BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15969
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NJB5|ONEC_DROME Homeobox protein onecut OS=Drosophila melanogaster GN=onecut PE=2
SV=2
Length = 1081
Score = 140 bits (353), Expect = 2e-33, Method: Composition-based stats.
Identities = 71/81 (87%), Positives = 75/81 (92%), Gaps = 2/81 (2%)
Query: 27 TCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPT 86
+C+RKEEP I +Q PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPT
Sbjct: 905 SCRRKEEPQI--EQMPQPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPT 962
Query: 87 TVGNFFMNARRRSMDKWKDDD 107
TVGNFFMNARRRSMDKW+DDD
Sbjct: 963 TVGNFFMNARRRSMDKWRDDD 983
>sp|O08755|HNF6_MOUSE Hepatocyte nuclear factor 6 OS=Mus musculus GN=Onecut1 PE=1 SV=1
Length = 465
Score = 116 bits (290), Expect = 5e-26, Method: Composition-based stats.
Identities = 60/104 (57%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 3 EKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAI 62
E R+ K ++ + ++ + CKRKE+ + +D+ +TPKKPRLVFTD+QRRTL AI
Sbjct: 345 ETFRRMWKWLQEPEFQRMSALRLAACKRKEQ-EHGKDRGNTPKKPRLVFTDVQRRTLHAI 403
Query: 63 FKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106
FKE KRPSKE+Q+TI++QLGLE +TV NFFMNARRRS+DKW+D+
Sbjct: 404 FKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWQDE 447
>sp|P70512|HNF6_RAT Hepatocyte nuclear factor 6 OS=Rattus norvegicus GN=Onecut1 PE=1
SV=1
Length = 465
Score = 115 bits (289), Expect = 6e-26, Method: Composition-based stats.
Identities = 60/104 (57%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 3 EKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAI 62
E R+ K ++ + ++ + CKRKE+ + +D+ +TPKKPRLVFTD+QRRTL AI
Sbjct: 345 ETFRRMWKWLQEPEFQRMSALRLAACKRKEQ-EHGKDRGNTPKKPRLVFTDVQRRTLHAI 403
Query: 63 FKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106
FKE KRPSKE+Q+TI++QLGLE +TV NFFMNARRRS+DKW+D+
Sbjct: 404 FKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWQDE 447
>sp|Q9UBC0|HNF6_HUMAN Hepatocyte nuclear factor 6 OS=Homo sapiens GN=ONECUT1 PE=2 SV=1
Length = 465
Score = 113 bits (282), Expect = 4e-25, Method: Composition-based stats.
Identities = 60/104 (57%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 3 EKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAI 62
E R+ K ++ + ++ + CKRKE+ + +D+ +TPKKPRLVFTD+QRRTL AI
Sbjct: 345 ETFRRMWKWLQEPEFQRMSALRLAACKRKEQ-EHGKDRGNTPKKPRLVFTDVQRRTLHAI 403
Query: 63 FKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106
FKE KRPSKE+Q+TI++QLGLE +TV NFFMNARRRS+DKW+D+
Sbjct: 404 FKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWQDE 447
>sp|O95948|ONEC2_HUMAN One cut domain family member 2 OS=Homo sapiens GN=ONECUT2 PE=2 SV=2
Length = 504
Score = 108 bits (270), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/104 (57%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 3 EKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAI 62
E R+ K ++ + ++ + CKRKE+ + ++D++++ KK RLVFTDLQRRTL AI
Sbjct: 386 ETFRRMWKWLQEPEFQRMSALRLAACKRKEQ-EPNKDRNNSQKKSRLVFTDLQRRTLFAI 444
Query: 63 FKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106
FKE KRPSKEMQ+TI++QLGLE TTV NFFMNARRRS++KW+DD
Sbjct: 445 FKENKRPSKEMQITISQQLGLELTTVSNFFMNARRRSLEKWQDD 488
>sp|Q6XBJ3|ONEC2_MOUSE One cut domain family member 2 OS=Mus musculus GN=Onecut2 PE=2 SV=2
Length = 505
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/104 (57%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 3 EKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAI 62
E R+ K ++ + ++ + CKRKE+ + ++D++++ KK RLVFTDLQRRTL AI
Sbjct: 387 ETFRRMWKWLQEPEFQRMSALRLAACKRKEQ-EPNKDRNNSQKKSRLVFTDLQRRTLFAI 445
Query: 63 FKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106
