BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15969
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D5V|A Chain A, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
pdb|2D5V|B Chain B, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
Length = 164
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 59/66 (89%)
Query: 35 DISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMN 94
+ +D+ +TPKKPRLVFTD+QRRTL AIFKE KRPSKE+Q+TI++QLGLE +TV NFFMN
Sbjct: 88 EHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMN 147
Query: 95 ARRRSM 100
ARRRS+
Sbjct: 148 ARRRSL 153
>pdb|1S7E|A Chain A, Solution Structure Of Hnf-6
Length = 147
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 55/62 (88%)
Query: 35 DISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMN 94
+ +D+ +TPKKPRLVFTD+QRRTL AIFKE KRPSKE+Q+TI++QLGLE +TV NFFMN
Sbjct: 86 EHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMN 145
Query: 95 AR 96
AR
Sbjct: 146 AR 147
>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Goosecoid
Length = 70
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
S+ ++ R +FTD Q L+ +F+ETK P + +AR++ L V +F N R
Sbjct: 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 59
>pdb|2DJN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Dlx-5
Length = 70
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 42 STPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
S+ +KPR +++ Q LQ F++T+ + + +A LGL T V +F N R +
Sbjct: 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61
>pdb|1OCP|A Chain A, Solution Structure Of Oct3 Pou-Homeodomain
Length = 67
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
K+ R + R +L+ +F + +PS + IA QLGLE V +F N R++
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKG 63
>pdb|2DA1|A Chain A, Solution Structure Of The First Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 70
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMN 94
S+ K+PR TD Q R L+ F PS+E +A + GL + ++F N
Sbjct: 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRN 57
>pdb|3L1P|A Chain A, Pou Protein:dna Complex
pdb|3L1P|B Chain B, Pou Protein:dna Complex
Length = 155
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
K+ R + R +L+ +F ++ +PS + IA QLGLE V +F N R++
Sbjct: 97 KRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKG 151
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human
Homeobox Protein Meis2
pdb|3K2A|B Chain B, Crystal Structure Of The Homeobox Domain Of Human
Homeobox Protein Meis2
Length = 67
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 69 PSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
PS+E + +A+ GL V N+F+NARRR
Sbjct: 26 PSEEQKKQLAQDTGLTILQVNNWFINARRR 55
>pdb|2DMT|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Barh-Like 1
Length = 80
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
++ R VFT+LQ L+ F++ K S ++ +A LGL V ++ N R
Sbjct: 18 RRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 69
>pdb|2DMS|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Otx2
Length = 80
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
S+ ++ R FT Q L+A+F +T+ P M+ +A ++ L + V +F N R
Sbjct: 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRR 59
>pdb|3A01|A Chain A, Crystal Structure Of Aristaless And Clawless
Homeodomains Bo
pdb|3A01|E Chain E, Crystal Structure Of Aristaless And Clawless
Homeodomains Bo
Length = 93
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 40 QSSTP---KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
Q+ TP KKPR FT +Q L+ F + K + + +AR L + V +F N R
Sbjct: 10 QNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRR 69
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 51 FTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
F + R L+ + PS + +A GL T V N+F N R+R
Sbjct: 501 FKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 548
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of
Human Homeobox Protein Tgif1, Northeast Structural
Genomics Consortium Target Hr4411b
Length = 89
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 69 PSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
PS++ + +++Q L V N+F+NARRR
Sbjct: 33 PSEQEKALLSQQTHLSTLQVCNWFINARRR 62
>pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOS|B Chain B, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOT|A Chain A, Phage Selected Homeodomain Bound To Modified Dna
pdb|2HOT|B Chain B, Phage Selected Homeodomain Bound To Modified Dna
Length = 63
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
S K+PR F+ Q L+ F E + ++ + ++ +LGL V +F N R
Sbjct: 1 GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMR 56
>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant
R31lE42L
Length = 67
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
++PR FT Q L+ +F+ P ++ +A++L LE + +F N R
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRR 53
