RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15967
(280 letters)
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 36.4 bits (83), Expect = 0.001
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVVADDE---ETVLATLSAGSVFGEV 63
+ + +G+ + +Y + +G + V+ DE E +L+ L+ G GE+
Sbjct: 18 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGEL 68
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 35.9 bits (82), Expect = 0.002
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 119 TGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRK 167
T R A+ ++G + + L E + + L
Sbjct: 90 TNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVA 138
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 35.5 bits (81), Expect = 0.002
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 119 TGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMER 160
R A V + G L + L + +++
Sbjct: 85 MNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 126
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 33.2 bits (75), Expect = 0.010
Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 46/162 (28%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRIT 75
++ I GD + ++ + +G + ++ +D++ G G +
Sbjct: 17 YTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDG--------REMIIGYLNSGDFFGELG 68
Query: 76 SFCSKGYEIPNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDL 135
F + R+A VR+ ++
Sbjct: 69 LFE-------------------------------------KEGSEQERSAWVRAKVECEV 91
Query: 136 FCLAKRDLWETLADYPEARHSLMERGCQLLRK-DGLLDEEAF 176
++ E E ++L + LRK + + AF
Sbjct: 92 AEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAF 133
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 33.9 bits (76), Expect = 0.013
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 116 GNRTGNRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRK 167
T RRTA+VR+ Y L+ L+ + E L +YP R + L +
Sbjct: 142 CLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 193
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 32.0 bits (72), Expect = 0.026
Identities = 12/142 (8%), Positives = 26/142 (18%), Gaps = 50/142 (35%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRHVLGVDLGRIT 75
G+++ +GD G Y++ G + D
Sbjct: 44 VKEGEHVIDQGDDGDNFYVI-----------------------DRGTFDIYVKCDGVGRC 80
Query: 76 SFCSKGYEIPNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSLGYSDL 135
L R A + + L
Sbjct: 81 VGNYDNRGSFGELALM---------------------------YNTPRAATITATSPGAL 113
Query: 136 FCLAKRDLWETLADYPEARHSL 157
+ L + + + +
Sbjct: 114 WGLDRVTFRRIIVKNNAKKRKM 135
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 31.7 bits (71), Expect = 0.046
Identities = 3/47 (6%), Positives = 13/47 (27%)
Query: 121 NRRTANVRSLGYSDLFCLAKRDLWETLADYPEARHSLMERGCQLLRK 167
++ ++ S + + + L ++ + L
Sbjct: 85 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGY 131
Score = 27.1 bits (59), Expect = 1.6
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRG 38
+ +GD+ ++ + G
Sbjct: 29 CKKASTVFSEGDIPNNLFYLYEG 51
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator
BT4300, N-terminal domain {Bacteroides thetaiotaomicron
[TaxId: 818]}
Length = 147
Score = 30.7 bits (68), Expect = 0.085
Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNVV---ADDEETVLATLSAGSVFGEVRH 65
G+ I + G+ ++ + +G++++V ++ TV+ + A +
Sbjct: 36 HKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSL 88
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase
A {Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 30.5 bits (68), Expect = 0.097
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGK 39
F G+ + ++GD G Y++ +G+
Sbjct: 48 FIAGETVIQQGDEGDNFYVIDQGE 71
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains
1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 29.3 bits (65), Expect = 0.21
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNV 42
G + +G+ G YI+ +G +NV
Sbjct: 39 AKGGTVLFNQGEEGTSWYIILKGSVNV 65
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 137
Score = 28.8 bits (63), Expect = 0.39
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 47/142 (33%)
Query: 15 VFSPGDYICRKGDVGKEMYIVKRGKLNVVADDEE----TVLATLSAGSVFGEVRHVLGVD 70
+F+ Y+ R+GD EM + RG+L V D + L G G+ +D
Sbjct: 33 LFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALD 92
Query: 71 LGRITSFCSKGYEIPNTKWLNLIVKAQPMKLRKTVLNKVSVLEIAGNRTGNRRTANVRSL 130
G +P++ V++L
Sbjct: 93 -------PKSGSNLPSSTR------------------------------------TVKAL 109
Query: 131 GYSDLFCLAKRDLWETLADYPE 152
+ F L +L + +
Sbjct: 110 TEVEAFALIADELKFVASQFRR 131
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 28.4 bits (62), Expect = 0.47
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 16 FSPGDYICRKGDVGK--EMYIVKRGKLNVV 43
F GD I G G Y V G + +
Sbjct: 5 FKAGDVILYPGVPGPRDRAYRVLEGLVRLE 34
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
7242]}
Length = 107
Score = 28.0 bits (62), Expect = 0.50
Identities = 15/103 (14%), Positives = 33/103 (32%)
