Query psy15969
Match_columns 111
No_of_seqs 157 out of 1168
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 17:40:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 8E-21 2.7E-25 119.0 6.8 68 38-109 11-78 (80)
2 2cra_A Homeobox protein HOX-B1 99.8 6.5E-21 2.2E-25 116.6 6.1 65 40-108 3-67 (70)
3 2djn_A Homeobox protein DLX-5; 99.8 7.9E-21 2.7E-25 116.2 5.7 66 40-109 3-68 (70)
4 2da2_A Alpha-fetoprotein enhan 99.8 9.6E-21 3.3E-25 115.7 5.6 66 40-109 3-68 (70)
5 2dmu_A Homeobox protein goosec 99.8 8.6E-21 2.9E-25 116.0 5.2 65 41-109 4-68 (70)
6 2kt0_A Nanog, homeobox protein 99.8 1.5E-20 5.2E-25 118.5 6.5 68 36-107 14-81 (84)
7 2da3_A Alpha-fetoprotein enhan 99.8 7.7E-21 2.6E-25 118.6 5.0 69 37-109 10-78 (80)
8 2da1_A Alpha-fetoprotein enhan 99.8 1.1E-20 3.7E-25 115.4 4.5 65 40-108 3-67 (70)
9 2e1o_A Homeobox protein PRH; D 99.8 1.9E-20 6.4E-25 114.5 5.2 65 41-109 4-68 (70)
10 1wh5_A ZF-HD homeobox family p 99.8 6.4E-20 2.2E-24 115.2 7.1 61 41-105 14-78 (80)
11 2vi6_A Homeobox protein nanog; 99.8 2.1E-20 7.2E-25 111.7 4.4 60 43-106 2-61 (62)
12 2dms_A Homeobox protein OTX2; 99.8 4.7E-20 1.6E-24 115.4 5.9 64 41-108 4-67 (80)
13 2h1k_A IPF-1, pancreatic and d 99.8 1.7E-20 5.9E-25 112.5 3.6 61 43-107 2-62 (63)
14 1nk2_P Homeobox protein VND; h 99.8 3.7E-20 1.3E-24 115.2 5.0 64 38-105 3-66 (77)
15 2da4_A Hypothetical protein DK 99.8 1.6E-20 5.3E-25 117.6 3.1 66 40-109 4-73 (80)
16 2m0c_A Homeobox protein arista 99.8 6.1E-20 2.1E-24 113.2 5.7 66 39-108 4-69 (75)
17 1wh7_A ZF-HD homeobox family p 99.8 8.4E-20 2.9E-24 114.8 6.3 63 38-105 11-78 (80)
18 1bw5_A ISL-1HD, insulin gene e 99.8 5E-20 1.7E-24 111.4 4.9 60 44-107 3-62 (66)
19 2cue_A Paired box protein PAX6 99.8 3.7E-20 1.3E-24 115.9 4.3 62 41-106 4-65 (80)
20 2hdd_A Protein (engrailed home 99.8 2.8E-20 9.7E-25 110.9 3.6 58 44-105 3-60 (61)
21 1puf_A HOX-1.7, homeobox prote 99.8 7.1E-20 2.4E-24 113.9 5.4 66 37-106 6-71 (77)
22 1ig7_A Homeotic protein MSX-1; 99.8 4.2E-20 1.4E-24 108.9 3.8 57 45-105 1-57 (58)
23 2l7z_A Homeobox protein HOX-A1 99.8 1E-19 3.5E-24 112.2 5.6 64 41-108 4-67 (73)
24 2dmq_A LIM/homeobox protein LH 99.8 6.2E-20 2.1E-24 114.7 4.6 62 41-106 4-65 (80)
25 1jgg_A Segmentation protein EV 99.8 6.3E-20 2.1E-24 109.0 3.8 58 45-106 2-59 (60)
26 1fjl_A Paired protein; DNA-bin 99.8 7.2E-20 2.5E-24 114.8 3.9 63 40-106 14-76 (81)
27 1b8i_A Ultrabithorax, protein 99.8 9.6E-20 3.3E-24 114.4 4.5 65 40-108 16-80 (81)
28 3rkq_A Homeobox protein NKX-2. 99.8 1.1E-19 3.9E-24 106.7 4.3 54 44-97 2-55 (58)
29 2k40_A Homeobox expressed in E 99.8 1.3E-19 4.4E-24 109.9 4.6 61 44-108 1-61 (67)
30 2r5y_A Homeotic protein sex co 99.8 8.7E-20 3E-24 116.1 3.9 65 39-107 23-87 (88)
31 1ftt_A TTF-1 HD, thyroid trans 99.8 1.4E-19 4.8E-24 110.1 4.6 61 44-108 2-62 (68)
32 1ahd_P Antennapedia protein mu 99.8 7.3E-20 2.5E-24 111.4 3.2 60 44-107 2-61 (68)
33 1akh_A Protein (mating-type pr 99.8 9E-20 3.1E-24 108.5 3.5 55 43-97 4-58 (61)
34 3a01_A Homeodomain-containing 99.8 1.5E-19 5.1E-24 116.3 4.7 64 39-106 12-75 (93)
35 1zq3_P PRD-4, homeotic bicoid 99.8 9.8E-20 3.3E-24 110.8 3.6 59 44-106 2-60 (68)
36 2da5_A Zinc fingers and homeob 99.8 2.7E-19 9.2E-24 110.9 5.6 58 46-107 9-66 (75)
37 2dn0_A Zinc fingers and homeob 99.8 2.9E-19 9.9E-24 110.8 5.5 61 43-107 7-67 (76)
38 1yz8_P Pituitary homeobox 2; D 99.8 4.3E-20 1.5E-24 112.3 1.4 62 43-108 2-63 (68)
39 3a02_A Homeobox protein arista 99.8 1.3E-19 4.5E-24 107.6 3.4 57 47-107 2-58 (60)
40 2ly9_A Zinc fingers and homeob 99.8 8.3E-19 2.9E-23 108.0 5.9 62 43-108 5-66 (74)
41 1du6_A PBX1, homeobox protein 99.8 5.2E-19 1.8E-23 106.2 4.5 59 43-105 2-63 (64)
42 1uhs_A HOP, homeodomain only p 99.8 3.7E-19 1.3E-23 109.3 3.7 59 45-107 2-61 (72)
43 3a03_A T-cell leukemia homeobo 99.8 2.8E-19 9.5E-24 105.0 2.8 54 49-106 2-55 (56)
44 1x2n_A Homeobox protein pknox1 99.8 9.8E-19 3.3E-23 107.5 5.3 63 41-107 4-69 (73)
45 3nar_A ZHX1, zinc fingers and 99.8 5.8E-19 2E-23 114.0 4.3 64 40-107 21-84 (96)
46 1b72_A Protein (homeobox prote 99.7 3.8E-19 1.3E-23 115.0 3.4 64 39-106 29-92 (97)
47 2dmn_A Homeobox protein TGIF2L 99.7 1.3E-18 4.4E-23 109.8 5.5 63 41-103 4-69 (83)
48 2hi3_A Homeodomain-only protei 99.7 7.7E-19 2.6E-23 108.1 3.8 59 45-107 3-62 (73)
49 1wi3_A DNA-binding protein SAT 99.7 1.5E-18 5E-23 105.8 4.9 58 40-97 3-61 (71)
50 2ecc_A Homeobox and leucine zi 99.7 1.1E-18 3.9E-23 108.7 4.4 56 47-106 6-61 (76)
51 1puf_B PRE-B-cell leukemia tra 99.7 1.6E-18 5.5E-23 106.6 4.5 60 45-108 2-64 (73)
52 2cuf_A FLJ21616 protein; homeo 99.7 1.7E-18 6E-23 111.5 3.8 62 41-106 4-80 (95)
53 1k61_A Mating-type protein alp 99.7 3.3E-18 1.1E-22 101.4 4.0 54 48-105 2-58 (60)
54 1au7_A Protein PIT-1, GHF-1; c 99.7 5.6E-18 1.9E-22 116.9 4.3 63 40-106 83-145 (146)
55 1b72_B Protein (PBX1); homeodo 99.7 5.6E-18 1.9E-22 107.2 3.7 58 45-106 2-62 (87)
56 2cqx_A LAG1 longevity assuranc 99.7 3.9E-18 1.3E-22 105.1 2.8 63 43-109 7-70 (72)
57 2d5v_A Hepatocyte nuclear fact 99.7 7.2E-18 2.5E-22 117.9 4.4 76 27-107 81-156 (164)
58 2ecb_A Zinc fingers and homeob 99.7 1.7E-17 5.7E-22 106.2 5.6 53 50-106 17-69 (89)
59 1e3o_C Octamer-binding transcr 99.7 7E-18 2.4E-22 117.9 4.2 62 41-106 98-159 (160)
60 2dmp_A Zinc fingers and homeob 99.7 3.3E-17 1.1E-21 104.6 6.2 56 48-107 17-72 (89)
61 2l9r_A Homeobox protein NKX-3. 99.7 1.5E-17 5E-22 101.9 4.3 58 47-108 7-64 (69)
62 1mnm_C Protein (MAT alpha-2 tr 99.7 1.3E-17 4.5E-22 105.8 4.1 56 42-97 25-83 (87)
63 2xsd_C POU domain, class 3, tr 99.7 1E-17 3.5E-22 117.6 3.8 65 41-109 96-160 (164)
64 1le8_B Mating-type protein alp 99.7 1.9E-17 6.3E-22 104.3 4.6 58 46-107 4-64 (83)
65 2e19_A Transcription factor 8; 99.7 3.2E-17 1.1E-21 98.9 5.3 56 49-108 8-63 (64)
66 3d1n_I POU domain, class 6, tr 99.7 2.3E-17 7.8E-22 114.2 5.1 62 40-105 89-150 (151)
67 3nau_A Zinc fingers and homeob 99.7 1.6E-17 5.5E-22 100.7 2.6 51 51-105 11-61 (66)
68 1lfb_A Liver transcription fac 99.7 2.7E-17 9.4E-22 107.1 3.9 60 41-100 6-86 (99)
69 2da6_A Hepatocyte nuclear fact 99.7 4.3E-17 1.5E-21 106.6 4.5 57 41-97 3-80 (102)
70 1x2m_A LAG1 longevity assuranc 99.7 3E-17 1E-21 99.2 3.4 54 53-110 9-63 (64)
71 3l1p_A POU domain, class 5, tr 99.6 4.3E-17 1.5E-21 113.4 2.9 60 42-105 94-153 (155)
72 3k2a_A Homeobox protein MEIS2; 99.6 3.7E-16 1.3E-20 94.8 3.4 54 49-106 3-59 (67)
73 2da7_A Zinc finger homeobox pr 99.5 3.2E-15 1.1E-19 91.3 3.4 45 53-97 14-58 (71)
74 1ic8_A Hepatocyte nuclear fact 99.5 2.1E-15 7.2E-20 108.5 1.1 57 41-97 112-189 (194)
75 2h8r_A Hepatocyte nuclear fact 99.5 1.5E-14 5.1E-19 105.7 4.2 58 40-97 138-216 (221)
76 2lk2_A Homeobox protein TGIF1; 99.4 1.3E-14 4.3E-19 92.7 0.8 52 49-100 10-64 (89)
77 1mh3_A Maltose binding-A1 home 99.3 7.8E-13 2.7E-17 101.4 3.8 51 47-97 368-418 (421)
78 2nzz_A Penetratin conjugated G 98.3 7.7E-08 2.6E-12 51.7 -0.1 17 86-106 1-17 (37)
79 2ys9_A Homeobox and leucine zi 96.2 0.0023 8E-08 38.6 2.2 45 51-95 13-57 (70)
80 2glo_A Brinker CG9653-PA; prot 88.9 0.28 9.5E-06 27.5 2.4 45 48-93 3-47 (59)
81 1hlv_A CENP-B, major centromer 82.2 1.8 6.3E-05 27.3 4.1 48 47-97 4-51 (131)
82 1tc3_C Protein (TC3 transposas 81.3 1.8 6.2E-05 21.9 3.3 40 50-94 5-44 (51)
83 2elh_A CG11849-PA, LD40883P; s 78.2 3.3 0.00011 24.7 4.1 44 46-94 18-61 (87)
84 3dtp_E RLC, myosin regulatory 76.9 5 0.00017 26.7 5.2 37 49-85 49-90 (196)
85 1iuf_A Centromere ABP1 protein 75.1 5.3 0.00018 26.1 4.8 51 45-95 6-60 (144)
86 2jn6_A Protein CGL2762, transp 75.0 3.3 0.00011 24.9 3.5 43 48-94 3-46 (97)
87 1jko_C HIN recombinase, DNA-in 72.2 1.5 5E-05 22.7 1.2 41 50-95 5-45 (52)
88 2rn7_A IS629 ORFA; helix, all 68.8 5.6 0.00019 24.3 3.6 47 48-94 4-53 (108)
89 2rgt_A Fusion of LIM/homeobox 66.7 0.051 1.7E-06 37.0 -7.0 30 42-71 134-163 (169)
90 2o8x_A Probable RNA polymerase 65.3 3 0.0001 23.1 1.6 43 50-97 15-57 (70)
91 3hug_A RNA polymerase sigma fa 64.2 2.8 9.4E-05 25.1 1.4 42 51-97 38-79 (92)
92 1p4w_A RCSB; solution structur 63.9 4.5 0.00015 25.0 2.4 44 48-97 32-75 (99)
93 2x48_A CAG38821; archeal virus 63.7 5.1 0.00017 21.3 2.3 39 50-93 13-53 (55)
94 1ku3_A Sigma factor SIGA; heli 59.6 7.6 0.00026 22.0 2.7 47 50-97 10-56 (73)
95 3i5g_B Myosin regulatory light 58.6 27 0.00091 22.4 5.6 39 48-86 7-50 (153)
96 2p7v_B Sigma-70, RNA polymeras 56.7 5.3 0.00018 22.3 1.6 47 50-97 5-51 (68)
97 1u78_A TC3 transposase, transp 55.6 11 0.00038 23.4 3.2 42 49-95 5-46 (141)
98 1s7o_A Hypothetical UPF0122 pr 55.6 7.6 0.00026 24.5 2.4 43 50-97 22-64 (113)
99 1fse_A GERE; helix-turn-helix 54.9 9.4 0.00032 21.2 2.5 43 49-97 10-52 (74)
100 3c57_A Two component transcrip 53.1 6.1 0.00021 23.8 1.6 43 49-97 26-68 (95)
101 1je8_A Nitrate/nitrite respons 52.4 8.5 0.00029 22.5 2.1 45 47-97 18-62 (82)
102 1tty_A Sigma-A, RNA polymerase 49.5 8.9 0.0003 22.6 1.9 47 50-97 18-64 (87)
103 1fi6_A EH domain protein REPS1 49.2 12 0.00042 21.9 2.5 44 50-93 2-50 (92)
104 2kvr_A Ubiquitin carboxyl-term 49.1 10 0.00036 24.7 2.3 24 74-97 72-95 (130)
105 1pdn_C Protein (PRD paired); p 48.0 15 0.00051 22.2 2.9 40 50-94 17-56 (128)
106 3fmy_A HTH-type transcriptiona 47.6 18 0.00062 20.3 3.0 41 49-96 9-49 (73)
107 1rzs_A Antirepressor, regulato 47.4 6.2 0.00021 21.9 0.9 19 74-92 13-31 (61)
108 3mzy_A RNA polymerase sigma-H 47.1 7.1 0.00024 24.7 1.2 25 73-97 126-150 (164)
109 1xsv_A Hypothetical UPF0122 pr 45.2 12 0.00041 23.4 2.1 43 50-97 25-67 (113)
110 3ulq_B Transcriptional regulat 45.1 21 0.00071 21.4 3.1 45 47-97 26-70 (90)
