RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15968
(250 letters)
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid
metabolism, lipid binding protein; HET: MES; 1.61A
{Moniliophthora perniciosa}
Length = 106
Score = 109 bits (274), Expect = 6e-31
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 7 ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
+ KF AV I+Q+LPK GPI+ + L FY +KQAT G N +P D K KWDA
Sbjct: 5 KAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDA 64
Query: 67 WTKLGDMSKEAAMQRYIDEFINIVDSTLGSDVEDMVKSL 105
W + SKE A Q+Y+++ + I+ + + + +
Sbjct: 65 WKSVEGTSKEVAYQKYVEKLLEILKKADTEESKKYIAEI 103
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative
splicing, fatty acid metabolism, lipid transport, lipid
binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Length = 106
Score = 108 bits (270), Expect = 2e-30
Identities = 43/90 (47%), Positives = 57/90 (63%)
Query: 1 MKMKERERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVR 60
+ +++F AAVS+IQNLPK+G + ML+FY+ YKQAT GP P+P FWD +
Sbjct: 3 SPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIG 62
Query: 61 KTKWDAWTKLGDMSKEAAMQRYIDEFINIV 90
+ KWDAW LG MS+E AM YI E +
Sbjct: 63 RYKWDAWNSLGKMSREEAMSAYITEMKLVA 92
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding,
structural genomics, struct genomics consortium, SGC,
lipid-binding, membrane; HET: STE COA; 1.70A {Homo
sapiens}
Length = 119
Score = 105 bits (263), Expect = 4e-29
Identities = 44/90 (48%), Positives = 60/90 (66%)
Query: 3 MKERERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKT 62
E +F AAV +IQ+LPK+G Q ML+FY+ YKQATEGP +P FWD + +
Sbjct: 21 QSMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRY 80
Query: 63 KWDAWTKLGDMSKEAAMQRYIDEFINIVDS 92
KWDAW+ LGDM+KE AM Y++E I+++
Sbjct: 81 KWDAWSSLGDMTKEEAMIAYVEEMKKIIET 110
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty
acid, acetylation, alternative splicing, lipid-binding,
transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A
1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Length = 87
Score = 99.5 bits (248), Expect = 3e-27
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 7 ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
+ +F A +++L + ML Y YKQAT G N +P D K KWDA
Sbjct: 3 QAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDA 58
Query: 67 WTKLGDMSKEAAMQRYID 84
W +L SKE AM+ YI+
Sbjct: 59 WNELKGTSKEDAMKAYIN 76
>2lbb_A Acyl COA binding protein; protein binding, structural genomi
seattle structural genomics center for infectious
disease,; NMR {Babesia bovis}
Length = 96
Score = 99.6 bits (248), Expect = 3e-27
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 7 ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
F AAV + N + L FY YKQAT G N+PKP + K KW+A
Sbjct: 11 ADDFDAAVKYVSNTTTMMA---SNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEA 67
Query: 67 WTKLGDMSKEAAMQRYID 84
W L MS E+A + Y+
Sbjct: 68 WNALRGMSTESAKEAYVK 85
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA
MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Length = 89
Score = 99.2 bits (247), Expect = 4e-27
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 7 ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
+ F VS I LP++ P L Y YKQ+T G N +P+ + + K++A
Sbjct: 3 AQVFEECVSFINGLPRTI--NLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60
Query: 67 WTKLGDMSKEAAMQRYID 84
W + ++++E A +RY+D
Sbjct: 61 WKSVENLNREDAQKRYVD 78
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 116
Score = 99.7 bits (248), Expect = 7e-27
