Query psy15973
Match_columns 266
No_of_seqs 300 out of 1323
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 17:45:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3526|consensus 100.0 2.1E-44 4.6E-49 330.1 9.6 217 46-266 226-455 (629)
2 cd04059 Peptidases_S8_Protein_ 100.0 2.7E-27 5.9E-32 215.2 17.8 175 57-234 114-297 (297)
3 KOG3525|consensus 99.9 2.1E-27 4.6E-32 227.1 10.1 217 47-266 99-322 (431)
4 cd05561 Peptidases_S8_4 Peptid 99.9 8.9E-24 1.9E-28 187.9 12.4 153 68-259 81-239 (239)
5 cd05562 Peptidases_S53_like Pe 99.9 9.8E-24 2.1E-28 191.6 12.0 168 67-265 77-271 (275)
6 cd07481 Peptidases_S8_Bacillop 99.9 5.5E-22 1.2E-26 178.2 13.2 133 80-234 118-264 (264)
7 cd07498 Peptidases_S8_15 Pepti 99.9 4.4E-22 9.4E-27 176.0 11.3 133 80-232 96-242 (242)
8 cd07474 Peptidases_S8_subtilis 99.9 1.2E-21 2.7E-26 177.7 12.7 170 67-265 106-294 (295)
9 cd07493 Peptidases_S8_9 Peptid 99.9 1.6E-21 3.4E-26 174.9 12.8 139 80-234 103-261 (261)
10 cd04843 Peptidases_S8_11 Pepti 99.9 7E-21 1.5E-25 173.1 13.5 142 79-234 103-277 (277)
11 PTZ00262 subtilisin-like prote 99.8 6.3E-21 1.4E-25 188.1 13.5 175 55-265 406-610 (639)
12 cd07483 Peptidases_S8_Subtilis 99.8 8.6E-21 1.9E-25 173.3 12.4 145 69-234 130-291 (291)
13 cd04077 Peptidases_S8_PCSK9_Pr 99.8 1.2E-20 2.6E-25 168.3 12.8 131 80-235 118-255 (255)
14 cd07479 Peptidases_S8_SKI-1_li 99.8 8.4E-21 1.8E-25 170.4 11.3 138 80-237 98-254 (255)
15 cd07489 Peptidases_S8_5 Peptid 99.8 1.4E-20 3.1E-25 172.9 12.1 160 80-265 123-295 (312)
16 cd07496 Peptidases_S8_13 Pepti 99.8 1.5E-20 3.1E-25 170.8 11.9 131 79-232 135-285 (285)
17 cd07476 Peptidases_S8_thiazoli 99.8 1.7E-20 3.6E-25 169.7 12.0 147 70-239 96-255 (267)
18 cd07485 Peptidases_S8_Fervidol 99.8 1.7E-20 3.6E-25 169.4 12.0 147 69-232 113-273 (273)
19 cd07475 Peptidases_S8_C5a_Pept 99.8 2.4E-20 5.2E-25 173.3 12.3 165 80-265 143-343 (346)
20 cd07497 Peptidases_S8_14 Pepti 99.8 2.7E-20 5.8E-25 171.9 11.9 144 79-233 129-311 (311)
21 cd07484 Peptidases_S8_Thermita 99.8 3.8E-20 8.2E-25 165.4 12.4 142 67-236 112-259 (260)
22 cd07477 Peptidases_S8_Subtilis 99.8 5.2E-20 1.1E-24 160.9 12.0 140 68-232 84-229 (229)
23 cd07487 Peptidases_S8_1 Peptid 99.8 8.6E-20 1.9E-24 162.6 11.9 150 66-234 88-264 (264)
24 KOG3526|consensus 99.8 6.7E-21 1.4E-25 175.6 2.6 114 1-115 298-451 (629)
25 cd07473 Peptidases_S8_Subtilis 99.8 3.2E-19 6.8E-24 159.1 12.6 146 66-234 106-259 (259)
26 cd07490 Peptidases_S8_6 Peptid 99.8 1.8E-19 3.9E-24 160.2 11.0 143 67-234 85-254 (254)
27 PF00082 Peptidase_S8: Subtila 99.8 1.4E-20 3.1E-25 168.8 2.5 173 69-265 92-279 (282)
28 cd07480 Peptidases_S8_12 Pepti 99.8 6.3E-19 1.4E-23 161.1 13.4 177 68-265 90-297 (297)
29 cd07492 Peptidases_S8_8 Peptid 99.8 7.4E-19 1.6E-23 153.7 11.8 137 69-234 80-222 (222)
30 cd04848 Peptidases_S8_Autotran 99.8 1E-18 2.3E-23 154.9 12.1 141 80-234 102-267 (267)
31 cd07482 Peptidases_S8_Lantibio 99.8 7E-19 1.5E-23 159.3 10.6 155 68-232 94-294 (294)
32 cd07491 Peptidases_S8_7 Peptid 99.8 3.6E-18 7.9E-23 152.9 10.3 135 69-217 91-230 (247)
33 cd04847 Peptidases_S8_Subtilis 99.7 7.3E-18 1.6E-22 153.5 11.0 147 79-234 100-291 (291)
34 cd07494 Peptidases_S8_10 Pepti 99.7 2.2E-17 4.8E-22 151.6 11.9 158 58-238 82-287 (298)
35 cd04842 Peptidases_S8_Kp43_pro 99.7 1.7E-17 3.7E-22 150.3 10.8 140 80-234 114-293 (293)
36 cd07488 Peptidases_S8_2 Peptid 99.7 3.3E-17 7.2E-22 146.8 11.0 129 80-225 84-230 (247)
37 cd04857 Peptidases_S8_Tripepti 99.7 4.5E-17 9.8E-22 155.1 12.3 138 80-236 243-412 (412)
38 cd00306 Peptidases_S8_S53 Pept 99.7 7.5E-16 1.6E-20 132.9 11.9 145 68-231 88-240 (241)
39 cd04852 Peptidases_S8_3 Peptid 99.7 4E-16 8.7E-21 143.2 10.0 121 80-234 172-307 (307)
40 cd07478 Peptidases_S8_CspA-lik 99.6 6.8E-15 1.5E-19 142.5 13.5 98 145-259 342-455 (455)
41 KOG1153|consensus 99.5 6E-14 1.3E-18 132.1 5.4 116 80-217 316-435 (501)
42 KOG3525|consensus 99.2 5.9E-12 1.3E-16 121.0 2.1 124 1-128 169-327 (431)
43 cd04056 Peptidases_S53 Peptida 99.2 3.4E-10 7.3E-15 106.7 12.4 178 80-266 118-360 (361)
44 COG1404 AprE Subtilisin-like s 99.0 6E-09 1.3E-13 98.7 12.4 141 82-234 245-397 (508)
45 KOG1114|consensus 98.9 6.2E-09 1.4E-13 105.6 8.6 143 80-239 368-540 (1304)
46 KOG4266|consensus 98.9 7.4E-09 1.6E-13 101.3 8.7 144 80-238 290-447 (1033)
47 cd04059 Peptidases_S8_Protein_ 97.8 3.2E-05 6.9E-10 70.3 4.9 46 2-47 174-219 (297)
48 cd07498 Peptidases_S8_15 Pepti 95.4 0.018 4E-07 50.5 4.0 42 2-47 126-167 (242)
49 cd07482 Peptidases_S8_Lantibio 94.6 0.036 7.8E-07 49.9 3.7 44 4-47 143-204 (294)
50 cd07481 Peptidases_S8_Bacillop 93.9 0.071 1.5E-06 47.7 4.3 43 4-47 146-188 (264)
51 cd07488 Peptidases_S8_2 Peptid 93.4 0.11 2.3E-06 46.7 4.4 43 6-48 123-166 (247)
52 cd07485 Peptidases_S8_Fervidol 93.3 0.11 2.3E-06 46.8 4.3 42 2-47 158-199 (273)
53 cd07493 Peptidases_S8_9 Peptid 93.1 0.12 2.6E-06 46.1 4.3 43 4-47 145-187 (261)
54 COG4934 Predicted protease [Po 93.0 0.13 2.8E-06 55.0 4.9 46 104-154 346-395 (1174)
55 cd04843 Peptidases_S8_11 Pepti 92.4 0.16 3.4E-06 46.3 4.0 41 4-44 140-189 (277)
56 cd07487 Peptidases_S8_1 Peptid 91.4 0.25 5.4E-06 43.6 4.1 49 5-55 137-185 (264)
57 cd04847 Peptidases_S8_Subtilis 91.1 0.18 3.9E-06 45.7 2.9 45 4-48 134-186 (291)
58 cd07473 Peptidases_S8_Subtilis 91.0 0.3 6.6E-06 43.2 4.3 43 5-47 147-190 (259)
59 cd05562 Peptidases_S53_like Pe 91.0 0.26 5.6E-06 44.9 3.9 40 5-47 122-161 (275)
60 cd07496 Peptidases_S8_13 Pepti 90.8 0.28 6.1E-06 44.3 4.0 41 4-47 164-204 (285)
61 cd07477 Peptidases_S8_Subtilis 89.9 0.43 9.2E-06 41.3 4.1 42 4-47 122-163 (229)
62 cd07490 Peptidases_S8_6 Peptid 89.6 0.38 8.3E-06 42.4 3.7 43 4-50 126-168 (254)
63 cd07497 Peptidases_S8_14 Pepti 89.5 0.42 9.1E-06 44.3 4.0 42 4-47 166-207 (311)
64 cd07480 Peptidases_S8_12 Pepti 89.4 0.38 8.3E-06 43.8 3.6 44 2-45 154-198 (297)
65 cd04848 Peptidases_S8_Autotran 88.9 0.55 1.2E-05 41.1 4.2 46 4-49 144-194 (267)
66 cd07484 Peptidases_S8_Thermita 88.9 0.51 1.1E-05 41.9 4.0 39 5-47 152-190 (260)
67 PF00082 Peptidase_S8: Subtila 88.9 0.41 9E-06 42.5 3.4 41 4-46 136-177 (282)
68 cd04842 Peptidases_S8_Kp43_pro 88.1 0.61 1.3E-05 41.9 4.0 43 4-47 145-187 (293)
69 cd07479 Peptidases_S8_SKI-1_li 88.1 0.53 1.2E-05 42.1 3.6 42 4-47 126-167 (255)
70 cd00306 Peptidases_S8_S53 Pept 86.5 0.99 2.1E-05 38.3 4.2 42 5-47 131-172 (241)
71 cd04077 Peptidases_S8_PCSK9_Pr 85.9 0.96 2.1E-05 40.0 3.9 40 5-47 145-184 (255)
72 cd07483 Peptidases_S8_Subtilis 85.8 1 2.3E-05 41.0 4.2 43 4-46 169-218 (291)
73 cd07475 Peptidases_S8_C5a_Pept 85.1 0.95 2.1E-05 41.9 3.6 38 4-41 174-223 (346)
74 cd07489 Peptidases_S8_5 Peptid 83.2 1.4 3.1E-05 40.3 3.9 36 5-41 153-188 (312)
75 cd05561 Peptidases_S8_4 Peptid 82.1 1.7 3.7E-05 38.4 3.9 39 5-47 119-158 (239)
76 cd07474 Peptidases_S8_subtilis 82.1 1.5 3.3E-05 39.5 3.6 36 5-42 148-183 (295)
77 cd04056 Peptidases_S53 Peptida 79.5 3 6.5E-05 39.4 4.8 43 5-47 152-201 (361)
78 cd07476 Peptidases_S8_thiazoli 78.3 2.5 5.4E-05 38.2 3.7 40 4-47 136-175 (267)
79 cd07491 Peptidases_S8_7 Peptid 78.0 3 6.6E-05 37.2 4.1 41 5-47 135-176 (247)
80 cd07494 Peptidases_S8_10 Pepti 69.3 5.3 0.00011 36.7 3.6 35 4-45 143-179 (298)
81 cd07492 Peptidases_S8_8 Peptid 68.1 7.8 0.00017 33.4 4.2 37 5-46 120-156 (222)
82 PTZ00262 subtilisin-like prote 63.2 7.8 0.00017 39.6 3.6 39 5-43 462-514 (639)
83 cd04852 Peptidases_S8_3 Peptid 58.9 11 0.00023 34.5 3.5 34 4-41 202-235 (307)
84 COG2166 sufE Cysteine desulfur 44.2 12 0.00027 31.0 1.3 35 196-233 71-107 (144)
85 cd04857 Peptidases_S8_Tripepti 44.0 26 0.00056 34.0 3.7 39 4-43 274-312 (412)
86 PF13750 Big_3_3: Bacterial Ig 32.6 35 0.00075 28.5 2.2 26 29-54 121-146 (158)
87 PRK15019 CsdA-binding activato 32.0 16 0.00034 30.4 0.1 26 203-231 85-110 (147)
88 TIGR03391 FeS_syn_CsdE cystein 28.1 21 0.00044 29.4 0.1 31 199-232 74-106 (138)
89 PF02657 SufE: Fe-S metabolism 26.3 23 0.0005 28.4 0.1 31 199-232 60-92 (125)
90 PRK09296 cysteine desufuration 25.9 24 0.00051 29.0 0.1 27 203-232 75-101 (138)
91 PF13754 Big_3_4: Bacterial Ig 20.7 1.3E+02 0.0029 20.1 3.1 21 144-164 22-42 (54)
No 1
>KOG3526|consensus
Probab=100.00 E-value=2.1e-44 Score=330.05 Aligned_cols=217 Identities=49% Similarity=0.876 Sum_probs=203.4
Q ss_pred ccceeeec-cCCCCcccCCC-CcchHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceE
Q psy15973 46 KADLTINF-SLSPGVRMLDG-DVTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSI 123 (266)
Q Consensus 46 ~~~l~v~y-ss~~g~~~~~g-~va~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i 123 (266)
-|.++|+| |+++|+||++. ..+|.+||+.+...|+.|+|||+||||.|+|.+++||.....+||..++++||+|+|.|
T Consensus 226 icgvgvaydskvagirmldqpymtdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsi 305 (629)
T KOG3526|consen 226 ICGVGVAYDSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSI 305 (629)
T ss_pred ceeeeeeeccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccE
Confidence 45688999 88999999998 57999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCCCCCCCCCCCCCceEEeeCCCCC-CCcceEEeecCCCeeecCCCC
Q psy15973 124 FVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGSS-FEHQVVTTDLHHDCTSNHTGL 202 (266)
Q Consensus 124 ~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g~~~~yS~~g~~~~~~ap~~g~~-~~~~I~st~~~~~~~~~~sGT 202 (266)
||||+|.+|.. |+||||+|+.+.++|+|.+.-++|+.+.|.+.|++++.++++.|.. |+..+-|||+-+.|+.++|||
T Consensus 306 yvwasgdgge~-ddcncdgyaasmwtisinsaindg~nahydescsstlastfsng~rnpetgvattdlyg~ct~~hsgt 384 (629)
T KOG3526|consen 306 YVWASGDGGED-DDCNCDGYAASMWTISINSAINDGENAHYDESCSSTLASTFSNGGRNPETGVATTDLYGRCTRSHSGT 384 (629)
T ss_pred EEEecCCCCCc-cccCCccchhheEEEEeehhhcCCccccccchhhHHHHHHhhcCCcCCCcceeeeccccceecccCCc
Confidence 99999999985 8899999999999999999999999999999999999999988764 678899999999999999999
Q ss_pred ---hhhhhhhhcccCCCCCCCCCccH---HHHHHcccccCCCCC----CCccccCCCCccCCccceeecCcCCC
Q psy15973 203 ---APLAAGICAWPSRPNPASRGVTC---RHIVVAPARPANLRA----PDWATNGVGRNVSHSFGYGLMDATAM 266 (266)
Q Consensus 203 ---aP~vAGv~AL~l~an~~~P~Lt~---q~il~~TA~~~~~~~----~~w~~n~~g~~~~~~~G~G~vna~~~ 266 (266)
||-+|||+||.||+| |.||| ||+.++|++...+.+ -.|+.|+.|+.|+|.||||.+||.+|
T Consensus 385 saaapeaagvfalalean---p~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam 455 (629)
T KOG3526|consen 385 SAAAPEAAGVFALALEAN---PSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM 455 (629)
T ss_pred cccCccccceeeeeeccC---CCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence 999999999999999 99999 888899998776542 45889999999999999999999886
No 2
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.95 E-value=2.7e-27 Score=215.23 Aligned_cols=175 Identities=63% Similarity=0.968 Sum_probs=150.4
Q ss_pred CCcccCCCCcchHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCC
Q psy15973 57 PGVRMLDGDVTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHD 136 (266)
Q Consensus 57 ~g~~~~~g~va~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~ 136 (266)
...++++....+..++.++.+..+.++|+++|||........+.+.....+++++++++.|.+||+++|+||||++...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~ 193 (297)
T cd04059 114 GGIRMLDGDVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGD 193 (297)
T ss_pred eEEEecCCccccHHHHHHHhcccCCceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCC
Confidence 34455555556677777777777788999999998765544566778889999999999998999999999999998778
Q ss_pred CCCCCCCCccccEEEEeecCCCCCCCCCCCCCCCceEEeeCCCCC-CCcceEEeecC--CCeeecCCCC---hhhhhhhh
Q psy15973 137 NCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGSS-FEHQVVTTDLH--HDCTSNHTGL---APLAAGIC 210 (266)
Q Consensus 137 ~~~~~~~~~~~~vI~Vga~~~~g~~~~yS~~g~~~~~~ap~~g~~-~~~~I~st~~~--~~~~~~~sGT---aP~vAGv~ 210 (266)
+|.++.+++++++|+|+|++.++++++||++|+.+++++|+.+.. +...|+++++. ..++..++|| ||+|||++
T Consensus 194 ~~~~~~~~~~~~vi~Vga~~~~g~~~~~s~~g~~~~~~a~g~~~~~~~~~i~~~~~~~~~~~~~~~sGTS~AaP~VAG~a 273 (297)
T cd04059 194 NCNCDGYNNSIYTISVSAVTANGVRASYSEVGSSVLASAPSGGSGNPEASIVTTDLGGNCNCTSSHNGTSAAAPLAAGVI 273 (297)
T ss_pred CCCCCcccCCCceEEEEeeCCCCCCcCCCCCCCcEEEEecCCCCCCCCCceEeCCCCCCCCcccccCCcchhhhhhHhHH
Confidence 888888899999999999999999999999999999999987643 24568898887 4778889999 99999999
Q ss_pred cccCCCCCCCCCccH---HHHHHcccc
Q psy15973 211 AWPSRPNPASRGVTC---RHIVVAPAR 234 (266)
Q Consensus 211 AL~l~an~~~P~Lt~---q~il~~TA~ 234 (266)
|||+|++ |+||+ |+||++||+
T Consensus 274 All~~~~---p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 274 ALMLEAN---PNLTWRDVQHILALTAR 297 (297)
T ss_pred HHhhccC---CCCCHHHHHHHHHHhcC
Confidence 9999999 99999 789999985
No 3
>KOG3525|consensus
Probab=99.94 E-value=2.1e-27 Score=227.15 Aligned_cols=217 Identities=55% Similarity=0.931 Sum_probs=203.7
Q ss_pred cceeeec-cCCCCcccCCCCcchHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEE
Q psy15973 47 ADLTINF-SLSPGVRMLDGDVTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFV 125 (266)
Q Consensus 47 ~~l~v~y-ss~~g~~~~~g~va~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V 125 (266)
+.+++.| .++++++|+++.+.++.||.++.+++++++|+++||+++|++...+++..+..+++.+++..+|.++|.++|
T Consensus 99 C~vg~~~~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v 178 (431)
T KOG3525|consen 99 CGVGVAYNATIGGIRMLAGCVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFV 178 (431)
T ss_pred CCCCcccCccccceeeeeeecccceecccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeE
Confidence 3456666 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCccccEEEEeecCCCCCCCCCCCCCCCceEEeeCCCCCCCcceEEeecCCCeeecCCCC---
Q psy15973 126 WASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL--- 202 (266)
Q Consensus 126 ~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT--- 202 (266)
||.||.+...++|++++|.++++.++++.++..+..++|++.|...+.++++.+......|.++++...|.....||
T Consensus 179 ~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~~~~~p~y~~~C~~~~~s~~s~~~~~~~~~~~~~~~~~c~e~h~g~s~~ 258 (431)
T KOG3525|consen 179 WASGNGGTCGDSCHCDGYTNSIYTLSISCATQCGKKPQYRERCASCLASTYSSGGPTEECIVCTDPRHSCTEGHTGTSAS 258 (431)
T ss_pred EEecCccccccccccccccCcceecccccccccCCCccccccccccccccccCCCCcceeeeecCCCccccccCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999998876567799999998888889999
Q ss_pred hhhhhhhhcccCCCCCCCCCccH---HHHHHcccccCCCCCCCccccCCCCccCCccceeecCcCCC
Q psy15973 203 APLAAGICAWPSRPNPASRGVTC---RHIVVAPARPANLRAPDWATNGVGRNVSHSFGYGLMDATAM 266 (266)
Q Consensus 203 aP~vAGv~AL~l~an~~~P~Lt~---q~il~~TA~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~~ 266 (266)
+|+.|++++|.|++| |.|+| |++..+|++........|..|.+++.++|.||||++|+.+|
T Consensus 259 ~~~~a~~~~~~~~~~---~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~ 322 (431)
