RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15968
(250 letters)
>gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein.
Length = 87
Score = 111 bits (280), Expect = 9e-32
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 7 ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
E +F AAV ++ LPK G + L+ YALYKQATEG N P+P +D++ K KWDA
Sbjct: 2 EEEFEAAVKFVKKLPKDG--RPSNEEKLKLYALYKQATEGDVNTPRPGMFDVIGKAKWDA 59
Query: 67 WTKLGDMSKEAAMQRYIDEFINIVDS 92
W KL MSKE AM++Y++ +V+
Sbjct: 60 WKKLKGMSKEEAMKKYVELVEELVEK 85
>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters
of long fatty acids and coenzyme A in a one-to-one
binding mode with high specificity and affinity.
Acyl-CoAs are important intermediates in fatty lipid
synthesis and fatty acid degradation and play a role in
regulation of intermediary metabolism and gene
regulation. The suggested role of ACBP is to act as a
intracellular acyl-CoA transporter and pool former.
ACBPs are present in a large group of eukaryotic
species and several tissue-specific isoforms have been
detected.
Length = 85
Score = 99.7 bits (249), Expect = 4e-27
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 9 KFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWT 68
+F AA ++ L + LQ Y+LYKQAT G N +P +D+ + KWDAW
Sbjct: 4 EFEAAAEKVKKLK----TKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWN 59
Query: 69 KLGDMSKEAAMQRYIDE 85
L MSKE AM+ YI +
Sbjct: 60 SLKGMSKEDAMKAYIAK 76
>gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism].
Length = 87
Score = 63.7 bits (155), Expect = 2e-13
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 31 NTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTKLGDMSKEAAMQRYID 84
+ +L+ YAL+KQ + G N+ KP F+DIV + K++AW L S+E A Q YI
Sbjct: 23 DELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIA 76
>gnl|CDD|185637 PTZ00458, PTZ00458, acyl CoA binding protein; Provisional.
Length = 90
Score = 57.1 bits (138), Expect = 6e-11
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 10 FYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTK 69
F VS I +LPK+ + + L Y YKQ+T G N +P+ + + K++AW
Sbjct: 5 FEECVSFINSLPKTVNL--SVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKS 62
Query: 70 LGDMSKEAAMQRYID 84
+ ++++E A +RY++
Sbjct: 63 IENLNREDAKKRYVE 77
>gnl|CDD|220315 pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) is a widespread family of prokaryotic direct
repeats with spacers of unique sequence between
consecutive repeats. This entry, typified by YPO2464 of
Yersinia pestis, is a CRISPR-associated (Cas) entry
strictly associated with the Ypest subtype of CRISPR/Cas
locus. It is designated Csy2, for CRISPR/Cas Subtype
Ypest protein 2.
Length = 295
Score = 30.4 bits (69), Expect = 0.77
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 15 SIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAW 67
+Q L + P T L+ L F AL Q ++ W+ VRK K + W
Sbjct: 175 EALQRLQDANPEATLLDAWLDFAALNHQPLRDEFDESPE--WEYVRKPKGNGW 225
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 30.4 bits (69), Expect = 0.86
Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 25/104 (24%)
Query: 71 GDMSKEAAMQRYIDEFINIVDSTLG---------SDVEDMVKSLGTLYEAVNNEDIDLLL 121
++ ++ + E +++D L S+++D ++ + + +E +
Sbjct: 344 TELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKV-- 401
Query: 122 GPTMDKLFARTGSKKLAQLKDKVLKSRDIDDLSRTDTSIHDLSR 165
+ L L+ L++R ++L R + +H++ R
Sbjct: 402 ------------QEHLTSLRKDELEAR--ENLERLKSKLHEIKR 431
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 28.6 bits (64), Expect = 3.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 18 QNLPKSGPIQTPLNTMLQFYALYKQAT 44
+L P Q P+N M Q YAL+ T
Sbjct: 81 VDLSHVPPYQRPINMMFQSYALFPHMT 107
>gnl|CDD|132079 TIGR03034, TIGR03034, conserved hypothetical protein. Members of
this protein family have been found in several species
of gammaproteobacteria, including Yersinia pestis and Y.
pseudotuberculosis, Xylella fastidiosa, and Escherichia
coli UTI89. As many as five members can be found in a
single genome. The function is unknown [Hypothetical
proteins, Conserved].
Length = 274
Score = 27.9 bits (62), Expect = 4.5
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 165 RTENKLSEYYAAAPANGDIMREDLTHAYQLRN 196
+T +++ +Y A GD+ + L + L +
Sbjct: 10 KTISRMDDYSADDMKCGDLTEQQLKSDFGLSD 41
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 28.0 bits (62), Expect = 5.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 5 ERERKFYAAVSIIQNLPK 22
+R+RK Y AV I++N+PK
Sbjct: 150 DRKRKEYCAVKIVRNVPK 167
>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family. NmrA is a negative
transcriptional regulator involved in the
post-translational modification of the transcription
factor AreA. NmrA is part of a system controlling
nitrogen metabolite repression in fungi. This family
only contains a few sequences as iteration results in
significant matches to other Rossmann fold families.
Length = 232
Score = 27.6 bits (62), Expect = 5.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Query: 68 TKLGDMSKEAAMQRYI-DEFINIVDSTLGSD-----------VEDMVKSLG 106
KL D +KEA ++ +I EF N VD + G + VE +++LG
Sbjct: 84 KKLADAAKEAGVKHFIPSEFGNDVDRSNGVEPAVPHFDSKAEVERYIRALG 134
>gnl|CDD|220710 pfam10351, Apt1, Golgi-body localisation protein domain. This is
the C-terminus of a family of proteins conserved from
plants to humans. The plant members are localised to the
Golgi proteins and appear to regulate membrane
trafficking, as they are required for rapid vesicle
accumulation at the tip of the pollen tube. The
C-terminus probably contains the Golgi localisation
signal and it is well-conserved.
Length = 451
Score = 27.6 bits (62), Expect = 6.3
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 109 YEAVNNEDIDLLLGPTMDKLFARTGSKKLAQLKDKVLKSRDIDDLSRTDTSIHDLSR 165
Y A+ + DLLL + K + +K+L S D DL D+ + L
Sbjct: 55 YAALYDIVTDLLL-------YVEPKEKSRKERLEKLLFSSDFSDLEGLDSRVVALQE 104
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,657,112
Number of extensions: 1174887
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 21
Length of query: 250
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 155
Effective length of database: 6,723,972
Effective search space: 1042215660
Effective search space used: 1042215660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)