111 2pmy_A RAS and EF-hand domain- 44.6 10 0.00034 22.1 1.5 46 48-93 18-68 (91)
112 1x3u_A Transcriptional regulat 43.7 9.4 0.00032 21.6 1.3 41 51-97 17-57 (79)
113 2xi8_A Putative transcription 42.9 7.7 0.00026 20.8 0.8 23 74-96 17-39 (66)
114 3bd1_A CRO protein; transcript 42.1 7.4 0.00025 22.2 0.6 23 74-96 14-36 (79)
115 2lhi_A Calmodulin, serine/thre 41.8 22 0.00076 23.3 3.1 39 48-86 2-45 (176)
116 2r1j_L Repressor protein C2; p 41.8 8.5 0.00029 20.7 0.9 23 74-96 21-43 (68)
117 2v79_A DNA replication protein 41.5 16 0.00054 23.8 2.3 41 51-94 30-74 (135)
118 2hin_A GP39, repressor protein 41.2 7.3 0.00025 22.8 0.5 21 74-94 13-33 (71)
119 2q24_A Putative TETR family tr 41.2 9.6 0.00033 24.7 1.2 39 55-95 20-58 (194)
120 1zug_A Phage 434 CRO protein; 40.4 8.8 0.0003 20.9 0.8 24 74-97 19-42 (71)
121 3o9x_A Uncharacterized HTH-typ 40.2 23 0.00079 22.2 2.9 23 74-96 87-109 (133)
122 3i5g_C Myosin catalytic light 38.7 28 0.00096 22.4 3.2 37 50-86 2-45 (159)
123 2cqr_A RSGI RUH-043, DNAJ homo 38.4 59 0.002 18.9 5.0 49 45-93 15-64 (73)
124 1c07_A Protein (epidermal grow 37.9 16 0.00054 21.6 1.7 43 51-93 4-51 (95)
125 1or7_A Sigma-24, RNA polymeras 37.8 12 0.00042 24.5 1.3 25 73-97 158-182 (194)
126 2rnj_A Response regulator prot 37.5 10 0.00035 22.4 0.8 43 49-97 28-70 (91)
127 2qwt_A Transcriptional regulat 36.8 15 0.00052 23.9 1.6 38 56-95 19-56 (196)
128 1r69_A Repressor protein CI; g 36.5 11 0.00038 20.3 0.8 24 74-97 17-40 (69)
129 2hxi_A Putative transcriptiona 36.3 17 0.00057 25.2 1.9 48 47-95 25-73 (241)
130 1j9i_A GPNU1 DBD;, terminase s 36.2 12 0.0004 21.1 0.9 22 74-95 5-26 (68)
131 1rp3_A RNA polymerase sigma fa 35.9 14 0.00046 25.0 1.3 42 51-97 188-229 (239)
132 2b5a_A C.BCLI; helix-turn-heli 35.6 12 0.00041 20.7 0.8 23 74-96 26-48 (77)
133 1adr_A P22 C2 repressor; trans 35.4 12 0.0004 20.7 0.8 23 74-96 21-43 (76)
134 3b7h_A Prophage LP1 protein 11 34.0 13 0.00045 20.6 0.8 23 74-96 23-45 (78)
135 1aih_A HP1 integrase; DNA inte 33.0 92 0.0032 19.6 5.2 40 48-87 4-43 (170)
136 3ccy_A Putative TETR-family tr 32.5 39 0.0013 21.8 3.1 39 56-95 20-58 (203)
137 3i9v_2 NADH-quinone oxidoreduc 31.9 41 0.0014 23.0 3.3 35 54-88 26-60 (181)
138 2kpj_A SOS-response transcript 31.1 15 0.00052 21.5 0.8 23 74-96 25-47 (94)
139 3kz3_A Repressor protein CI; f 30.0 75 0.0026 17.6 4.1 26 67-92 50-75 (80)
140 3j04_B Myosin regulatory light 29.8 92 0.0031 18.5 5.0 35 51-85 1-40 (143)
141 2a6c_A Helix-turn-helix motif; 29.2 18 0.0006 20.8 0.8 23 74-96 34-56 (83)
142 2jpc_A SSRB; DNA binding prote 28.8 14 0.00047 19.8 0.3 24 74-97 16-39 (61)
143 1dtl_A Cardiac troponin C; hel 28.5 59 0.002 19.9 3.4 45 49-93 10-62 (161)
144 1l0o_C Sigma factor; bergerat 28.4 12 0.00041 25.2 0.0 42 51-97 199-240 (243)
145 3t76_A VANU, transcriptional r 28.4 94 0.0032 18.3 4.3 21 67-87 61-81 (88)
146 3lsg_A Two-component response 28.2 21 0.00072 21.2 1.1 23 72-94 20-42 (103)
147 2ict_A Antitoxin HIGA; helix-t 28.1 18 0.0006 21.2 0.7 23 74-96 24-46 (94)
148 2wiu_B HTH-type transcriptiona 28.1 19 0.00066 20.4 0.9 23 74-96 28-50 (88)
149 2rek_A Putative TETR-family tr 28.0 14 0.00048 23.9 0.3 38 56-95 22-59 (199)
150 1neq_A DNA-binding protein NER 27.8 21 0.00071 20.6 1.0 21 74-94 25-45 (74)
151 2iu5_A DHAS, YCEG, HTH-type dh 27.7 37 0.0013 21.8 2.4 40 55-95 18-57 (195)
152 3him_A Probable transcriptiona 27.7 39 0.0013 21.5 2.5 40 55-95 21-60 (211)
153 2x4h_A Hypothetical protein SS 27.7 27 0.00093 21.7 1.6 41 50-90 10-50 (139)
154 2ef8_A C.ECOT38IS, putative tr 27.5 19 0.00067 20.2 0.8 23 74-96 26-48 (84)
155 2k27_A Paired box protein PAX- 27.4 1.2E+02 0.0042 19.2 5.8 50 48-97 81-137 (159)
156 2lv7_A Calcium-binding protein 27.3 93 0.0032 18.4 4.1 46 48-93 27-79 (100)
157 3jsj_A Putative TETR-family tr 27.1 23 0.00079 22.6 1.2 39 55-95 14-52 (190)
158 3qqa_A CMER; alpha-helical, he 27.1 50 0.0017 21.2 2.9 39 56-95 25-63 (216)
159 2d1h_A ST1889, 109AA long hypo 27.1 59 0.002 18.7 3.1 40 50-92 18-57 (109)
160 2fd5_A Transcriptional regulat 26.8 48 0.0016 20.8 2.7 39 56-95 13-51 (180)
161 3f6w_A XRE-family like protein 26.3 21 0.0007 20.2 0.8 23 74-96 30-52 (83)
162 2k9q_A Uncharacterized protein 26.2 22 0.00074 19.9 0.8 22 74-95 18-39 (77)
163 2jml_A DNA binding domain/tran 25.7 16 0.00054 21.3 0.2 20 74-93 8-27 (81)
164 2q0o_A Probable transcriptiona 25.7 57 0.0019 22.4 3.1 44 48-97 173-216 (236)
165 3ppb_A Putative TETR family tr 25.6 34 0.0012 21.5 1.8 40 55-95 14-53 (195)
166 2mys_C Myosin; muscle protein, 25.6 1.1E+02 0.0038 18.1 4.7 42 51-92 2-50 (149)
167 3qbm_A TETR transcriptional re 25.3 31 0.001 21.9 1.6 39 56-95 13-51 (199)
168 1eh2_A EPS15; calcium binding, 25.2 73 0.0025 19.4 3.3 44 49-92 7-54 (106)
169 3rd3_A Probable transcriptiona 25.0 33 0.0011 21.7 1.7 39 56-95 16-54 (197)
170 2pij_A Prophage PFL 6 CRO; tra 24.7 22 0.00076 19.2 0.7 23 74-96 16-38 (67)
171 2l49_A C protein; P2 bacteriop 24.5 27 0.00092 20.4 1.1 23 74-96 20-42 (99)
172 3nrg_A TETR family transcripti 24.3 48 0.0016 21.3 2.4 39 56-95 19-57 (217)
173 2xdn_A HTH-type transcriptiona 23.9 38 0.0013 22.0 1.9 39 56-95 17-55 (210)
174 3s8q_A R-M controller protein; 23.9 26 0.0009 19.7 0.9 23 74-96 27-49 (82)
175 1qgp_A Protein (double strande 23.4 18 0.0006 21.2 0.1 42 51-92 11-52 (77)
176 2l8n_A Transcriptional repress 23.3 29 0.00099 19.7 1.0 22 74-95 12-33 (67)
177 3clo_A Transcriptional regulat 23.2 54 0.0018 22.9 2.7 43 49-97 196-238 (258)
178 1sgm_A Putative HTH-type trans 23.1 46 0.0016 20.8 2.1 38 56-94 12-49 (191)
179 3o48_A Mitochondria fission 1 23.1 1.3E+02 0.0043 19.8 4.2 33 49-81 16-50 (134)
180 4aik_A Transcriptional regulat 23.1 1E+02 0.0034 19.6 3.8 37 50-89 28-64 (151)
181 3kz9_A SMCR; transcriptional r 22.9 39 0.0013 21.4 1.8 39 56-95 23-61 (206)
182 2opo_A Polcalcin CHE A 3; calc 22.9 41 0.0014 18.6 1.6 43 50-92 4-52 (86)
183 3qq6_A HTH-type transcriptiona 22.6 29 0.00099 19.6 0.9 21 74-94 26-46 (78)
184 2fe3_A Peroxide operon regulat 22.5 1.2E+02 0.0041 19.3 4.1 32 49-80 18-49 (145)
185 3gzi_A Transcriptional regulat 22.4 44 0.0015 21.6 2.0 39 56-95 23-61 (218)
186 3kkc_A TETR family transcripti 22.4 39 0.0013 21.1 1.6 39 56-95 18-56 (177)
187 3dcf_A Transcriptional regulat 22.3 42 0.0014 21.6 1.8 39 56-95 37-75 (218)
188 1x57_A Endothelial differentia 22.2 26 0.00089 20.2 0.7 23 74-96 29-51 (91)
189 1mzb_A Ferric uptake regulatio 22.1 1.3E+02 0.0043 18.9 4.1 33 49-81 14-47 (136)
190 3t72_q RNA polymerase sigma fa 22.1 69 0.0024 19.5 2.7 47 50-97 19-65 (99)
191 3aqt_A Bacterial regulatory pr 22.0 42 0.0014 22.7 1.8 39 56-95 52-90 (245)
192 3g3z_A NMB1585, transcriptiona 21.9 58 0.002 20.0 2.4 37 50-90 28-64 (145)
193 3f3x_A Transcriptional regulat 21.9 57 0.0019 20.1 2.3 36 50-90 34-69 (144)
194 2qko_A Possible transcriptiona 21.9 50 0.0017 21.5 2.1 39 56-95 34-72 (215)
195 2mys_B Myosin; muscle protein, 21.8 99 0.0034 19.0 3.6 44 50-93 18-69 (166)
196 3fiw_A Putative TETR-family tr 21.6 33 0.0011 23.1 1.2 48 47-95 21-69 (211)
197 2ktg_A Calmodulin, putative; e 21.4 52 0.0018 18.1 1.9 44 49-92 6-56 (85)
198 3bru_A Regulatory protein, TET 21.4 45 0.0015 21.6 1.8 39 56-95 36-74 (222)
199 3b81_A Transcriptional regulat 21.3 41 0.0014 21.4 1.6 39 56-95 17-55 (203)
200 3qkx_A Uncharacterized HTH-typ 21.3 46 0.0016 20.8 1.8 39 56-95 14-52 (188)
201 2jt1_A PEFI protein; solution 21.2 35 0.0012 20.1 1.1 23 67-91 22-44 (77)
202 1xwr_A Regulatory protein CII; 21.0 38 0.0013 21.0 1.3 18 74-91 26-43 (97)
203 1k78_A Paired box protein PAX5 21.0 1.6E+02 0.0055 18.3 5.9 48 48-95 88-142 (149)
204 2fq4_A Transcriptional regulat 21.0 38 0.0013 21.8 1.3 39 56-95 18-56 (192)
205 1wj7_A Hypothetical protein (R 21.0 1.6E+02 0.0056 18.4 4.5 46 43-89 12-58 (104)
206 1t33_A Putative transcriptiona 20.8 22 0.00075 23.3 0.1 38 56-95 18-55 (224)
207 3k2z_A LEXA repressor; winged 20.8 45 0.0015 22.4 1.7 41 50-92 2-45 (196)
208 1uxc_A FRUR (1-57), fructose r 20.7 29 0.001 19.5 0.7 23 74-96 3-25 (65)
209 2ras_A Transcriptional regulat 20.7 43 0.0015 21.6 1.6 39 56-95 17-55 (212)
210 4ets_A Ferric uptake regulatio 20.6 1.1E+02 0.0038 20.1 3.7 33 49-81 29-61 (162)
211 1wdc_C Scallop myosin; calcium 20.6 73 0.0025 19.4 2.6 36 50-85 2-44 (156)
212 1sfx_A Conserved hypothetical 20.6 70 0.0024 18.3 2.4 39 50-92 17-55 (109)
213 2zcm_A Biofilm operon icaabcd 20.4 49 0.0017 21.0 1.8 41 54-95 11-51 (192)
214 2lfw_A PHYR sigma-like domain; 20.4 16 0.00055 23.6 -0.6 43 50-97 93-135 (157)
215 2xig_A Ferric uptake regulatio 20.3 1.2E+02 0.0041 19.5 3.7 32 50-81 24-55 (150)
216 2ofy_A Putative XRE-family tra 20.3 33 0.0011 19.4 0.8 23 74-96 30-52 (86)
217 3bqz_B HTH-type transcriptiona 20.3 38 0.0013 21.4 1.2 39 56-95 8-46 (194)
218 3eyy_A Putative iron uptake re 20.3 1.4E+02 0.0046 19.1 4.0 31 49-80 15-45 (145)
219 3u0k_A Rcamp; fluorescent prot 20.2 1.3E+02 0.0044 23.7 4.4 39 47-85 292-335 (440)
220 3vib_A MTRR; helix-turn-helix 20.1 39 0.0013 21.9 1.3 39 56-95 16-54 (210)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8e-21 Score=118.99 Aligned_cols=68 Identities=31% Similarity=0.525 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCC
Q psy15969 38 QDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPP 109 (111)
Q Consensus 38 ~~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~ 109 (111)
++.....++.|+.||.+|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++....
