RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15969
(111 letters)
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 42.2 bits (99), Expect = 2e-07
Identities = 40/50 (80%), Positives = 46/50 (92%)
Query: 47 PRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
PRLVFTD+QRRTL AIFKE KRPSKE+Q+TI++QLGLE +TV NFFMNAR
Sbjct: 1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 37.1 bits (86), Expect = 2e-05
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 46 KPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
+PR F+ Q L+ F E + ++ + ++ +LGL + +F NAR +
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 36.3 bits (84), Expect = 6e-05
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKR---PSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
K R V +++ + P+++ + IA Q L V N+F+NARRR
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 35.6 bits (82), Expect = 9e-05
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
K ++ F++ Q L+ F+ K S + +A+ L L V +F N R +
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 54
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 34.9 bits (80), Expect = 1e-04
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
+ + R L+ +F+ + + + + +A++ G+ P V +F+N R RS
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 52
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 35.4 bits (81), Expect = 2e-04
Identities = 21/74 (28%), Positives = 30/74 (40%)
Query: 25 KKTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLE 84
K + +S+ +P R FT Q L+ F K S+ +V IA L L
Sbjct: 8 KVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELN 67
Query: 85 PTTVGNFFMNARRR 98
T V +F N R +
Sbjct: 68 ETQVKIWFQNRRMK 81
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 34.5 bits (79), Expect = 2e-04
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 46 KPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
+ R FT Q L+ F + S+ + +A QL L +T+ +F N R +
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMK 53
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 34.5 bits (79), Expect = 2e-04
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
+KPR FT Q L+ F++ + S + + L L T V +F N R +
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK 54
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 34.5 bits (79), Expect = 3e-04
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
P++ R FT Q L+ F + + + ++ +L L V +F N RRR
Sbjct: 1 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 55
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 34.1 bits (78), Expect = 3e-04
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
+K R+ ++ Q R L+ + K +K+ + I+ L + +F N R +
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 55
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 34.2 bits (78), Expect = 3e-04
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
++ R FT Q + L+A F+ + P + IA L V +F N R +
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 55
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 34.0 bits (78), Expect = 4e-04
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
+ R V + Q TL+ + RP M+ + GL P + +F N R +
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCK 57
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 34.0 bits (78), Expect = 5e-04
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
++ R FT Q L+ F+ T P + +A ++ L + +F N R +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 55
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 33.6 bits (77), Expect = 5e-04
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
R +T Q L+ F + ++ ++ IA L L + +F N R +
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 51
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 33.3 bits (76), Expect = 0.001
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 34 PDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFM 93
P + + + +K R +T Q L+ F +++ + +AR L L V +F
Sbjct: 3 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQ 62
Query: 94 NARRR 98
N R +
Sbjct: 63 NRRMK 67
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 32.2 bits (73), Expect = 0.001
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 48 RLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
R R L+ F E ++P+ E IA QL +E + +F N R++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQK 52
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 32.2 bits (73), Expect = 0.002
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRSMDKWK 104
+K R++F+ Q L+ FK+ K S + +A + L PT V +F N R + + K
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 105 D 105
D
Sbjct: 63 D 63
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 32.1 bits (73), Expect = 0.002
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 51 FTDLQRRTLQAIFKETKR---PSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
FT R L++ F + + + + L + N+ N RR+
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 31.8 bits (72), Expect = 0.002
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 44 PKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
++ R F+ Q L+ F+ T+ P + +A++ L + +F N R R
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRAR 56
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 31.9 bits (72), Expect = 0.003
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 37 SQDQSSTPKKPRLVFTDLQRRTLQAIFKE----TKRPSKEMQVTIARQLGLEPTTVGNFF 92
T K+ R FT Q+ + A + ++ + G+ + +
Sbjct: 10 PSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWM 69
Query: 93 MNARRRS 99
N +
Sbjct: 70 HNNKNSG 76
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 31.4 bits (71), Expect = 0.003