T KOG3525|consen 259 APLAAGIIALALEAN---PCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKAL 322 (431)
T ss_pred cchhcchhhhhhccC---ccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchh
Confidence 999999999999999 99999 89999999988777779999999999999999999999865
No 4
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.90 E-value=8.9e-24 Score=187.93 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=122.8
Q ss_pred hHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccc
Q psy15973 68 DAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSI 147 (266)
Q Consensus 68 ~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~ 147 (266)
..++|+.+..+ +.++|+|+||+.+. ...+.++++++.++ |+++|+||||++.... ...|+..+
T Consensus 81 ~i~~ai~~a~~-~g~~VIn~S~g~~~--------~~~l~~ai~~a~~~-----gilvv~AaGN~g~~~~---~~~Pa~~~ 143 (239)
T cd05561 81 ALARALDWLAE-QGVRVVNISLAGPP--------NALLAAAVAAAAAR-----GMVLVAAAGNDGPAAP---PLYPAAYP 143 (239)
T ss_pred HHHHHHHHHHH-CCCCEEEeCCCCCC--------CHHHHHHHHHHHHC-----CCEEEEecCCCCCCCC---ccCcccCC
Confidence 34455444444 57999999998542 23567788887775 9999999999986421 22355789
Q ss_pred cEEEEeecCCCCCCCCCCCCCCCceEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCCcc
Q psy15973 148 WTLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRGVT 224 (266)
Q Consensus 148 ~vI~Vga~~~~g~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt 224 (266)
.+|+|++++.++++..||++|+.+++.||+ .+|+++.+.+.| ..++|| ||||||++||+||++ | |+
T Consensus 144 ~vi~V~a~~~~~~~~~~s~~g~~~di~ApG------~~i~~~~~~~~~-~~~sGTS~AaP~vaG~aAll~~~~---p-~~ 212 (239)
T cd05561 144 GVIAVTAVDARGRLYREANRGAHVDFAAPG------VDVWVAAPGGGY-RYVSGTSFAAPFVTAALALLLQAS---P-LA 212 (239)
T ss_pred CceEEEeecCCCCccccCCCCCcceEEccc------cceecccCCCCE-EEeCCHHHHHHHHHHHHHHHHhcC---C-CC
Confidence 999999999999999999999999999998 568888777764 568999 999999999999999 9 99
Q ss_pred H---HHHHHcccccCCCCCCCccccCCCCccCCcccee
Q psy15973 225 C---RHIVVAPARPANLRAPDWATNGVGRNVSHSFGYG 259 (266)
Q Consensus 225 ~---q~il~~TA~~~~~~~~~w~~n~~g~~~~~~~G~G 259 (266)
+ +++|+.||++.... + +++.||||
T Consensus 213 ~~~i~~~L~~ta~~~g~~--~---------~d~~~G~G 239 (239)
T cd05561 213 PDDARARLAATAKDLGPP--G---------RDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHhhccCCC--C---------cCCCcCCC
Confidence 9 67899999876543 2 48999998
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.90 E-value=9.8e-24 Score=191.65 Aligned_cols=168 Identities=20% Similarity=0.161 Sum_probs=122.4
Q ss_pred chHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCcc
Q psy15973 67 TDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNS 146 (266)
Q Consensus 67 a~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~ 146 (266)
.+.++|+.+..+ +.++|+|+||+.....+..+ ..+.+++.+++++ +|+++|+||||++... ....++.+
T Consensus 77 ~~i~~ai~~a~~-~g~~Vin~S~g~~~~~~~~~---~~~~~ai~~a~~~----~GvlvVaAAGN~g~~~---~~~~Pa~~ 145 (275)
T cd05562 77 LDFAAAIRALAA-AGADIIVDDIGYLNEPFFQD---GPIAQAVDEVVAS----PGVLYFSSAGNDGQSG---SIFGHAAA 145 (275)
T ss_pred HHHHHHHHHHHH-cCCCEEEecccccCCCcccC---CHHHHHHHHHHHc----CCcEEEEeCCCCCCCC---CccCCCCC
Confidence 444555554445 58999999999753322111 2456777777664 6999999999999732 23446789
Q ss_pred ccEEEEeecCCCCCCCCCCC------------C---C------CCceEEeeCCCCCCCcceEEeecCCCeeecCCCC---
Q psy15973 147 IWTLSTSSATETGQVPWYSE------------A---C------SSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL--- 202 (266)
Q Consensus 147 ~~vI~Vga~~~~g~~~~yS~------------~---g------~~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT--- 202 (266)
+.||+|+|++.++++..||+ + + ..++++||++ ..+.++...+. +..++||
T Consensus 146 ~~vitVgA~~~~~~~~~~s~~~~~~~~s~~~~~~~~~p~~~~~~~~di~Apgg-----~~~~~~~~~~~-~~~~sGTS~A 219 (275)
T cd05562 146 PGAIAVGAVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDG-----VNGTVDGDGDG-PPNFFGTSAA 219 (275)
T ss_pred CCeEEEEeeccCCCcccccccccCCCcccccCCcccCcCCCCCcCCeEEcCCc-----ccccCCCcCCc-eeecccchHH
Confidence 99999999999998875542 2 2 1467778752 22344444444 5678999
Q ss_pred hhhhhhhhcccCCCCCCCCCccH---HHHHHcccccCCCCCCCccccCCCCccCCccceeecCcCC
Q psy15973 203 APLAAGICAWPSRPNPASRGVTC---RHIVVAPARPANLRAPDWATNGVGRNVSHSFGYGLMDATA 265 (266)
Q Consensus 203 aP~vAGv~AL~l~an~~~P~Lt~---q~il~~TA~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~ 265 (266)
||||||++|||||++ |+||+ |++|++||++.... + +++.||||+||+.+
T Consensus 220 aP~VaG~aALl~~~~---p~lt~~~v~~~L~~tA~~~~~~--g---------~d~~~G~G~vda~~ 271 (275)
T cd05562 220 APHAAGVAALVLSAN---PGLTPADIRDALRSTALDMGEP--G---------YDNASGSGLVDADR 271 (275)
T ss_pred HHHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCcccCCC--C---------CCCCcCcCcccHHH
Confidence 999999999999999 99999 78899999887532 2 37899999999875
No 6
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.88 E-value=5.5e-22 Score=178.24 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=108.6
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCC
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETG 159 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g 159 (266)
+.++|+++|||.... ....+.++++.+.. +|+++|+||||++...+.+. ..|+.++++|+|+|++.++
T Consensus 118 ~~~~Iin~S~G~~~~------~~~~~~~~~~~~~~-----~gvlvV~aaGN~~~~~~~~~-~~pa~~~~vi~Vga~~~~~ 185 (264)
T cd07481 118 LAPDVINNSWGGPSG------DNEWLQPAVAAWRA-----AGIFPVFAAGNDGPRCSTLN-APPANYPESFAVGATDRND 185 (264)
T ss_pred cCCeEEEeCCCcCCC------CchHHHHHHHHHHH-----CCCEEEEECCCCCCCCCCCc-CCCCcCCceEEEEecCCCC
Confidence 568999999998643 12344555555443 59999999999987544333 3567889999999999999
Q ss_pred CCCCCCCCCCCc------eEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCC--ccH---
Q psy15973 160 QVPWYSEACSST------LATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRG--VTC--- 225 (266)
Q Consensus 160 ~~~~yS~~g~~~------~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~--Lt~--- 225 (266)
++..||++|+.. +++||+ ..|+++.+.+. +..++|| ||+|||++|||||++ |+ ||+
T Consensus 186 ~~~~~S~~g~~~~~~~~~dv~ApG------~~i~s~~~~~~-~~~~~GTS~AaP~vaG~aAll~~~~---p~~~l~~~~v 255 (264)
T cd07481 186 VLADFSSRGPSTYGRIKPDISAPG------VNIRSAVPGGG-YGSSSGTSMAAPHVAGVAALLWSAN---PSLIGDVDAT 255 (264)
T ss_pred CCccccCCCCCCCCCcCceEEECC------CCeEEecCCCc-eEeeCcHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH
Confidence 999999999988 899997 56888887755 5678999 999999999999999 99 998
Q ss_pred HHHHHcccc
Q psy15973 226 RHIVVAPAR 234 (266)
Q Consensus 226 q~il~~TA~ 234 (266)
|++|+.||+
T Consensus 256 ~~~L~~tA~ 264 (264)
T cd07481 256 EAILTETAR 264 (264)
T ss_pred HHHHHHhcC
Confidence 788999885
No 7
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.87 E-value=4.4e-22 Score=176.00 Aligned_cols=133 Identities=26% Similarity=0.402 Sum_probs=107.4
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCC
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETG 159 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g 159 (266)
+.++|+|+|||.....+ ....++..++++.|.++|+|+|+||||++.... ..++.++++|+|+|++.++
T Consensus 96 ~~~~Vin~S~g~~~~~~-------~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~----~~pa~~~~vi~Vga~~~~~ 164 (242)
T cd07498 96 NGADVISNSWGGSDSTE-------SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVS----SGYAANPSVIAVAATDSND 164 (242)
T ss_pred CCCeEEEeccCCCCCCc-------hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccC----CCCcCCCCeEEEEEeCCCC
Confidence 57899999999865432 345667777777777789999999999987532 2466889999999999999
Q ss_pred CCCCCCCCCCCceEEeeCCCCCCCcceEEe--------ecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCCccH---
Q psy15973 160 QVPWYSEACSSTLATTYSSGSSFEHQVVTT--------DLHHDCTSNHTGL---APLAAGICAWPSRPNPASRGVTC--- 225 (266)
Q Consensus 160 ~~~~yS~~g~~~~~~ap~~g~~~~~~I~st--------~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt~--- 225 (266)
+++.||++|+.++++||+.. +.++ +....++..++|| ||+|||++|||||++ |+||+
T Consensus 165 ~~~~~s~~g~~~~~~apG~~------~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~---p~l~~~~i 235 (242)
T cd07498 165 ARASYSNYGNYVDLVAPGVG------IWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGVAALILSAN---PNLTPAEV 235 (242)
T ss_pred CccCcCCCCCCeEEEeCcCC------cccCCccccccccCCCCceEeeCcHHHHHHHHHHHHHHHHHhC---CCCCHHHH
Confidence 99999999999999999854 3333 1224456778999 999999999999999 99999
Q ss_pred HHHHHcc
Q psy15973 226 RHIVVAP 232 (266)
Q Consensus 226 q~il~~T 232 (266)
|++|++|
T Consensus 236 ~~~L~~t 242 (242)
T cd07498 236 EDILTST 242 (242)
T ss_pred HHHHHhC
Confidence 5667654
No 8
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.87 E-value=1.2e-21 Score=177.75 Aligned_cols=170 Identities=18% Similarity=0.175 Sum_probs=126.4
Q ss_pred chHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCcc
Q psy15973 67 TDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNS 146 (266)
Q Consensus 67 a~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~ 146 (266)
.+.++|+....+ +.++|+|+|||..... +.....++++++.++ |+|+|+||||++..... ...++.+
T Consensus 106 ~~~~~ai~~a~~-~~~~Iin~S~g~~~~~-----~~~~~~~~~~~~~~~-----gil~V~aAGN~g~~~~~--~~~pa~~ 172 (295)
T cd07474 106 DVIIAAIEQAVD-DGMDVINLSLGSSVNG-----PDDPDAIAINNAVKA-----GVVVVAAAGNSGPAPYT--IGSPATA 172 (295)
T ss_pred HHHHHHHHHHHH-cCCCEEEeCCCCCCCC-----CCCHHHHHHHHHHhc-----CCEEEEECCCCCCCCCc--ccCCCcC
Confidence 445555554444 3789999999976432 234567788887765 99999999999865432 2345678
Q ss_pred ccEEEEeecC-----CCCCCCCCCCCCCC-------ceEEeeCCCCCCCcceEEeecC-CCeeecCCCC---hhhhhhhh
Q psy15973 147 IWTLSTSSAT-----ETGQVPWYSEACSS-------TLATTYSSGSSFEHQVVTTDLH-HDCTSNHTGL---APLAAGIC 210 (266)
Q Consensus 147 ~~vI~Vga~~-----~~g~~~~yS~~g~~-------~~~~ap~~g~~~~~~I~st~~~-~~~~~~~sGT---aP~vAGv~ 210 (266)
+++|+|++++ .......|++.+.. .++.||+ ..|.++... ...+..++|| ||+|||++
T Consensus 173 ~~~i~Vga~~~~~~~~~~~~~~~~s~~~~~~~~~~kpdv~apG------~~i~~~~~~~~~~~~~~~GTS~AaP~vaG~a 246 (295)
T cd07474 173 PSAITVGASTVADVAEADTVGPSSSRGPPTSDSAIKPDIVAPG------VDIMSTAPGSGTGYARMSGTSMAAPHVAGAA 246 (295)
T ss_pred CCeEEEeeeeccCcCCCCceeccCCCCCCCCCCCcCCCEECCc------CceEeeccCCCCceEEeccHHHHHHHHHHHH
Confidence 9999999976 34455566666542 3578887 568887765 2346678999 99999999
Q ss_pred cccCCCCCCCCCccH---HHHHHcccccCCCCCCCccccCCCCccCCccceeecCcCC
Q psy15973 211 AWPSRPNPASRGVTC---RHIVVAPARPANLRAPDWATNGVGRNVSHSFGYGLMDATA 265 (266)
Q Consensus 211 AL~l~an~~~P~Lt~---q~il~~TA~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~ 265 (266)
||++|++ |+|++ |++|+.||++....+..| .++..+|||+||+.+
T Consensus 247 All~~~~---p~l~~~~v~~~L~~tA~~~~~~~~~~-------~~~~~~G~G~l~~~~ 294 (295)
T cd07474 247 ALLKQAH---PDWSPAQIKAALMNTAKPLYDSDGVV-------YPVSRQGAGRVDALR 294 (295)
T ss_pred HHHHhhC---CCCCHHHHHHHHHhhCcccccCCCCc-------CChhccCcceecccc
Confidence 9999999 99999 789999999887554333 147899999999976
No 9
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.86 E-value=1.6e-21 Score=174.90 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=109.7
Q ss_pred CeeEEEeCCCCCCCCCCc--------ccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEE
Q psy15973 80 GHIDIYSASWGPDDDGKT--------VDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLS 151 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~--------~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~ 151 (266)
+.++|+|+|||.....+. +++....+.++++++.++ |+++|+||||++... .+....|+..+++|+
T Consensus 103 ~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~-----gilvv~AAGN~g~~~-~~~~~~Pa~~~~vi~ 176 (261)
T cd07493 103 LGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASK-----GMLVVNSAGNEGSTQ-WKGIGAPADAENVLS 176 (261)
T ss_pred cCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhC-----CeEEEEECCCCCCCC-CCcccCcccCCceEE
Confidence 579999999997643222 223334566777777765 999999999999752 234455678899999
Q ss_pred EeecCCCCCCCCCCCCCCCc------eEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCC
Q psy15973 152 TSSATETGQVPWYSEACSST------LATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRG 222 (266)
Q Consensus 152 Vga~~~~g~~~~yS~~g~~~------~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~ 222 (266)
|+|++.++++..||++|+.. ++++|+ ..|++....+. +..++|| ||+|||++|||||++ |+
T Consensus 177 Vga~~~~~~~~~~S~~G~~~~~~~~pdi~a~G------~~~~~~~~~~~-~~~~sGTS~AaP~vaG~aAll~~~~---p~ 246 (261)
T cd07493 177 VGAVDANGNKASFSSIGPTADGRLKPDVMALG------TGIYVINGDGN-ITYANGTSFSCPLIAGLIACLWQAH---PN 246 (261)
T ss_pred EEEeccCCCCCccCCcCCCCCCCcCCceEecC------CCeEEEcCCCc-EEeeCcHHHHHHHHHHHHHHHHHHC---CC
Confidence 99999999999999999864 578886 45666555554 5678999 999999999999999 99
Q ss_pred ccH---HHHHHcccc
Q psy15973 223 VTC---RHIVVAPAR 234 (266)
Q Consensus 223 Lt~---q~il~~TA~ 234 (266)
||+ +++|++||+
T Consensus 247 lt~~~i~~~l~~tA~ 261 (261)
T cd07493 247 WTNLQIKEAILKSAS 261 (261)
T ss_pred CCHHHHHHHHHHhcC
Confidence 999 788888885
No 10
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.85 E-value=7e-21 Score=173.12 Aligned_cols=142 Identities=22% Similarity=0.232 Sum_probs=105.4
Q ss_pred CCeeEEEeCCCCCCCCCCccc--CchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCC-------CCCc--cc
Q psy15973 79 PGHIDIYSASWGPDDDGKTVD--GPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCD-------GYTN--SI 147 (266)
Q Consensus 79 ~q~IdV~S~SWG~~ddG~~~~--g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~-------~~~~--~~ 147 (266)
...++++|+||+......... .+.+.+.++++++. .+|+++|+||||++...+.+.++ .+++ .+
T Consensus 103 ~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~-----~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (277)
T cd04843 103 PGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTAT-----DLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDS 177 (277)
T ss_pred CCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHH-----hCCcEEEEeCCCCCccccCcccccccccccCCcCcCCC
Confidence 456889999998864322111 12233445666554 46999999999999865544431 2332 36
Q ss_pred cEEEEeecCCCC-C-CCCCCCCCCCceEEeeCCCCCCCcceEEeecCC---------CeeecCCCC---hhhhhhhhccc
Q psy15973 148 WTLSTSSATETG-Q-VPWYSEACSSTLATTYSSGSSFEHQVVTTDLHH---------DCTSNHTGL---APLAAGICAWP 213 (266)
Q Consensus 148 ~vI~Vga~~~~g-~-~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~~---------~~~~~~sGT---aP~vAGv~AL~ 213 (266)
++|+|+|++.++ . ++.||++|+.+++.||+ ..|++|.+.+ .|+..++|| ||||||++|||
T Consensus 178 ~vI~VgA~~~~~~~~~~~fSn~G~~vdi~APG------~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl 251 (277)
T cd04843 178 GAIMVGAGSSTTGHTRLAFSNYGSRVDVYGWG------ENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASI 251 (277)
T ss_pred CeEEEEeccCCCCCccccccCCCCccceEcCC------CCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHH
Confidence 899999999864 3 89999999999999997 5689987754 356778999 99999999999