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 1 MKMKERERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVR 60
M+ ++ F +++ ++ L K L+ YALYKQATEGP N PKP +D++
Sbjct: 11 TAMRASQKDFENSMNQVKLLKK----DPGNEVKLKLYALYKQATEGPCNMPKPGVFDLIN 66
Query: 61 KTKWDAWTKLGDMSKEAAMQRYID 84
K KWDAW LG + KEAA Q Y+D
Sbjct: 67 KAKWDAWNALGSLPKEAARQNYVD 90
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport
protein; NMR {Saccharomyces cerevisiae}
Length = 86
Score = 96.9 bits (241), Expect = 3e-26
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 7 ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
+ F + LP + + +L+ YALYKQAT G N++ KP +++ + KW+A
Sbjct: 2 SQLFEEKAKAVNELPT----KPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEA 57
Query: 67 WTKLGDMSKEAAMQRYID 84
W L S+E A + YI
Sbjct: 58 WENLKGKSQEDAEKEYIA 75
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding
protein, fatty acid, lipid metabolism, structural
genomics; HET: COA PLM; 2.00A {Homo sapiens}
Length = 89
Score = 95.3 bits (237), Expect = 1e-25
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 7 ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
+ F A ++ L + + + Y LYKQA G N P D+ K KW+A
Sbjct: 5 QADFDRAAEDVRKLKA----RPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEA 60
Query: 67 WTKLGDMSKEAAMQRYID 84
W +S E A YI
Sbjct: 61 WNLKKGLSTEDATSAYIS 78
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding
protein, COA binding protein, lipid binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 109
Score = 89.7 bits (222), Expect = 3e-23
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 1 MKMKERERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVR 60
F A + +Q L + +L YA YKQ G N PKP+F+D
Sbjct: 3 SGSSGLAELFEKAAAHLQGLIQ----VASREQLLYLYARYKQVKVGNCNTPKPSFFDFEG 58
Query: 61 KTKWDAWTKLGDMSKEAAMQRYID 84
K KW+AW LGD S AMQ YI
Sbjct: 59 KQKWEAWKALGDSSPSQAMQEYIA 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 6e-05
Identities = 26/219 (11%), Positives = 63/219 (28%), Gaps = 54/219 (24%)
Query: 4 KERERKFYAAVSI-IQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKT 62
E + + Q+LP+ P + + +G
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIR---DGLA-------------- 342
Query: 63 KWDAWTKLGDMSKEAAMQRYIDEFINIVDST--------LG---SDVEDMVKSLGTLYEA 111
WD W + + I+ +N+++ L L ++
Sbjct: 343 TWDNWKHVNCD----KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 112 VNNEDIDLLLGPTMDKLFARTGSKKLAQLKDKVLKSRDIDDLSRTDTSIHDLSRTE--NK 169
V D+ ++ ++KL L + K + I + + + +
Sbjct: 399 VIKSDVMVV----VNKLH----KYSLVE-KQPKESTISIPSIYL-ELKVKLENEYALHRS 448
Query: 170 LSEYYAAAPA--NGDIM--RED---LTH-AYQLRNADKG 200
+ ++Y + D++ D +H + L+N +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Score = 27.9 bits (61), Expect = 4.4
Identities = 19/134 (14%), Positives = 35/134 (26%), Gaps = 57/134 (42%)
Query: 79 MQRYIDEFINIVDSTLGSDVEDMVKSLGTLYEAVNNEDIDLLLGPTMDKLFARTGSKKLA 138
+ + D F++ D DV+DM KS
Sbjct: 22 LSVFEDAFVDNFDC---KDVQDMPKS---------------------------------- 44
Query: 139 QLKDKVLKSRDIDDLSRTDTSIHDLSRT-------ENKLSEYYAAAPANGDIMRED---L 188
+L +ID + + +S T +K E +++R + L
Sbjct: 45 -----ILSKEEIDHIIMSK---DAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKFL 94
Query: 189 THAYQLRNADKGMN 202
+ M
Sbjct: 95 MSPIKTEQRQPSMM 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.033
Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 59/256 (23%)
Query: 15 SIIQNLPKS--GPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDAWTKL-- 70
++ L + + + + A + + A + V + +L
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN----AQLVA 158