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 46 KPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
K R + + L+ F E +PS + + +A +L LE V +F N R+R
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQRE 54
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 31.6 bits (71), Expect = 0.004
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 37 SQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR 96
S + +K R++FT Q L+ F++ + S + +A + L PT V +F N R
Sbjct: 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 61
Query: 97 RR 98
+
Sbjct: 62 YK 63
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 30.4 bits (68), Expect = 0.011
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 41 SSTPKKPRLVFTDLQRRTLQAIFKET-KRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
S+ + R + LQ+ + P +E T++ QL L T+ FF N R
Sbjct: 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 30.3 bits (68), Expect = 0.012
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKR---PSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
++ R F L F PS+E + +A++ G+ + V N+F N R R
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 29.6 bits (66), Expect = 0.019
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 38 QDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNARR 97
+ K+ R + R +L+ +F + +PS + IA QLGLE V +F N R+
Sbjct: 2 ETLVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQ 61
Query: 98 R 98
+
Sbjct: 62 K 62
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 28.2 bits (63), Expect = 0.045
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 46 KPRLVFTDLQRRTLQAIF-KETKRPSKEMQVTIARQLGLEPTTVGNFFMNARRRS 99
K V TL+ +F TK P ++ +++QL + +F + R +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQD 57
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 27.8 bits (62), Expect = 0.070
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 55 QRRTLQAIFKE-TKRPSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
L+ +F TK P ++ +++QL + ++ +F R +
Sbjct: 4 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQ 48
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 26.9 bits (59), Expect = 0.23
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKR-PSKEMQVTIARQLGLEPTTVGNFFMNARRR 98
+ T+ Q L+ F + + P IA + GL +F
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 56
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 26.9 bits (59), Expect = 0.27
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 46 KPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVG 89
R + +++ F E + P + + IA G
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPG 45
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 26.1 bits (57), Expect = 0.87
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 3 EKRRKKEKKKKKKKKKKKKKKKKK 26
+KRR+ E+K ++ K K+K +K++
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKER 331
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 24.7 bits (54), Expect = 2.4
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 1 MVEKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDISQDQSSTPKKPRLVFTD 53
+V K R+K +KK K K ++ C + S+ K ++ T
Sbjct: 6 LVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTS 58
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 23.9 bits (51), Expect = 2.5
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 45 KKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFMNAR---RRSMD 101
T Q L++ F + + +E + + GL + +F + R +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63
Query: 102 KWKDDDPPKP 111
KW D+ P
Sbjct: 64 KWFRDNASGP 73
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia
virus [TaxId: 10245]}
Length = 62
Score = 23.2 bits (49), Expect = 4.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 75 VTIARQLGLEPTTVGNFFMNARRRSMDKWKDDDPPK 110
+ RQL +E V + +R +M DD PP+
Sbjct: 22 AQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPR 57
>d1dmla1 d.131.1.2 (A:29-169) UL42 {Human herpesvirus type 1
[TaxId: 10298]}
Length = 141
Score = 24.0 bits (52), Expect = 4.3
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 47 PRLVFTDL--QRRTLQAIFKETKRPS 70
P F L Q+R+L ++F+ + P
Sbjct: 66 PTAAFLSLVDQKRSLLSVFRANQYPD 91
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 24.2 bits (52), Expect = 4.8
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 3 EKRRKKEKKKKKKKKKKKKKKKKKTCKRKEEPDIS 37
+ + +K++ K K+ K P S
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIES 242
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 23.9 bits (51), Expect = 5.1
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 20 KKKKKKKTCKRKEEPDISQDQSSTPKKPRLVFTDLQRRTLQAIFKETKRPS 70
++ + K+K+ +I + ++ L + I E K+ S
Sbjct: 1 RRLWEIVEAKKKDILEIDGENLIVQRRNHRFLEVLSGKERVKIIAEFKKAS 51
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 23.5 bits (51), Expect = 6.4
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 4 KRRKKEKKKKKKKKKKKKKKKKKTC 28
K+ ++KK+ + +++K ++ K C
Sbjct: 109 KQLTSQEKKQIRLEREKFEEDYKFC 133
Score = 23.1 bits (50), Expect = 8.6
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 6 RKKEKKKKKKKKKKKKKKKKK 26
+KE+KK+ ++KK+ + ++
Sbjct: 103 LQKEQKKQLTSQEKKQIRLER 123
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 23.1 bits (50), Expect = 9.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 4 KRRKKEKKKKKKKKKKKKKKKKKTC 28
K+ KE+K K K++ +K K+ C
Sbjct: 117 KQMSKEEKLKIKEENEKLLKEYGFC 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.126 0.352
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 399,335
Number of extensions: 18004
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 247
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.0 bits)