Q ss_pred CC----C-CCCCCCccH---HHHHHcccc
Q psy15973 214 SR----P-NPASRGVTC---RHIVVAPAR 234 (266)
Q Consensus 214 l~----a-n~~~P~Lt~---q~il~~TA~ 234 (266)
++ + | |+||+ +++|.+|++
T Consensus 252 ~s~~~~~~~---p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 252 QGIAKQKGG---TPLTPIEMRELLTATGT 277 (277)
T ss_pred HHHHhhcCC---CCCCHHHHHHHHHhcCC
Confidence 75 2 7 99999 678888763
No 11
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.85 E-value=6.3e-21 Score=188.13 Aligned_cols=175 Identities=14% Similarity=0.147 Sum_probs=125.5
Q ss_pred CCCCcccCC----CCcchHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCC
Q psy15973 55 LSPGVRMLD----GDVTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGN 130 (266)
Q Consensus 55 s~~g~~~~~----g~va~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN 130 (266)
++-.+++++ +.+.+.++|+.+..+ +.++|+|+|||... ....+.+|+.++.++ |+|+|+||||
T Consensus 406 kLi~vKVld~~G~G~~sdI~~AI~yA~~-~GA~VINmSlG~~~-------~s~~l~~AV~~A~~k-----GILVVAAAGN 472 (639)
T PTZ00262 406 KLIICKALDSHKLGRLGDMFKCFDYCIS-REAHMINGSFSFDE-------YSGIFNESVKYLEEK-----GILFVVSASN 472 (639)
T ss_pred ccceEEEecCCCCccHHHHHHHHHHHHH-CCCCEEEeccccCC-------ccHHHHHHHHHHHHC-----CCEEEEeCCC
Confidence 333445554 345666777666555 57899999998642 224567888888775 9999999999
Q ss_pred CCCCCC------CCCCC---CCC-----ccccEEEEeecCCCCC----CCCCCCCC-CCceEEeeCCCCCCCcceEEeec
Q psy15973 131 GGRDHD------NCNCD---GYT-----NSIWTLSTSSATETGQ----VPWYSEAC-SSTLATTYSSGSSFEHQVVTTDL 191 (266)
Q Consensus 131 ~g~~~~------~~~~~---~~~-----~~~~vI~Vga~~~~g~----~~~yS~~g-~~~~~~ap~~g~~~~~~I~st~~ 191 (266)
++.... .|+.+ .|+ ..+.||+|+|++.+.. ...+|+++ +.++++||| ..|+||.+
T Consensus 473 ~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~~~~s~s~~Snyg~~~VDIaAPG------~dI~St~p 546 (639)
T PTZ00262 473 CSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKNNQYSLSPNSFYSAKYCQLAAPG------TNIYSTFP 546 (639)
T ss_pred CCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCCCcccccccccCCCCcceEEeCC------CCeeeccC
Confidence 986421 23211 222 2578999999987432 22345665 678999998 57999998
Q ss_pred CCCeeecCCCC---hhhhhhhhcccCCCCCCCCCccH---HHHHHcccccCCCCCCCccccCCCCccCCccce-eecCcC
Q psy15973 192 HHDCTSNHTGL---APLAAGICAWPSRPNPASRGVTC---RHIVVAPARPANLRAPDWATNGVGRNVSHSFGY-GLMDAT 264 (266)
Q Consensus 192 ~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt~---q~il~~TA~~~~~~~~~w~~n~~g~~~~~~~G~-G~vna~ 264 (266)
.+. |..++|| ||||||++||||+++ |+||+ +++|..||++.+.. .+.++| |+||++
T Consensus 547 ~g~-Y~~~SGTSmAAP~VAGvAALLlS~~---P~LT~~qV~~iL~~TA~~l~~~-------------~n~~~wgG~LDa~ 609 (639)
T PTZ00262 547 KNS-YRKLNGTSMAAPHVAAIASLILSIN---PSLSYEEVIRILKESIVQLPSL-------------KNKVKWGGYLDIH 609 (639)
T ss_pred CCc-eeecCCCchhHHHHHHHHHHHHhhC---CCCCHHHHHHHHHHhCccCCCC-------------CCccccCcEEcHH
Confidence 876 5678999 999999999999999 99999 68899999875421 233344 799986
Q ss_pred C
Q psy15973 265 A 265 (266)
Q Consensus 265 ~ 265 (266)
+
T Consensus 610 k 610 (639)
T PTZ00262 610 H 610 (639)
T ss_pred H
Confidence 4
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.85 E-value=8.6e-21 Score=173.34 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=109.1
Q ss_pred HHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCC-CC------
Q psy15973 69 AVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCN-CD------ 141 (266)
Q Consensus 69 ~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~-~~------ 141 (266)
.++|+....+ +.++|+|+|||.... .....+.++++++.+ +|+|+|+||||++...+.+. ++
T Consensus 130 i~~Ai~~a~~-~g~~IiN~S~G~~~~-----~~~~~~~~ai~~a~~-----~gilvV~AAGN~g~~~~~~~~~p~~~~~~ 198 (291)
T cd07483 130 IANAIRYAVD-NGAKVINMSFGKSFS-----PNKEWVDDAIKYAES-----KGVLIVHAAGNDGLDLDITPNFPNDYDKN 198 (291)
T ss_pred HHHHHHHHHH-CCCcEEEeCCCCCCC-----CccHHHHHHHHHHHh-----CCeEEEEeCCCCCCCCCcCcCCCCccccc
Confidence 3444443334 578999999996421 112356677777655 49999999999997544221 11
Q ss_pred CCCccccEEEEeecCCCCC---CCCCCCCCC-CceEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccC
Q psy15973 142 GYTNSIWTLSTSSATETGQ---VPWYSEACS-STLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPS 214 (266)
Q Consensus 142 ~~~~~~~vI~Vga~~~~g~---~~~yS~~g~-~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l 214 (266)
.+...+.+|+|+|++..+. ++.||++|+ .+++.||+ ..|+++.+.+. +..++|| ||+|||++||+|
T Consensus 199 ~~~~~~~vi~Vga~~~~~~~~~~~~~Sn~G~~~vdi~APG------~~i~s~~~~~~-~~~~sGTS~AaP~vaG~aAl~~ 271 (291)
T cd07483 199 GGEPANNFITVGASSKKYENNLVANFSNYGKKNVDVFAPG------ERIYSTTPDNE-YETDSGTSMAAPVVSGVAALIW 271 (291)
T ss_pred CccccCCeeEEeeccccCCcccccccCCCCCCceEEEeCC------CCeEeccCcCC-eEeeccHHHHHHHHHHHHHHHH
Confidence 1123478999999998764 689999998 68999997 56889888776 4568999 999999999999
Q ss_pred CCCCCCCCccH---HHHHHcccc
Q psy15973 215 RPNPASRGVTC---RHIVVAPAR 234 (266)
Q Consensus 215 ~an~~~P~Lt~---q~il~~TA~ 234 (266)
|++ |+||+ |++|++||+
T Consensus 272 s~~---p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 272 SYY---PNLTAKEVKQIILESGV 291 (291)
T ss_pred HHC---CCCCHHHHHHHHHHhCC
Confidence 999 99999 788888874
No 13
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.84 E-value=1.2e-20 Score=168.30 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=110.0
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCC
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETG 159 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g 159 (266)
+.++|+|+|||... .+.+.+++.++.++ |+++|+||||++... | ...++..+.+|+|++++.++
T Consensus 118 ~~~~iin~S~g~~~--------~~~~~~~~~~~~~~-----g~liV~aaGN~g~~~--~-~~~pa~~~~vi~Vga~~~~~ 181 (255)
T cd04077 118 GKPAVANMSLGGGA--------STALDAAVAAAVNA-----GVVVVVAAGNSNQDA--C-NYSPASAPEAITVGATDSDD 181 (255)
T ss_pred CCCeEEEeCCCCCC--------CHHHHHHHHHHHHC-----CCEEEEeCCCCCCCC--C-CcCccCCCceEEEeccCCCC
Confidence 46899999999753 24567788777765 999999999998643 2 34466889999999999999
Q ss_pred CCCCCCCCCCCceEEeeCCCCCCCcceEEeecC-CCeeecCCCC---hhhhhhhhcccCCCCCCCCCccH---HHHHHcc
Q psy15973 160 QVPWYSEACSSTLATTYSSGSSFEHQVVTTDLH-HDCTSNHTGL---APLAAGICAWPSRPNPASRGVTC---RHIVVAP 232 (266)
Q Consensus 160 ~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~-~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt~---q~il~~T 232 (266)
.+..||++|+.+++.||+ ..|.++.+. +..+..++|| ||+|||++|||||++ |+||+ |++|+.|
T Consensus 182 ~~~~~S~~g~~~~i~apG------~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~---p~~~~~~v~~~L~~t 252 (255)
T cd04077 182 ARASFSNYGSCVDIFAPG------VDILSAWIGSDTATATLSGTSMAAPHVAGLAAYLLSLG---PDLSPAEVKARLLNL 252 (255)
T ss_pred CccCcccCCCCCcEEeCC------CCeEecccCCCCcEEeeCcHHHHHHHHHHHHHHHHhhC---CCCCHHHHHHHHHhh
Confidence 999999999999999997 457777763 3356789999 999999999999999 99999 7889999
Q ss_pred ccc
Q psy15973 233 ARP 235 (266)
Q Consensus 233 A~~ 235 (266)
|++
T Consensus 253 A~~ 255 (255)
T cd04077 253 ATK 255 (255)
T ss_pred ccC
Confidence 874
No 14
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.84 E-value=8.4e-21 Score=170.44 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=105.5
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCC
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETG 159 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g 159 (266)
+.++|+|+|||.++. + ...+.+++.++.+ +|+++|+||||++.... ....|+..+.||+|+|++.++
T Consensus 98 ~~~~Vin~S~G~~~~-~-----~~~~~~~~~~~~~-----~gi~vV~aaGN~g~~~~--~~~~Pa~~~~vi~Vga~~~~~ 164 (255)
T cd07479 98 TKIDVLNLSIGGPDF-M-----DKPFVDKVWELTA-----NNIIMVSAIGNDGPLYG--TLNNPADQMDVIGVGGIDFDD 164 (255)
T ss_pred cCCCEEEeeccCCCC-C-----CcHHHHHHHHHHH-----CCcEEEEEcCCCCCCcc--cccCcccCCCceEEeeeccCC
Confidence 578999999997531 1 1123455555443 59999999999986422 234567889999999999999
Q ss_pred CCCCCCCCCCC------------ceEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCC-CCCCc
Q psy15973 160 QVPWYSEACSS------------TLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNP-ASRGV 223 (266)
Q Consensus 160 ~~~~yS~~g~~------------~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~-~~P~L 223 (266)
+++.||++|+. .++.||+ ..|+++.+.+.| ..++|| ||||||++|||+|++| ..+.|
T Consensus 165 ~~~~~S~~g~~~~~~p~~~g~~~~di~apG------~~i~~~~~~~~~-~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~ 237 (255)
T cd07479 165 NIARFSSRGMTTWELPGGYGRVKPDIVTYG------SGVYGSKLKGGC-RALSGTSVASPVVAGAVALLLSTVPEKRDLI 237 (255)
T ss_pred ccccccCCCCCcccccCCCCCcCccEEecC------CCeeccccCCCe-EEeccHHHHHHHHHHHHHHHHHhCccccCCC
Confidence 99999999964 3455665 567887777765 468999 9999999999999992 12278
Q ss_pred cH---HHHHHcccccCC
Q psy15973 224 TC---RHIVVAPARPAN 237 (266)
Q Consensus 224 t~---q~il~~TA~~~~ 237 (266)
|+ |++|++||++++
T Consensus 238 ~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 238 NPASMKQALIESATRLP 254 (255)
T ss_pred CHHHHHHHHHhhcccCC
Confidence 98 899999998764
No 15
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.84 E-value=1.4e-20 Score=172.86 Aligned_cols=160 Identities=17% Similarity=0.160 Sum_probs=121.2
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCC
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETG 159 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g 159 (266)
+.++|+++||+... +|.. ..+.+++.+..++ |+++|+||||++.....+ ...++..+++|+|++++
T Consensus 123 ~~~~iIn~S~g~~~-~~~~----~~~~~~~~~~~~~-----gv~iv~aaGN~g~~~~~~-~~~p~~~~~vi~Vga~~--- 188 (312)
T cd07489 123 DGADVITASLGGPS-GWSE----DPWAVVASRIVDA-----GVVVTIAAGNDGERGPFY-ASSPASGRGVIAVASVD--- 188 (312)
T ss_pred cCCCEEEeCCCcCC-CCCC----CHHHHHHHHHHHC-----CCEEEEECCCCCCCCCCc-ccCCccCCCeEEEEEec---
Confidence 57999999999754 2322 2345566666554 999999999998753221 23456789999999998
Q ss_pred CCCCCCCCCCCc------eEEeeCCCCCCCcceEEeecCCC-eeecCCCC---hhhhhhhhcccCCCCCCCCCccH---H
Q psy15973 160 QVPWYSEACSST------LATTYSSGSSFEHQVVTTDLHHD-CTSNHTGL---APLAAGICAWPSRPNPASRGVTC---R 226 (266)
Q Consensus 160 ~~~~yS~~g~~~------~~~ap~~g~~~~~~I~st~~~~~-~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt~---q 226 (266)
..||++|+.. +++||+ ..|+++.+... .+..++|| ||+|||++||++|++ .|.|++ |
T Consensus 189 --~~~s~~g~~~~~~~kpdv~ApG------~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~--~~~~~~~~v~ 258 (312)
T cd07489 189 --SYFSSWGPTNELYLKPDVAAPG------GNILSTYPLAGGGYAVLSGTSMATPYVAGAAALLIQAR--HGKLSPAELR 258 (312)
T ss_pred --CCccCCCCCCCCCcCccEEcCC------CCEEEeeeCCCCceEeeccHHHHHHHHHHHHHHHHHhc--CCCCCHHHHH
Confidence 6889999876 678887 45777776543 35678999 999999999999998 478888 7
Q ss_pred HHHHcccccCCCCCCCccccCCCCccCCccceeecCcCC
Q psy15973 227 HIVVAPARPANLRAPDWATNGVGRNVSHSFGYGLMDATA 265 (266)
Q Consensus 227 ~il~~TA~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~ 265 (266)
++|..||++....+..+..+. +.++.++|||+||+.+
T Consensus 259 ~~l~~ta~~~~~~~~~~~~~~--~~~~~~~G~G~vn~~~ 295 (312)
T cd07489 259 DLLASTAKPLPWSDGTSALPD--LAPVAQQGAGLVNAYK 295 (312)
T ss_pred HHHHHhCccccccCCCccccC--CCCHhhcCcceeeHHH
Confidence 889999998765544443322 4568999999999976
No 16
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.84 E-value=1.5e-20 Score=170.78 Aligned_cols=131 Identities=20% Similarity=0.205 Sum_probs=104.5
Q ss_pred CCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCC
Q psy15973 79 PGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATET 158 (266)
Q Consensus 79 ~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~ 158 (266)
.+.++|+|+|||..... ...+.+++.++..+ |+|+|+||||++... ....|+.++.+|+|++++.+
T Consensus 135 ~~~~~Iin~S~G~~~~~------~~~~~~ai~~a~~~-----GvivV~AAGN~g~~~---~~~~Pa~~~~vi~Vga~~~~ 200 (285)
T cd07496 135 PNPAKVINLSLGGDGAC------SATMQNAINDVRAR-----GVLVVVAAGNEGSSA---SVDAPANCRGVIAVGATDLR 200 (285)
T ss_pred CCCCeEEEeCCCCCCCC------CHHHHHHHHHHHHC-----CCEEEEECCCCCCCC---CccCCCCCCceEEEeccCCC
Confidence 46799999999986432 34567777777665 999999999998642 34556788999999999999
Q ss_pred CCCCCCCCCCCCceEEeeCCCCCCCcceEEeec--------------CCCeeecCCCC---hhhhhhhhcccCCCCCCCC
Q psy15973 159 GQVPWYSEACSSTLATTYSSGSSFEHQVVTTDL--------------HHDCTSNHTGL---APLAAGICAWPSRPNPASR 221 (266)
Q Consensus 159 g~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~--------------~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P 221 (266)
+++++||++|+.+++.||+.. |.++.. ....+..++|| ||+|||++||++|++ |
T Consensus 201 ~~~~~~S~~g~~vdi~apG~~------i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~---p 271 (285)
T cd07496 201 GQRASYSNYGPAVDVSAPGGD------CASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVN---P 271 (285)
T ss_pred CCcccccCCCCCCCEEeCCCC------ccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhC---C
Confidence 999999999999999999854 333322 12346678999 999999999999999 9
Q ss_pred CccH---HHHHHcc
Q psy15973 222 GVTC---RHIVVAP 232 (266)
Q Consensus 222 ~Lt~---q~il~~T 232 (266)
+||+ |++|+.|
T Consensus 272 ~lt~~~v~~~L~~t 285 (285)
T cd07496 272 SLTPAQIESLLQST 285 (285)
T ss_pred CCCHHHHHHHHHhC
Confidence 9999 5666544
No 17
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.84 E-value=1.7e-20 Score=169.74 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=115.5
Q ss_pred HHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccE
Q psy15973 70 VEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWT 149 (266)
Q Consensus 70 leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~v 149 (266)
.+|.....+ +.++|+|+|||...... ...+.+.++++++.++ |+|+|+||||++.. | ...|+..+++
T Consensus 96 ~~ai~~a~~-~g~~VIN~S~G~~~~~~---~~~~~l~~a~~~a~~~-----gvlvv~AaGN~g~~---~-~~~Pa~~~~v 162 (267)
T cd07476 96 ARAINLALE-QGAHIINISGGRLTQTG---EADPILANAVAMCQQN-----NVLIVAAAGNEGCA---C-LHVPAALPSV 162 (267)
T ss_pred HHHHHHHHH-CCCCEEEecCCcCCCCC---CCCHHHHHHHHHHHHC-----CCEEEEecCCCCCC---C-CCCcccCCce
Confidence 334433333 56999999999754321 2345677888877665 99999999999853 2 2335678999
Q ss_pred EEEeecCCCCCCCCCCCCCCCc---eEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCC-
Q psy15973 150 LSTSSATETGQVPWYSEACSST---LATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRG- 222 (266)
Q Consensus 150 I~Vga~~~~g~~~~yS~~g~~~---~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~- 222 (266)
|+|+|++.++++..||++|+.. +++||+ ..|+++.+.+. +..++|| ||+|||++|||||.+ |+
T Consensus 163 i~Vga~~~~~~~~~~s~~g~~~~~~~l~ApG------~~i~~~~~~~~-~~~~sGTS~AaP~vaG~aALl~s~~---~~~ 232 (267)
T cd07476 163 LAVGAMDDDGLPLKFSNWGADYRKKGILAPG------ENILGAALGGE-VVRRSGTSFAAAIVAGIAALLLSLQ---LRR 232 (267)
T ss_pred EEEEeecCCCCeeeecCCCCCCCCceEEecC------CCceeecCCCC-eEEeccHHHHHHHHHHHHHHHHHhh---hhh
Confidence 9999999999999999999764 689997 56888888776 4568999 999999999999999 65
Q ss_pred ---ccH---HHHHHcccccCCCC
Q psy15973 223 ---VTC---RHIVVAPARPANLR 239 (266)
Q Consensus 223 ---Lt~---q~il~~TA~~~~~~ 239 (266)
|++ |++|..||++....