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~----k~kk~~~s 78 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRM----KWKKSGPS 78 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHSCCCSC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHH----HhhcccCC
Confidence 344566788999999999999999999999999999999999999999999999999999 88887654
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=6.5e-21 Score=116.59 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=60.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
+....++.|+.||+.|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~----k~kk~~~ 67 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRV----KEKKSGP 67 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH----TTTSSCT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHH----HhcccCC
Confidence 3456778899999999999999999999999999999999999999999999999999 8887654
No 3
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.9e-21 Score=116.21 Aligned_cols=66 Identities=32% Similarity=0.485 Sum_probs=60.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCC
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPP 109 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~ 109 (111)
.++..++.|+.||.+|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+ ++++....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kk~~~s 68 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRS----KIKKSGPS 68 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHH----TCSSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhh----hhcccCCC
Confidence 3456788999999999999999999999999999999999999999999999999999 88876554
No 4
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=9.6e-21 Score=115.66 Aligned_cols=66 Identities=29% Similarity=0.434 Sum_probs=60.9
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCC
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPP 109 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~ 109 (111)
.....++.|+.||++|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++....
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~----k~kk~~~~ 68 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQ----KARKSGPS 68 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHH----HHCCCSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhH----HHhhcccc
Confidence 3456788999999999999999999999999999999999999999999999999999 88887654
No 5
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.6e-21 Score=115.97 Aligned_cols=65 Identities=34% Similarity=0.595 Sum_probs=60.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCC
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPP 109 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~ 109 (111)
.+..++.|+.||.+|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++....
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~----k~rr~~~~ 68 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRA----KWRRSGPS 68 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHTSTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccc----cccccCCC
Confidence 455778899999999999999999999999999999999999999999999999999 88876553
No 6
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=118.46 Aligned_cols=68 Identities=25% Similarity=0.237 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 36 ISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 36 ~~~~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
..+......++.|+.||..|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++..
T Consensus 14 ~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~----k~kk~~ 81 (84)
T 2kt0_A 14 KEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRM----KSKRWQ 81 (84)
T ss_dssp CSCCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTTSCC
T ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHh
Confidence 33344567788999999999999999999999999999999999999999999999999999 777654
No 7
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=7.7e-21 Score=118.64 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCC
Q psy15969 37 SQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPP 109 (111)
Q Consensus 37 ~~~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~ 109 (111)
.+......++.|+.||.+|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++....
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kk~~~~ 78 (80)
T 2da3_A 10 GGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRA----RERKSGPS 78 (80)
T ss_dssp CCCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HHHSSCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHH----hHhhhccC
Confidence 3444667788999999999999999999999999999999999999999999999999999 88886543
No 8
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-20 Score=115.45 Aligned_cols=65 Identities=31% Similarity=0.428 Sum_probs=60.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
.....++.|+.||.+|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+ ++++...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~----k~kk~~~ 67 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLF----KERQSGP 67 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHH----HHHCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhH----HHhhhcc
Confidence 3456788999999999999999999999999999999999999999999999999999 8887654
No 9
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.9e-20 Score=114.52 Aligned_cols=65 Identities=28% Similarity=0.420 Sum_probs=59.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCC
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPP 109 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~ 109 (111)
.+..++.|+.||.+|+.+|+.+|..++||+..++..||..|||++.+|++||+|+|+ ++++....
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~rr~~~~ 68 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRA----KWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----HHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHh----hcCCCCCC
Confidence 445677899999999999999999999999999999999999999999999999999 88876654
No 10
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=6.4e-20 Score=115.21 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=57.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKE----TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~----~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
....++.||.||.+|+..|+.+|+. ++||+..++.+||..|||++.+|+|||||+|+ +++.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRa----K~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKH----SGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSS----SSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCc----CCCC
Confidence 4567889999999999999999999 99999999999999999999999999999999 7765
No 11
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.80 E-value=2.1e-20 Score=111.75 Aligned_cols=60 Identities=30% Similarity=0.303 Sum_probs=52.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 43 TPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 43 ~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
..++.|+.||++|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+ ++++.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~----k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRM----KCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----TCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhc----chhhc
Confidence 3567899999999999999999999999999999999999999999999999999 77764
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.7e-20 Score=115.40 Aligned_cols=64 Identities=28% Similarity=0.435 Sum_probs=58.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
....++.|+.||.+|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~----k~rk~~~ 67 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRA----KCRQQQQ 67 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHT----HHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhH----HhhHHHH
Confidence 456788999999999999999999999999999999999999999999999999999 6666543
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.80 E-value=1.7e-20 Score=112.52 Aligned_cols=61 Identities=30% Similarity=0.415 Sum_probs=55.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 43 TPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 43 ~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
..++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+ ++++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~----k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRM----KWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhh----hhhhhc
Confidence 3567899999999999999999999999999999999999999999999999999 887653
No 14
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.80 E-value=3.7e-20 Score=115.16 Aligned_cols=64 Identities=28% Similarity=0.371 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 38 QDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 38 ~~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
++.....++.|+.||..|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++
T Consensus 3 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~----k~kr 66 (77)
T 1nk2_P 3 DGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY----KTKR 66 (77)
T ss_dssp SCCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----HHHH
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhc----chhh
Confidence 344566788899999999999999999999999999999999999999999999999999 6654
No 15
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-20 Score=117.59 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=60.2
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCC
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKET----KRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPP 109 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~----~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~ 109 (111)
.....++.|+.||.+|+.+|+.+|..+ +||+..++..||..|||++.+|+|||||+|+ ++++....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~----k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRR----KYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHH----HHhhccCC
Confidence 345678899999999999999999999 9999999999999999999999999999999 88776543
No 16
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-20 Score=113.18 Aligned_cols=66 Identities=24% Similarity=0.449 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 39 DQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 39 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
+..+..++.|+.||+.|+.+|+.+|..++||+..++..||..+||++.+|++||+|+|+ ++++...
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kk~~r 69 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRA----KWRKRER 69 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHTCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHH----HHHHHHh
Confidence 34556788899999999999999999999999999999999999999999999999999 7776543
No 17
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.80 E-value=8.4e-20 Score=114.78 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 38 QDQSSTPKKPRLVFTDLQRRTLQAIFKE-----TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 38 ~~~~~~~rr~Rt~ft~~ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
++.....++.||.||.+|+..|+ .|.. ++||+..++.+||..|||++.+|+|||||+|+ +++.
T Consensus 11 ~~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~----k~~~ 78 (80)
T 1wh7_A 11 SSSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKN----SGPS 78 (80)
T ss_dssp CCCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSC----CSCC
T ss_pred CCCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccccccccccc----CCCC
Confidence 34455678899999999999999 7999 99999999999999999999999999999999 7765
No 18
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=5e-20 Score=111.36 Aligned_cols=60 Identities=27% Similarity=0.413 Sum_probs=56.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 44 ~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
.++.|+.||++|+.+|+.+|..++||+..++..||..+||++.+|++||+|+|+ ++++..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC----KDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHH----HHhHHh
Confidence 567899999999999999999999999999999999999999999999999999 777654
No 19
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=3.7e-20 Score=115.94 Aligned_cols=62 Identities=26% Similarity=0.442 Sum_probs=57.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
.+..++.|+.||.+|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~----k~kk~ 65 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRA----KWRRE 65 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----HHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHH----HHHHH
Confidence 456778999999999999999999999999999999999999999999999999999 77664
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.79 E-value=2.8e-20 Score=110.86 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=52.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 44 ~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
.++.|+.||++|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+ ++++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRA----KIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcc----cccc
Confidence 467899999999999999999999999999999999999999999999999999 7765
No 21
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.79 E-value=7.1e-20 Score=113.88 Aligned_cols=66 Identities=24% Similarity=0.248 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 37 SQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 37 ~~~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
+.......++.|+.||..|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++.
T Consensus 6 ~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~----k~kk~ 71 (77)
T 1puf_A 6 NWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM----KMKKI 71 (77)
T ss_dssp TSCCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH----HHHHh
Confidence 3445566788999999999999999999999999999999999999999999999999999 77654
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=4.2e-20 Score=108.93 Aligned_cols=57 Identities=32% Similarity=0.382 Sum_probs=54.1
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 45 rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
++.|+.||++|+.+|+..|..++||+..++..||..+||++.+|++||||+|+ ++++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA----KAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----HHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhh----hhcc
Confidence 46789999999999999999999999999999999999999999999999999 7765
No 23
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.79 E-value=1e-19 Score=112.20 Aligned_cols=64 Identities=23% Similarity=0.237 Sum_probs=58.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
....++.|+.||+.|+.+|+..|..++||+..++..||..+||++.+|++||||+|+ ++++...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~----k~kk~~~ 67 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRV----KEKKVIN 67 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHH----HHTTSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhH----HHHHHhc
Confidence 345678899999999999999999999999999999999999999999999999999 7776543
No 24
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.2e-20 Score=114.68 Aligned_cols=62 Identities=27% Similarity=0.435 Sum_probs=57.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
....++.|+.||.+|+.+|+.+|..++||+..++..||..|||++.+|++||+|+|+ ++++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kk~ 65 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARA----KFRRN 65 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH----HHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHH----HHHHH
Confidence 456788999999999999999999999999999999999999999999999999999 66653
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=6.3e-20 Score=109.03 Aligned_cols=58 Identities=29% Similarity=0.325 Sum_probs=54.3
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 45 rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
++.|+.||++|+..|+..|..++||+..++..||..+||++.+|++||+|+|+ +++++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM----KDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHh----Hhhcc
Confidence 56899999999999999999999999999999999999999999999999999 77653
No 26
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.78 E-value=7.2e-20 Score=114.78 Aligned_cols=63 Identities=19% Similarity=0.345 Sum_probs=57.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
.....++.|+.||..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+ ++++.
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~----k~rk~ 76 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRA----RLRKQ 76 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhh----hhhhh
Confidence 3556788999999999999999999999999999999999999999999999999999 77764
No 27
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.78 E-value=9.6e-20 Score=114.40 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=54.3
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
..+..++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||||+|+ ++++...