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 69 PSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
PS+E + +AR+ G+ + V N+F N R R
Sbjct: 29 PSEEAKEELARKCGITVSQVSNWFGNKRIR 58
>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
Length = 59
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
K+PR F+ Q L+ F E + ++ + ++ +LGL + +F NAR
Sbjct: 2 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNAR 53
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
R L+ +F+ + + + + +A++ G+ P V +F+N R RS
Sbjct: 377 RAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 420
>pdb|1BW5|A Chain A, The Nmr Solution Structure Of The Homeodomain Of The Rat
Insulin Gene Enhancer Protein Isl-1, 50 Structures
Length = 66
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
R V + Q TL+ + RP M+ + GL P + +F N R
Sbjct: 7 RTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKR 55
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Pknox1
Length = 73
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 69 PSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
P+++ + IA Q L V N+F+NARRR
Sbjct: 35 PTEDEKKQIAAQTNLTLLQVNNWFINARRR 64
>pdb|1FTT|A Chain A, Thyroid Transcription Factor 1 Homeodomain (Rattus
Norvegicus)
Length = 68
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
+K R++F+ Q L+ FK+ K S + +A + L PT V +F N R
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHR 54
>pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
Protein Lhx9
Length = 80
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
S+ K+ R F Q RT+++ F P + +A++ GL + +F NAR
Sbjct: 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNAR 59
>pdb|3RKQ|A Chain A, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
pdb|3RKQ|B Chain B, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
Length = 58
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
+KPR++F+ Q L+ FK+ + S + +A L L T V +F N R +S
Sbjct: 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Tgif2lx
Length = 83
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 69 PSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
PS+E + ++ + L + N+F+NARRR
Sbjct: 35 PSEEEKQMLSEKTNLSLLQISNWFINARRR 64
>pdb|1AU7|A Chain A, Pit-1 MutantDNA COMPLEX
pdb|1AU7|B Chain B, Pit-1 MutantDNA COMPLEX
Length = 146
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
+K R + + L+ F E +PS + + +A +L LE V +F N R+R
Sbjct: 87 KRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQR 141
>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna
Complex At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna
Complex At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
Length = 61
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
K+PR F+ Q L+ F E + ++ + ++ +LGL + +F N R
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 55
>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52e
Length = 59
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
K+PR F+ Q L+ F E + ++ + ++ +LGL + +F N R
Sbjct: 1 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNER 53
>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex
pdb|3HDD|B Chain B, Engrailed Homeodomain Dna Complex
Length = 60
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
K+PR F+ Q L+ F E + ++ + ++ +LGL + +F N R
Sbjct: 2 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 53
>pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex
pdb|2HDD|B Chain B, Engrailed Homeodomain Q50k Variant Dna Complex
Length = 61
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 43 TPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
K+PR F+ Q L+ F E + ++ + ++ +LGL + +F N R
Sbjct: 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKR 55
>pdb|1LLI|A Chain A, The Crystal Structure Of A Mutant Protein With Altered
But Improved Hydrophobic Core Packing
pdb|1LLI|B Chain B, The Crystal Structure Of A Mutant Protein With Altered
But Improved Hydrophobic Core Packing
Length = 92
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 42 STPKKPRLVFTDLQ-RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFF 92
ST KKP L L+ R L+AI+++ K Q ++A +LG+ + +G F
Sbjct: 1 STKKKP-LTQEQLEDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALF 51
>pdb|1LE8|A Chain A, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 53
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
R L+ +F+ + + + + +A++ G+ P V +F+N R RS
Sbjct: 9 RAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 52
>pdb|1AKH|A Chain A, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 61
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
R L+ +F+ + + + + +A++ G+ P V +F+N R RS
Sbjct: 17 RAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,601,191
Number of Sequences: 62578
Number of extensions: 40954
Number of successful extensions: 115
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 42
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)