T Consensus 233 ~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 233 GAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred CCCCCHHHHHHHHHHhCccCCCc
Confidence 888 78899999998654
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.84 E-value=1.7e-20 Score=169.37 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=113.3
Q ss_pred HHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhc--ccCCCceEEEEecCCCCCCCCCCCCCCCCcc
Q psy15973 69 AVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTR--GREGKGSIFVWASGNGGRDHDNCNCDGYTNS 146 (266)
Q Consensus 69 ~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~--gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~ 146 (266)
.++|+.+..+ +.++|+++||+..... .....+.+++.+++++ +|..+|+|+|+||||++.... .+ ++..
T Consensus 113 ~~~ai~~a~~-~g~~Vin~S~g~~~~~----~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~--~~--pa~~ 183 (273)
T cd07485 113 VAAAIVYAAD-NGAVILQNSWGGTGGG----IYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEH--RF--PAAY 183 (273)
T ss_pred HHHHHHHHHH-cCCcEEEecCCCCCcc----ccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCC--CC--cccC
Confidence 3445444444 4789999999976431 1223567777777776 345579999999999986532 22 6788
Q ss_pred ccEEEEeecCCCCCCCCCCCCCCCceEEeeCCCCCCCcceEEeecC-----CCeeecCCCC---hhhhhhhhcccCCCCC
Q psy15973 147 IWTLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLH-----HDCTSNHTGL---APLAAGICAWPSRPNP 218 (266)
Q Consensus 147 ~~vI~Vga~~~~g~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~-----~~~~~~~sGT---aP~vAGv~AL~l~an~ 218 (266)
+.+|+|++++.+++++.||++|+.+++.||+.+ .|+++.+. ...+..++|| ||+|||++||++|++
T Consensus 184 ~~vi~V~a~~~~~~~~~~S~~g~~~~i~apG~~-----~i~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~- 257 (273)
T cd07485 184 PGVIAVAALDTNDNKASFSNYGRWVDIAAPGVG-----TILSTVPKLDGDGGGNYEYLSGTSMAAPHVSGVAALVLSKF- 257 (273)
T ss_pred CCeEEEEeccCCCCcCccccCCCceEEEeCCCC-----ccccccccccCCCCCCeEeeccHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999852 46666553 3456789999 999999999999999
Q ss_pred CCCC-ccH---HHHHHcc
Q psy15973 219 ASRG-VTC---RHIVVAP 232 (266)
Q Consensus 219 ~~P~-Lt~---q~il~~T 232 (266)
|+ |++ +++|+.|
T Consensus 258 --~~~~~~~~i~~~L~~T 273 (273)
T cd07485 258 --PDVFTPEQIRKLLEES 273 (273)
T ss_pred --CCCCCHHHHHHHHHhC
Confidence 99 999 5666654
No 19
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.83 E-value=2.4e-20 Score=173.31 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=118.6
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCC------------CCCCccc
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNC------------DGYTNSI 147 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~------------~~~~~~~ 147 (266)
+.++|+|+|||...... .....+.++++++..+ |+++|+||||++........ ..+...+
T Consensus 143 ~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~-----giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (346)
T cd07475 143 LGADVINMSLGSTAGFV---DLDDPEQQAIKRAREA-----GVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214 (346)
T ss_pred cCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhC-----CeEEEEeCCCCCccCccccCcccccCCCcceecCCccCC
Confidence 46889999999865432 2334667788777665 99999999999875432221 1234578
Q ss_pred cEEEEeecC------CCCCCCCCCCCCCCc------eEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcc
Q psy15973 148 WTLSTSSAT------ETGQVPWYSEACSST------LATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAW 212 (266)
Q Consensus 148 ~vI~Vga~~------~~g~~~~yS~~g~~~------~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL 212 (266)
.+|+|++++ ..+....||++|+.. +++||+ ..|+++...+. +..++|| ||+|||++||
T Consensus 215 ~~i~Vga~~~~~~~~~~~~~~~~S~~G~~~~~~~~pdi~apG------~~i~s~~~~~~-~~~~~GTS~AaP~VaG~aAL 287 (346)
T cd07475 215 DVLTVASANKKVPNPNGGQMSGFSSWGPTPDLDLKPDITAPG------GNIYSTVNDNT-YGYMSGTSMASPHVAGASAL 287 (346)
T ss_pred CceEEeecccccCCCCCCccCCCcCCCCCcccCcCCeEEeCC------CCeEEecCCCc-eEeeCcHHHHHHHHHHHHHH
Confidence 999999998 778888999999864 788987 46888877655 5678999 9999999999
Q ss_pred cCCCCCCC-CCccH-------HHHHHcccccCCCCCCCccccCCCC-ccCCccceeecCcCC
Q psy15973 213 PSRPNPAS-RGVTC-------RHIVVAPARPANLRAPDWATNGVGR-NVSHSFGYGLMDATA 265 (266)
Q Consensus 213 ~l~an~~~-P~Lt~-------q~il~~TA~~~~~~~~~w~~n~~g~-~~~~~~G~G~vna~~ 265 (266)
|+|+.+.. |.|++ |++|..||++.... +..+. .....+|+|+||+.+
T Consensus 288 l~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~ 343 (346)
T cd07475 288 VKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAK 343 (346)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc------CCCCccCCccccCcchhcHHH
Confidence 99983111 89988 34566677742211 11111 125677999999976
No 20
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=2.7e-20 Score=171.95 Aligned_cols=144 Identities=22% Similarity=0.208 Sum_probs=103.2
Q ss_pred CCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCC
Q psy15973 79 PGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATET 158 (266)
Q Consensus 79 ~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~ 158 (266)
.+.++|+|+|||..........++....+++.+++.+ .+|+++|+||||+|... +....|+.++.+|+|+|++..
T Consensus 129 ~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~---~~Gv~vV~AAGN~g~~~--~~~~~Pa~~~~vitVgA~~~~ 203 (311)
T cd07497 129 GPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVT---YTGVPIVSAAGNGGPGY--GTITAPGAASLAISVGAATNF 203 (311)
T ss_pred CCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHh---cCCCEEEEeCCCCCCCC--ccccCccCCCCeEEEEeccCC
Confidence 3679999999997643222222232234445544443 57999999999998642 334456788999999999854
Q ss_pred ---------------CCCCCCCCCCCCc------eEEeeCCCCCCCcceEEeecCC---------CeeecCCCC---hhh
Q psy15973 159 ---------------GQVPWYSEACSST------LATTYSSGSSFEHQVVTTDLHH---------DCTSNHTGL---APL 205 (266)
Q Consensus 159 ---------------g~~~~yS~~g~~~------~~~ap~~g~~~~~~I~st~~~~---------~~~~~~sGT---aP~ 205 (266)
++.+.||++||.. +++||+. .|+++.+.. ..|..++|| |||
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~g~~kPdv~ApG~------~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 277 (311)
T cd07497 204 DYRPFYLFGYLPGGSGDVVSWSSRGPSIAGDPKPDLAAIGA------FAWAPGRVLDSGGALDGNEAFDLFGGTSMATPM 277 (311)
T ss_pred cccchhhhccccCCCCCccccccCCCCcccCCCCceeccCc------ceEeecccCCCCcccCCCcceeeecchhhhhHH
Confidence 5677999999974 7889874 466654421 235679999 999
Q ss_pred hhhhhcccCCCCCC---CCCccH---HHHHHccc
Q psy15973 206 AAGICAWPSRPNPA---SRGVTC---RHIVVAPA 233 (266)
Q Consensus 206 vAGv~AL~l~an~~---~P~Lt~---q~il~~TA 233 (266)
|||++|||||+.|+ .|.|++ |.+|+.||
T Consensus 278 VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 278 TAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred HHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999999998832 126888 78888876
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.83 E-value=3.8e-20 Score=165.42 Aligned_cols=142 Identities=14% Similarity=0.129 Sum_probs=115.1
Q ss_pred chHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCcc
Q psy15973 67 TDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNS 146 (266)
Q Consensus 67 a~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~ 146 (266)
.+.++|+.+..+ +.++|++.|||... ....+.+++.++.++ |+++|+||||.+... + ..++.+
T Consensus 112 ~~~~~ai~~a~~-~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~-----gilvV~aaGN~g~~~--~--~~pa~~ 174 (260)
T cd07484 112 ADIANGIRYAAD-KGAKVINLSLGGGL-------GSTALQEAINYAWNK-----GVVVVAAAGNEGVSS--V--SYPAAY 174 (260)
T ss_pred HHHHHHHHHHHH-CCCeEEEecCCCCC-------CCHHHHHHHHHHHHC-----CCEEEEeCCCCCCCC--C--CCCCCC
Confidence 344455544444 46899999999864 234667777777665 999999999998743 2 345678
Q ss_pred ccEEEEeecCCCCCCCCCCCCCCCceEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCCc
Q psy15973 147 IWTLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRGV 223 (266)
Q Consensus 147 ~~vI~Vga~~~~g~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~L 223 (266)
+.+|+|++++.++++..||++|+.+++.||+. .|+++.+.+. +..++|| ||+|||++||+++++ | |
T Consensus 175 ~~vi~Vga~~~~~~~~~~s~~g~~~~~~apG~------~i~~~~~~~~-~~~~~GTS~Aap~vag~~Al~~~~~---p-~ 243 (260)
T cd07484 175 PGAIAVAATDQDDKRASFSNYGKWVDVSAPGG------GILSTTPDGD-YAYMSGTSMATPHVAGVAALLYSQG---P-L 243 (260)
T ss_pred CCeEEEEeeCCCCCcCCcCCCCCCceEEeCCC------CcEeecCCCC-EEEeeeHHHHHHHHHHHHHHHHhcC---C-C
Confidence 99999999999999999999999999999974 5777776654 5678999 999999999999999 9 9
Q ss_pred cH---HHHHHcccccC
Q psy15973 224 TC---RHIVVAPARPA 236 (266)
Q Consensus 224 t~---q~il~~TA~~~ 236 (266)
|+ +++|++||+++
T Consensus 244 t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 244 SASEVRDALKKTADDI 259 (260)
T ss_pred CHHHHHHHHHHhCccC
Confidence 99 78899999875
No 22
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.82 E-value=5.2e-20 Score=160.95 Aligned_cols=140 Identities=17% Similarity=0.210 Sum_probs=111.4
Q ss_pred hHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccc
Q psy15973 68 DAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSI 147 (266)
Q Consensus 68 ~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~ 147 (266)
+.++|+....+ ++++|+++|||.... ...+.++++++.++ |+|+|+||||++...+. ...++.++
T Consensus 84 ~l~~ai~~a~~-~~~~Vin~S~g~~~~-------~~~~~~~~~~a~~~-----giliv~aaGN~~~~~~~--~~~pa~~~ 148 (229)
T cd07477 84 DIIAGIEWAIE-NGMDIINMSLGGPSD-------SPALREAIKKAYAA-----GILVVAAAGNSGNGDSS--YDYPAKYP 148 (229)
T ss_pred HHHHHHHHHHH-CCCCEEEECCccCCC-------CHHHHHHHHHHHHC-----CCEEEEecCCCCCCCCC--ccCCCCCC
Confidence 34444444444 569999999997542 23456777777665 99999999999875433 22456889
Q ss_pred cEEEEeecCCCCCCCCCCCCCCCceEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCCcc
Q psy15973 148 WTLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRGVT 224 (266)
Q Consensus 148 ~vI~Vga~~~~g~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt 224 (266)
.+|+|++++.++++..||++|+.+++.+|+ ..|+++.+.+. +..++|| ||+|||++|||+|++ |+|+
T Consensus 149 ~vi~Vga~~~~~~~~~~s~~g~~~~~~apg------~~i~~~~~~~~-~~~~~GTS~Aap~vag~~All~~~~---~~~~ 218 (229)
T cd07477 149 SVIAVGAVDSNNNRASFSSTGPEVELAAPG------VDILSTYPNND-YAYLSGTSMATPHVAGVAALVWSKR---PELT 218 (229)
T ss_pred CEEEEEeecCCCCcCCccCCCCCceEEeCC------CCeEEecCCCC-EEEEccHHHHHHHHHHHHHHHHHhC---CCCC
Confidence 999999999999999999999999999997 45888877665 4568999 999999999999999 9999
Q ss_pred H---HHHHHcc
Q psy15973 225 C---RHIVVAP 232 (266)
Q Consensus 225 ~---q~il~~T 232 (266)
+ |.+|+.|
T Consensus 219 ~~~i~~~l~~t 229 (229)
T cd07477 219 NAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHhC
Confidence 9 6666654
No 23
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=8.6e-20 Score=162.61 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=113.2
Q ss_pred cchHHHHHhhccCC---CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCC
Q psy15973 66 VTDAVEARSLSLNP---GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDG 142 (266)
Q Consensus 66 va~~leA~aL~~~~---q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~ 142 (266)
....++|+.+..+. ..++|+++|||..... ......+.+++.++.++ |+++|+||||++.... ....
T Consensus 88 ~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~---~~~~~~~~~~~~~~~~~-----gilvv~aaGN~~~~~~--~~~~ 157 (264)
T cd07487 88 ESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDP---SYGEDPLCQAVERLWDA-----GIVVVVAAGNSGPGPG--TITS 157 (264)
T ss_pred HHHHHHHHHHHHhhccccCceEEEeccCCCCCC---CCCCCHHHHHHHHHHhC-----CCEEEEeCCCCCCCCC--ccCC
Confidence 34456665544443 3799999999987542 11123466777776664 9999999999987533 2344
Q ss_pred CCccccEEEEeecCCCCC----CCCCCCCCCC------ceEEeeCCCCCCCcceEEe--------ecCCCeeecCCCC--
Q psy15973 143 YTNSIWTLSTSSATETGQ----VPWYSEACSS------TLATTYSSGSSFEHQVVTT--------DLHHDCTSNHTGL-- 202 (266)
Q Consensus 143 ~~~~~~vI~Vga~~~~g~----~~~yS~~g~~------~~~~ap~~g~~~~~~I~st--------~~~~~~~~~~sGT-- 202 (266)
++..+++|+|+|++.+++ ++.||++|+. .+++||+ ..|++. ......+..++||
T Consensus 158 p~~~~~vi~Vga~~~~~~~~~~~~~~s~~G~~~~~~~~~di~apG------~~i~~~~~~~~~~~~~~~~~~~~~~GTS~ 231 (264)
T cd07487 158 PGNSPKVITVGAVDDNGPHDDGISYFSSRGPTGDGRIKPDVVAPG------ENIVSCRSPGGNPGAGVGSGYFEMSGTSM 231 (264)
T ss_pred cccCCCceEEEeccCCCCCCccccccccCCCCCCCCcCCCEEccc------cceEeccccccccCCCCCCceEeccccch
Confidence 668899999999999998 7999999975 4688997 456664 2233456778999
Q ss_pred -hhhhhhhhcccCCCCCCCCCccH---HHHHHcccc
Q psy15973 203 -APLAAGICAWPSRPNPASRGVTC---RHIVVAPAR 234 (266)
Q Consensus 203 -aP~vAGv~AL~l~an~~~P~Lt~---q~il~~TA~ 234 (266)
||+|||++||+||++ |+|++ |.+|+.||+
T Consensus 232 Aap~vaG~~All~~~~---p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 232 ATPHVSGAIALLLQAN---PILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHHHC---cCCCHHHHHHHHHhhcC
Confidence 999999999999999 99999 788888875
No 24
>KOG3526|consensus
Probab=99.81 E-value=6.7e-21 Score=175.64 Aligned_cols=114 Identities=39% Similarity=0.638 Sum_probs=86.7
Q ss_pred CCCCceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc--------ceeeeccCCC---------------
Q psy15973 1 GREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA--------DLTINFSLSP--------------- 57 (266)
Q Consensus 1 gr~g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~l~v~yss~~--------------- 57 (266)
||+|||+|||||||.||.. |+||||||..|+|||||.++-++|+.+ +|+.|||.++
T Consensus 298 grnglgsiyvwasgdgge~-ddcncdgyaasmwtisinsaindg~nahydescsstlastfsng~rnpetgvattdlyg~ 376 (629)
T KOG3526|consen 298 GRNGLGSIYVWASGDGGED-DDCNCDGYAASMWTISINSAINDGENAHYDESCSSTLASTFSNGGRNPETGVATTDLYGR 376 (629)
T ss_pred ccCCcccEEEEecCCCCCc-cccCCccchhheEEEEeehhhcCCccccccchhhHHHHHHhhcCCcCCCcceeeeccccc
Confidence 8999999999999999985 999999999999999999999999865 6888887642
Q ss_pred ----------CcccCCCCcchHHHHHh-hc-cCCCeeEEEeCCCCCCCC-----CCcccCchHHHHHHHHhhhhc
Q psy15973 58 ----------GVRMLDGDVTDAVEARS-LS-LNPGHIDIYSASWGPDDD-----GKTVDGPGELATRAFIEGVTR 115 (266)
Q Consensus 58 ----------g~~~~~g~va~~leA~a-L~-~~~q~IdV~S~SWG~~dd-----G~~~~g~g~l~s~Al~~gi~~ 115 (266)
..+-..|..++++||+. |. ++.||+.|++.+-..--| -|+++|.+..+.+-+.+++-.
T Consensus 377 ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvld 451 (629)
T KOG3526|consen 377 CTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLD 451 (629)
T ss_pred eecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeeccccccccc
Confidence 22233455566777776 55 456999999877443322 377787776666666666543
No 25
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.80 E-value=3.2e-19 Score=159.07 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=114.0
Q ss_pred cchHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCC-CCCCCC
Q psy15973 66 VTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNC-NCDGYT 144 (266)
Q Consensus 66 va~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~-~~~~~~ 144 (266)
..+.++|+.+..+ +.++|+++|||.... ...+.+++.+++.+ |+|+|+||||++...+.. .++...
T Consensus 106 ~~~~~~a~~~a~~-~~~~vin~S~G~~~~-------~~~~~~~~~~~~~~-----g~ivV~aaGN~g~~~~~~~~~p~~~ 172 (259)
T cd07473 106 TSDAIKAIDYAVD-MGAKIINNSWGGGGP-------SQALRDAIARAIDA-----GILFVAAAGNDGTNNDKTPTYPASY 172 (259)
T ss_pred HHHHHHHHHHHHH-CCCeEEEeCCCCCCC-------CHHHHHHHHHHHhC-----CCEEEEeCCCCCCCCCCCcCcCccc
Confidence 3455666654444 679999999998643 34567788888876 999999999999753321 122222
Q ss_pred ccccEEEEeecCCCCCCCCCCCCCC-CceEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCCCC
Q psy15973 145 NSIWTLSTSSATETGQVPWYSEACS-STLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPAS 220 (266)
Q Consensus 145 ~~~~vI~Vga~~~~g~~~~yS~~g~-~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~ 220 (266)
..+++|+|++++..+++..||++|+ .+++.+|+ ..++++.+... +..++|| ||+|||++||++|++
T Consensus 173 ~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~~apG------~~~~~~~~~~~-~~~~~GTS~AaP~vaG~~All~~~~--- 242 (259)
T cd07473 173 DLDNIISVAATDSNDALASFSNYGKKTVDLAAPG------VDILSTSPGGG-YGYMSGTSMATPHVAGAAALLLSLN--- 242 (259)
T ss_pred CCCCeEEEEecCCCCCcCcccCCCCCCcEEEecc------CCeEeccCCCc-EEEeccHhHHHHHHHHHHHHHHHhC---
Confidence 4588999999999999999999997 47899997 45777666554 5678999 999999999999999
Q ss_pred CCccH---HHHHHcccc
Q psy15973 221 RGVTC---RHIVVAPAR 234 (266)
Q Consensus 221 P~Lt~---q~il~~TA~ 234 (266)
|.||+ |++|..||+
T Consensus 243 ~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 243 PNLTAAQIKDAILSSAD 259 (259)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999 778888874
No 26
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.80 E-value=1.8e-19 Score=160.17 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=105.0
Q ss_pred chHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCcc
Q psy15973 67 TDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNS 146 (266)
Q Consensus 67 a~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~ 146 (266)
.+.++|+.+..+ +.++|+|+|||..... ...+.++++ .+.+ .+|+|+|+||||++.. ....++..
