RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15971
         (110 letters)



>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI,
          structure initiative; 2.15A {Shigella flexneri 2a str}
          SCOP: b.49.3.1 c.56.5.4
          Length = 348

 Score = 27.6 bits (62), Expect = 0.76
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 21 ETETDSLGQVVVKLKKPETKKVV 43
          E   D LG V+++L +    KV+
Sbjct: 39 EVRFDGLGSVLIRLNESTGPKVM 61


>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown
          function; HET: MSE; 1.90A {Bacillus subtilis} SCOP:
          b.49.3.1 c.56.5.4
          Length = 373

 Score = 25.7 bits (57), Expect = 3.3
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 21 ETETDSLGQVVVKLKKPETKKVV 43
          E  TD LG ++ K    E    +
Sbjct: 43 EVTTDRLGSLIAKKTGAENGPKI 65


>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown
          function, protease, thermophilic,
          SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus
          horikoshii} PDB: 2wzn_A 2pe3_A
          Length = 354

 Score = 25.4 bits (56), Expect = 4.3
 Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 21 ETETDSLGQVVVKLKKPETKKVV 43
          E + D LG V+    K  + +++
Sbjct: 46 EVKVDKLGNVIAH-FKGSSPRIM 67


>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET:
          ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1
          c.56.5.4 PDB: 1y0r_A* 1xfo_A
          Length = 353

 Score = 25.3 bits (56), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 21 ETETDSLGQVVVKLKKPETKKVV 43
          E + D LG V+   KK E  KV+
Sbjct: 43 EVKVDKLGNVIAH-KKGEGPKVM 64


>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase,
           ribonucleotide reductase, allosteric enzyme, binding,
           DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB:
           3hnd_A* 3hne_A* 3hnf_A*
          Length = 792

 Score = 25.2 bits (55), Expect = 5.8
 Identities = 9/50 (18%), Positives = 19/50 (38%)

Query: 39  TKKVVKWTENTIDNEHMNKRKSKCCCIYKKPKANFDESSSDSSDDECENC 88
           T+      + T++ E +  ++       +K +       S  + DEC  C
Sbjct: 741 TRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE;
          1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
          Length = 346

 Score = 24.6 bits (54), Expect = 9.7
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 21 ETETDSLGQVVVKLKKPETKKVV 43
          E +T   G ++   K     K+ 
Sbjct: 41 EAKTTRHGSLIGYKKGKGIGKLA 63


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.306    0.121    0.349 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,484,097
Number of extensions: 69290
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 11
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.7 bits)