Query: 71 -----GDMSKEAAMQRYIDEFINIVDSTLGSDVEDMVKSLG-TLYEAVNNEDIDLLLGPT 124
G+ Y +E ++ T V D++K TL E +
Sbjct: 159 IFGGQGNT------DDYFEELRDLYQ-TYHVLVGDLIKFSAETLSELIRTT-------LD 204
Query: 125 MDKLFARTGSKKLAQLKDKVLKSRDIDDLSRTDTSIHDLSRTENKLSEYYAAAPANG--- 181
+K+F + G L L++ + D D L S + + L+ Y A G
Sbjct: 205 AEKVFTQ-GLNILEWLENPS-NTPDKDYLLSIPISCPLIGVIQ--LAHYVVTAKLLGFTP 260
Query: 182 ----DIMREDLTHAYQL----------------RNADKGMNG----GLRGMDEHGGITTW 217
++ H+ L + K + G+R + + +
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 218 SQCVQNAEPGSHQLPS 233
++++ + +PS
Sbjct: 321 PSILEDSLENNEGVPS 336
>1t0t_V APC35880; pentamer, icosahedral, structural genomics, protein
structure initiative, MCSG, PSI; HET: P33; 1.75A
{Geobacillus stearothermophilus} SCOP: d.58.4.10
Length = 248
Score = 31.1 bits (70), Expect = 0.27
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 60 RKTKWDAWTKLGDMSKEAAMQRYIDEFINIVDSTLGSDVEDMVKSLGTLYEAVNNE-DID 118
R W AW L + +EAA I EF+ +VD ++ E +Y V + DI
Sbjct: 18 RTIDWSAWKTLPNEEREAA----ISEFLALVDQWETTESEKQGSH--AVYTIVGQKADIL 71
Query: 119 L-LLGPTMDKL 128
+L PT+D+L
Sbjct: 72 FMILRPTLDEL 82
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed
liganded, ABC-transporter, compatible solutes, transport
protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Length = 268
Score = 31.0 bits (70), Expect = 0.31
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 63 KWDAWTKLGDMSKEAAMQRYIDEFINIVDST---------LGSDVEDMVKSLGTLYEAVN 113
+ WTK K + + + + ST LG +V G ++ A+
Sbjct: 151 QIAEWTKGVQKVKGDKINLAYVAWDSEIASTNVIGKVLEDLGYEVTLTQVEAGPMWTAIA 210
Query: 114 NEDIDLLLG---PTMDKLFARTGSKKLAQL 140
D L P K +A K +
Sbjct: 211 TGSADASLSAWLPNTHKAYAAKYKGKYDDI 240
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma,
lipid binding protein; 1.7A {Homo sapiens} SCOP:
a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Length = 165
Score = 30.1 bits (67), Expect = 0.46
Identities = 13/111 (11%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 41 KQATEGPNNQPKPAFWDIVRKTKWDAWTKLGDMSKEAAMQRYIDEFINIVDSTLGSDVED 100
+ + Q W++ WD + +S++ + + + + + +++
Sbjct: 12 PELRQQTEWQSGQR-WELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKE 70
Query: 101 MVKSLGTLYEAVNN--EDIDLLLGPTMDKLFARTGSKKLAQLKDKVLKSRD 149
+ L E + E+ L + AR G + ++ ++++ R
Sbjct: 71 LKAYKSELEEQLTPVAEETRARLSKELQAAQARLG-ADMEDVRGRLVQYRG 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.50
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 15/37 (40%)
Query: 18 QNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPA 54
Q L K L L+ YA ++ P A
Sbjct: 20 QALKK-------LQASLKLYA--------DDSAPALA 41
>3tmg_A Glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein...; ssgcid,
structural genomics; 1.90A {Borrelia burgdorferi}
Length = 280
Score = 28.2 bits (63), Expect = 2.6
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 21/115 (18%)
Query: 94 LGSDVEDMVKSLGTLYEAVNNEDIDLLLG---PTMDKLFARTGSKKLAQLKDKVLKSRDI 150
+G + E + +Y+ + + ID + PT DK + +LK K +
Sbjct: 42 MGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVPTADKFYY-------EKLKTKFVDLGAN 94
Query: 151 DDLSRTD---------TSIHDLSRTENKLSEYYAAAPANGDIMR--EDLTHAYQL 194
+ + +SI +L +K A E + Y L
Sbjct: 95 YEGTIQGFVVPSYVPISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALNYYGL 149
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP,
A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus}
PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A*
1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A*
1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A*
...