T Consensus 85 ~~~~~ai~~a~~-~~~~Vin~S~g~~~~~------~~~~~~~~~-~~~~---~~g~lvV~aAGN~g~~----~~~~pa~~ 149 (254)
T cd07490 85 SQIIAGMEWAVE-KDADVVSMSLGGTYYS------EDPLEEAVE-ALSN---QTGALFVVSAGNEGHG----TSGSPGSA 149 (254)
T ss_pred HHHHHHHHHHHh-CCCCEEEECCCcCCCC------CcHHHHHHH-HHHH---cCCCEEEEeCCCCCCC----CCCCCccC
Confidence 444555544444 6799999999986542 112333443 3332 3699999999999875 23445678
Q ss_pred ccEEEEeecCCCCCCCCCCCCCC-----------------CceEEeeCCCCCCCcceEE----eecCCCeeecCCCC---
Q psy15973 147 IWTLSTSSATETGQVPWYSEACS-----------------STLATTYSSGSSFEHQVVT----TDLHHDCTSNHTGL--- 202 (266)
Q Consensus 147 ~~vI~Vga~~~~g~~~~yS~~g~-----------------~~~~~ap~~g~~~~~~I~s----t~~~~~~~~~~sGT--- 202 (266)
+.+|+|+|++.++++.+|+++|. ..++++|+ ..|++ ....+ .+..++||
T Consensus 150 ~~vi~Vga~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~d~~apG------~~i~~~~~~~~~~~-~~~~~~GTS~A 222 (254)
T cd07490 150 YAALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPG------VDVYSARQGANGDG-QYTRLSGTSMA 222 (254)
T ss_pred CceeEEecccccCCccCccCCcccccccccCCCCCccCCcCceEEecc------CCeEccccCCCCCC-CeeecccHHHH
Confidence 99999999999999999998882 34556665 45666 33334 45678999
Q ss_pred hhhhhhhhcccCCCCCCCCCccH---HHHHHcccc
Q psy15973 203 APLAAGICAWPSRPNPASRGVTC---RHIVVAPAR 234 (266)
Q Consensus 203 aP~vAGv~AL~l~an~~~P~Lt~---q~il~~TA~ 234 (266)
||+|||++|||||++ |+|++ |++|+.||+
T Consensus 223 aP~vaG~aAl~~~~~---p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 223 APHVAGVAALLAAAH---PDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHC---CCCCHHHHHHHHHHhcC
Confidence 999999999999999 99999 788888874
No 27
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.80 E-value=1.4e-20 Score=168.81 Aligned_cols=173 Identities=20% Similarity=0.309 Sum_probs=121.2
Q ss_pred HHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCcccc
Q psy15973 69 AVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIW 148 (266)
Q Consensus 69 ~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~ 148 (266)
.++|+....+.+.++|++.|||.... .........+.++++++.+ +|+|+|+||||++..... ....|+.++.
T Consensus 92 ~~~ai~~~~~~~~~~Vin~S~G~~~~-~~~~~~~~~~~~~~~~~~~-----~g~l~v~aaGN~~~~~~~-~~~~Pa~~~~ 164 (282)
T PF00082_consen 92 LIEAIEYAVKNDGVDVINLSFGSNSG-PPDPSYSDILEEAIDYAEK-----KGILIVFAAGNNGPNDDR-NISFPASSPN 164 (282)
T ss_dssp HHHHHHHHHHHTTSSEEEECEEBEES-SSHSHHHHHHHHHHHHHHH-----TTEEEEEE--SSSSBTTB-TGEBTTTSTT
T ss_pred ccchhhhhhhccCCcccccccccccc-ccccccccccccccccccc-----cCcceeeccccccccccc-cccccccccc
Confidence 34444433324568999999988431 0000112234445554444 599999999998864321 0223455788
Q ss_pred EEEEeecCCCCCCCCCCCCCCCc-------eEEeeCCCCCCCcceEEeecCC--CeeecCCCC---hhhhhhhhcccCCC
Q psy15973 149 TLSTSSATETGQVPWYSEACSST-------LATTYSSGSSFEHQVVTTDLHH--DCTSNHTGL---APLAAGICAWPSRP 216 (266)
Q Consensus 149 vI~Vga~~~~g~~~~yS~~g~~~-------~~~ap~~g~~~~~~I~st~~~~--~~~~~~sGT---aP~vAGv~AL~l~a 216 (266)
+|+|++++.+++++.||++|+.. +++||+. .|.++.+.. .++..++|| ||+|||++||++|+
T Consensus 165 vi~Vg~~~~~~~~~~~s~~g~~~~~~~~~~di~a~G~------~i~~~~~~~~~~~~~~~~GTS~Aap~vag~~All~~~ 238 (282)
T PF00082_consen 165 VITVGAVDNNGQPASYSNYGGPSDDGRIKPDIAAPGG------NILSAVPGSDRGSYTSFSGTSFAAPVVAGAAALLLSK 238 (282)
T ss_dssp SEEEEEEETTSSBSTTSSBSTTETTCTTCEEEEEECS------SEEEEETTTESEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccc------cccccccccccccccccCcCCchHHHHHHHHHHHHHH
Confidence 99999999999999999998776 8999984 466665543 345678999 99999999999999
Q ss_pred CCCCCCccH---HHHHHcccccCCCCCCCccccCCCCccCCccceeecCcCC
Q psy15973 217 NPASRGVTC---RHIVVAPARPANLRAPDWATNGVGRNVSHSFGYGLMDATA 265 (266)
Q Consensus 217 n~~~P~Lt~---q~il~~TA~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~ 265 (266)
+ |+|++ +++|..||++.+.. + +..+++.||||++|+++
T Consensus 239 ~---p~~~~~~i~~~l~~ta~~~~~~------~--~~~~~~~~G~G~in~~~ 279 (282)
T PF00082_consen 239 Y---PNLTPAEIKALLINTADDLGST------N--GEGYDNSYGWGLINAEK 279 (282)
T ss_dssp S---TTSHHHHHHHHHHHHSBESSET------T--SSSSHHHHTTSBE-HHH
T ss_pred C---CCCCHHHHHHHHHHhCcccCcC------C--CCCCCCCccCChhCHHH
Confidence 9 99999 67899999987611 1 33468899999999864
No 28
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.80 E-value=6.3e-19 Score=161.13 Aligned_cols=177 Identities=16% Similarity=0.109 Sum_probs=106.1
Q ss_pred hHHHHHhhccCCCeeEEEeCCCCCCCCC-----CcccCchHHHHHHHHhhh-----------hcccCCCceEEEEecCCC
Q psy15973 68 DAVEARSLSLNPGHIDIYSASWGPDDDG-----KTVDGPGELATRAFIEGV-----------TRGREGKGSIFVWASGNG 131 (266)
Q Consensus 68 ~~leA~aL~~~~q~IdV~S~SWG~~ddG-----~~~~g~g~l~s~Al~~gi-----------~~gr~g~G~i~V~AAGN~ 131 (266)
..++|+.+..+ +.++|+|+|||...++ |..........+.+...+ .+.+..+|+|+|+||||+
T Consensus 90 ~i~~ai~~a~~-~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~ 168 (297)
T cd07480 90 GILAGIQWAVA-NGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNE 168 (297)
T ss_pred HHHHHHHHHHH-cCCCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCC
Confidence 34444443334 4679999999986533 322211111112211111 223467899999999999
Q ss_pred CCCCCCCCCCCC-CccccEEEEeecCCCCCCCCCCCC----CCCceEEeeCCCCCCCcceEEeecCCCeeecCCCC---h
Q psy15973 132 GRDHDNCNCDGY-TNSIWTLSTSSATETGQVPWYSEA----CSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---A 203 (266)
Q Consensus 132 g~~~~~~~~~~~-~~~~~vI~Vga~~~~g~~~~yS~~----g~~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---a 203 (266)
+.....+.+... ...+.++.|.+++..++...|++. ...+++.||+ ..|+++.+.+. +..++|| |
T Consensus 169 g~~~~~~~~~~~~~~~~~~~~V~~V~~~~~~~~~~~~~~~~~~~~dv~ApG------~~i~s~~~~~~-~~~~sGTS~Aa 241 (297)
T cd07480 169 SQRPAGIPPVGNPAACPSAMGVAAVGALGRTGNFSAVANFSNGEVDIAAPG------VDIVSAAPGGG-YRSMSGTSMAT 241 (297)
T ss_pred CCCCCCCCCccCccccccccEEEEECCCCCCCCccccCCCCCCceEEEeCC------CCeEeecCCCc-EEEeCcHHHHH
Confidence 875443333222 223344444444444444444333 3568899997 56888877766 5678999 9
Q ss_pred hhhhhhhcccCCCCCCCCCccH---HHHHH----cccccCCCCCCCccccCCCCccCCccceeecCcCC
Q psy15973 204 PLAAGICAWPSRPNPASRGVTC---RHIVV----APARPANLRAPDWATNGVGRNVSHSFGYGLMDATA 265 (266)
Q Consensus 204 P~vAGv~AL~l~an~~~P~Lt~---q~il~----~TA~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~ 265 (266)
|+|||++||+||++ |+|++ +++|+ .+.+....... -...+|+|++++.+
T Consensus 242 P~VaG~aAll~~~~---p~~~~~~~~~~l~~~l~~~~~~~~~~~~----------~~~~~g~G~~~~~~ 297 (297)
T cd07480 242 PHVAGVAALWAEAL---PKAGGRALAALLQARLTAARTTQFAPGL----------DLPDRGVGLGLAPA 297 (297)
T ss_pred HHHHHHHHHHHHhC---cccCHHHHHHHHHHHHhhcccCCCCCCC----------ChhhcCCceeecCC
Confidence 99999999999999 99998 44444 22221111111 14678899988764
No 29
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.79 E-value=7.4e-19 Score=153.71 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=107.0
Q ss_pred HHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCcccc
Q psy15973 69 AVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIW 148 (266)
Q Consensus 69 ~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~ 148 (266)
.++|+....+ +.++|+|+|||..... ..+.+.+++.++.++ |+|+|+||||++... . + |+..+.
T Consensus 80 ~~~ai~~a~~-~~v~Vin~S~G~~~~~-----~~~~~~~~~~~a~~~-----g~l~V~aagN~~~~~-~--~--Pa~~~~ 143 (222)
T cd07492 80 LEKALRACVE-NDIRIVNLSLGGPGDR-----DFPLLKELLEYAYKA-----GGIIVAAAPNNNDIG-T--P--PASFPN 143 (222)
T ss_pred HHHHHHHHHH-CCCCEEEeCCCCCCCC-----cCHHHHHHHHHHHHC-----CCEEEEECCCCCCCC-C--C--CccCCc
Confidence 4445444343 5789999999986432 224567788877775 999999999998642 1 1 567899
Q ss_pred EEEEeecCCCCCCCCCCCCCCCceEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCCccH
Q psy15973 149 TLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRGVTC 225 (266)
Q Consensus 149 vI~Vga~~~~g~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt~ 225 (266)
||+|++.+.++....| ++.+.+.+|+ .+|+++.+.+. +..++|| ||+|||++|||||++ |+||+
T Consensus 144 vi~V~~~~~~~~~~~~---~~~~~~~apg------~~i~~~~~~~~-~~~~~GTS~Aap~vaG~~All~~~~---p~l~~ 210 (222)
T cd07492 144 VIGVKSDTADDPKSFW---YIYVEFSADG------VDIIAPAPHGR-YLTVSGNSFAAPHVTGMVALLLSEK---PDIDA 210 (222)
T ss_pred eEEEEecCCCCCcccc---cCCceEEeCC------CCeEeecCCCC-EEEeccHHHHHHHHHHHHHHHHHhC---CCCCH
Confidence 9999999988776554 6778899997 56888877765 5678999 999999999999999 99999
Q ss_pred ---HHHHHcccc
Q psy15973 226 ---RHIVVAPAR 234 (266)
Q Consensus 226 ---q~il~~TA~ 234 (266)
|++|++||+
T Consensus 211 ~~v~~~L~~tA~ 222 (222)
T cd07492 211 NDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHhcC
Confidence 688888885
No 30
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.78 E-value=1e-18 Score=154.90 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=106.3
Q ss_pred CeeEEEeCCCCCCCCCCccc--------CchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCC-----CCCCcc
Q psy15973 80 GHIDIYSASWGPDDDGKTVD--------GPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNC-----DGYTNS 146 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~--------g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~-----~~~~~~ 146 (266)
++++|+++|||.....+... .....+.+.+..+.+ +|+++|+||||++...+.... ..++..
T Consensus 102 ~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~ 176 (267)
T cd04848 102 SGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAAN-----AGGLFVFAAGNDGQANPSLAAAALPYLEPELE 176 (267)
T ss_pred CCCeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhh-----CCeEEEEeCCCCCCCCCccccccccccCcccc
Confidence 57999999999976544321 123445556655554 499999999999875433221 112346
Q ss_pred ccEEEEeecCCCCCCCCC--CCCCCC---ceEEeeCCCCCCCcceEEeecC-CCeeecCCCC---hhhhhhhhcccCCCC
Q psy15973 147 IWTLSTSSATETGQVPWY--SEACSS---TLATTYSSGSSFEHQVVTTDLH-HDCTSNHTGL---APLAAGICAWPSRPN 217 (266)
Q Consensus 147 ~~vI~Vga~~~~g~~~~y--S~~g~~---~~~~ap~~g~~~~~~I~st~~~-~~~~~~~sGT---aP~vAGv~AL~l~an 217 (266)
+.+|+|++++.++....| |++|.. ..+.||+ ..|+++.+. ...+..++|| ||+|||++||++|++
T Consensus 177 ~~vi~Vga~~~~~~~~~~~~s~~~~~~~~~~~~apG------~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~ 250 (267)
T cd04848 177 GGWIAVVAVDPNGTIASYSYSNRCGVAANWCLAAPG------ENIYSTDPDGGNGYGRVSGTSFAAPHVSGAAALLAQKF 250 (267)
T ss_pred CCEEEEEEecCCCCcccccccccchhhhhheeecCc------CceeecccCCCCcccccceeEchHHHHHHHHHHHHHHC
Confidence 789999999999999999 999864 3567786 468888773 3446778999 999999999999999
Q ss_pred CCCCCccH---HHHHHcccc
Q psy15973 218 PASRGVTC---RHIVVAPAR 234 (266)
Q Consensus 218 ~~~P~Lt~---q~il~~TA~ 234 (266)
|+|++ |.+|+.||+
T Consensus 251 ---p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 251 ---PWLTADQVRQTLLTTAT 267 (267)
T ss_pred ---CCCCHHHHHHHHHhhcC
Confidence 99999 788888885
No 31
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.78 E-value=7e-19 Score=159.28 Aligned_cols=155 Identities=21% Similarity=0.095 Sum_probs=104.3
Q ss_pred hHHHHHhhccCCCeeEEEeCCCCCCCCCCcc----cCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCC-----
Q psy15973 68 DAVEARSLSLNPGHIDIYSASWGPDDDGKTV----DGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNC----- 138 (266)
Q Consensus 68 ~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~----~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~----- 138 (266)
+.++|+....+ +.++|+|+|||........ ...-..+.+++.++.+ +|+|+|+||||+|...++.
T Consensus 94 ~~~~ai~~a~~-~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~-----~g~lvv~AAGN~g~~~~~~~~~~~ 167 (294)
T cd07482 94 WIIKAIIDAAD-DGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKS-----KGSIVVAAAGNDGLDVSNKQELLD 167 (294)
T ss_pred HHHHHHHHHHH-CCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHH-----CCCEEEEeCCCCCccccccccccc
Confidence 44455444334 5699999999975322111 1111234455554443 5999999999999654221
Q ss_pred -------------CCCCCCccccEEEEeecCCCCCCCCCCCCCC-CceEEeeCCCCC-C-----C----------cceEE
Q psy15973 139 -------------NCDGYTNSIWTLSTSSATETGQVPWYSEACS-STLATTYSSGSS-F-----E----------HQVVT 188 (266)
Q Consensus 139 -------------~~~~~~~~~~vI~Vga~~~~g~~~~yS~~g~-~~~~~ap~~g~~-~-----~----------~~I~s 188 (266)
....++..+.+|+|+|++.+++++.||++|. .+++++|+.... + . ..+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~~~S~~g~~~~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (294)
T cd07482 168 FLSSGDDFSVNGEVYDVPASLPNVITVSATDNNGNLSSFSNYGNSRIDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILT 247 (294)
T ss_pred ccccccccccCCcceecccccCceEEEEeeCCCCCcCccccCCCCcceEECCCCCcccccccCccccccccccccceeee
Confidence 3345567899999999999999999999985 577888876431 0 0 00122
Q ss_pred eecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCCccH-H---HHHHcc
Q psy15973 189 TDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRGVTC-R---HIVVAP 232 (266)
Q Consensus 189 t~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt~-q---~il~~T 232 (266)
+...+ .+..++|| ||+|||++|||||++ |.|++ + ++|.+|
T Consensus 248 ~~~~~-~~~~~~GTS~AaP~VaG~aAll~~~~---p~~~~~~~v~~~L~~T 294 (294)
T cd07482 248 TAPEG-GYAYMYGTSLAAPKVSGALALIIDKN---PLKKPPDEAIRILYNT 294 (294)
T ss_pred cccCC-ceEeecchhhhhHHHHHHHHHHHHHC---CCCCcHHHHHHHHhhC
Confidence 23333 45678999 999999999999999 99998 4 555544
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.75 E-value=3.6e-18 Score=152.90 Aligned_cols=135 Identities=19% Similarity=0.151 Sum_probs=102.1
Q ss_pred HHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCcccc
Q psy15973 69 AVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIW 148 (266)
Q Consensus 69 ~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~ 148 (266)
.++|+.+..+ +.++|+|+||+...... .......+.++++++.++ |+|+|+||||++...+. .+..++..+.
T Consensus 91 i~~Ai~~Ai~-~gadIIn~S~g~~~~~~-~~~~~~~l~~ai~~A~~~-----GilvvaaAGN~g~~~~~-~~~~pa~~~~ 162 (247)
T cd07491 91 AAKAIEAAVE-KKVDIISMSWTIKKPED-NDNDINELENAIKEALDR-----GILLFCSASDQGAFTGD-TYPPPAARDR 162 (247)
T ss_pred HHHHHHHHHH-CCCcEEEeeeecccccc-cccchHHHHHHHHHHHhC-----CeEEEEecCCCCCcCCC-cccCcccCCC
Confidence 3444444344 57899999999753211 112234677788877775 99999999999975431 2344567899
Q ss_pred EEEEeecCCCCCCCCCCCCCCCceEEeeCCCCCCCcceEEeecC--CCeeecCCCC---hhhhhhhhcccCCCC
Q psy15973 149 TLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLH--HDCTSNHTGL---APLAAGICAWPSRPN 217 (266)
Q Consensus 149 vI~Vga~~~~g~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~--~~~~~~~sGT---aP~vAGv~AL~l~an 217 (266)
||+|+|++.++++..||++++.+++.||+ .+|+++.+. .+.+..++|| ||||||++||+|+..