Query: 142 DLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQ 201
DL + D A + R L D +HE + + + LQ
Sbjct: 4 DLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQ 63
Query: 202 TRFARLMAEYLSQQAKMKQRLALLEQGASVNQATSSKRNSQAE 244
T +L+A+ + ++ + + + ++ S+
Sbjct: 64 TVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLG 106
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 27.2 bits (60), Expect = 0.88
Identities = 12/93 (12%), Positives = 33/93 (35%)
Query: 147 LADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFAR 206
+A+ E + E+ + +D A + +HEA + + +
Sbjct: 3 VANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGED 62
Query: 207 LMAEYLSQQAKMKQRLALLEQGASVNQATSSKR 239
L+ + + ++ L+ S + +++R
Sbjct: 63 LIKKNNHHVENITAKMKGLKGKVSDLEKAAAQR 95
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 27.2 bits (60), Expect = 1.2
Identities = 7/56 (12%), Positives = 14/56 (25%)
Query: 172 DEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFARLMAEYLSQQAKMKQRLALLEQ 227
R +HEA + + +E + L + R +
Sbjct: 46 SLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICD 101
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium
loti [TaxId: 381]}
Length = 133
Score = 27.0 bits (59), Expect = 1.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 16 FSPGDYICRKGDVGKEMYIVKRGKLNV 42
G ICR G+ G M+ V G ++V
Sbjct: 39 VPAGAVICRIGEPGDRMFFVVEGSVSV 65
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 27.2 bits (59), Expect = 2.1
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 2 SFPAYYSYTALNFVFSPGDYICRKG-DVGKEMYIVKRGKLNVVADDEETVLATLSAGSVF 60
+ ++ GD I + E + G++ + D +E L V
Sbjct: 207 QKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQEIQLNPGDFLHVP 266
Query: 61 GEVRH 65
H
Sbjct: 267 ANTVH 271
Score = 26.0 bits (56), Expect = 5.0
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 31 EMYIVKRGKLNVVADDEETVLATLSAGSVFGEVRH 65
E +V GKL + D E +L + ++ H
Sbjct: 65 EGILVLDGKLELTLDGERYLLISGDYANIPAGTPH 99
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 110
Score = 26.1 bits (57), Expect = 2.6
Identities = 14/98 (14%), Positives = 36/98 (36%)
Query: 147 LADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHLQTRFAR 206
+ L E L +D D + N +H+ L+ + + L+ L ++
Sbjct: 8 NTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADS 67
Query: 207 LMAEYLSQQAKMKQRLALLEQGASVNQATSSKRNSQAE 244
LM +++K + + ++ ++ R ++
Sbjct: 68 LMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLN 105
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 132
Score = 26.1 bits (56), Expect = 3.4
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 15 VFSPGDYICRKGDVGKEMYIVKRGKLN 41
+ + G +C +++V G+L
Sbjct: 26 IHAKGSLVCTGEGDENGVFVVVDGRLR 52
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 103
Score = 25.5 bits (56), Expect = 3.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 182 EHEALKDTVRRLDTTLEHLQTRFAR 206
E + D +R LD TL L ++A
Sbjct: 18 ETDDGADVIRWLDRTLIKLCQKYAD 42
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 25.9 bits (56), Expect = 4.0
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 141 RDLWETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNSQVEHEALKDTVRRLDTTLEHL 200
L D + +ME+ +L D + +H++L+ V+ + L
Sbjct: 53 YHLQVFKRDADDLGKWIMEK-VNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSEL 111
Query: 201 QTRFARLMAEYLSQQAKMKQRLALLEQ 227
+ S + K + L
Sbjct: 112 EKTREERFTMGHSAHEETKAHIEELRH 138
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 76
Score = 24.4 bits (53), Expect = 5.8
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 154 RHSLMERGCQLLRKDGLLDEEAFRNS-QVEHEALKDTVRRLDTTLEHLQT 202
+H L ER L+ GL EE + + EH +D RRL L + T
Sbjct: 14 KHRLAER--LLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTT 61
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 25.6 bits (55), Expect = 5.9
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 16 FSPGDYICRKGDVGKEMYIV 35
G + R+GD+G Y V
Sbjct: 52 LEKGITLFRQGDIGTNWYAV 71
>d1vqqa1 d.17.4.5 (A:27-138) Penicillin binding protein 2a (PBP2A),
N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 112
Score = 24.7 bits (54), Expect = 8.0
Identities = 3/28 (10%), Positives = 14/28 (50%)
Query: 192 RLDTTLEHLQTRFARLMAEYLSQQAKMK 219
++ T++ ++ + + + + S +K
Sbjct: 3 EINNTIDAIEDKNFKQVYKDSSYISKSD 30
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR
{Bacillus subtilis [TaxId: 1423]}
Length = 74
Score = 23.6 bits (51), Expect = 9.7
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 145 ETLADYPEARHSLMERGCQLLRKDGLLDEEAFRNS-QVEHEALKDTVRRLDTTLEHLQT 202
+ + RH L+E+ LR G+ +E+ + + +EH +++ R+ +++ +
Sbjct: 5 KKIGKRLVYRHELLEQ---FLRIIGVDEEKIYNDVEGIEHHLSWNSIDRIGDLVQYFEE 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0440 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 977,343
Number of extensions: 42502
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 37
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)