Length = 267
Score = 27.5 bits (62), Expect = 3.4
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 183 IMRE------DLTHAYQLRNADKGMNGGLRGM 208
IM++ D TH+ QL +GG+R
Sbjct: 172 IMKQWAKVIYDATHSVQLPGGLGDKSGGMREF 203
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Length = 288
Score = 27.1 bits (61), Expect = 4.6
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 183 IMRE-------DLTHAYQLRNADKGMNGGLRGM 208
IMRE D TH+ QL +GG R
Sbjct: 191 IMRETNAPVVFDATHSVQLPGGQGTSSGGQREF 223
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla
melitensis, DAHP synthetase I, cytoplasm,
lipopolysaccharide biosynthesis; HET: PG4; 1.85A
{Brucella melitensis}
Length = 298
Score = 27.2 bits (61), Expect = 5.2
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 183 IMRE-------DLTHAYQLRNADKGMNGGLRGM 208
IM D TH+ Q G GG R
Sbjct: 209 IMAGLGAPVIFDATHSVQQPGGQGGSTGGQREF 241
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 26.1 bits (57), Expect = 6.1
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 13/63 (20%)
Query: 98 VEDMVKSLGTLYEAVNNEDIDLLLGPTMDKLFARTGSKKLAQLKDKVLKSRDIDDLSRTD 157
+D+ + L L E L P ++ L Q L D
Sbjct: 38 CDDISRRLALLREQWAGGK---LSIPVKKRM------ALLVQE----LLHHQWDAADDIH 84
Query: 158 TSI 160
S+
Sbjct: 85 RSL 87
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 26.7 bits (59), Expect = 6.2
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 14/76 (18%)
Query: 23 SGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDI---------VRKTKW-----DAWT 68
+G + +F Q GP+N+ K + K K A
Sbjct: 42 NGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHK 101
Query: 69 KLGDMSKEAAMQRYID 84
G MS+ A RY+
Sbjct: 102 NCGQMSEIEAKVRYVK 117
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus
stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A*
3msd_A* 3msg_A* 3mui_A* 3ms8_A
Length = 331
Score = 26.7 bits (59), Expect = 7.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 48 NNQPKPAFWDIV 59
++PKPAFW V
Sbjct: 318 QHKPKPAFWRAV 329
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine
betaine binding, substrate binding domain, venus FLY
cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB:
3l6h_A
Length = 256
Score = 26.7 bits (59), Expect = 7.4
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 94 LGSDVEDMVKSLGTLYEAVNNEDIDLLLG---PTMDKLFARTGSKKLAQL 140
G DV+ ++ V N D ++ P K + K + L
Sbjct: 28 HGFDVKTTALDNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLL 77
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A*
3und_A*
Length = 285
Score = 26.8 bits (60), Expect = 7.8
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 9/35 (25%)
Query: 183 IMRE---------DLTHAYQLRNADKGMNGGLRGM 208
M E D+TH+ Q R+ +GG R
Sbjct: 188 QMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQ 222
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics,
transferase; 1.80A {Haemophilus influenzae} SCOP:
c.1.10.4 PDB: 3e9a_A
Length = 292
Score = 26.8 bits (60), Expect = 7.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 183 IMRE---------DLTHAYQLRNADKGMNGGLRGM 208
+M++ D+TH+ Q R+ + G R
Sbjct: 186 VMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQ 220
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.1 bits (60), Expect = 8.0
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 113 NNEDIDLLLGPTMDKLFARTGSKKLAQLKDKV 144
+ E D ++ + + F G++ ++ D
Sbjct: 2057 DGEFFDPIISRLISREFNHAGNRVTVEIGDHE 2088
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;
manno-octulosonate, synthase, lipopolysaccharide, KDOP,
KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B}
PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A
3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A*
1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Length = 280
Score = 26.4 bits (59), Expect = 9.0
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 183 IMRE---------DLTHAYQLRNADKGMNGGLRGM 208
+M++ D+TH+ Q R+A +GG R
Sbjct: 183 VMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQ 217
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 26.7 bits (59), Expect = 9.3
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 105 LGTLYEAVNNEDIDLLLGPTMDKLFARTGSKKLAQLKDKVLK 146
L + D ++G + K R K + +++
Sbjct: 423 LWHFRSLMFTRQPDFMIGNSYGKFIQRDTLAKGKAFEVPLIR 464
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 26.7 bits (59), Expect = 9.3
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 10/56 (17%)
Query: 76 EAAMQRYIDEFINIVDSTLGSDVEDMVKSLGTLYEAVNNEDIDLLLGPTMDKLFAR 131
+A ++ + + + ++D + V D+L+ + A
Sbjct: 371 KARIRELMGDDVKMLDEGNARVLLKTVD----------EYQADILIAGGRNMYTAL 416
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,795,118
Number of extensions: 220380
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 40
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.6 bits)