T Consensus 163 Vi~VgA~~~~g~~~~~S~~g~~vd~~APG------~~i~s~~~~~~~~~~~~~sGTS~Atp~vaGvaAL~l~~~ 230 (247)
T cd07491 163 IFRIGAADEDGGADAPVGDEDRVDYILPG------ENVEARDRPPLSNSFVTHTGSSVATALAAGLAALILYCV 230 (247)
T ss_pred eEEEEeeCCCCCCccccCCCCcceEEeCC------CceecCCcCCCCCCeeeeccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 568888651 3345678999 999999999999876
No 33
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.74 E-value=7.3e-18 Score=153.48 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=99.9
Q ss_pred CCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCC--------CCCccccEE
Q psy15973 79 PGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCD--------GYTNSIWTL 150 (266)
Q Consensus 79 ~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~--------~~~~~~~vI 150 (266)
.+.++|+|.|||....... .....+.+++.+... .+|+++|+||||++......... .++.++.+|
T Consensus 100 ~~~~~ViN~SlG~~~~~~~--~~~~~~~~~id~~a~----~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vI 173 (291)
T cd04847 100 PDIVRVFNLSLGSPLPIDD--GRPSSWAAALDQLAA----EYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNAL 173 (291)
T ss_pred CCceeEEEEecCCCCCccC--CCCCcHHHHHHHHhc----cCCeEEEEECCCCCccccccccccccccccCCHHHhhhhe
Confidence 4557999999998643211 111123444443222 46999999999999764322211 246788999
Q ss_pred EEeecCCCCCCCCCCCCCCC--------------------ceEEeeCCCCCCCc---------ceEEe--ecCCCeeecC
Q psy15973 151 STSSATETGQVPWYSEACSS--------------------TLATTYSSGSSFEH---------QVVTT--DLHHDCTSNH 199 (266)
Q Consensus 151 ~Vga~~~~g~~~~yS~~g~~--------------------~~~~ap~~g~~~~~---------~I~st--~~~~~~~~~~ 199 (266)
+|||++.++.++.||+++.. .+++||++...... .++.+ ......+..+
T Consensus 174 tVgA~~~~~~~~~~s~~~~~~~~~~~~fs~~Gp~~~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T cd04847 174 TVGAITSDDDITDRARYSAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTV 253 (291)
T ss_pred eeeeeecCccCCCcccccccccccCCCccccCCCCCCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCccccc
Confidence 99999999999887776643 46889985421000 00111 1123346678
Q ss_pred CCC---hhhhhhhhcccCCCCCCCCCccH---HHHHHcccc
Q psy15973 200 TGL---APLAAGICAWPSRPNPASRGVTC---RHIVVAPAR 234 (266)
Q Consensus 200 sGT---aP~vAGv~AL~l~an~~~P~Lt~---q~il~~TA~ 234 (266)
+|| ||+|||++||++|++ |+||+ |.+|..||+
T Consensus 254 ~GTS~AaP~Vag~aAll~~~~---p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 254 GGTSFAAPLAARLAAGLFAEL---PELSPETIRALLIHSAE 291 (291)
T ss_pred ccchHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHhhcC
Confidence 999 999999999999999 99999 788888874
No 34
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.73 E-value=2.2e-17 Score=151.62 Aligned_cols=158 Identities=23% Similarity=0.305 Sum_probs=101.4
Q ss_pred CcccCCCCcchHHHHHhhccCCCeeEEEeCCCCCCCCC----Cc--ccCchHHHHHHHHhhhhcccCCCceEEEEecCCC
Q psy15973 58 GVRMLDGDVTDAVEARSLSLNPGHIDIYSASWGPDDDG----KT--VDGPGELATRAFIEGVTRGREGKGSIFVWASGNG 131 (266)
Q Consensus 58 g~~~~~g~va~~leA~aL~~~~q~IdV~S~SWG~~ddG----~~--~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~ 131 (266)
..++++......++|+....+ +.++|+|+|||..... |. .......+.++++++++ +|+++|+||||+
T Consensus 82 ~vkv~~~~~~~~~~ai~~a~~-~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~-----~Gi~vVaAAGN~ 155 (298)
T cd07494 82 GVKLGGPDLVNSVGAFKKAIS-LSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVA-----RGIVVVFSAGNG 155 (298)
T ss_pred EEEccCCCcHHHHHHHHHHHh-cCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHH-----CCcEEEEeCCCC
Confidence 344444333445555554444 5789999999975321 21 11112345666666655 499999999998
Q ss_pred CCCCCCCCCCCCCccccEEEEeec--CCCCCC--CCCC-CCCCC-------ceE----------------EeeCCCCCCC
Q psy15973 132 GRDHDNCNCDGYTNSIWTLSTSSA--TETGQV--PWYS-EACSS-------TLA----------------TTYSSGSSFE 183 (266)
Q Consensus 132 g~~~~~~~~~~~~~~~~vI~Vga~--~~~g~~--~~yS-~~g~~-------~~~----------------~ap~~g~~~~ 183 (266)
+. ..|+.+|+||+|+|+ +.++.. .+|+ .+.+. .++ .||+
T Consensus 156 ~~-------~~Pa~~p~viaVga~~~~~~g~~~~~~~~~~~~s~~~~g~~~pd~~~~~g~~~~~~~~~~~~APG------ 222 (298)
T cd07494 156 GW-------SFPAQHPEVIAAGGVFVDEDGARRASSYASGFRSKIYPGRQVPDVCGLVGMLPHAAYLMLPVPPG------ 222 (298)
T ss_pred CC-------CcCCCCCCEEEEEeEeccCCCcccccccccCcccccCCCCccCccccccCcCCcccccccccCCC------
Confidence 74 236789999999998 445543 2222 12111 112 2454
Q ss_pred cceEE--------eecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCCccH---HHHHHcccccCCC
Q psy15973 184 HQVVT--------TDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRGVTC---RHIVVAPARPANL 238 (266)
Q Consensus 184 ~~I~s--------t~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt~---q~il~~TA~~~~~ 238 (266)
..|.+ +.+.+. |..++|| ||||||++|||+|++ |.|++ +++|.+||+++..
T Consensus 223 ~~i~~~~~~~~~~~~~~~~-y~~~sGTS~Aap~vaG~aAll~~~~---p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 223 SQLDRSCAAFPDGTPPNDG-WGVFSGTSAAAPQVAGVCALMLQAN---PGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cceeccccCCCCCCCCCCC-eEeeccchHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCcccCC
Confidence 33432 223333 5678999 999999999999999 99999 7889999987654
No 35
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.73 E-value=1.7e-17 Score=150.28 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=102.0
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCC
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETG 159 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g 159 (266)
+.++|+++|||..... ......+++.+.+.+ .+|+++|+||||++..... ....++..+++|+|+|++..+
T Consensus 114 ~~~~Vin~S~G~~~~~-----~~~~~~~~~~~~~~~---~~g~lvV~aAGN~g~~~~~-~~~~pa~~~~vi~Vga~~~~~ 184 (293)
T cd04842 114 AGARISSNSWGSPVNN-----GYTLLARAYDQFAYN---NPDILFVFSAGNDGNDGSN-TIGSPATAKNVLTVGASNNPS 184 (293)
T ss_pred hCCEEEeccCCCCCcc-----ccchHHHHHHHHHHh---CCCeEEEEeCCCCCCCCCc-cccCcccccceEEEeeccCCC
Confidence 3589999999987542 112344555555543 2699999999999875432 134567889999999999998
Q ss_pred C---------------CCCCCCCCCCc------eEEeeCCCCCCCcceEEee--------cCCCeeecCCCC---hhhhh
Q psy15973 160 Q---------------VPWYSEACSST------LATTYSSGSSFEHQVVTTD--------LHHDCTSNHTGL---APLAA 207 (266)
Q Consensus 160 ~---------------~~~yS~~g~~~------~~~ap~~g~~~~~~I~st~--------~~~~~~~~~sGT---aP~vA 207 (266)
. +..||++|+.. +++||+ ..|+++. ....++..++|| ||+||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~S~~G~~~~~~~~pdv~ApG------~~i~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Va 258 (293)
T cd04842 185 VSNGEGGLGQSDNSDTVASFSSRGPTYDGRIKPDLVAPG------TGILSARSGGGGIGDTSDSAYTSKSGTSMATPLVA 258 (293)
T ss_pred cccccccccccCCCCccccccCcCCCCCCCcCCCEECCC------CCeEeccCCCCCCCCCChhheeecCcHHHHHHHHH
Confidence 8 88999999875 789997 3566664 223456778999 99999
Q ss_pred hhhcccCCCCCC--CC---CccH---HHHHHcccc
Q psy15973 208 GICAWPSRPNPA--SR---GVTC---RHIVVAPAR 234 (266)
Q Consensus 208 Gv~AL~l~an~~--~P---~Lt~---q~il~~TA~ 234 (266)
|++|||+|++|+ .| ..++ |.+|..||+
T Consensus 259 G~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 259 GAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999999721 12 3333 677877774
No 36
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.72 E-value=3.3e-17 Score=146.81 Aligned_cols=129 Identities=18% Similarity=0.121 Sum_probs=92.8
Q ss_pred CeeEEEeCCCCCCCCCC---cccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCC-CCCCCCCccccEEEEeec
Q psy15973 80 GHIDIYSASWGPDDDGK---TVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDN-CNCDGYTNSIWTLSTSSA 155 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~---~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~-~~~~~~~~~~~vI~Vga~ 155 (266)
+.++|+|+|||.....- ...+.. .+.+++.+...+ +|+++|+||||+|...+. .....|+..+.+|+|+|+
T Consensus 84 ~gv~VINmS~G~~~~~~~~~~~~~~~-~l~~aid~~a~~----~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~ 158 (247)
T cd07488 84 NNVKIINHSYGEGLKRDPRAVLYGYA-LLSLYLDWLSRN----YEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGST 158 (247)
T ss_pred CCceEEEeCCccCCCCCccccccccc-hHHHHHHHHHhh----CCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEe
Confidence 56899999999753221 011221 245555555443 499999999999974321 123456788999999999
Q ss_pred CCCCCCCCC---CCC--------CCCceEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccCCCCCCCC
Q psy15973 156 TETGQVPWY---SEA--------CSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPASR 221 (266)
Q Consensus 156 ~~~g~~~~y---S~~--------g~~~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P 221 (266)
+.+++++.+ |++ +..++++||+ ..|++ +.+. +..++|| ||||||++||||+++ |
T Consensus 159 d~~g~~~~~s~~sn~~~~~~~~~~~~~di~APG------~~i~s--~~~~-~~~~sGTSmAaP~VaG~aAlll~~~---p 226 (247)
T cd07488 159 DRNGDRFFASDVSNAGSEINSYGRRKVLIVAPG------SNYNL--PDGK-DDFVSGTSFSAPLVTGIIALLLEFY---D 226 (247)
T ss_pred cCCCCcceecccccccCCCCCCCCceeEEEEee------eeEEC--CCCc-eeeecccchHHHHHHHHHHHHHHHC---h
Confidence 999987654 433 4578899997 45766 4444 4568999 999999999999999 8
Q ss_pred CccH
Q psy15973 222 GVTC 225 (266)
Q Consensus 222 ~Lt~ 225 (266)
+++.
T Consensus 227 ~~~~ 230 (247)
T cd07488 227 RQYK 230 (247)
T ss_pred hhhh
Confidence 8875
No 37
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.72 E-value=4.5e-17 Score=155.14 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=99.7
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCC-ccccEEEEeecCC-
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYT-NSIWTLSTSSATE- 157 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~-~~~~vI~Vga~~~- 157 (266)
+.++|+|+|||.... |... + .+.+++.+.+.+ +|+++|+||||+|... |....|+ ..+.||+|||...
T Consensus 243 ~gadVIN~SlG~~~~-~~~~--~-~~~~~~~~~~~~----~GVlvVaAAGN~G~~~--~tv~~P~~~~~~VIsVGA~~~~ 312 (412)
T cd04857 243 TKCDLINMSYGEATH-WPNS--G-RIIELMNEAVNK----HGVIFVSSAGNNGPAL--STVGAPGGTTSSVIGVGAYVSP 312 (412)
T ss_pred cCCCEEEecCCcCCC-Cccc--h-HHHHHHHHHHHh----CCCEEEEECCCCCCCc--cccCCccccCCCeEEEcceecc
Confidence 468999999997532 2111 1 244556555543 6999999999999643 3333333 4689999999853
Q ss_pred -------------CCCCCCCCCCCCC------ceEEeeCCCCCCCcceEEeec-CCCeeecCCCC---hhhhhhhhcccC
Q psy15973 158 -------------TGQVPWYSEACSS------TLATTYSSGSSFEHQVVTTDL-HHDCTSNHTGL---APLAAGICAWPS 214 (266)
Q Consensus 158 -------------~g~~~~yS~~g~~------~~~~ap~~g~~~~~~I~st~~-~~~~~~~~sGT---aP~vAGv~AL~l 214 (266)
.+.+..||++||. ++++||+. .|.++.. ....+..++|| ||||||++||||
T Consensus 313 ~~~~~~y~~~~~~~~~~~~fSSrGP~~dG~~~pdI~APG~------~I~s~p~~~~~~~~~~sGTSmAaP~VAG~aALll 386 (412)
T cd04857 313 EMMAAEYSLREKLPGNQYTWSSRGPTADGALGVSISAPGG------AIASVPNWTLQGSQLMNGTSMSSPNACGGIALLL 386 (412)
T ss_pred CccccccccccccCCccccccccCCcccCCcCceEEeCCC------cEEEcccCCCCCeEEecccHHHHHHHHHHHHHHH
Confidence 4567889999997 56999973 4666532 22335678999 999999999998
Q ss_pred CC----CCCCCCccH---HHHHHcccccC
Q psy15973 215 RP----NPASRGVTC---RHIVVAPARPA 236 (266)
Q Consensus 215 ~a----n~~~P~Lt~---q~il~~TA~~~ 236 (266)
|+ + |+||+ |.+|..||+++
T Consensus 387 Sa~k~~~---~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 387 SGLKAEG---IPYTPYSVRRALENTAKKL 412 (412)
T ss_pred hhhhhcC---CCCCHHHHHHHHHHhCccC
Confidence 64 6 99999 78899999863
No 38
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.66 E-value=7.5e-16 Score=132.90 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=108.5
Q ss_pred hHHHHHhhccCCCeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccc
Q psy15973 68 DAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSI 147 (266)
Q Consensus 68 ~~leA~aL~~~~q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~ 147 (266)
..++|+....+.+.++|+++||+..... +...+.+++.+...+ +|+++|+|+||.+...... ...++..+
T Consensus 88 ~~~~ai~~~~~~~~~~iin~S~g~~~~~-----~~~~~~~~~~~~~~~----~~~i~V~aaGN~~~~~~~~-~~~p~~~~ 157 (241)
T cd00306 88 DIAAAIDYAAADQGADVINLSLGGPGSP-----PSSALSEAIDYALAK----LGVLVVAAAGNDGPDGGTN-IGYPAASP 157 (241)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCC-----CCHHHHHHHHHHHHh----cCeEEEEecCCCCCCCCCC-ccCCccCC
Confidence 3444444333246799999999986433 334567777777765 6999999999999753211 24566889
Q ss_pred cEEEEeecCCCCCCC-CCCCCCCCceEEeeCCCCCCCcceEEe-ecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCC
Q psy15973 148 WTLSTSSATETGQVP-WYSEACSSTLATTYSSGSSFEHQVVTT-DLHHDCTSNHTGL---APLAAGICAWPSRPNPASRG 222 (266)
Q Consensus 148 ~vI~Vga~~~~g~~~-~yS~~g~~~~~~ap~~g~~~~~~I~st-~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~ 222 (266)
.+|+|++++..+.+. .+++.+...++.+|+.. +.+. ......+..++|| ||+|||++||++|++ |+
T Consensus 158 ~vi~Vga~~~~~~~~~~~~~~~~~~~~~apg~~------~~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~---~~ 228 (241)
T cd00306 158 NVIAVGAVDRDGTPASPSSNGGAGVDIAAPGGD------ILSSPTTGGGGYATLSGTSMAAPIVAGVAALLLSAN---PD 228 (241)
T ss_pred ceEEEEecCcCCCccCCcCCCCCCceEEeCcCC------ccCcccCCCCCeEeeccHHHHHHHHHHHHHHHHHHC---CC
Confidence 999999999999998 99999999999999854 2221 2223346778999 999999999999999 99
Q ss_pred ccH---HHHHHc
Q psy15973 223 VTC---RHIVVA 231 (266)
Q Consensus 223 Lt~---q~il~~ 231 (266)
|++ |.+|..
T Consensus 229 ~~~~~~~~~l~~ 240 (241)
T cd00306 229 LTPAQVKAALLS 240 (241)
T ss_pred CCHHHHHHHHhh
Confidence 999 445543
No 39
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.65 E-value=4e-16 Score=143.19 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=89.0
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCC
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETG 159 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g 159 (266)
++++|+|+|||..... .....+..++.++.+ +|+++|+||||+|... ...+...|++|+|++++
T Consensus 172 ~g~~Vin~S~G~~~~~----~~~~~~~~~~~~a~~-----~gilvV~aAGN~g~~~----~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 172 DGVDVISYSIGGGSPD----PYEDPIAIAFLHAVE-----AGIFVAASAGNSGPGA----STVPNVAPWVTTVAAST--- 235 (307)
T ss_pred cCCCEEEeCCCCCCCC----cccCHHHHHHHHHHh-----CCCEEEEECCCCCCCC----CcccCCCCCeEEEEecc---
Confidence 5789999999986421 112244555555544 5999999999998431 23345678999999998
Q ss_pred CCCCCCCCCCCceEEeeCCCCCCCcceEEeec---------CCCeeecCCCC---hhhhhhhhcccCCCCCCCCCccH--
Q psy15973 160 QVPWYSEACSSTLATTYSSGSSFEHQVVTTDL---------HHDCTSNHTGL---APLAAGICAWPSRPNPASRGVTC-- 225 (266)
Q Consensus 160 ~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~---------~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~Lt~-- 225 (266)
...++++|+. .|+++.+ ....+..++|| ||+|||++|||+|++ |+||+
T Consensus 236 ---------~~~di~apG~------~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~---p~~t~~~ 297 (307)
T cd04852 236 ---------LKPDIAAPGV------DILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAH---PDWSPAA 297 (307)
T ss_pred ---------CccceeeccC------ceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHC---CCCCHHH
Confidence 3456778863 4555433 12345678999 999999999999999 99999
Q ss_pred -HHHHHcccc
Q psy15973 226 -RHIVVAPAR 234 (266)
Q Consensus 226 -q~il~~TA~ 234 (266)
|++|+.||+
T Consensus 298 v~~~L~~tA~ 307 (307)
T cd04852 298 IKSALMTTAY 307 (307)
T ss_pred HHHHHHHhcC
Confidence 788999885
No 40
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.61 E-value=6.8e-15 Score=142.49 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=80.2
Q ss_pred ccccEEEEeecCCCCC-CCCCCCCCCC------ceEEeeCCCCCCCcceEEeecCCCeeecCCCC---hhhhhhhhcccC
Q psy15973 145 NSIWTLSTSSATETGQ-VPWYSEACSS------TLATTYSSGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPS 214 (266)
Q Consensus 145 ~~~~vI~Vga~~~~g~-~~~yS~~g~~------~~~~ap~~g~~~~~~I~st~~~~~~~~~~sGT---aP~vAGv~AL~l 214 (266)
..+.+|+|+|++.+.. .+.||++|+. .+++||+ ..|+++.+.+.| ..++|| ||||||++|||+
T Consensus 342 ~~~~vitVga~~~~~~~~~~~Ss~G~~~~~~~kpdi~APG------~~i~s~~~~~~~-~~~sGTS~Aap~vaG~aALl~ 414 (455)
T cd07478 342 TARSVITVGAYNQNNNSIAIFSGRGPTRDGRIKPDIAAPG------VNILTASPGGGY-TTRSGTSVAAAIVAGACALLL 414 (455)
T ss_pred CCCCcEEEEEEeCCCCcccCccCCCcCCCCCcCceEEecC------CCEEEeecCCcE-EeeCcHHHHHHHHHHHHHHHH
Confidence 4567999999998754 8999999987 7899997 579999888774 668999 999999999999
Q ss_pred CCCC---CCCCccH---HHHHHcccccCCCCCCCccccCCCCccCCcccee
Q psy15973 215 RPNP---ASRGVTC---RHIVVAPARPANLRAPDWATNGVGRNVSHSFGYG 259 (266)
Q Consensus 215 ~an~---~~P~Lt~---q~il~~TA~~~~~~~~~w~~n~~g~~~~~~~G~G 259 (266)
|..| +.|.|++ +.+|.+||++.... . .+++++|||
T Consensus 415 ~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~-~---------~pn~~~GyG 455 (455)
T cd07478 415 QWGIVRGNDPYLYGEKIKTYLIRGARRRPGD-E---------YPNPEWGYG 455 (455)
T ss_pred HhchhccCCCCCCHHHHHHHHHHhCccCCCC-C---------CCCCCCCCC
Confidence 9874 2467788 78899999987522 1 138899998
No 41
>KOG1153|consensus
Probab=99.45 E-value=6e-14 Score=132.11 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=97.0
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCC
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETG 159 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g 159 (266)
+.-.|.+.|.|.. ....+.-|+..+++. |++|+.||||+.. |.|++. |+.+..+|+|||+|.++
T Consensus 316 ~k~sv~NlSlGg~--------~S~aLn~AV~~A~~~-----Gi~fa~AAGNe~e--DAC~~S-Pass~~aITVGAst~~D 379 (501)
T KOG1153|consen 316 GKKSVANLSLGGF--------RSAALNMAVNAASER-----GIHFAVAAGNEHE--DACNSS-PASSKKAITVGASTKND 379 (501)
T ss_pred CCCeEEEEecCCc--------ccHHHHHHHHHHhhc-----CeEEEEcCCCcch--hhhccC-cccccccEEeccccccc
Confidence 3456677776653 134567788888887 9999999999975 678764 78899999999999999
Q ss_pred CCCCCCCCCCCceEEeeCCCCCCCcceEEeecCC-CeeecCCCC---hhhhhhhhcccCCCC
Q psy15973 160 QVPWYSEACSSTLATTYSSGSSFEHQVVTTDLHH-DCTSNHTGL---APLAAGICAWPSRPN 217 (266)
Q Consensus 160 ~~~~yS~~g~~~~~~ap~~g~~~~~~I~st~~~~-~~~~~~sGT---aP~vAGv~AL~l~an 217 (266)
+++.|||+|++|++-||| ..|.|++.++ ..+...+|| +|||||++|..|+..
