999999988877 45 45 4458889999998554
No 173
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=23.24 E-value=41 Score=24.24 Aligned_cols=29 Identities=10% Similarity=-0.078 Sum_probs=26.6
Q ss_pred HHHHhhCHHHHHH-HHHHHHHHHHHcccch
Q psy15967 144 WETLADYPEARHS-LMERGCQLLRKDGLLD 172 (280)
Q Consensus 144 ~~lLa~~~~~~r~-~lsr~~~rL~~~gli~ 172 (280)
...||+.++++.. .+++.+..|.++|++.
T Consensus 28 a~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 28 ALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 4788999999999 9999999999999986
No 174
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=22.92 E-value=89 Score=28.28 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=33.8
Q ss_pred CCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 18 PGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 18 kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+|+.+-..-.+.+.+++|++|.+++.-.+.+ ...+.+||+|=..
T Consensus 261 ~g~~~~~h~~~~~~~~~vleG~~~i~i~g~~--~~~l~~Gd~~~iP 304 (350)
T 1juh_A 261 STVTVPTWSFPGACAFQVQEGRVVVQIGDYA--ATELGSGDVAFIP 304 (350)
T ss_dssp TTSCCCCBCCSSCEEEEEEESCEEEEETTSC--CEEECTTCEEEEC
T ss_pred CCCCCCcccCCCcEEEEEEeeEEEEEECCeE--EEEeCCCCEEEEC
Confidence 4666666667788999999999998875523 2578999987655
No 175
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=22.55 E-value=1.1e+02 Score=25.25 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=31.1
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchh
Q psy15967 144 WETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQ 180 (280)
Q Consensus 144 ~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~ 180 (280)
...|++..+++|..+..++.+|..+|++.....+...
T Consensus 38 e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~ 74 (218)
T 3sxy_A 38 VRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFF 74 (218)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceE
Confidence 5688999999999999999999999999765554443
No 176
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=22.37 E-value=55 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=30.2
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhch
Q psy15967 144 WETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNS 179 (280)
Q Consensus 144 ~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~ 179 (280)
...|++..+++|..++.++++|..+|++.....+..
T Consensus 42 E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~ 77 (222)
T 3ihu_A 42 ETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGA 77 (222)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCe
Confidence 468889999999999999999999999976544433
No 177
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=22.34 E-value=93 Score=27.04 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCCEEEcCCCcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 18 PGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 18 kGeiI~~qGd~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
+|+..... -+.+.+.+|++|.+.+.. +|+.+ .+++||.+-..
T Consensus 55 ~g~~~v~~-~p~dE~~~VleG~~~lt~-~g~~~--~~~~Gd~~~ip 96 (238)
T 3myx_A 55 GTALSVEA-YPYTEMLVMHRGSVTLTS-GTDSV--TLSTGESAVIG 96 (238)
T ss_dssp CSEEEESS-CSSEEEEEEEESEEEEEE-TTEEE--EEETTCEEEEC
T ss_pred cccccccc-CCCcEEEEEEEeEEEEEC-CCeEE--EEcCCCEEEEC
Confidence 55554422 234689999999999987 55433 48899986444
No 178
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=22.19 E-value=67 Score=27.83 Aligned_cols=49 Identities=20% Similarity=0.082 Sum_probs=31.9
Q ss_pred EEEEeCCCCEEEcCC--CcCCeEEEEeeeEEEEEEcCCcEEEEEecCCCEecch
Q psy15967 12 LNFVFSPGDYICRKG--DVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEV 63 (280)
Q Consensus 12 ~~~~f~kGeiI~~qG--d~~~~iyiIlsG~Vkv~~~dGe~il~~l~~GD~fGe~ 63 (280)
....+++|...-..- ...+.+++|++|.+++.-.+ + ...+.+||++-..
T Consensus 65 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~-~--~~~L~~GD~~~~~ 115 (274)
T 1sef_A 65 YIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQ-E--THELEAGGYAYFT 115 (274)
T ss_dssp EEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSS-C--EEEEETTEEEEEC
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECC-E--EEEECCCCEEEEC
Confidence 345667776543321 22457899999999987543 3 2568899987555
No 179
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=21.79 E-value=1.3e+02 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHcccchHH
Q psy15967 144 WETLADYPEARHSLMERGCQLLRKDGLLDEE 174 (280)
Q Consensus 144 ~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~ 174 (280)
...+++..++++..+++.+++|.+.|++...
T Consensus 34 ~~ela~~l~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 34 INRIAKDLKIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCEEec
Confidence 4678888999999999999999999998643
No 180
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=21.41 E-value=30 Score=23.64 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=26.6
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHcccchH
Q psy15967 144 WETLADYPEARHSLMERGCQLLRKDGLLDE 173 (280)
Q Consensus 144 ~~lLa~~~~~~r~~lsr~~~rL~~~gli~~ 173 (280)
-..|++..++.+..+.+.++.|++.|+|..
T Consensus 28 ~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 28 IFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 467899999999999999999999999743
No 181
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=20.18 E-value=42 Score=25.15 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=29.4
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhh
Q psy15967 144 WETLADYPEARHSLMERGCQLLRKDGLLDEEAFR 177 (280)
Q Consensus 144 ~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~ 177 (280)
...|++..++++..+..++.+|..+|++......
T Consensus 36 ~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 36 IRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 5688999999999999999999999999654443
No 182
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=20.18 E-value=43 Score=23.89 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=24.8
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHcccchH
Q psy15967 146 TLADYPEARHSLMERGCQLLRKDGLLDE 173 (280)
Q Consensus 146 lLa~~~~~~r~~lsr~~~rL~~~gli~~ 173 (280)
.+++..+++...+++.+++|.+.|++.-
T Consensus 31 ~la~~l~is~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 31 KVNAEFPMSTATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCEEE
Confidence 3389999999999999999999999853
No 183
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.05 E-value=2.8e+02 Score=20.70 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=51.1
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHcccchHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy15967 141 RDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQ 220 (280)
Q Consensus 141 ~~~~~lLa~~~~~~r~~lsr~~~rL~~~gli~~~~~~~~~~~~~~l~~~~~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 220 (280)
++|...|.++.+....-+..+..++...+-- . ....++.+..++.+...+.+.+......-..++.
T Consensus 12 r~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sW---q-----------Dqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~ 77 (94)
T 3fx7_A 12 REFVGHLERFKELLREEVNSLSNHFHNLESW---R-----------DARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKE 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSC---C-----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchH---h-----------hHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHH
Confidence 5667778888887787888888777764411 1 1344566777777777777777776666778888
Q ss_pred HHHHHhh
Q psy15967 221 RLALLEQ 227 (280)
Q Consensus 221 ~~~~~e~ 227 (280)
+|.-+|.
T Consensus 78 ~i~vle~ 84 (94)
T 3fx7_A 78 RIRVLEE 84 (94)
T ss_dssp HHHHHHH
T ss_pred HHHHhHH
Confidence 8888774
Done!