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~----k~kk~~~ 80 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRM----KLKKEIQ 80 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHTTC-
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhh----hhhhhcc
Confidence 3456778999999999999999999999999999999999999999999999999999 8887653
No 28
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=106.71 Aligned_cols=54 Identities=31% Similarity=0.417 Sum_probs=52.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 44 ~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.++.|+.||+.|+.+|+..|..++||+..++..||..+||++.+|++||||+|+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 55 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRY 55 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhc
Confidence 457899999999999999999999999999999999999999999999999999
No 29
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=109.85 Aligned_cols=61 Identities=28% Similarity=0.450 Sum_probs=56.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 44 ~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
+++.|+.||++|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+ ++++...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRA----KLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHH----HHhHhch
Confidence 367899999999999999999999999999999999999999999999999999 7777654
No 30
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.78 E-value=8.7e-20 Score=116.09 Aligned_cols=65 Identities=25% Similarity=0.438 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 39 DQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 39 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
+..+..++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||||+|+ ++++..
T Consensus 23 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~----k~kk~~ 87 (88)
T 2r5y_A 23 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRM----KWKKEH 87 (88)
T ss_dssp --------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----HHHTTC
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHH----HhHhhc
Confidence 44556788999999999999999999999999999999999999999999999999999 887753
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=1.4e-19 Score=110.08 Aligned_cols=61 Identities=31% Similarity=0.390 Sum_probs=56.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 44 ~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
.++.|+.||+.|+.+|+.+|..++||+..++..||..+||++.+|++||+|+|+ ++++...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~----k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRY----KMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhh----hhhhhhh
Confidence 467899999999999999999999999999999999999999999999999999 7776543
No 32
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=7.3e-20 Score=111.43 Aligned_cols=60 Identities=27% Similarity=0.458 Sum_probs=56.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 44 ~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
.++.|+.||++|+..|+..|..++||+..++..||..+||++.+|++||||+|+ ++++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~----k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRM----KWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHh----HHhHhc
Confidence 467899999999999999999999999999999999999999999999999999 777654
No 33
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.78 E-value=9e-20 Score=108.50 Aligned_cols=55 Identities=20% Similarity=0.390 Sum_probs=46.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 43 TPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 43 ~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
..++.|+.||.+|+.+|+.+|..++||+..++..||..+||++.+|++||+|+|+
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 58 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRM 58 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4667899999999999999999999999999999999999999999999999999
No 34
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=1.5e-19 Score=116.32 Aligned_cols=64 Identities=30% Similarity=0.498 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 39 DQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 39 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
..+...++.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||||+|+ ++++.
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~----k~kr~ 75 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRT----KWRRQ 75 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHH----HHHHH
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhh----hhhhh
Confidence 44556788999999999999999999999999999999999999999999999999999 77765
No 35
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=9.8e-20 Score=110.80 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=55.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 44 ~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
+++.|+.||+.|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+ ++++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~----k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRR----RHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHH----HHHHH
Confidence 567899999999999999999999999999999999999999999999999999 66654
No 36
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=110.87 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=53.3
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 46 KPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 46 r~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
..|..||.+|+.+|+..|..++||+..++..||..+||++.+|++||||+|+ ++++..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~----k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRK----KVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTT----HHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHH----HHHHhh
Confidence 4567899999999999999999999999999999999999999999999999 666543
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-19 Score=110.85 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 43 TPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 43 ~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
.+...|+.||.+|+.+|+.+|..++||+..++..||..+||++.+|++||+|+|+ ++++..
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~----k~kk~~ 67 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRY----HCRNLK 67 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHH----HSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhH----HHHHhc
Confidence 3445689999999999999999999999999999999999999999999999999 666654
No 38
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.77 E-value=4.3e-20 Score=112.31 Aligned_cols=62 Identities=27% Similarity=0.462 Sum_probs=57.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 43 TPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 43 ~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
..++.|+.||+.|+.+|+.+|..++||+..++..||..+||++.+|++||+|+|+ ++++...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA----KWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHH----HHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhH----HHHHHhh
Confidence 4678899999999999999999999999999999999999999999999999999 7776544
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.77 E-value=1.3e-19 Score=107.60 Aligned_cols=57 Identities=26% Similarity=0.530 Sum_probs=50.1
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 47 PRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 47 ~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+ ++++..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRA----KWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhh----hhHhhc
Confidence 578999999999999999999999999999999999999999999999999 877653
No 40
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=8.3e-19 Score=108.03 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=57.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 43 TPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 43 ~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
..++.|+.||++|+.+|+..|..++||+..++..||..+||++.+|++||||+|+ ++++...
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~----k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRY----NQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhH----HHHhhCc
Confidence 4567899999999999999999999999999999999999999999999999999 7777543
No 41
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=5.2e-19 Score=106.18 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=55.0
Q ss_pred CCCCCCCcCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 43 TPKKPRLVFTDLQRRTLQAIF---KETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 43 ~~rr~Rt~ft~~ql~~Le~~F---~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
.+++.|+.|+..|+.+|+.+| ..++||+..++..||..+||+..+|++||+|+|+ ++++
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~----r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI----RYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTT----TSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH----Hhcc
Confidence 456789999999999999999 8999999999999999999999999999999999 6654
No 42
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=3.7e-19 Score=109.26 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=54.6
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 45 KKPRLVFTDLQRRTLQAIFKE-TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 45 rr~Rt~ft~~ql~~Le~~F~~-~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
.+.|+.||.+|+.+|+..|.. ++||+..++..||..+||++.+|++||||+|+ ++++..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~----k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLA----EWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHH----HHhhhc
Confidence 357899999999999999996 99999999999999999999999999999999 777654
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=2.8e-19 Score=104.99 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=50.1
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
|.||++|+..|+..|..++||+..++..||..+||++.+|++||||+|+ ++++.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~----k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRT----KWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhh----hhccc
Confidence 6899999999999999999999999999999999999999999999999 77763
No 44
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=9.8e-19 Score=107.54 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=57.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKE---TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~---~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
.+..++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||+..+|++||+|+|+ ++++..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~----r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARR----RILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHh----hccccc
Confidence 4567788999999999999999976 99999999999999999999999999999999 776654
No 45
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.75 E-value=5.8e-19 Score=114.01 Aligned_cols=64 Identities=27% Similarity=0.342 Sum_probs=55.4
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
.....++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||||+|+ ++++..
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~----k~kk~~ 84 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRY----AWKNGN 84 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHTTTC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhh----Hhhhhc
Confidence 3455667899999999999999999999999999999999999999999999999999 887753
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=3.8e-19 Score=115.01 Aligned_cols=64 Identities=33% Similarity=0.314 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 39 DQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 39 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
+..+..++.|+.||..|+.+|+.+|..++||+..++..||..|||++.+|++||||+|+ ++++.
T Consensus 29 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~----k~kk~ 92 (97)
T 1b72_A 29 PGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRM----KQKKR 92 (97)
T ss_dssp --------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHHH
T ss_pred CCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhH----HHhHH
Confidence 33456788899999999999999999999999999999999999999999999999999 77664
No 47
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=109.80 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=56.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccccccccccccCCcccc
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKE---TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKW 103 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~---~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~ 103 (111)
....++.|+.|+.+|+.+|+.+|.. ++||+..++..||..+||+..||++||+|+|+|.+...
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 4567778999999999999999987 59999999999999999999999999999999554433
No 48
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=7.7e-19 Score=108.14 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 45 KKPRLVFTDLQRRTLQAIFKE-TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 45 rr~Rt~ft~~ql~~Le~~F~~-~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
.+.|+.||++|+.+|+.+|.. ++||+..++..||..+||++.+|++||||+|+ ++++..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~----k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLA----EWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH----HHHHhc
Confidence 357899999999999999994 99999999999999999999999999999999 776654
No 49
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.5e-18 Score=105.77 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=55.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKE-TKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~-~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
+.+.++|.||.|+.+|+.+|+.+|+. ++||+...+..||..+||++.+|++||||+|.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 34578899999999999999999999 99999999999999999999999999999997
No 50
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.1e-18 Score=108.70 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=52.6
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 47 PRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 47 ~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
.++.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+ ++++.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~----k~Kk~ 61 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRY----ALKHG 61 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH----HHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHH----HHHHH
Confidence 456899999999999999999999999999999999999999999999999 77764
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.74 E-value=1.6e-18 Score=106.57 Aligned_cols=60 Identities=25% Similarity=0.424 Sum_probs=55.5
Q ss_pred CCCCCcCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 45 KKPRLVFTDLQRRTLQAIF---KETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 45 rr~Rt~ft~~ql~~Le~~F---~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
++.|+.||..|+.+|+.+| ..++||+..++..||..+||+..+|++||+|+|+ ++++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~----r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI----RYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHh----hcccccc
Confidence 5789999999999999999 8999999999999999999999999999999999 6666543
No 52
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.7e-18 Score=111.51 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=57.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCcccccccccccccCCcccccc
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLG---------------LEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lg---------------L~~~qVkvWFqNrR~R~~~K~kr 105 (111)
....++.|+.|++.|+.+|+.+|..++||+..++..||..|| |++.+|++||||+|+ ++++
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~----k~kr 79 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRK----EIKR 79 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHH----HHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHH----HHHH
Confidence 456788999999999999999999999999999999999999 999999999999999 6655
Q ss_pred c
Q psy15969 106 D 106 (111)
Q Consensus 106 ~ 106 (111)
.
T Consensus 80 ~ 80 (95)
T 2cuf_A 80 R 80 (95)
T ss_dssp H
T ss_pred H
Confidence 3
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.72 E-value=3.3e-18 Score=101.41 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 48 RLVFTDLQRRTLQAIFKE---TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~---~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
++.||.+|+.+|+.+|.. ++||+..++..||..+||++.+|++||+|+|+ ++++
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~----r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRR----KEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHc----cccc
Confidence 679999999999999999 99999999999999999999999999999999 7765
No 54
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.70 E-value=5.6e-18 Score=116.95 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=54.9
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
.....++.|+.||..|+..|+.+|..++||+..++..||..+||++.+|++||||+|+ ++++.
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~----k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ----REKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhh----hhhcc
Confidence 3456678899999999999999999999999999999999999999999999999999 87764
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.70 E-value=5.6e-18 Score=107.24 Aligned_cols=58 Identities=26% Similarity=0.469 Sum_probs=53.9
Q ss_pred CCCCCcCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 45 KKPRLVFTDLQRRTLQAIF---KETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 45 rr~Rt~ft~~ql~~Le~~F---~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
++.|+.|+..|+.+|+.+| ..++||+..++..||..+||+..+|++||+|+|+ ++++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~----r~kk~ 62 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI----RYKKN 62 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH----Hhhhc
Confidence 5789999999999999999 8999999999999999999999999999999999 66654
No 56
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3.9e-18 Score=105.08 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=56.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCC
Q psy15969 43 TPKKPRLVFTDLQRRTLQAIF-KETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPP 109 (111)
Q Consensus 43 ~~rr~Rt~ft~~ql~~Le~~F-~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~ 109 (111)
...+.+..++.+|+.+||..| ..++||+..++..||..+||++.+|++||||+|+ ++++....
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~----k~r~~~~s 70 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRN----QDKPSGPS 70 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----HHSSCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhccc----CCCCCCCC
Confidence 344567788899999999999 9999999999999999999999999999999999 88876543
No 57
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.70 E-value=7.2e-18 Score=117.93 Aligned_cols=76 Identities=68% Similarity=1.026 Sum_probs=53.6
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 27 TCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 27 ~~~~~e~~~~~~~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
.|+..+.+. +.+.....++.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||||+|+ ++++.
T Consensus 81 ~~~~~~~~~-~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~----r~k~~ 155 (164)
T 2d5v_A 81 ACKRKEQEH-GKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARR----RSLDK 155 (164)
T ss_dssp --------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----TSSCC
T ss_pred ccccccccc-CCcCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhc----ccccc
Confidence 355544443 3445667788999999999999999999999999999999999999999999999999999 55554
Q ss_pred C
Q psy15969 107 D 107 (111)
Q Consensus 107 ~ 107 (111)
.
T Consensus 156 ~ 156 (164)
T 2d5v_A 156 W 156 (164)
T ss_dssp -
T ss_pred C
Confidence 3
No 58
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.7e-17 Score=106.23 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
.||.+|+.+|+..|..++||+..++..||..|||++.+|+|||||+|+ +|++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~----k~rk~ 69 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKK----SKALK 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH----HHHSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccch----HHHHH
Confidence 899999999999999999999999999999999999999999999999 66654
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.70 E-value=7e-18 Score=117.90 Aligned_cols=62 Identities=31% Similarity=0.357 Sum_probs=54.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
....++.|+.||..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+ ++++.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~----k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQ----KEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhh----hhhcc
Confidence 346788999999999999999999999999999999999999999999999999999 88774
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=104.58 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=51.3
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
...||.+|+.+|+..|..++||+..++..||..+||++.+|++||||+|+ ++++..
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~----k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRK----LRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHTSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHH----HHHHHh
Confidence 34599999999999999999999999999999999999999999999999 665543
No 61
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=101.87 Aligned_cols=58 Identities=26% Similarity=0.233 Sum_probs=53.6
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 47 PRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 47 ~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
.-+.+|+.|+..|+..|..++||+..++..||..+||++.+|++||||+|+ ++++...
