BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15968
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 60/87 (68%)
Query: 6 RERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWD 65
E +F AAV +IQ+LPK+G Q ML+FY+ YKQATEGP +P FWD + + KWD
Sbjct: 24 HETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWD 83
Query: 66 AWTKLGDMSKEAAMQRYIDEFINIVDS 92
AW+ LGDM+KE AM Y++E I+++
Sbjct: 84 AWSSLGDMTKEEAMIAYVEEMKKIIET 110
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%)
Query: 7 ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
+++F AAVS+IQNLPK+G + ML+FY+ YKQAT GP P+P FWD + + KWDA
Sbjct: 9 QKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDA 68
Query: 67 WTKLGDMSKEAAMQRYIDE 85
W LG MS+E AM YI E
Sbjct: 69 WNSLGKMSREEAMSAYITE 87
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 38/51 (74%)
Query: 34 LQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTKLGDMSKEAAMQRYID 84
L+ YALYKQATEGP N PKP +D++ K KWDAW LG + KEAA Q Y+D
Sbjct: 40 LKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVD 90
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 9 KFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWT 68
KF AV I+Q+LPK GPI+ + L FY +KQAT G N +P D K KWDAW
Sbjct: 7 KFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWK 66
Query: 69 KLGDMSKEAAMQRYIDEFINIVDSTLGSDVEDMVKSLGTL 108
+ SKE A Q+Y+++ + I+ +D E+ K + +
Sbjct: 67 SVEGTSKEVAYQKYVEKLLEILKK---ADTEESKKYIAEI 103
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 31/51 (60%)
Query: 33 MLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTKLGDMSKEAAMQRYI 83
+L YA YKQ G N PKP+F+D K KW+AW LGD S AMQ YI
Sbjct: 31 LLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYI 81
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 10 FYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTK 69
F A ++NL K+ P + ML Y+ YKQAT G N +P D K KWDAW +
Sbjct: 5 FDKAAEEVKNL-KTKPAD---DEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQ 60
Query: 70 LGDMSKEAAMQRYIDE 85
L SKE AM+ YID+
Sbjct: 61 LKGTSKEDAMKSYIDK 76
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Tetragonal Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In
Tetragonal Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In
Tetragonal Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme
A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A
Binding Protein From Bovine Liver. Structural
Refinement Using Heteronuclear Multidimensional Nmr
Spectroscopy
Length = 86
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 33 MLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTKLGDMSKEAAMQRYID 84
ML Y+ YKQAT G N +P D K KWDAW +L SKE AM+ YID
Sbjct: 24 MLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYID 75
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein
From Yeast
Length = 86
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 25 PIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTKLGDMSKEAAMQRYI 83
P + + +L+ YALYKQAT G N++ KP +++ + KW+AW L S+E A + YI
Sbjct: 16 PTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYI 74
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 10 FYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTK 69
F AAV + N + + + L FY YKQAT G N+PKP + K KW+AW
Sbjct: 14 FDAAVKYVSN---TTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNA 70
Query: 70 LGDMSKEAAMQRYI 83
L MS E+A + Y+
Sbjct: 71 LRGMSTESAKEAYV 84
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human
L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human
L-Acbp
Length = 87
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 33 MLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTKLGDMSKEAAMQRYID 84
ML Y YKQAT G N +P D K KWDAW +L SKE AM+ YI+
Sbjct: 25 MLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYIN 76