FKE KRPSKEMQ+TI++QLGLE TTV NFFMNARRRS++KW+DD
Sbjct: 446 FKENKRPSKEMQITISQQLGLELTTVSNFFMNARRRSLEKWQDD 489
>sp|O60422|ONEC3_HUMAN One cut domain family member 3 OS=Homo sapiens GN=ONECUT3 PE=2 SV=2
Length = 494
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/109 (53%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 3 EKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAI 62
E R+ K ++ + ++ + CKRKE+ + ++++ PKK RLVFTDLQRRTL AI
Sbjct: 374 ETFRRMWKWLQEPEFQRMSALRLAACKRKEQ-EQQKERALQPKKQRLVFTDLQRRTLIAI 432
Query: 63 FKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPPKP 111
FKE KRPSKEMQVTI++QLGLE TV NFFMNARRR M++W ++ P
Sbjct: 433 FKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCMNRWAEEPSTAP 481
>sp|Q8K557|ONEC3_MOUSE One cut domain family member 3 OS=Mus musculus GN=Onecut3 PE=1 SV=2
Length = 490
Score = 102 bits (253), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 3 EKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAI 62
E R+ K ++ + ++ + CKRKE+ D ++++ PKK RLVFTDLQRRTL AI
Sbjct: 371 ETFRRMWKWLQEPEFQRMSALRLAACKRKEQ-DQQKERALQPKKQRLVFTDLQRRTLIAI 429
Query: 63 FKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106
FKE KRPSKEMQ TI++QLGLE TV NFFMNARRR M++W ++
Sbjct: 430 FKENKRPSKEMQATISQQLGLELNTVSNFFMNARRRCMNRWAEE 473
>sp|Q19720|HM38_CAEEL Homeobox protein ceh-38 OS=Caenorhabditis elegans GN=ceh-38 PE=2
SV=2
Length = 641
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/79 (58%), Positives = 54/79 (68%)
Query: 30 RKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVG 89
R S K+PRLVFTD+Q+RTLQAIFKET+RPS+EMQ TIA L L+ +TV
Sbjct: 413 RTHRRSTSDHDGPVSKRPRLVFTDIQKRTLQAIFKETQRPSREMQQTIAEHLRLDLSTVA 472
Query: 90 NFFMNARRRSMDKWKDDDP 108
NFFMNARRRS D+P
Sbjct: 473 NFFMNARRRSRLGGNIDEP 491
>sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis elegans GN=ceh-21 PE=2
SV=3
Length = 495
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 43 TPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
T K RL FT+ Q ++LQ F++ RP++EM+ ++ L L+ +TVGNFFMN+RRR
Sbjct: 390 TVKVIRLTFTETQLKSLQKSFQQNHRPTREMRQKLSATLELDFSTVGNFFMNSRRR 445
>sp|Q22812|HM39_CAEEL Homeobox protein ceh-39 OS=Caenorhabditis elegans GN=ceh-39 PE=3
SV=1
Length = 399
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
R FT Q +L +F++ RP++EMQ ++ L L +TVGNFFMNARRR
Sbjct: 321 RFTFTQTQLDSLHTVFQQQDRPNREMQQALSATLKLNRSTVGNFFMNARRR 371
>sp|Q9BL02|CUT_CAEEL Homeobox protein cut-like ceh-44 OS=Caenorhabditis elegans GN=ceh-44
PE=2 SV=1
Length = 1273
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 1 MVEKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDISQDQSSTPKKP--RLVFTDLQRRT 58
+VEK KE K K + ++ + KRK D + D KKP R V TD Q+ T
Sbjct: 1059 LVEKEESKETVKAKIESVPAPREAPRPVKRKHSSD-TDDYDLNTKKPIQRTVITDYQKDT 1117
Query: 59 LQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
L+ +F + PS E+ I+ +L + TV N+F N R RS
Sbjct: 1118 LRFVFVNEQHPSNELCEQISLKLDMSLRTVQNWFHNHRTRS 1158
>sp|A3BPF2|ROC7_ORYSJ Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp.
japonica GN=ROC7 PE=2 SV=1
Length = 749
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 38 QDQSSTPKKPRL-VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
QD + P+K R T Q + L+A FKE P + + ++R+LGLEP V +F N R
Sbjct: 81 QDPNQRPRKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 140
>sp|A2YR02|ROC7_ORYSI Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica
GN=ROC7 PE=3 SV=1
Length = 749
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 38 QDQSSTPKKPRL-VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
QD + P+K R T Q + L+A FKE P + + ++R+LGLEP V +F N R
Sbjct: 81 QDPNQRPRKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 140
>sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp.