T Consensus 7 ~~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRa----k~kr~~~ 64 (69)
T 2l9r_A 7 HHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRY----KTKRKQL 64 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----HSCCSSS
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhh----hhhhhhh
Confidence 346789999999999999999999999999999999999999999999999 8877654
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.69 E-value=1.3e-17 Score=105.76 Aligned_cols=56 Identities=21% Similarity=0.225 Sum_probs=53.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 42 STPKKPRLVFTDLQRRTLQAIFKE---TKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 42 ~~~rr~Rt~ft~~ql~~Le~~F~~---~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
...++.|+.|+.+|+.+|+.+|.. ++||+..++..||..+||+..+|++||+|+|+
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~ 83 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRR 83 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 445667999999999999999999 99999999999999999999999999999999
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.69 E-value=1e-17 Score=117.64 Aligned_cols=65 Identities=26% Similarity=0.309 Sum_probs=52.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCC
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPP 109 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~ 109 (111)
....++.|+.||..|+..|+.+|..++||+..++..||..+||++.+|++||||+|+ ++++...+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~----k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQ----KEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhH----HHhhccCC
Confidence 456778999999999999999999999999999999999999999999999999999 88887653
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.69 E-value=1.9e-17 Score=104.33 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=52.9
Q ss_pred CCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccC
Q psy15969 46 KPRLVFTDLQRRTLQAIFKE---TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDD 107 (111)
Q Consensus 46 r~Rt~ft~~ql~~Le~~F~~---~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~ 107 (111)
+.++.|+.+|+.+|+.+|.. ++||+..++..||..+||+..+|++||+|+|+ ++++..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~----r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRA----KEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHc----cccccc
Confidence 34667999999999999999 99999999999999999999999999999999 776653
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.2e-17 Score=98.91 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=50.8
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCC
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDP 108 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~ 108 (111)
..++..|+..|+.+|..++||+..++..||..+||++.+|++||||+|+ +.++..+
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRa----k~~~~~~ 63 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQA----GQISVQS 63 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----TCSCSSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccC----CCCCCCC
Confidence 3566899999999999999999999999999999999999999999999 7666443
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=114.19 Aligned_cols=62 Identities=26% Similarity=0.404 Sum_probs=57.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
.....++.|+.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||+|+ ++++
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~----k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQ----TLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH----HHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHh----ccCC
Confidence 3456778999999999999999999999999999999999999999999999999999 7765
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.67 E-value=1.6e-17 Score=100.70 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 51 FTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 51 ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
-|.+|+..|+..|..++||+..++.+||..+||+..+|++||||+|+ +|++
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~----k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRY----RCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchh----hhhc
Confidence 46899999999999999999999999999999999999999999999 8775
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.67 E-value=2.7e-17 Score=107.06 Aligned_cols=60 Identities=25% Similarity=0.447 Sum_probs=50.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCcccccccccccccCC
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQ------------------LG---LEPTTVGNFFMNARRRS 99 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~------------------lg---L~~~qVkvWFqNrR~R~ 99 (111)
....++.|+.|++.|+.+|+..|..++||+..++++||.. || |++.+|++||||+|++.
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4566789999999999999999999999999999999999 88 99999999999999943
Q ss_pred c
Q psy15969 100 M 100 (111)
Q Consensus 100 ~ 100 (111)
+
T Consensus 86 k 86 (99)
T 1lfb_A 86 A 86 (99)
T ss_dssp S
T ss_pred H
Confidence 3
No 69
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-17 Score=106.58 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=53.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCccccccccccccc
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQL---------------------GLEPTTVGNFFMNARR 97 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~l---------------------gL~~~qVkvWFqNrR~ 97 (111)
....++.|+.|++.|+.+|+.+|..++||+..++++||..| +|++.+|++||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 34578899999999999999999999999999999999999 7899999999999999
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=3e-17 Score=99.17 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=48.9
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccccCCCC
Q psy15969 53 DLQRRTLQAIF-KETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPPK 110 (111)
Q Consensus 53 ~~ql~~Le~~F-~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~~~~~ 110 (111)
+.++.+||.+| ..+.||+..++.+||..|||++.||++||||||+ ++++..+++
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~----k~k~~~~~~ 63 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRN----QEKPSGPSS 63 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHH----HSCCSSCCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHh----ccCCCCCCC
Confidence 35799999999 5799999999999999999999999999999999 888766554
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.64 E-value=4.3e-17 Score=113.40 Aligned_cols=60 Identities=33% Similarity=0.469 Sum_probs=57.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccccCCcccccc
Q psy15969 42 STPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKD 105 (111)
Q Consensus 42 ~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr 105 (111)
..+++.|+.|+..|+..|+.+|..++||+..++..||..+||++.+|++||||+|+ ++++
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~----k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQ----KGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH----HHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccc----cccC
Confidence 46778899999999999999999999999999999999999999999999999999 8776
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=3.7e-16 Score=94.84 Aligned_cols=54 Identities=28% Similarity=0.434 Sum_probs=48.4
Q ss_pred CcCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCcccccccccccccCCccccccc
Q psy15969 49 LVFTDLQRRTLQAIFK---ETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~---~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~~K~kr~ 106 (111)
..|+.+|+.+|+.+|. .++||+..++..||..+||+..||++||+|+|+ ++++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~----r~kk~ 59 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARR----RIVQP 59 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHHSC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHH----HHhHH
Confidence 3799999999999999 999999999999999999999999999999999 66554
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=91.34 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 53 DLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 53 ~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.+|+..|+.+|..|++|+..++..||..+||+...|++||||+|+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 478999999999999999999999999999999999999999998
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.51 E-value=2.1e-15 Score=108.51 Aligned_cols=57 Identities=23% Similarity=0.403 Sum_probs=51.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccccccccccccc
Q psy15969 41 SSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLG---------------------LEPTTVGNFFMNARR 97 (111)
Q Consensus 41 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lg---------------------L~~~qVkvWFqNrR~ 97 (111)
....++.|+.|++.|+.+|+..|..++||+..++++||..|| |++.+|++||||||+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 356688999999999999999999999999999999999999 999999999999999
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=105.72 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=52.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccccccccccccc
Q psy15969 40 QSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLG---------------------LEPTTVGNFFMNARR 97 (111)
Q Consensus 40 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lg---------------------L~~~qVkvWFqNrR~ 97 (111)
.....++.|+.|++.|+.+|+.+|..++||+..++++||..|| |++.+|++||+|+|+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 3456788999999999999999999999999999999999987 889999999999998
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-14 Score=92.73 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=48.2
Q ss_pred CcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcccccccccccccCCc
Q psy15969 49 LVFTDLQRRTLQAIFKE---TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSM 100 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~---~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~R~~ 100 (111)
..|+..++.+|..+|.. ++||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~k 64 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLL 64 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhh
Confidence 46899999999999987 89999999999999999999999999999999543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.31 E-value=7.8e-13 Score=101.39 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=49.0
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 47 PRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 47 ~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.++.|+..|+..|+..|..++||+..++.+||..+||++.||++||||||+
T Consensus 368 ~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~ 418 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRM 418 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred hhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhccc
Confidence 356899999999999999999999999999999999999999999999999
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.30 E-value=7.7e-08 Score=51.73 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=15.1
Q ss_pred ccccccccccccCCccccccc
Q psy15969 86 TTVGNFFMNARRRSMDKWKDD 106 (111)
Q Consensus 86 ~qVkvWFqNrR~R~~~K~kr~ 106 (111)
+||+|||||+|+ +|++.
T Consensus 1 rQVkIWFQNRRa----K~Kk~ 17 (37)
T 2nzz_A 1 RQIKIWFQNRRM----KWKKR 17 (37)
T ss_dssp CCTTTTTTCSHH----HHTSS
T ss_pred CCceeccHHHHH----HHHHH
Confidence 489999999999 88875
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.23 E-value=0.0023 Score=38.56 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 51 FTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 51 ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
.++.-..+|+.+|.....+.......|+....|+..+|+.||-.+
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 334456899999999999999999999999999999999999654
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=88.94 E-value=0.28 Score=27.45 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccc
Q psy15969 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFM 93 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFq 93 (111)
+..||+++...+..++... .+.......+|..+|++..+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4579998877765555433 22122366899999999999999975
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=82.25 E-value=1.8 Score=27.34 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=36.7
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 47 PRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 47 ~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.|..||.++...+-..+..++.++. ..||..+|++...|..|..+...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 4678999998887777755555543 35789999999999999876543
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=81.29 E-value=1.8 Score=21.90 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqN 94 (111)
.+++.+...+...+... + ...+||..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 56777765555555433 2 2567899999999999999864
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=78.15 E-value=3.3 Score=24.67 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=31.7
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy15969 46 KPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 46 r~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqN 94 (111)
+.+..|+.++.......+.. .. ....||..+|++...|..|...
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 35668999886555555543 22 2567899999999999999853
No 84
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=76.90 E-value=5 Score=26.72 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=29.3
Q ss_pred CcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCc
Q psy15969 49 LVFTDLQRRTLQAIFKE-----TKRPSKEMQVTIARQLGLEP 85 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgL~~ 85 (111)
..|+..++..|..+|.. +.+.+..+...+...+|+..
T Consensus 49 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~ 90 (196)
T 3dtp_E 49 AMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLC 90 (196)
T ss_dssp CSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCC
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCC
Confidence 35889999999999864 46888998888888777654
No 85
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=75.12 E-value=5.3 Score=26.11 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=39.4
Q ss_pred CCCCCcCCHHHHHHHHHHH-hhCCCCCHHHHHHHH-HHh--CCCccccccccccc
Q psy15969 45 KKPRLVFTDLQRRTLQAIF-KETKRPSKEMQVTIA-RQL--GLEPTTVGNFFMNA 95 (111)
Q Consensus 45 rr~Rt~ft~~ql~~Le~~F-~~~~~ps~~~r~~LA-~~l--gL~~~qVkvWFqNr 95 (111)
.+.|..+|.+|...|..++ +.++-.+..+....| ..+ |++..+|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678999999999999999 677777666555533 267 77888899998764
No 86
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=75.01 E-value=3.3 Score=24.87 Aligned_cols=43 Identities=19% Similarity=0.388 Sum_probs=30.8
Q ss_pred CCcCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCCcccccccccc
Q psy15969 48 RLVFTDLQRRTLQAIFKET-KRPSKEMQVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~~-~~ps~~~r~~LA~~lgL~~~qVkvWFqN 94 (111)
+..||+++....-..+... .. ....+|..+|++..+|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3578888876655555322 22 3668899999999999999854
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=72.23 E-value=1.5 Score=22.70 Aligned_cols=41 Identities=10% Similarity=0.254 Sum_probs=28.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
.+++++...+...+... . ...+||..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 45555655555555433 2 35678999999999999998643
No 88
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=68.85 E-value=5.6 Score=24.27 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=31.9
Q ss_pred CCcCCHHHHHHHHHHH-hhC-CCCCH-HHHHHHHHHhCCCcccccccccc
Q psy15969 48 RLVFTDLQRRTLQAIF-KET-KRPSK-EMQVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F-~~~-~~ps~-~~r~~LA~~lgL~~~qVkvWFqN 94 (111)
+..||+++....-..+ ... .+++. .....+|..+|++..+|..|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 3478888875544443 322 23332 45678999999999999999754
No 89
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=66.74 E-value=0.051 Score=36.98 Aligned_cols=30 Identities=3% Similarity=-0.121 Sum_probs=21.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCH
Q psy15969 42 STPKKPRLVFTDLQRRTLQAIFKETKRPSK 71 (111)
Q Consensus 42 ~~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~ 71 (111)
...++.|+.|+..|+..|+..|+.+++|+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999999863
No 90
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=65.32 E-value=3 Score=23.14 Aligned_cols=43 Identities=21% Similarity=0.013 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.+++.+..+|...|.... ...++|..+|++...|..+...-+.
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 477888888887764332 3568899999999999998876555
No 91
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=64.22 E-value=2.8 Score=25.10 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 51 FTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 51 ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
+++.+..+|...|... ....+||..+|++...|..+...-+.
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555555555544322 24578899999999999998876655
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=63.94 E-value=4.5 Score=25.02 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=33.7
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
...+|+.+..+|..++.-- ...+||..+|++...|..+..+-+.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3568999999998765322 2478899999999999998876443
No 93
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=63.68 E-value=5.1 Score=21.30 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=27.1
Q ss_pred cCC--HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccc
Q psy15969 50 VFT--DLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFM 93 (111)
Q Consensus 50 ~ft--~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFq 93 (111)
.++ +.+...+...+.. .+ ...+||..+|++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 6666555555543 32 356789999999999999875
No 94
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=59.62 E-value=7.6 Score=21.99 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.+++.+..+|...|..... ......+||..+|++...|..+...-+.
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5788899999888852110 0123568899999999999998866554
No 95
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=58.60 E-value=27 Score=22.37 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcc
Q psy15969 48 RLVFTDLQRRTLQAIFKE-----TKRPSKEMQVTIARQLGLEPT 86 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgL~~~ 86 (111)
+..+|.+|+..|..+|.. +.+.+..+...+...+|+...