T Consensus 380 ~iA~FSN~G~CVdiFAPG------v~IlSs~iGs~~at~ilSGTSMasPhvaG~aAy~ls~~ 435 (501)
T KOG1153|consen 380 TIAFFSNWGKCVDIFAPG------VNILSSWIGSNNATAILSGTSMASPHVAGLAAYFLSLG 435 (501)
T ss_pred chhhhcCccceeeeecCc------hhhhhhhhcCccchheeecccccCcchhhhHHHhhhcC
Confidence 999999999999999997 6799998764 345678999 999999999999998
No 42
>KOG3525|consensus
Probab=99.19 E-value=5.9e-12 Score=121.03 Aligned_cols=124 Identities=39% Similarity=0.592 Sum_probs=95.3
Q ss_pred CCCCceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc--------ceeeeccCCC---------------
Q psy15973 1 GREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA--------DLTINFSLSP--------------- 57 (266)
Q Consensus 1 gr~g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~l~v~yss~~--------------- 57 (266)
||.|+|+|||||+|||+..+|+|+||+|+++|||++++++++.+.++ .++++|++..
T Consensus 169 g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~~~~~p~y~~~C~~~~~s~~s~~~~~~~~~~~~~~~~~c 248 (431)
T KOG3525|consen 169 GRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQCGKKPQYRERCASCLASTYSSGGPTEECIVCTDPRHSC 248 (431)
T ss_pred cccCCCCeeEEEecCccccccccccccccCcceecccccccccCCCccccccccccccccccCCCCcceeeeecCCCccc
Confidence 79999999999999999999999999999999999999999999976 3567776532
Q ss_pred ---------CcccCCCCcchHHHHHh-hc-cCCCeeEEEeCCCCCC-CCCCcccCchHHHHHHHHhhhhcccCCCceEEE
Q psy15973 58 ---------GVRMLDGDVTDAVEARS-LS-LNPGHIDIYSASWGPD-DDGKTVDGPGELATRAFIEGVTRGREGKGSIFV 125 (266)
Q Consensus 58 ---------g~~~~~g~va~~leA~a-L~-~~~q~IdV~S~SWG~~-ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V 125 (266)
+.++..++++++++|+. |+ .+.|++.+.++.|... ...|..++.+..+++...++... .+..+.
T Consensus 249 ~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~----~~~~~~ 324 (431)
T KOG3525|consen 249 TEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLD----AKALVS 324 (431)
T ss_pred cccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccC----cchhhh
Confidence 33444455666677766 54 3448999999998764 34788888888777777766654 455544
Q ss_pred Eec
Q psy15973 126 WAS 128 (266)
Q Consensus 126 ~AA 128 (266)
.+.
T Consensus 325 ~~~ 327 (431)
T KOG3525|consen 325 CAK 327 (431)
T ss_pred hhc
Confidence 444
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.16 E-value=3.4e-10 Score=106.73 Aligned_cols=178 Identities=15% Similarity=0.070 Sum_probs=102.1
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCC-------CCCCCCccccEEEE
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNC-------NCDGYTNSIWTLST 152 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~-------~~~~~~~~~~vI~V 152 (266)
..++|+|+|||.....+. ......+.++++++..+ |+++|+||||+|...... ....++.+|+|++|
T Consensus 118 ~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~-----GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sV 191 (361)
T cd04056 118 NLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQ-----GITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAV 191 (361)
T ss_pred CCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhC-----CeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeee
Confidence 478999999998654322 11223566677777766 999999999999754311 23456789999999
Q ss_pred eecCCCCCCCCCCC---------------CCCCceEEeeCC----------------CCCCCcceEEe-ecC-------C
Q psy15973 153 SSATETGQVPWYSE---------------ACSSTLATTYSS----------------GSSFEHQVVTT-DLH-------H 193 (266)
Q Consensus 153 ga~~~~g~~~~yS~---------------~g~~~~~~ap~~----------------g~~~~~~I~st-~~~-------~ 193 (266)
|+++.......... -|-+.....|.- ..+..++|... ++. .
T Consensus 192 Ggt~~~~~~~~~~~~~~~~~~~~~~~~SGGG~S~~f~~P~yQ~~~~~~~~~~~~~~~~gR~~PDVaa~a~~~~g~~i~~~ 271 (361)
T cd04056 192 GGTTLYTGGTGSSAESTVWSSEGGWGGSGGGFSNYFPRPSYQSGAVLGLPPSGLYNGSGRGVPDVAANADPGTGYLVVVN 271 (361)
T ss_pred ecccccCCCcccccccccccccCCcccccCCcCCCCCCChhhhhcccCCCCCCCCCCCCCcCCeeecccCCCCCEEEEEC
Confidence 99998765542111 111111111110 00001222211 111 1
Q ss_pred CeeecCCCC---hhhhhhhhcccCCCCC--CCCCccH--H--HHHHcc----cccCCCCCC------CccccCCCCccCC
Q psy15973 194 DCTSNHTGL---APLAAGICAWPSRPNP--ASRGVTC--R--HIVVAP----ARPANLRAP------DWATNGVGRNVSH 254 (266)
Q Consensus 194 ~~~~~~sGT---aP~vAGv~AL~l~an~--~~P~Lt~--q--~il~~T----A~~~~~~~~------~w~~n~~g~~~~~ 254 (266)
.......|| ||++||++|||.|++. .+|.|-+ - +-+..+ -+++..... +| .++..||.
T Consensus 272 g~~~~~gGTS~aaP~~Ag~~Al~n~~~~~~g~~~lG~~np~LY~~~~~~~~~f~Dit~G~N~~~~~~g~---~A~~GwD~ 348 (361)
T cd04056 272 GQWYLVGGTSAAAPLFAGLIALINQARLAAGKPPLGFLNPLLYQLAATAPSAFNDITSGNNGGCGGAGY---PAGPGWDP 348 (361)
T ss_pred CeEEeeCCccHHHHHHHHHHHHHHHHhhhcCCCCccccCHHHhhCccccCCCceecCCCCCCCCCCCCc---CCCCCccc
Confidence 224457999 9999999999999983 1244444 1 222222 111211111 12 13345899
Q ss_pred ccceeecCcCCC
Q psy15973 255 SFGYGLMDATAM 266 (266)
Q Consensus 255 ~~G~G~vna~~~ 266 (266)
..|+|.+|..+|
T Consensus 349 vTGlGtp~~~~l 360 (361)
T cd04056 349 VTGLGTPNFAKL 360 (361)
T ss_pred ccCCCCCChHhh
Confidence 999999998775
No 44
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6e-09 Score=98.71 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=97.9
Q ss_pred eEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCcc--ccEEEEeecCCCC
Q psy15973 82 IDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNS--IWTLSTSSATETG 159 (266)
Q Consensus 82 IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~--~~vI~Vga~~~~g 159 (266)
.++++.|++.. ...........++.+++.. +++++|+|+||.+..........+..+ +.+|+|++++...
T Consensus 245 ~~~in~s~g~~----~~~~~~~~~~~a~~~~~~~----g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~~~ 316 (508)
T COG1404 245 ADVINLSLGGS----LSDSASPALGDALAAAANA----GGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSD 316 (508)
T ss_pred CcEEEecCCCC----ccccccHHHHHHHHHHHHc----CCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCCCC
Confidence 78999998875 1112334556666666665 459999999999875421111122334 4999999999999
Q ss_pred CCCCCCCCCC--CceEEeeCCCCCCCcceEEeecCCC-eeecCCCC---hhhhhhhhcccCCCCCCCC-CccH---HHHH
Q psy15973 160 QVPWYSEACS--STLATTYSSGSSFEHQVVTTDLHHD-CTSNHTGL---APLAAGICAWPSRPNPASR-GVTC---RHIV 229 (266)
Q Consensus 160 ~~~~yS~~g~--~~~~~ap~~g~~~~~~I~st~~~~~-~~~~~sGT---aP~vAGv~AL~l~an~~~P-~Lt~---q~il 229 (266)
.++.||++|. .+.+.+|+....... ...+.+... .+..++|| +|+++|++||+++.+ | .+++ +..+
T Consensus 317 ~~~~~s~~g~~~~~~~~apg~~i~~~~-~~~~~~~~~~~~~~~~Gts~a~p~v~g~aal~~~~~---~~~~~~~~~~~~~ 392 (508)
T COG1404 317 TVASFSNDGSPTGVDIAAPGVNILSLS-AVNTLPGDGADYVTLSGTSMAAPHVSGVAALVLSAN---PNELTPAQVRNLI 392 (508)
T ss_pred ccccccccCCCCCcceeCCCccccccc-cceeeeCCccceEeeccccccccHHHHHHHHHHccC---cccCCHHHHHHHH
Confidence 9999999998 588999985421000 122444443 36778999 899999999999999 9 7888 3344
Q ss_pred Hcccc
Q psy15973 230 VAPAR 234 (266)
Q Consensus 230 ~~TA~ 234 (266)
..++.
T Consensus 393 ~~~~~ 397 (508)
T COG1404 393 VTTAG 397 (508)
T ss_pred hhccc
Confidence 45544
No 45
>KOG1114|consensus
Probab=98.86 E-value=6.2e-09 Score=105.57 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=95.1
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCC-
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATET- 158 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~- 158 (266)
..+||+|+|+|.. ..|.-.| + +-+-+.+.+.+ +|+|+|.+|||.|+-.-...+++=. ...||.|||--.-
T Consensus 368 ~~vDiINmSyGE~-a~~pn~G--R-viEl~~e~vnK----r~vI~VsSAGN~GPaltTVGaPggt-TssvIgVGAYVsp~ 438 (1304)
T KOG1114|consen 368 HNVDIINMSYGED-AHLPNSG--R-VIELLRELVNK----RGVIYVSSAGNNGPALTTVGAPGGT-TSSVIGVGAYVSPG 438 (1304)
T ss_pred hcCCEEEeccCcc-CCCCCcc--h-HHHHHHHHhhh----ccEEEEEeCCCCCCceeeccCCCCc-ccceEeeeeecCHH
Confidence 4689999999974 3444332 2 34555566665 7999999999999865444444322 3489999985322
Q ss_pred -------------CCCCCCCCCCCCc------eEEeeCCCCCCCcceEEeecC--CCeeecCCCC---hhhhhhhhcccC
Q psy15973 159 -------------GQVPWYSEACSST------LATTYSSGSSFEHQVVTTDLH--HDCTSNHTGL---APLAAGICAWPS 214 (266)
Q Consensus 159 -------------g~~~~yS~~g~~~------~~~ap~~g~~~~~~I~st~~~--~~~~~~~sGT---aP~vAGv~AL~l 214 (266)
+..-.||++||+. .++||++. |.+ -|. -.-..-|+|| +|.++|.+||||
T Consensus 439 mm~a~y~~~e~vp~~~YtWsSRgP~~DG~lGVsi~APggA------iAs-VP~~tlq~~qLMNGTSMsSP~acG~IAllL 511 (1304)
T KOG1114|consen 439 MMQAEYSVREPVPSNPYTWSSRGPCLDGDLGVSISAPGGA------IAS-VPQYTLQNSQLMNGTSMSSPSACGAIALLL 511 (1304)
T ss_pred HHHhhhhhhccCCCCccccccCCCCcCCCcceEEecCCcc------ccC-CchhhhhhhhhhCCcccCCccccchHHHHH
Confidence 2334678999874 47888753 222 111 0113468999 999999999998
Q ss_pred CCC--CCCCCccH---HHHHHcccccCCCC
Q psy15973 215 RPN--PASRGVTC---RHIVVAPARPANLR 239 (266)
Q Consensus 215 ~an--~~~P~Lt~---q~il~~TA~~~~~~ 239 (266)
+.- .+ -..|+ +..|..||++.+.-
T Consensus 512 SgLKa~n-i~ytpysVrrAlenTa~~l~~i 540 (1304)
T KOG1114|consen 512 SGLKAQN-IPYTPYSVRRALENTATKLGDI 540 (1304)
T ss_pred HHHHhcC-CCCcHHHHHHHHHhcccccCcc
Confidence 643 11 45666 78899999988643
No 46
>KOG4266|consensus
Probab=98.86 E-value=7.4e-09 Score=101.29 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=100.5
Q ss_pred CeeEEEeCCCCCCCCCCcccCchHHHHHHHHhhhhcccCCCceEEEEecCCCCCCCCCCCCCCCCccccEEEEeecCCCC
Q psy15973 80 GHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETG 159 (266)
Q Consensus 80 q~IdV~S~SWG~~ddG~~~~g~g~l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~~~~~~~~~~~~vI~Vga~~~~g 159 (266)
..|||.+-|.|.+|- ++- +.+...++-..+ .+|+|-|+||+|+-... ...++....||.||.+|.++
T Consensus 290 ~kidvLNLSIGGPDf---mD~--PFVeKVwEltAn------NvIMvSAiGNDGPLYGT--LNNPaDQsDViGVGGIdfdD 356 (1033)
T KOG4266|consen 290 TKIDVLNLSIGGPDF---MDL--PFVEKVWELTAN------NVIMVSAIGNDGPLYGT--LNNPADQSDVIGVGGIDFDD 356 (1033)
T ss_pred hhcceEeeccCCccc---ccc--hHHHHHHhhccC------cEEEEEecCCCCcceee--cCCcccccceeeeccccccc
Confidence 468899999877652 221 233444443333 89999999999975433 34466777899999999999
Q ss_pred CCCCCCCCCCCceEEeeCCCCCCCcceEEe-------ecCCCeeecCCCC---hhhhhhhhcccCCCCCCCCC-ccH---
Q psy15973 160 QVPWYSEACSSTLATTYSSGSSFEHQVVTT-------DLHHDCTSNHTGL---APLAAGICAWPSRPNPASRG-VTC--- 225 (266)
Q Consensus 160 ~~~~yS~~g~~~~~~ap~~g~~~~~~I~st-------~~~~~~~~~~sGT---aP~vAGv~AL~l~an~~~P~-Lt~--- 225 (266)
..+.||++|-.++-- |.+-..-+++|+|- +...+|- ..||| +|.|||+++|+.+.-...-+ |.|
T Consensus 357 ~IA~FSSRGMtTWEL-P~GYGRmkpDiVtYG~~v~GS~v~~GCr-~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASm 434 (1033)
T KOG4266|consen 357 HIASFSSRGMTTWEL-PHGYGRMKPDIVTYGRDVMGSKVSTGCR-SLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASM 434 (1033)
T ss_pred hhhhhccCCcceeec-CCcccccCCceEeeccccccCcccccch-hccCCcccchhhhceeeeEeeeheehhhccCHHHH
Confidence 999999999766542 44333345666653 3346674 58999 99999999999984322233 344
Q ss_pred HHHHHcccccCCC
Q psy15973 226 RHIVVAPARPANL 238 (266)
Q Consensus 226 q~il~~TA~~~~~ 238 (266)
++.|.+.|.+.+.
T Consensus 435 KQaLiegA~kLpg 447 (1033)
T KOG4266|consen 435 KQALIEGAAKLPG 447 (1033)
T ss_pred HHHHHhHHhhCCC
Confidence 7888888888763
No 47
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=97.76 E-value=3.2e-05 Score=70.28 Aligned_cols=46 Identities=67% Similarity=1.215 Sum_probs=43.3
Q ss_pred CCCceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 2 REGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 2 r~g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
|++||.|+|+|+||.|...++|+++.|.++++.|+|++++.+|+++
T Consensus 174 ~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~g~~~ 219 (297)
T cd04059 174 RNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTANGVRA 219 (297)
T ss_pred CCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCCCCCc
Confidence 5679999999999999988999999999999999999999999865
No 48
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=95.35 E-value=0.018 Score=50.53 Aligned_cols=42 Identities=29% Similarity=0.624 Sum_probs=34.9
Q ss_pred CCCceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 2 REGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 2 r~g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
|.|+|.|+|||+||.|...+. -..++...|+|++++..++++
T Consensus 126 ~~~~gvliv~aaGN~g~~~~~----~pa~~~~vi~Vga~~~~~~~~ 167 (242)
T cd07498 126 RNGKGGVVLFAAGNSGRSVSS----GYAANPSVIAVAATDSNDARA 167 (242)
T ss_pred hhcCCeEEEEecCCCCCccCC----CCcCCCCeEEEEEeCCCCCcc
Confidence 557999999999999876443 566788999999999998754
No 49
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=94.57 E-value=0.036 Score=49.94 Aligned_cols=44 Identities=32% Similarity=0.332 Sum_probs=35.3
Q ss_pred CceeEEEEecCCCCCCCCCC------------------CCCCccceeeEEEeeecccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNC------------------NCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
.+|.|+|||+||.|...++. .++-...+...|+|++++.+++.+
T Consensus 143 ~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~ 204 (294)
T cd07482 143 SKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNNGNLS 204 (294)
T ss_pred HCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCCCCCcC
Confidence 47999999999999764333 455666778999999999998765
No 50
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=93.95 E-value=0.071 Score=47.70 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=35.2
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
.+|.++|||+||.+...+.|. +-..+....|+|++++.+++..