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded
Human Acbp
Length = 86
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 33 MLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTKLGDMSKEAAMQRYID 84
ML Y YKQAT G N +P D K KWDAW +L SKE AM+ YI+
Sbjct: 24 MLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYIN 75
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 10 FYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTK 69
F VS I LP++ I P L Y YKQ+T G N +P+ + + K++AW
Sbjct: 6 FEECVSFINGLPRT--INLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKS 63
Query: 70 LGDMSKEAAMQRYID 84
+ ++++E A +RY+D
Sbjct: 64 VENLNREDAQKRYVD 78
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 35 QFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTKLGDMSKEAAMQRYIDEFINIVD 91
+ Y LYKQA G N P D+ K KW+AW +S E A YI + +++
Sbjct: 29 ELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKELIE 85
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 85 EFINIVDSTLGSDVEDMVKSL--------GTLYEAVNNEDIDLLLGPTMDKLFARTGSKK 136
+F + ++T SD+E+ K L +++A+ N+ +DL+L + R+ +K
Sbjct: 131 DFADEANATTESDIEETFKKLVLKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQK 190
Query: 137 LAQLKDKV--LKSRDI--DDLSRTDTSIHDLSRTENKLSEYYAAAPANGDIMREDLTHAY 192
++++ + L ++DI DD D ++H + + E P D MR +++ +
Sbjct: 191 HGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFH 250
Query: 193 QLRNADKGMNGGLRGMD 209
+ KG+ LR +D
Sbjct: 251 E--TIWKGVPKFLRRVD 265
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
Length = 970
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 90 VDSTLGSDVEDMVKSLGTLYEAVNNEDIDLLLGPTMDKLFARTGSKKLAQLKDKV--LKS 147
++ TL V ++ KS ++EA+ N+ +DL+ + R+ +K A++++ + L +
Sbjct: 143 IEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNA 202
Query: 148 RDI--DDLSRTDTSIHDLSRTENKLSEYYAAAPANGDIMREDLTHAYQLRNADKGMNGGL 205
+DI DD D ++ + + E A P MR +++ ++ KG+ L
Sbjct: 203 KDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHE--TVWKGVPKFL 260
Query: 206 RGMD 209
R +D
Sbjct: 261 RRVD 264
>pdb|1T0T|V Chain V, Crystallographic Structure Of A Putative Chlorite
Dismutase
pdb|1T0T|W Chain W, Crystallographic Structure Of A Putative Chlorite
Dismutase
pdb|1T0T|X Chain X, Crystallographic Structure Of A Putative Chlorite
Dismutase
pdb|1T0T|Y Chain Y, Crystallographic Structure Of A Putative Chlorite
Dismutase
pdb|1T0T|Z Chain Z, Crystallographic Structure Of A Putative Chlorite
Dismutase
Length = 248
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 59 VRKTKWDAWTKLGDMSKEAAMQRYIDEFINIVDSTLGSDVEDMVKSLGTLYEAVNNED-- 116
R W AW L + +EAA I EF+ +VD ++ E + +Y V +
Sbjct: 17 FRTIDWSAWKTLPNEEREAA----ISEFLALVDQWETTESEK--QGSHAVYTIVGQKADI 70
Query: 117 IDLLLGPTMDKLFARTGSKKLAQLKDKVL 145
+ ++L PT+D+L + +L D +L
Sbjct: 71 LFMILRPTLDELHEIETALNKTKLADYLL 99
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 138 AQLKDKVLKSRDIDDLSRTDTSIHDLSRTENKLSEYYAAAPANGDIMREDL 188
A + + L + ++ R S H +S +SE+ P GDI RE L
Sbjct: 67 ALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREAL 117
>pdb|2K7R|A Chain A, N-Terminal Domain Of The Bacillus Subtilis
Helicase-Loading Protein Dnai
Length = 106
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 135 KKLAQLKDKVLKSRDIDDLSRTDTSIHD---LSRTENKLSEY 173
K+L Q+K+KV+K +D+ + + + D + ++ NKL EY
Sbjct: 19 KRLEQMKEKVMKDQDVQAFLKENEEVIDQKMIEKSLNKLYEY 60
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 101 MVKSLGTLYEAVNNEDIDLLLGPTMDKLFARTGSKKLAQ 139
MVKS +YE NN ID+ L M G +K+A+
Sbjct: 383 MVKSFNNIYEMANNRRIDMRLAAYM------VGVRKMAE 415
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,860,427
Number of Sequences: 62578
Number of extensions: 333895
Number of successful extensions: 571
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 26
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)