RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15968
         (250 letters)



>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
          falciparum [TaxId: 5833]}
          Length = 89

 Score =  102 bits (256), Expect = 7e-29
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 7  ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
           + F   VS I  LP++  +  P    L  Y  YKQ+T G  N  +P+    + + K++A
Sbjct: 3  AQVFEECVSFINGLPRTINL--PNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60

Query: 67 WTKLGDMSKEAAMQRYID 84
          W  + ++++E A +RY+D
Sbjct: 61 WKSVENLNREDAQKRYVD 78


>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 86

 Score = 94.9 bits (236), Expect = 7e-26
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 7  ERKFYAAVSIIQNLPKSGPIQTPLNTMLQFYALYKQATEGPNNQPKPAFWDIVRKTKWDA 66
          + +F  A   +++L      +     ML  Y+ YKQAT G  N  +P   D   K KWDA
Sbjct: 2  QAEFDKAAEEVKHLKT----KPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDA 57

Query: 67 WTKLGDMSKEAAMQRYID 84
          W +L   SKE AM+ YID
Sbjct: 58 WNELKGTSKEDAMKAYID 75


>d1vdha_ d.58.4.10 (A:) Polyketide synthase CurD homologue
           TTHA1714/TTC1352 {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 29.0 bits (65), Expect = 0.46
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 59  VRKTKWDAWTKLGDMSKEAAMQRYIDEFINIVDSTLGSDVEDMVKSLGTLYEAVNNE-DI 117
            R   +  W      ++E A     +E   +V      +          +Y+ V ++ D+
Sbjct: 19  FRLLDFARWFSAPLEAREDA----WEELKGLVREWRELEEAGQGSY--GIYQVVGHKADL 72

Query: 118 DL-LLGPTMDKL 128
               L P +D L
Sbjct: 73  LFLNLRPGLDPL 84


>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor
           (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId:
           9606]}
          Length = 249

 Score = 26.1 bits (57), Expect = 4.5
 Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 3/106 (2%)

Query: 80  QRYIDEFINIVDSTLGSDVEDMVKSLGTLYEAVNNEDIDLLLGPTMDKLFARTGSKK--L 137
            +    F+  +       +E+  +     Y  V          P           +K  +
Sbjct: 19  YKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIM 78

Query: 138 AQLKDKVLKSRDIDDLSRTDTSIHDLSRTENKLSEYYAAAPANGDI 183
            +L   V      DD  + D +I    R    ++      P N DI
Sbjct: 79  TRLYKYVFCPETTDDEKK-DLAIQKRIRALRWVTPQMLCVPVNEDI 123


>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6
           [TaxId: 1422]}
          Length = 330

 Score = 25.6 bits (55), Expect = 6.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 48  NNQPKPAFWDIV 59
            ++PKPAFW  V
Sbjct: 317 QHKPKPAFWRAV 328


>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6
           [TaxId: 1422]}
          Length = 371

 Score = 25.2 bits (54), Expect = 9.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 48  NNQPKPAFWDIV 59
           + + KPA+W I+
Sbjct: 357 DYKVKPAYWAII 368


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 908,109
Number of extensions: 40605
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 11
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.2 bits)