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 467999999999999963 568999999888888887653
No 96
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=56.73 E-value=5.3 Score=22.33 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.+++.+..+|...|..+.+. .....++|..+|++...|..+...-+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47888889998887432111 123577899999999999998876665
No 97
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=55.65 E-value=11 Score=23.45 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=31.3
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
..++.++...+...+... + ....+|..+|++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 467888877776666533 2 25678999999999999999643
No 98
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.62 E-value=7.6 Score=24.49 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.+++.+..+|...|.... ...++|..+|++...|..|...-+.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEK 64 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 477888888887765442 3578899999999999999876554
No 99
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.92 E-value=9.4 Score=21.17 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=32.5
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
..+++.+..+|..++ ..+ ...++|..+|++...|..++.+-+.
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 468899999998842 333 3567899999999999988876444
No 100
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=53.08 E-value=6.1 Score=23.84 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=33.0
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
..+++.+..+|..++.. + ...+||..+|++...|..+..+-+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG--L----TNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp -CCCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36889999999886332 2 2478899999999999998876655
No 101
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.39 E-value=8.5 Score=22.50 Aligned_cols=45 Identities=22% Similarity=0.159 Sum_probs=34.3
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 47 PRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 47 ~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.-..+++.+..+|..++ ..+ ...+||..+|++...|..+..+-+.
T Consensus 18 ~~~~Lt~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 18 DVNQLTPRERDILKLIA--QGL----PNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp CGGGSCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34579999999998843 222 4678899999999999998876555
No 102
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=49.49 E-value=8.9 Score=22.61 Aligned_cols=47 Identities=6% Similarity=0.086 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.+++.+..+|...|-...- ......+||..+|++...|..+...-+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678888888888752100 0123567899999999999998876555
No 103
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=49.18 E-value=12 Score=21.92 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKE-----TKRPSKEMQVTIARQLGLEPTTVGNFFM 93 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgL~~~qVkvWFq 93 (111)
.+++++...+...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678888888888863 4577888888877778888766665553
No 104
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=49.08 E-value=10 Score=24.71 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
...+|..+|++..++..|+...|.
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 566899999999999999975554
No 105
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=48.05 E-value=15 Score=22.19 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqN 94 (111)
.++.++...+...+. ..+ + ...+|..+|++...|..|+..
T Consensus 17 ~~s~~~r~~i~~~~~-~g~-s---~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI-R---PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC-C---HHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 578877766666665 332 2 456899999999999999864
No 106
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=47.57 E-value=18 Score=20.33 Aligned_cols=41 Identities=7% Similarity=-0.057 Sum_probs=30.5
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+++..+..+......+ ..+||..+|++...|..|-.+.+
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 357888887777654332 46789999999999999987643
No 107
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=47.38 E-value=6.2 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCcccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFF 92 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWF 92 (111)
...||..+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 108
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=47.12 E-value=7.1 Score=24.69 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCccccccccccccc
Q psy15969 73 MQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 73 ~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
...+||..+|++...|..+...-+.
T Consensus 126 s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 126 SYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5678999999999999998876555
No 109
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=45.18 E-value=12 Score=23.42 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.+++.+..+|...|.... ...++|..+|++...|..+...-+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGD 67 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467777777777654332 4578899999999999998876554
No 110
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=45.07 E-value=21 Score=21.35 Aligned_cols=45 Identities=20% Similarity=0.092 Sum_probs=33.0
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 47 PRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 47 ~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.-..+|+.+..+|..++. .+ ...+||..||++...|.....+-..
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345799999999988762 22 3677899999999999987765443
No 111
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=44.65 E-value=10 Score=22.05 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=36.2
Q ss_pred CCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccccccccc
Q psy15969 48 RLVFTDLQRRTLQAIFKE-----TKRPSKEMQVTIARQLGLEPTTVGNFFM 93 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgL~~~qVkvWFq 93 (111)
-..++..++..|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 346788889999998853 5688888888888888988877877774
No 112
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.75 E-value=9.4 Score=21.58 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 51 FTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 51 ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
+++.+..+|..++ ..+ ...++|..+|++...|..++.+-+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6777777777642 222 3468899999999999988876555
No 113
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=42.93 E-value=7.7 Score=20.76 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
...||..+|++...|..|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987653
No 114
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=42.11 E-value=7.4 Score=22.20 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46799999999999999997654
No 115
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=41.81 E-value=22 Score=23.31 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcc
Q psy15969 48 RLVFTDLQRRTLQAIFKE-----TKRPSKEMQVTIARQLGLEPT 86 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgL~~~ 86 (111)
.+.||++|+..|..+|.. +.+.+..+...+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 467899999999999863 568888888888888887653
No 116
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=41.79 E-value=8.5 Score=20.69 Aligned_cols=23 Identities=9% Similarity=0.312 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
...||..+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56789999999999999987643
No 117
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=41.54 E-value=16 Score=23.83 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCcccccccccc
Q psy15969 51 FTDLQRRTLQAIFKE----TKRPSKEMQVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 51 ft~~ql~~Le~~F~~----~~~ps~~~r~~LA~~lgL~~~qVkvWFqN 94 (111)
+|..++.+|..++.. +.+|+.. .||..+|++...|...+++
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~ 74 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRM 74 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHH
Confidence 567777777777653 5667664 6899999999988877654
No 118
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=41.18 E-value=7.3 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCcccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqN 94 (111)
...||..||++...|..|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999865
No 119
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=41.15 E-value=9.6 Score=24.72 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 55 QRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 55 ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
-+..-...|....| . .....||...|++...|-.+|.|+
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK 58 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTR 58 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCH
Confidence 35555666888888 5 789999999999999999999875
No 120
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=40.45 E-value=8.8 Score=20.89 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
...||..+|++...|..|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467899999999999999977543
No 121
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=40.17 E-value=23 Score=22.17 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|-.+.+
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35788889999999999987654
No 122
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=38.66 E-value=28 Score=22.42 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHHhh-------CCCCCHHHHHHHHHHhCCCcc
Q psy15969 50 VFTDLQRRTLQAIFKE-------TKRPSKEMQVTIARQLGLEPT 86 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~-------~~~ps~~~r~~LA~~lgL~~~ 86 (111)
.+|++|+..|..+|.. +.+.+..+...+...+|+.+.
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCC
Confidence 5789999999998752 357888888888888887543
No 123
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=38.39 E-value=59 Score=18.93 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=31.4
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh-CCCccccccccc
Q psy15969 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQL-GLEPTTVGNFFM 93 (111)
Q Consensus 45 rr~Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~l-gL~~~qVkvWFq 93 (111)
......+|.++-..|+.+...-+.-+...=..||..+ |=+..+|..=|.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHH
Confidence 3445689999999999887764433344445577766 455566554443
No 124
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=37.87 E-value=16 Score=21.61 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCCccccccccc
Q psy15969 51 FTDLQRRTLQAIFK-----ETKRPSKEMQVTIARQLGLEPTTVGNFFM 93 (111)
Q Consensus 51 ft~~ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgL~~~qVkvWFq 93 (111)
+++.+...|...|. .+.+.+..+...+...+|++...|..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56778888888874 24678888888777777888777666553
No 125
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=37.82 E-value=12 Score=24.47 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCccccccccccccc
Q psy15969 73 MQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 73 ~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
...+||..+|++...|..+...-+.
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRARE 182 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3568899999999999998876655
No 126
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=37.53 E-value=10 Score=22.43 Aligned_cols=43 Identities=21% Similarity=0.093 Sum_probs=32.6
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
..+++.+..+|..++. .+ ...+||..+|++...|..+..+-+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4688899999887543 22 2457899999999999998876655
No 127
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=36.80 E-value=15 Score=23.93 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+..-...|....| . .....||...|++...|-.+|.|+
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK 56 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTK 56 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCH
Confidence 4444556888887 5 678899999999999999999875
No 128
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=36.50 E-value=11 Score=20.32 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
..+||..+|++...|..|..+...
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999876543
No 129
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=36.35 E-value=17 Score=25.23 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=31.8
Q ss_pred CCCcCCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 47 PRLVFTDLQ-RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 47 ~Rt~ft~~q-l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
.+...+.+. +..-...|....|-.. ....||..+|++...|-.+|.|+
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~~K 73 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETF-SVRKLAASLGTDSSSLYRHFRNK 73 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCC-CHHHHHHHTTSCHHHHHHHTSSH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCcCHHHHHHHcCCH
Confidence 344555543 3444555766665443 46778999999999999999875
No 130
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=36.24 E-value=12 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNr 95 (111)
..++|..||++...|..|..+.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHCC
Confidence 4578999999999999998653
No 131
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=35.93 E-value=14 Score=24.96 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 51 FTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 51 ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
+++.+..+|...|... ....+||..+|++...|..+...-+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALE 229 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555555555554322 24568899999999999988876555
No 132
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=35.64 E-value=12 Score=20.74 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
...||..+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46789999999999999987643
No 133
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=35.39 E-value=12 Score=20.65 Aligned_cols=23 Identities=9% Similarity=0.312 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987643
No 134
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=34.02 E-value=13 Score=20.60 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
...||..+|++...|..|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987754
No 135
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=33.00 E-value=92 Score=19.59 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=29.4
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccc
Q psy15969 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTT 87 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~q 87 (111)
...||.+++..|...+.....+.......|+..+||....
T Consensus 4 ~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E 43 (170)
T 1aih_A 4 LAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSE 43 (170)
T ss_dssp CCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHH
T ss_pred cccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHH
Confidence 4578999999999988766656555666777777765443
No 136
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=32.50 E-value=39 Score=21.81 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=30.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-.. ....||...|++...|-.+|.|.
T Consensus 20 l~aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 20 IERAAAMFARQGYSET-SIGDIARACECSKSRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHHHTCTTTS-CHHHHHHHTTCCGGGGTTTCSCH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCcCeeeeeeCCH
Confidence 4455556888777544 47788999999999999999874
No 137
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=31.91 E-value=41 Score=22.99 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccc
Q psy15969 54 LQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTV 88 (111)
Q Consensus 54 ~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qV 88 (111)
..+..|...=+...|.+......+|..|||+...|
T Consensus 26 ~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 26 AIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp GHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHH
Confidence 34555555545568999999999999999998776
No 138
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=31.14 E-value=15 Score=21.53 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|..+.+
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46789999999999999987643
No 139
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=29.99 E-value=75 Score=17.63 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHhCCCcccccccc
Q psy15969 67 KRPSKEMQVTIARQLGLEPTTVGNFF 92 (111)
Q Consensus 67 ~~ps~~~r~~LA~~lgL~~~qVkvWF 92 (111)
..|+......||..+|++...+--|+
T Consensus 50 ~~~~~~~~~~ia~~l~v~~~~l~~~l 75 (80)
T 3kz3_A 50 NALNAYNAALLAKILKVSVEEFSPSI 75 (80)
T ss_dssp SCCCHHHHHHHHHHHTSCGGGTCHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHhHHH
Confidence 34666666667777776666555444
No 140
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=29.77 E-value=92 Score=18.55 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCc
Q psy15969 51 FTDLQRRTLQAIFKE-----TKRPSKEMQVTIARQLGLEP 85 (111)
Q Consensus 51 ft~~ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgL~~ 85 (111)
||+.++..|...|.. +.+.+..+...+...+|+..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 40 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNP 40 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCC
Confidence 678899999999863 46788888888877887644
No 141
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=29.18 E-value=18 Score=20.80 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|..+.+
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997754
No 142
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=28.79 E-value=14 Score=19.76 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
..++|..+|++...|..+..+-+.
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 357899999999999988876544
No 143
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=28.53 E-value=59 Score=19.87 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=32.2
Q ss_pred CcCCHHHHHHHHHHHhh------CCCCCHHHHHHHHHHhCC--Cccccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKE------TKRPSKEMQVTIARQLGL--EPTTVGNFFM 93 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~------~~~ps~~~r~~LA~~lgL--~~~qVkvWFq 93 (111)
..+++.++..|...|.. +.+.+..+...+...+|+ +...|..+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 46889999999998853 457888888888777775 3344555553
No 144
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=28.42 E-value=12 Score=25.16 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 51 FTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 51 ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
+++.+..+|...| .......+||..+|++...|..++..-+.
T Consensus 199 L~~~~r~vl~l~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 199 LDERERLIVYLRY-----YKDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp -----------------------------------------------
T ss_pred CCHHHHHHHHHHH-----hcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444444433 23346678999999999999998875544
No 145
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=28.40 E-value=94 Score=18.26 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHhCCCccc
Q psy15969 67 KRPSKEMQVTIARQLGLEPTT 87 (111)
Q Consensus 67 ~~ps~~~r~~LA~~lgL~~~q 87 (111)
..|+......||..||++...
T Consensus 61 ~~~s~~~l~kIa~~L~v~~~~ 81 (88)
T 3t76_A 61 ENVSLTVLLAICEYLNCDFGD 81 (88)
T ss_dssp CCCCHHHHHHHHHHHTCCGGG
T ss_pred CCcCHHHHHHHHHHHCcCHHH
Confidence 345666666666666665544
No 146
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=28.23 E-value=21 Score=21.24 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCcccccccccc
Q psy15969 72 EMQVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 72 ~~r~~LA~~lgL~~~qVkvWFqN 94 (111)
.....||..+|++...+...|..
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 35678899999999888877753
No 147
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=28.10 E-value=18 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
...||..+|++...|..|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56789999999999999997653
No 148
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=28.06 E-value=19 Score=20.44 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|..+.+
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999987643
No 149
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=28.02 E-value=14 Score=23.93 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+..-...|....| . .....||...|++...|-.+|.|+
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK 59 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSR 59 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCH
Confidence 4444556888888 5 578999999999999999999874
No 150
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=27.84 E-value=21 Score=20.65 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCcccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqN 94 (111)
..+||..+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 566899999999999999764
No 151
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=27.69 E-value=37 Score=21.82 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 55 QRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 55 ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
-+......|....|-. .....||...|++...+-.+|.|.