japonica GN=ROC1 PE=2 SV=1
Length = 784
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 38 QDQSSTPKKPRL-VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
QD + P+K R T Q + ++A FKE P + + ++R+LGLEP V +F N R
Sbjct: 99 QDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 158
>sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A
PE=2 SV=1
Length = 382
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
PK+PR + T QRR +A F+ + +P ++++ T+A + GL V +F N R +
Sbjct: 195 PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAK 249
>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1-alpha OS=Mesocricetus auratus
GN=LMX1A PE=2 SV=1
Length = 382
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
PK+PR + T QRR +A F+ + +P ++++ T+A + GL V +F N R +
Sbjct: 195 PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAK 249
>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1-alpha OS=Mus musculus GN=Lmx1a
PE=2 SV=1
Length = 382
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
PK+PR + T QRR +A F+ + +P ++++ T+A + GL V +F N R +
Sbjct: 195 PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAK 249
>sp|Q0J9X2|ROC2_ORYSJ Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp.
japonica GN=ROC2 PE=2 SV=1
Length = 784
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 38 QDQSSTPKKPRL-VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
QD + P+K R T Q + ++A FKE P + + ++R+LGLEP V +F N R
Sbjct: 97 QDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 156
>sp|Q69T58|ROC8_ORYSJ Homeobox-leucine zipper protein ROC8 OS=Oryza sativa subsp.
japonica GN=ROC8 PE=2 SV=2
Length = 710
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 32 EEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNF 91
+EP+ S Q + R T Q + L+A+FKE P + + ++R+LGLEP + +
Sbjct: 5 DEPEGSDSQRRRKRYHR--HTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFW 62
Query: 92 FMNAR 96
F N R
Sbjct: 63 FQNRR 67
>sp|O88609|LMX1B_MOUSE LIM homeobox transcription factor 1-beta OS=Mus musculus GN=Lmx1b
PE=2 SV=2
Length = 372
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
PK+PR + T QRR +A F+ + +P ++++ T+A + GL V +F N R
Sbjct: 196 PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQR 248
>sp|O60663|LMX1B_HUMAN LIM homeobox transcription factor 1-beta OS=Homo sapiens GN=LMX1B
PE=1 SV=2
Length = 379
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
PK+PR + T QRR +A F+ + +P ++++ T+A + GL V +F N R
Sbjct: 196 PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQR 248
>sp|Q60564|LMX1B_MESAU LIM homeobox transcription factor 1-beta (Fragment) OS=Mesocricetus
auratus GN=LMX1B PE=2 SV=1
Length = 369
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
PK+PR + T QRR +A F+ + +P ++++ T+A + GL V +F N R
Sbjct: 186 PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQR 238
>sp|P53413|LMX1B_CHICK LIM/homeobox protein LMX-1.2 OS=Gallus gallus GN=LMX1B PE=2 SV=1
Length = 377
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
PK+PR + T QRR +A F+ + +P ++++ T+A + GL V +F N R
Sbjct: 195 PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQR 247
>sp|Q8UVR3|LMX1B_XENLA LIM homeobox transcription factor 1-beta.1 OS=Xenopus laevis
GN=lmx1b.1 PE=2 SV=1
Length = 400
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
PK+PR + T QRR +A F+ + +P ++++ T+A + GL V +F N R
Sbjct: 218 PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQR 270
>sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein Lhx3 OS=Homo sapiens GN=LHX3 PE=1 SV=2
Length = 397
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 28 CKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTT 87
CK E ++ +T K+PR T Q TL++ + + +P++ ++ ++ + GL+
Sbjct: 141 CKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRV 200
Query: 88 VGNFFMNARRRSMDKWKD 105
V +F N R + KD
Sbjct: 201 VQVWFQNRRAKEKRLKKD 218
>sp|P53412|LHX3_CHICK LIM/homeobox protein Lhx3 OS=Gallus gallus GN=LHX3 PE=2 SV=1
Length = 395
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 28 CKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTT 87
CK E ++ ST K+PR T Q TL+ + + +P++ ++ ++ + GL+
Sbjct: 138 CKADYETAKQREAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRV 197
Query: 88 VGNFFMNARRRSMDKWKD 105
V +F N R + KD
Sbjct: 198 VQVWFQNRRAKEKRLKKD 215
>sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Fragment) OS=Sus scrofa GN=LHX3 PE=2
SV=1
Length = 383
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 28 CKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTT 87
CK E ++ +T K+PR T Q TL++ + + +P++ ++ ++ + GL+
Sbjct: 126 CKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRV 185
Query: 88 VGNFFMNARRRSMDKWKD 105
V +F N R + KD
Sbjct: 186 VQVWFQNRRAKEKRLKKD 203
>sp|P20269|HM05_CAEEL Homeobox protein ceh-5 OS=Caenorhabditis elegans GN=ceh-5 PE=4 SV=4
Length = 134
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKW 103
PK+PR VFTD Q L+ F + S + +A LGL V +F N RR K
Sbjct: 35 PKRPRTVFTDEQLEKLEESFNTSGYLSGSTRAKLAESLGLSDNQVKVWFQN-RRTKQKKI 93
Query: 104 KDDDPPKP 111
DP KP
Sbjct: 94 DSRDPIKP 101
>sp|Q90421|LHX3_DANRE LIM/homeobox protein Lhx3 OS=Danio rerio GN=lhx3 PE=2 SV=1
Length = 398
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 28 CKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTT 87
CK E ++ ST K+PR T Q TL+ + + +P++ ++ ++ + GL+
Sbjct: 138 CKADYETAKQREADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSTETGLDMRV 197
Query: 88 VGNFFMNARRRSMDKWKD 105
V +F N R + KD
Sbjct: 198 VQVWFQNRRAKEKRLKKD 215
>sp|P50481|LHX3_MOUSE LIM/homeobox protein Lhx3 OS=Mus musculus GN=Lhx3 PE=1 SV=1
Length = 400
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 28 CKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTT 87
CK E ++ +T K+PR T Q TL++ + + +P++ ++ ++ + GL+
Sbjct: 144 CKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRV 203
Query: 88 VGNFFMNARRRSMDKWKD 105
V +F N R + KD
Sbjct: 204 VQVWFQNRRAKEKRLKKD 221
>sp|P0CJ65|ATB54_ARATH Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana
GN=ATHB-54 PE=2 SV=1
Length = 227
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 51 FTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
T +Q R L+ F+E KR + ++ +A +LGL+P+ V +F N R R
Sbjct: 72 LTPIQLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRAR 119
>sp|A8XJD0|HM30_CAEBR Homeobox protein ceh-30 OS=Caenorhabditis briggsae GN=ceh-30 PE=3
SV=1
Length = 233
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 26 KTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEP 85
T R PD + S +K R +FTD Q + L+ F++ K S + ++ +A ++GL
Sbjct: 70 STSPRASSPDRNSPMSKKSRKARTIFTDKQLQELENTFEKQKYLSVQDRMDLAHRMGLSD 129
Query: 86 TTVGNFFMNARRRSMDKWK 104
T V ++ N R KWK
Sbjct: 130 TQVKTWYQNRRT----KWK 144
>sp|P46607|HGL2_ARATH Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana
GN=GL2 PE=2 SV=3
Length = 747
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 55 QRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
Q R ++A+FKET P ++ + +++QLGL P V +F N R
Sbjct: 112 QIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRR 153
>sp|Q98876|DLX2B_DANRE Homeobox protein Dlx2b OS=Danio rerio GN=dlx2b PE=2 SV=1
Length = 276
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWK 104
+KPR +++ Q LQ F++T+ + + +A LGL T V +F N R + WK
Sbjct: 126 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLWK 185
Query: 105 DDDPPK 110
+ + P
Sbjct: 186 NGEIPA 191
>sp|P50574|DLX2A_DANRE Homeobox protein Dlx2a OS=Danio rerio GN=dlx2a PE=2 SV=1
Length = 270
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWK 104
+KPR +++ Q LQ F++T+ + + +A LGL T V +F N R + WK
Sbjct: 124 RKPRTIYSTFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLWK 183
Query: 105 DDDPP 109
+ P
Sbjct: 184 SGEIP 188
>sp|P36200|LHX3_XENLA LIM/homeobox protein Lhx3 OS=Xenopus laevis GN=lhx3 PE=1 SV=1
Length = 395
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 27 TCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPT 86
CK E ++ ST K+PR T Q TL+ + + +P++ ++ ++ + GL+
Sbjct: 137 VCKADYETAKQREAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMR 196
Query: 87 TVGNFFMNAR 96
V +F N R
Sbjct: 197 VVQVWFQNRR 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,170,130
Number of Sequences: 539616
Number of extensions: 1766839
Number of successful extensions: 86128
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2054
Number of HSP's successfully gapped in prelim test: 489
Number of HSP's that attempted gapping in prelim test: 41973
Number of HSP's gapped (non-prelim): 22198
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)