T Consensus 18 Il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK 57 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQ-ISVSDIMQTAKIRRQTFYNYFQNQ 57 (195)
T ss_dssp HHHHHHHHHHHSCGGG-CCHHHHHHHHTSCGGGGGGTCSSH
T ss_pred HHHHHHHHHHhCCCCe-eCHHHHHHHhCCCHHHHHHHcCCH
Confidence 3455556677777643 346778999999999999999875
No 152
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=27.68 E-value=39 Score=21.54 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 55 QRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 55 ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
-+......|....|-. .....||...|++...|-.+|.|+
T Consensus 21 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK 60 (211)
T 3him_A 21 IRAAAIEVFAAKGYGA-TTTREIAASLDMSPGAVYPHYKTK 60 (211)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHTTCCTTSSTTTCSSH
T ss_pred HHHHHHHHHHHcCCCc-CCHHHHHHHhCCCcChhhhcCCCH
Confidence 3444555677777653 347788999999999999999875
No 153
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=27.68 E-value=27 Score=21.69 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGN 90 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkv 90 (111)
.+|..+...|..++............+||..+|++...|..
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~ 50 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFE 50 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHH
Confidence 57888888888776532111123456788999998877654
No 154
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=27.52 E-value=19 Score=20.16 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999987654
No 155
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.38 E-value=1.2e+02 Score=19.20 Aligned_cols=50 Identities=4% Similarity=-0.188 Sum_probs=33.4
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh-------CCCccccccccccccc
Q psy15969 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQL-------GLEPTTVGNFFMNARR 97 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~l-------gL~~~qVkvWFqNrR~ 97 (111)
...+++++...|...+..++..+..+........ .++..+|..|+...+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 3467777888888888777767766554432222 3677889999876544
No 156
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=27.31 E-value=93 Score=18.43 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCcCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--Cccccccccc
Q psy15969 48 RLVFTDLQRRTLQAIFK-----ETKRPSKEMQVTIARQLGL--EPTTVGNFFM 93 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgL--~~~qVkvWFq 93 (111)
...++.+++..|..+|. .+.+.+..+...+...+|+ +...|..+|.
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45788999999999986 3578999999998888885 4556666664
No 157
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=27.15 E-value=23 Score=22.57 Aligned_cols=39 Identities=8% Similarity=0.029 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 55 QRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 55 ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
-+..-...|....|- .....||...|++...|-.+|.|+
T Consensus 14 Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK 52 (190)
T 3jsj_A 14 LLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESK 52 (190)
T ss_dssp HHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCH
T ss_pred HHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCH
Confidence 345555668888777 668889999999999999999875
No 158
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=27.14 E-value=50 Score=21.24 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-.. ....||...|++...|-.+|.|+
T Consensus 25 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK 63 (216)
T 3qqa_A 25 KAVALELFLTKGYQET-SLSDIIKLSGGSYSNIYDGFKSK 63 (216)
T ss_dssp HHHHHHHHHHTCTTTC-CHHHHHHHHTTSCCSSSCSCCSH
T ss_pred HHHHHHHHHHcChhhC-CHHHHHHHhCCCHHHHHHhcCCH
Confidence 3444455777766544 46778999999999999999875
No 159
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=27.08 E-value=59 Score=18.74 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFF 92 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWF 92 (111)
.+++.+..+|...+..+..+ ...+||..+|++...|....
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~---t~~ela~~l~is~~tv~~~l 57 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPI---TSEELADIFKLSKTTVENSL 57 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCE---EHHHHHHHHTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCC---CHHHHHHHHCcCHHHHHHHH
Confidence 46788888888777644433 35678889999887776443
No 160
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=26.78 E-value=48 Score=20.83 Aligned_cols=39 Identities=10% Similarity=-0.023 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+..-...|....|-.. ....||...|++...|-..|.|+
T Consensus 13 l~aA~~l~~~~G~~~~-s~~~IA~~agvs~~tly~~F~sK 51 (180)
T 2fd5_A 13 LGAATQALLERGAVEP-SVGEVMGAAGLTVGGFYAHFQSK 51 (180)
T ss_dssp HHHHHHHHHHHTTTSC-CHHHHHHHTTCCGGGGGGTCSCH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCccHHHHHCCCH
Confidence 3444555777776543 46788999999999999999875
No 161
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=26.32 E-value=21 Score=20.16 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|-.+.+
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999987653
No 162
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=26.22 E-value=22 Score=19.88 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNr 95 (111)
..+||..+|++...|..|..+.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4678999999999999988764
No 163
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=25.74 E-value=16 Score=21.27 Aligned_cols=20 Identities=30% Similarity=0.307 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFM 93 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFq 93 (111)
+.++|..+|++...|..|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45788999999999999965
No 164
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.69 E-value=57 Score=22.38 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=33.5
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
...+|+.+..+|.-.+. .+ .-.+||..+|++...|+....|-+.
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34689999999877543 22 3467899999999999998877554
No 165
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=25.64 E-value=34 Score=21.53 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 55 QRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 55 ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
-+......|....|-.. ....||...|++...+-.+|.|+
T Consensus 14 Il~aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK 53 (195)
T 3ppb_A 14 ILETALQLFVSQGFHGT-STATIAREAGVATGTLFHHFPSK 53 (195)
T ss_dssp HHHHHHHHHHHTCSTTS-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhcCcccC-CHHHHHHHhCCChhHHHHHcCCH
Confidence 34555556777776544 47788999999999999999875
No 166
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=25.62 E-value=1.1e+02 Score=18.13 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCCc--ccccccc
Q psy15969 51 FTDLQRRTLQAIFK-----ETKRPSKEMQVTIARQLGLEP--TTVGNFF 92 (111)
Q Consensus 51 ft~~ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgL~~--~qVkvWF 92 (111)
+|+.++..|...|. .+.+.+..+...+...+|+.. ..|...|
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~ 50 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKIL 50 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 56777788888774 245677777777666666543 3344444
No 167
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=25.33 E-value=31 Score=21.91 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-.. ....||...|++...|-.+|.|+
T Consensus 13 l~aa~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK 51 (199)
T 3qbm_A 13 VAQAAALFNVSGYAGT-AISDIMAATGLEKGGIYRHFESK 51 (199)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHHhCcCcC-CHHHHHHHhCCCccHHHHhCCCH
Confidence 3444455776665543 46778999999999999999875
No 168
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=25.22 E-value=73 Score=19.35 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=31.7
Q ss_pred CcCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCcccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKE----TKRPSKEMQVTIARQLGLEPTTVGNFF 92 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~----~~~ps~~~r~~LA~~lgL~~~qVkvWF 92 (111)
..+++++...+...|.. +.+.+..+...+...+|++...|...|
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 35678888888888863 457778877777777788776665444
No 169
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=24.97 E-value=33 Score=21.70 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-.. ....||...|++...|-.+|.|+
T Consensus 16 l~aa~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK 54 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGV-GLNEILQSAGVPKGSFYHYFKSK 54 (197)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHTTTCSCH
T ss_pred HHHHHHHHHHCCcccC-CHHHHHHHhCCChhhHHHHcCCH
Confidence 4555556777776543 36778999999999999999875
No 170
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=24.70 E-value=22 Score=19.22 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
...+|..+|++...|..|..+.+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~~ 38 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAGR 38 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999986543
No 171
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.51 E-value=27 Score=20.36 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|..+.+
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987654
No 172
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=24.31 E-value=48 Score=21.34 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+..-...|....|-. .....||...|++...|-..|.|+
T Consensus 19 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK 57 (217)
T 3nrg_A 19 IDVLLDEFAQNDYDS-VSINRITERAGIAKGSFYQYFADK 57 (217)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCTTGGGGTCSSH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHcCCH
Confidence 344445577776643 347788999999999999999875
No 173
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=23.94 E-value=38 Score=22.00 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+..-...|....|-.. ....||...|++...|-.+|.|+
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2xdn_A 17 IEAAERAFYKRGVART-TLADIAELAGVTRGAIYWHFNNK 55 (210)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCTTHHHHHCSSH
T ss_pred HHHHHHHHHHcCcccC-cHHHHHHHHCCChHHHHHHhCCH
Confidence 3444556777776544 46778999999999999999875
No 174
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=23.92 E-value=26 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|-.+.+
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46789999999999999987653
No 175
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.41 E-value=18 Score=21.16 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccc
Q psy15969 51 FTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFF 92 (111)
Q Consensus 51 ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWF 92 (111)
+++++-..+..++..+.--+.....+||..+|++...|....
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 344443334455555552222345678999999998876554
No 176
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=23.26 E-value=29 Score=19.70 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNr 95 (111)
..+||..+|++...|..|+.|.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 6788999999999999999765
No 177
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.24 E-value=54 Score=22.92 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=34.1
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
..+++.+..+|...+ ..+ ...++|..+|++...|.+...+-+.
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~ 238 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILE 238 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468899999888864 332 3677899999999999998887665
No 178
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.15 E-value=46 Score=20.85 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqN 94 (111)
+......|....|-.. ....||...|++...|-..|.|
T Consensus 12 l~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 12 LHTASRLSQLQGYHAT-GLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHHCCCchhHHHHccc
Confidence 4455556777765443 4677899999999999999986
No 179
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=23.11 E-value=1.3e+02 Score=19.78 Aligned_cols=33 Identities=12% Similarity=-0.009 Sum_probs=26.7
Q ss_pred CcCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHh
Q psy15969 49 LVFTDLQRRTLQAIFKE--TKRPSKEMQVTIARQL 81 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~--~~~ps~~~r~~LA~~l 81 (111)
..++++++..|+.-|.. +++|+....-.+|-.|
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 46889999999999965 6788988887777444
No 180
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=23.09 E-value=1e+02 Score=19.56 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVG 89 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVk 89 (111)
-+|..|..+|......++..+ ..+||..+|++...|.
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~---~~eLa~~l~~~~~tvs 64 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQS---QIQLAKAIGIEQPSLV 64 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSC---HHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCc---HHHHHHHHCcCHHHHH
Confidence 478899999988776554443 3468999999887665
No 181
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=22.91 E-value=39 Score=21.43 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-.. ....||...|++...|-.+|.|+
T Consensus 23 l~aa~~l~~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK 61 (206)
T 3kz9_A 23 MEIALEVFARRGIGRG-GHADIAEIAQVSVATVFNYFPTR 61 (206)
T ss_dssp HHHHHHHHHHSCCSSC-CHHHHHHHHTSCHHHHHHHCCSH
T ss_pred HHHHHHHHHhcCcccc-cHHHHHHHhCCCHHHHHHHcCCH
Confidence 3444455777776544 36778999999999999999875
No 182
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=22.86 E-value=41 Score=18.63 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhC-CCcccccccc
Q psy15969 50 VFTDLQRRTLQAIFKE-----TKRPSKEMQVTIARQLG-LEPTTVGNFF 92 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~-----~~~ps~~~r~~LA~~lg-L~~~qVkvWF 92 (111)
.+++.+...|...|.. +.+.+..+...+...+| ++...|..+|
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 52 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMM 52 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4677788888888742 45667777766666665 3334444444
No 183
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.58 E-value=29 Score=19.64 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCcccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMN 94 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqN 94 (111)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999877
No 184
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.50 E-value=1.2e+02 Score=19.33 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=25.0
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQ 80 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~ 80 (111)
-.+|+....+|+.+.....+++..+.......
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~ 49 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEG 49 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 35788999999988887778988887765543
No 185
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=22.41 E-value=44 Score=21.58 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-.. ....||...|++...|-.+|.|+
T Consensus 23 l~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK 61 (218)
T 3gzi_A 23 ILAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSK 61 (218)
T ss_dssp HHHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSH
T ss_pred HHHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCH
Confidence 3344445777776544 46778999999999999999875
No 186
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=22.37 E-value=39 Score=21.07 Aligned_cols=39 Identities=5% Similarity=0.068 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|...+|-.. ....||...|++...+-..|.|.
T Consensus 18 l~aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK 56 (177)
T 3kkc_A 18 YNAFISLLQENDYSKI-TVQDVIGLANVGRSTFYSHYESK 56 (177)
T ss_dssp HHHHHHHTTTSCTTTC-CHHHHHHHHCCCHHHHTTTCSST
T ss_pred HHHHHHHHHhCChhHh-hHHHHHHHhCCcHhhHHHHcCCH
Confidence 4444555666665443 46778999999999999999874
No 187
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.29 E-value=42 Score=21.59 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-. .....||...|++...+-.+|.|+
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK 75 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSK 75 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCH
Confidence 444455677777653 346778999999999999999875
No 188
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=22.24 E-value=26 Score=20.23 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|..+.+
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999987653
No 189
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.08 E-value=1.3e+02 Score=18.93 Aligned_cols=33 Identities=18% Similarity=0.024 Sum_probs=24.4
Q ss_pred CcCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Q psy15969 49 LVFTDLQRRTLQAIFKET-KRPSKEMQVTIARQL 81 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~-~~ps~~~r~~LA~~l 81 (111)
-.+|+....+|+.+.... .+++..+.......-
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEA 47 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhh
Confidence 357888889998887766 788888887765544
No 190
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.06 E-value=69 Score=19.51 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.+++.+..++...|..+.+ ......++|..+|++...|.........
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4677777888777753211 1124677899999999999887654433
No 191
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=22.05 E-value=42 Score=22.67 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-. .....||...|++...|-.+|.|+
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK 90 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDR 90 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCH
Confidence 344445577666543 346778999999999999999875
No 192
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=21.92 E-value=58 Score=20.04 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGN 90 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkv 90 (111)
-+|+.|..+|.......+ ....+||..+|++...|..
T Consensus 28 ~lt~~q~~iL~~l~~~~~----~t~~eLa~~l~~~~~tvs~ 64 (145)
T 3g3z_A 28 DLNYNLFAVLYTLATEGS----RTQKHIGEKWSLPKQTVSG 64 (145)
T ss_dssp TCCHHHHHHHHHHHHHCS----BCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC----CCHHHHHHHHCCCHHHHHH
Confidence 478899999988877654 3456688889988776653
No 193
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=21.91 E-value=57 Score=20.07 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGN 90 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkv 90 (111)
-+|+.|..+|........ ...+||..+|++...|..
T Consensus 34 ~lt~~~~~iL~~l~~~~~-----~~~~la~~l~~~~~tvs~ 69 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-----SMVYLANRYFVTQSAITA 69 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-----EHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC-----CHHHHHHHHCCChhHHHH
Confidence 477888888888765432 567788899998877653
No 194
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=21.90 E-value=50 Score=21.48 Aligned_cols=39 Identities=8% Similarity=0.082 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-. .....||...|++...|-.+|.|+
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCH
Confidence 444455677777654 347788999999999999999875
No 195
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=21.82 E-value=99 Score=19.04 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC-C--ccccccccc
Q psy15969 50 VFTDLQRRTLQAIFK-----ETKRPSKEMQVTIARQLGL-E--PTTVGNFFM 93 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgL-~--~~qVkvWFq 93 (111)
.+++.++..|...|. .+.+.+..+...+...+|+ . ...|...|.
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~ 69 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK 69 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 678889999999885 3467888888888877776 3 334555543
No 196
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=21.59 E-value=33 Score=23.06 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=31.6
Q ss_pred CCCcCCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 47 PRLVFTDLQ-RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 47 ~Rt~ft~~q-l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
.+...+.+. +......|....|-. .....||..+|++...|-.+|.|+
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K 69 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTK 69 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSH
T ss_pred cccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCH
Confidence 344455443 444555677666543 346778999999999999999875
No 197
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=21.44 E-value=52 Score=18.05 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=30.2
Q ss_pred CcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCC--cccccccc
Q psy15969 49 LVFTDLQRRTLQAIFKE-----TKRPSKEMQVTIARQLGLE--PTTVGNFF 92 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgL~--~~qVkvWF 92 (111)
..+++.++..|...|.. +.+.+..+...+...+|+. ...|..+|
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 46788999999998853 4567777777777777643 33455444
No 198
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=21.36 E-value=45 Score=21.60 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-. .....||...|++...|-.+|.|.
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK 74 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNK 74 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCH
Confidence 444455577777654 347778999999999999999874
No 199
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=21.30 E-value=41 Score=21.41 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-.. ....||...|++...|-.+|.|+
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK 55 (203)
T 3b81_A 17 ANKIWDIFIANGYENT-TLAFIINKLGISKGALYHYFSSK 55 (203)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHHcCcccC-cHHHHHHHhCCCchhHHHHcCCH
Confidence 4444556777776543 46778999999999999999875
No 200
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=21.30 E-value=46 Score=20.81 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-. .....||...|++...+-..|.|.
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK 52 (188)
T 3qkx_A 14 FSATDRLMAREGLNQ-LSMLKLAKEANVAAGTIYLYFKNK 52 (188)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHTCCHHHHHHHSSSH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHHcCCH
Confidence 444455677777644 347788999999999999999874
No 201
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=21.17 E-value=35 Score=20.05 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHhCCCccccccc
Q psy15969 67 KRPSKEMQVTIARQLGLEPTTVGNF 91 (111)
Q Consensus 67 ~~ps~~~r~~LA~~lgL~~~qVkvW 91 (111)
.|| +...+||..+|++...|.--
T Consensus 22 g~~--psv~EIa~~lgvS~~TVrr~ 44 (77)
T 2jt1_A 22 GAP--VKTRDIADAAGLSIYQVRLY 44 (77)
T ss_dssp TSC--EEHHHHHHHHTCCHHHHHHH
T ss_pred CCC--cCHHHHHHHHCCCHHHHHHH
Confidence 454 45678899999987766543
No 202
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=21.03 E-value=38 Score=20.97 Aligned_cols=18 Identities=11% Similarity=0.398 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNF 91 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvW 91 (111)
...+|..+|+++.+|..|
T Consensus 26 q~~vA~~iGV~~StISR~ 43 (97)
T 1xwr_A 26 TEKTAEAVGVDKSQISRW 43 (97)
T ss_dssp HHHHHHHHTCCTTTHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 456899999999999987
No 203
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.99 E-value=1.6e+02 Score=18.29 Aligned_cols=48 Identities=4% Similarity=-0.161 Sum_probs=32.1
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh-----C--CCccccccccccc
Q psy15969 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQL-----G--LEPTTVGNFFMNA 95 (111)
Q Consensus 48 Rt~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~l-----g--L~~~qVkvWFqNr 95 (111)
...+++++...|...+..++..+..+........ | ++...|..|+...
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 3468888888888888877766665543322111 5 6778888888643
No 204
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=20.96 E-value=38 Score=21.77 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-.. ....||...|++...|-.+|.|.
T Consensus 18 l~aA~~lf~e~G~~~~-t~~~IA~~agvsk~tlY~~F~sK 56 (192)
T 2fq4_A 18 LSASYELLLESGFKAV-TVDKIAERAKVSKATIYKWWPNK 56 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCCHHHHHHHCCCH
Confidence 3444445777776544 47788999999999999999874
No 205
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.95 E-value=1.6e+02 Score=18.43 Aligned_cols=46 Identities=22% Similarity=0.063 Sum_probs=28.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCH-HHHHHHHHHhCCCccccc
Q psy15969 43 TPKKPRLVFTDLQRRTLQAIFKETKRPSK-EMQVTIARQLGLEPTTVG 89 (111)
Q Consensus 43 ~~rr~Rt~ft~~ql~~Le~~F~~~~~ps~-~~r~~LA~~lgL~~~qVk 89 (111)
.+......-|.+|+..-+.++..+. |.. .....|+..+|++...+.
T Consensus 12 ~~~~~~~~aTaeQ~rLAq~i~~~~d-~d~eekVk~L~EmtG~seeeAr 58 (104)
T 1wj7_A 12 TQHKQRPQATAEQIRLAQMISDHND-ADFEEKVKQLIDITGKNQDECV 58 (104)
T ss_dssp CTTCCSSSSSHHHHHHHHHHHHSCC-HHHHHHHHHHHHHTCCCHHHHH
T ss_pred CccccccccCHHHHHHHHHHhcCCc-ccHHHHHHHHHHhhCCCHHHHH
Confidence 4444556789999988887765543 443 344556666687765543
No 206
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=20.81 E-value=22 Score=23.31 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+..-...|....|- .....||...|++...|-.+|.|+
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK 55 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSK 55 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCH
Confidence 44444557777766 568889999999999999999875
No 207
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.75 E-value=45 Score=22.44 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCcccccccc
Q psy15969 50 VFTDLQRRTLQAIFK---ETKRPSKEMQVTIARQLGLEPTTVGNFF 92 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~---~~~~ps~~~r~~LA~~lgL~~~qVkvWF 92 (111)
.+|+.|..+|+...+ .+.|| ....+||..+||+...|..+.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~--~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYP--PSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHcCCCcHHHHHHH
Confidence 367888888887643 34554 235678999999977666554
No 208
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.74 E-value=29 Score=19.54 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..++.+..
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999987654
No 209
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=20.68 E-value=43 Score=21.64 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+..-...|....|-.. ....||...|++...|-.+|.|+
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~sK 55 (212)
T 2ras_A 17 VDVAQAIVEERGGAGL-TLSELAARAGISQANLSRYFETR 55 (212)
T ss_dssp HHHHHHHHHHHTSSCC-CHHHHHHHHTSCHHHHTTTCSSH
T ss_pred HHHHHHHHHHhCcccC-cHHHHHHHhCCCHHHHHHHcCCH
Confidence 3344455777776544 46778999999999999999875
No 210
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.64 E-value=1.1e+02 Score=20.08 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=25.7
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQL 81 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~l 81 (111)
-.+|+....+|+.+.....+|+..+.......-
T Consensus 29 ~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 29 LKYTKQREVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp CCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 357888889998888877889999887765443
No 211
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=20.59 E-value=73 Score=19.43 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHh---h----CCCCCHHHHHHHHHHhCCCc
Q psy15969 50 VFTDLQRRTLQAIFK---E----TKRPSKEMQVTIARQLGLEP 85 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~---~----~~~ps~~~r~~LA~~lgL~~ 85 (111)
.+++.++..|...|. . +.+.+..+...+...+|+..
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~ 44 (156)
T 1wdc_C 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINP 44 (156)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 578888888888874 2 45677777777777777644
No 212
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=20.57 E-value=70 Score=18.34 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFF 92 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWF 92 (111)
.+++.+..+|.......+ . ...+||..+|++...|..-.
T Consensus 17 ~l~~~~~~il~~l~~~~~-~---s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERGG-M---RVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp CCCHHHHHHHHHHHHHCC-B---CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC-C---CHHHHHHHHCCCHHHHHHHH
Confidence 367888888877755433 2 35678888999887765433
No 213
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=20.38 E-value=49 Score=21.04 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 54 LQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 54 ~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
.-+..-...|....|-.. ....||...|++...|-.+|.|+
T Consensus 11 ~Il~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK 51 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGT-TLDDISKSVNIKKASLYYHYDNK 51 (192)
T ss_dssp HHHHHHHHHHHHHCTTTC-CHHHHHHHTTCCHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHcCcccC-CHHHHHHHhCCChHHHHHHCCCH
Confidence 345555666877776543 46778999999999999999875
No 214
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.36 E-value=16 Score=23.57 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNrR~ 97 (111)
.+++.+..+|...| .......+||..+|++...|......-+.
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~ 135 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALA 135 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46666666664432 22234678999999999999999987666
No 215
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.29 E-value=1.2e+02 Score=19.53 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Q psy15969 50 VFTDLQRRTLQAIFKETKRPSKEMQVTIARQL 81 (111)
Q Consensus 50 ~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~l 81 (111)
.+|+....+|+.+.....+++..+.......-
T Consensus 24 r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 24 KNSKQREEVVSVLYRSGTHLSPEEITHSIRQK 55 (150)
T ss_dssp -CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 57888888888888777789988887765543
No 216
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=20.27 E-value=33 Score=19.42 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcccccccccccc
Q psy15969 74 QVTIARQLGLEPTTVGNFFMNAR 96 (111)
Q Consensus 74 r~~LA~~lgL~~~qVkvWFqNrR 96 (111)
..+||..+|++...|..|..+.+
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45899999999999999987654
No 217
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=20.25 E-value=38 Score=21.38 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+......|....|-.. ....||...|++...|-..|.|+
T Consensus 8 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK 46 (194)
T 3bqz_B 8 LGVAKELFIKNGYNAT-TTGEIVKLSESSKGNLYYHFKTK 46 (194)
T ss_dssp HHHHHHHHHHHTTTTC-CHHHHHHHTTCCHHHHHHHTSSH
T ss_pred HHHHHHHHHHcCCccC-CHHHHHHHhCCCchhHHHhCCCH
Confidence 4455556776665543 46778999999999999999874
No 218
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.25 E-value=1.4e+02 Score=19.11 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=23.6
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy15969 49 LVFTDLQRRTLQAIFKETKRPSKEMQVTIARQ 80 (111)
Q Consensus 49 t~ft~~ql~~Le~~F~~~~~ps~~~r~~LA~~ 80 (111)
-.+|+....+|+.+.... +|+..+.......
T Consensus 15 ~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~ 45 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLE-HATPDDILGEVRK 45 (145)
T ss_dssp CCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHh
Confidence 467888899998887776 8888887665543
No 219
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.19 E-value=1.3e+02 Score=23.69 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=31.5
Q ss_pred CCCcCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCCc
Q psy15969 47 PRLVFTDLQRRTLQAIFK-----ETKRPSKEMQVTIARQLGLEP 85 (111)
Q Consensus 47 ~Rt~ft~~ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgL~~ 85 (111)
.+..|+++|+..|..+|. .+.+.+..+...+...+|+..
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~ 335 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP 335 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCC
Confidence 356899999999999995 456788888888888887654
No 220
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=20.07 E-value=39 Score=21.92 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q psy15969 56 RRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNA 95 (111)
Q Consensus 56 l~~Le~~F~~~~~ps~~~r~~LA~~lgL~~~qVkvWFqNr 95 (111)
+..-...|....|-... ...||...|++...|-.+|.|.
T Consensus 16 l~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~t~Y~~F~sK 54 (210)
T 3vib_A 16 MLAALETFYRKGIARTS-LNEIAQAAGVTRDALYWHFKNK 54 (210)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHHCcCHHHHHHHCCCH
Confidence 34444567777775443 6778999999999999999875
Done!