T Consensus 146 ~~gvlvV~aaGN~~~~~~~~~-~~pa~~~~vi~Vga~~~~~~~~ 188 (264)
T cd07481 146 AAGIFPVFAAGNDGPRCSTLN-APPANYPESFAVGATDRNDVLA 188 (264)
T ss_pred HCCCEEEEECCCCCCCCCCCc-CCCCcCCceEEEEecCCCCCCc
Confidence 479999999999998766665 4556778999999999998753
No 51
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=93.40 E-value=0.11 Score=46.74 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=34.1
Q ss_pred eeEEEEecCCCCCCCC-CCCCCCccceeeEEEeeeccccccccc
Q psy15973 6 GSIFVWASGNGGRDHD-NCNCDGYTNSIWTLSTSSATETGQKAD 48 (266)
Q Consensus 6 g~~~~~~~gn~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 48 (266)
|.++|+|+||.|...+ ......+..+...|+|++++..+++..
T Consensus 123 GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~~~ 166 (247)
T cd07488 123 EVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDRFF 166 (247)
T ss_pred CEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCcce
Confidence 9999999999997432 223456778888999999999998653
No 52
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=93.30 E-value=0.11 Score=46.76 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=33.1
Q ss_pred CCCceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 2 REGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 2 r~g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
|..+|.|+|||+||.+..... + -......|+|++++.+++++
T Consensus 158 ~~~~g~lvv~AaGN~g~~~~~--~--pa~~~~vi~V~a~~~~~~~~ 199 (273)
T cd07485 158 SPLDGGIVVFSAGNSYTDEHR--F--PAAYPGVIAVAALDTNDNKA 199 (273)
T ss_pred ccCCCeEEEEecCCCCCCCCC--C--cccCCCeEEEEeccCCCCcC
Confidence 566799999999999865333 2 45567899999999998865
No 53
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=93.11 E-value=0.12 Score=46.10 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=34.2
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
-+|.++|||+||.+.. ..+...-.....+.|+|+++++++++.
T Consensus 145 ~~gilvv~AAGN~g~~-~~~~~~~Pa~~~~vi~Vga~~~~~~~~ 187 (261)
T cd07493 145 SKGMLVVNSAGNEGST-QWKGIGAPADAENVLSVGAVDANGNKA 187 (261)
T ss_pred hCCeEEEEECCCCCCC-CCCcccCcccCCceEEEEEeccCCCCC
Confidence 3799999999999975 334555567789999999999988643
No 54
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.13 Score=54.99 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHHHhhhhcccCCCceEEEEecCCCCCCCCC----CCCCCCCccccEEEEee
Q psy15973 104 LATRAFIEGVTRGREGKGSIFVWASGNGGRDHDN----CNCDGYTNSIWTLSTSS 154 (266)
Q Consensus 104 l~s~Al~~gi~~gr~g~G~i~V~AAGN~g~~~~~----~~~~~~~~~~~vI~Vga 154 (266)
++.+-++.+..+ |+-+++|+|..|...+. -....++.+|+|.+||.
T Consensus 346 ~~d~l~~qasae-----GITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 346 LMDLLYEQASAE-----GITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHhhcc-----ceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 344455555555 99999999999976542 12244678999999999
No 55
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=92.36 E-value=0.16 Score=46.32 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=32.1
Q ss_pred CceeEEEEecCCCCCCCCCCCCC-Cccce--------eeEEEeeeccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCD-GYTNS--------IWTLSTSSATETG 44 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~g 44 (266)
.+|.++|+|+||.+...|+|.+. |+.++ ...|+|++++.+.
T Consensus 140 ~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~ 189 (277)
T cd04843 140 DLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT 189 (277)
T ss_pred hCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC
Confidence 58999999999999988888763 44322 3589999999764
No 56
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=91.38 E-value=0.25 Score=43.62 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=36.2
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeeccccccccceeeeccC
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKADLTINFSL 55 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~yss 55 (266)
+|.++|+|+||.+.....+. --.++.+.|+|++++.++........||+
T Consensus 137 ~gilvv~aaGN~~~~~~~~~--~p~~~~~vi~Vga~~~~~~~~~~~~~~s~ 185 (264)
T cd07487 137 AGIVVVVAAGNSGPGPGTIT--SPGNSPKVITVGAVDDNGPHDDGISYFSS 185 (264)
T ss_pred CCCEEEEeCCCCCCCCCccC--CcccCCCceEEEeccCCCCCCcccccccc
Confidence 78999999999987544323 34578899999999999986533344444
No 57
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=91.05 E-value=0.18 Score=45.73 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=35.1
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCc--------cceeeEEEeeeccccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGY--------TNSIWTLSTSSATETGQKAD 48 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~ 48 (266)
.+|.++|+|+||.+...++...... ..+...|+|++++.++....
T Consensus 134 ~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~ 186 (291)
T cd04847 134 EYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITD 186 (291)
T ss_pred cCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCC
Confidence 5799999999999987655444332 46778999999999988653
No 58
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=91.04 E-value=0.3 Score=43.16 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=31.9
Q ss_pred ceeEEEEecCCCCCCCCC-CCCCCccceeeEEEeeecccccccc
Q psy15973 5 KGSIFVWASGNGGRDHDN-CNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
+|.|||||+||.+...+. ..+-....+...|+|++++.++++.
T Consensus 147 ~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~~~~~ 190 (259)
T cd07473 147 AGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDALA 190 (259)
T ss_pred CCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCCCCcC
Confidence 589999999999976442 2222233457899999999998764
No 59
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=91.03 E-value=0.26 Score=44.86 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=32.7
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
+|.++|+|+||.+.. +....-.++...|+|++++.++++.
T Consensus 122 ~GvlvVaAAGN~g~~---~~~~~Pa~~~~vitVgA~~~~~~~~ 161 (275)
T cd05562 122 PGVLYFSSAGNDGQS---GSIFGHAAAPGAIAVGAVDYGNTPA 161 (275)
T ss_pred CCcEEEEeCCCCCCC---CCccCCCCCCCeEEEEeeccCCCcc
Confidence 599999999999973 3333457889999999999998765
No 60
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=90.83 E-value=0.28 Score=44.33 Aligned_cols=41 Identities=27% Similarity=0.420 Sum_probs=32.4
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
.+|.|+|||+||.+.. |+.+--.+....|+|++++.+++++
T Consensus 164 ~~GvivV~AAGN~g~~---~~~~~Pa~~~~vi~Vga~~~~~~~~ 204 (285)
T cd07496 164 ARGVLVVVAAGNEGSS---ASVDAPANCRGVIAVGATDLRGQRA 204 (285)
T ss_pred HCCCEEEEECCCCCCC---CCccCCCCCCceEEEeccCCCCCcc
Confidence 3799999999998764 3444445677899999999999865
No 61
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=89.85 E-value=0.43 Score=41.26 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=32.2
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
.+|.|+|||+||.+...+...+- ..+...|+|++++.++++.
T Consensus 122 ~~giliv~aaGN~~~~~~~~~~p--a~~~~vi~Vga~~~~~~~~ 163 (229)
T cd07477 122 AAGILVVAAAGNSGNGDSSYDYP--AKYPSVIAVGAVDSNNNRA 163 (229)
T ss_pred HCCCEEEEecCCCCCCCCCccCC--CCCCCEEEEEeecCCCCcC
Confidence 36899999999998765554322 3456789999999998764
No 62
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=89.64 E-value=0.38 Score=42.36 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=32.3
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccccee
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKADLT 50 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 50 (266)
.+|.|+|||+||.+.. ...+- ......|+|++++.+++...+.
T Consensus 126 ~~g~lvV~aAGN~g~~--~~~~p--a~~~~vi~Vga~~~~~~~~~~s 168 (254)
T cd07490 126 QTGALFVVSAGNEGHG--TSGSP--GSAYAALSVGAVDRDDEDAWFS 168 (254)
T ss_pred cCCCEEEEeCCCCCCC--CCCCC--ccCCceeEEecccccCCccCcc
Confidence 3799999999999875 22222 3456789999999999876543
No 63
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=89.50 E-value=0.42 Score=44.32 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=32.3
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
.+|.++|+|+||.|.. .|....-.++...|+|++++..+.++
T Consensus 166 ~~Gv~vV~AAGN~g~~--~~~~~~Pa~~~~vitVgA~~~~~~~~ 207 (311)
T cd07497 166 YTGVPIVSAAGNGGPG--YGTITAPGAASLAISVGAATNFDYRP 207 (311)
T ss_pred cCCCEEEEeCCCCCCC--CccccCccCCCCeEEEEeccCCcccc
Confidence 5899999999999863 33333445788999999999876554
No 64
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=89.43 E-value=0.38 Score=43.84 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=31.0
Q ss_pred CCCceeEEEEecCCCCCCCCCCCCCCccc-eeeEEEeeecccccc
Q psy15973 2 REGKGSIFVWASGNGGRDHDNCNCDGYTN-SIWTLSTSSATETGQ 45 (266)
Q Consensus 2 r~g~g~~~~~~~gn~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 45 (266)
+..+|.|+|||+||.+...+++.+.+... ..+.+.|.+++....
T Consensus 154 ~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~~~ 198 (297)
T cd07480 154 ALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGALGR 198 (297)
T ss_pred hhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCCCC
Confidence 36899999999999998777777665533 345555566555543
No 65
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=88.94 E-value=0.55 Score=41.13 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=33.3
Q ss_pred CceeEEEEecCCCCCCCCCCCC--CCcc---ceeeEEEeeeccccccccce
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNC--DGYT---NSIWTLSTSSATETGQKADL 49 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~g~~~~l 49 (266)
.+|.+||+|+||.+...+.... ..+. .....|+|++++.++.....
T Consensus 144 ~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~~~~~~ 194 (267)
T cd04848 144 NAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGTIASY 194 (267)
T ss_pred hCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCCCcccc
Confidence 5799999999999987665552 2221 23467999999999876533
No 66
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=88.93 E-value=0.51 Score=41.86 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=31.5
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
+|.|||+|+||.+... |.+-. .+.+.|+|++++.++++.
T Consensus 152 ~gilvV~aaGN~g~~~--~~~pa--~~~~vi~Vga~~~~~~~~ 190 (260)
T cd07484 152 KGVVVVAAAGNEGVSS--VSYPA--AYPGAIAVAATDQDDKRA 190 (260)
T ss_pred CCCEEEEeCCCCCCCC--CCCCC--CCCCeEEEEeeCCCCCcC
Confidence 7899999999998753 55543 467799999999998764
No 67
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=88.87 E-value=0.41 Score=42.52 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=30.4
Q ss_pred CceeEEEEecCCCCCCCCC-CCCCCccceeeEEEeeeccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDN-CNCDGYTNSIWTLSTSSATETGQK 46 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 46 (266)
.+|.|+|+|+||++...+. ..+.+...++ |+|++++.++++
T Consensus 136 ~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~v--i~Vg~~~~~~~~ 177 (282)
T PF00082_consen 136 KKGILIVFAAGNNGPNDDRNISFPASSPNV--ITVGAVDNNGQP 177 (282)
T ss_dssp HTTEEEEEE--SSSSBTTBTGEBTTTSTTS--EEEEEEETTSSB
T ss_pred ccCcceeecccccccccccccccccccccc--cccccccccccc
Confidence 3789999999998877654 6666666555 999999988764
No 68
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=88.13 E-value=0.61 Score=41.91 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=33.8
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
.+|.|+|||+||.+...+. ....-..+...|+|++++..++..
T Consensus 145 ~~g~lvV~aAGN~g~~~~~-~~~~pa~~~~vi~Vga~~~~~~~~ 187 (293)
T cd04842 145 NPDILFVFSAGNDGNDGSN-TIGSPATAKNVLTVGASNNPSVSN 187 (293)
T ss_pred CCCeEEEEeCCCCCCCCCc-cccCcccccceEEEeeccCCCccc
Confidence 3799999999999875443 244556788999999999998743
No 69
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=88.12 E-value=0.53 Score=42.14 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=32.6
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
-+|.|+|+|+||.|... +...-..+....|+|++++.+++++
T Consensus 126 ~~gi~vV~aaGN~g~~~--~~~~~Pa~~~~vi~Vga~~~~~~~~ 167 (255)
T cd07479 126 ANNIIMVSAIGNDGPLY--GTLNNPADQMDVIGVGGIDFDDNIA 167 (255)
T ss_pred HCCcEEEEEcCCCCCCc--ccccCcccCCCceEEeeeccCCccc
Confidence 37899999999998632 2234456778899999999988764
No 70
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=86.46 E-value=0.99 Score=38.26 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=34.6
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
+|.|||+|+||.+...... ..-...+...|+|++++..+...
T Consensus 131 ~~~i~V~aaGN~~~~~~~~-~~~p~~~~~vi~Vga~~~~~~~~ 172 (241)
T cd00306 131 LGVLVVAAAGNDGPDGGTN-IGYPAASPNVIAVGAVDRDGTPA 172 (241)
T ss_pred cCeEEEEecCCCCCCCCCC-ccCCccCCceEEEEecCcCCCcc
Confidence 4899999999999865443 56677889999999999988764
No 71
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=85.86 E-value=0.96 Score=40.00 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=30.4
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
+|.|+|+|+||.+.. .| ..--......|+|++++.++.+.
T Consensus 145 ~g~liV~aaGN~g~~--~~-~~~pa~~~~vi~Vga~~~~~~~~ 184 (255)
T cd04077 145 AGVVVVVAAGNSNQD--AC-NYSPASAPEAITVGATDSDDARA 184 (255)
T ss_pred CCCEEEEeCCCCCCC--CC-CcCccCCCceEEEeccCCCCCcc
Confidence 589999999999863 33 12224567899999999999754
No 72
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=85.75 E-value=1 Score=41.02 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=29.1
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCcc-------ceeeEEEeeeccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYT-------NSIWTLSTSSATETGQK 46 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~ 46 (266)
.+|.|+|||+||.|...|.+.+--+. ...-.|+|++++..++.
T Consensus 169 ~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~~~ 218 (291)
T cd07483 169 SKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYEN 218 (291)
T ss_pred hCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccCCc
Confidence 58999999999999765544321111 11346899999887653
No 73
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=85.06 E-value=0.95 Score=41.93 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=29.9
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccc------------eeeEEEeeecc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTN------------SIWTLSTSSAT 41 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 41 (266)
-+|.++|||+||.+...+......+.+ ....|+|++++
T Consensus 174 ~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~ 223 (346)
T cd07475 174 EAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASAN 223 (346)
T ss_pred hCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecc
Confidence 368999999999998777666655443 56789999987
No 74
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=83.24 E-value=1.4 Score=40.27 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.7
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecc
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSAT 41 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (266)
+|.++|||+||.+.....+ ..-..+..+.|+|++++
T Consensus 153 ~gv~iv~aaGN~g~~~~~~-~~~p~~~~~vi~Vga~~ 188 (312)
T cd07489 153 AGVVVTIAAGNDGERGPFY-ASSPASGRGVIAVASVD 188 (312)
T ss_pred CCCEEEEECCCCCCCCCCc-ccCCccCCCeEEEEEec
Confidence 5899999999998765444 34456788999999998
No 75
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=82.09 E-value=1.7 Score=38.39 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=28.8
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCcc-ceeeEEEeeecccccccc
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGYT-NSIWTLSTSSATETGQKA 47 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 47 (266)
+|.|+|+|+||.|..... .|- .....|+|++++.+++..
T Consensus 119 ~gilvv~AaGN~g~~~~~----~~Pa~~~~vi~V~a~~~~~~~~ 158 (239)
T cd05561 119 RGMVLVAAAGNDGPAAPP----LYPAAYPGVIAVTAVDARGRLY 158 (239)
T ss_pred CCCEEEEecCCCCCCCCc----cCcccCCCceEEEeecCCCCcc
Confidence 689999999998864221 122 346789999999998754
No 76
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=82.08 E-value=1.5 Score=39.46 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=27.2
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeeccc
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATE 42 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (266)
+|.|+|||+||.|...... .-...+.+.|+|++++.
T Consensus 148 ~gil~V~aAGN~g~~~~~~--~~pa~~~~~i~Vga~~~ 183 (295)
T cd07474 148 AGVVVVAAAGNSGPAPYTI--GSPATAPSAITVGASTV 183 (295)
T ss_pred cCCEEEEECCCCCCCCCcc--cCCCcCCCeEEEeeeec
Confidence 6899999999998653322 23456789999999873
No 77
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=79.49 E-value=3 Score=39.35 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=33.4
Q ss_pred ceeEEEEecCCCCCCCCCCC-------CCCccceeeEEEeeecccccccc
Q psy15973 5 KGSIFVWASGNGGRDHDNCN-------CDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
+|..+|+||||.|...+... .+--.+++|.++|++++......
T Consensus 152 ~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~~~ 201 (361)
T cd04056 152 QGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTGGT 201 (361)
T ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCCCc
Confidence 68999999999998644322 23457899999999999887654
No 78
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=78.28 E-value=2.5 Score=38.16 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=29.1
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccccccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 47 (266)
-+|.|+|+|+||.+.. |.. =-.+....|+|++++.+|.+.
T Consensus 136 ~~gvlvv~AaGN~g~~---~~~-~Pa~~~~vi~Vga~~~~~~~~ 175 (267)
T cd07476 136 QNNVLIVAAAGNEGCA---CLH-VPAALPSVLAVGAMDDDGLPL 175 (267)
T ss_pred HCCCEEEEecCCCCCC---CCC-CcccCCceEEEEeecCCCCee
Confidence 3789999999998842 221 013457799999999998653
No 79
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=78.01 E-value=3 Score=37.19 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=31.0
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCc-cceeeEEEeeecccccccc
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGY-TNSIWTLSTSSATETGQKA 47 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 47 (266)
||.|+|.|+||.+...+++- .+ ......|+|++++.+|++.
T Consensus 135 ~GilvvaaAGN~g~~~~~~~--~~pa~~~~Vi~VgA~~~~g~~~ 176 (247)
T cd07491 135 RGILLFCSASDQGAFTGDTY--PPPAARDRIFRIGAADEDGGAD 176 (247)
T ss_pred CCeEEEEecCCCCCcCCCcc--cCcccCCCeEEEEeeCCCCCCc
Confidence 79999999999987654221 11 3456799999999999764
No 80
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=69.32 E-value=5.3 Score=36.67 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=26.4
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecc--cccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSAT--ETGQ 45 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~ 45 (266)
.+|.++|+|+||.+.. + =.+..+.|+|++++ .+|.
T Consensus 143 ~~Gi~vVaAAGN~~~~-----~--Pa~~p~viaVga~~~~~~g~ 179 (298)
T cd07494 143 ARGIVVVFSAGNGGWS-----F--PAQHPEVIAAGGVFVDEDGA 179 (298)
T ss_pred HCCcEEEEeCCCCCCC-----c--CCCCCCEEEEEeEeccCCCc
Confidence 4799999999998742 2 35678899999984 4453
No 81
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=68.14 E-value=7.8 Score=33.38 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=25.8
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeeccccccc
Q psy15973 5 KGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQK 46 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 46 (266)
+|.|+|+|+||.+.... | - ....-.|+|++.+..+..
T Consensus 120 ~g~l~V~aagN~~~~~~-~--P--a~~~~vi~V~~~~~~~~~ 156 (222)
T cd07492 120 AGGIIVAAAPNNNDIGT-P--P--ASFPNVIGVKSDTADDPK 156 (222)
T ss_pred CCCEEEEECCCCCCCCC-C--C--ccCCceEEEEecCCCCCc
Confidence 48999999999876422 2 1 222347889998887754
No 82
>PTZ00262 subtilisin-like protease; Provisional
Probab=63.21 E-value=7.8 Score=39.59 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=25.8
Q ss_pred ceeEEEEecCCCCCCC------CCCCCCC---ccc-----eeeEEEeeecccc
Q psy15973 5 KGSIFVWASGNGGRDH------DNCNCDG---YTN-----SIWTLSTSSATET 43 (266)
Q Consensus 5 ~g~~~~~~~gn~~~~~------~~~~~~~---~~~-----~~~~~~~~~~~~~ 43 (266)
+|.|+|+|+||.+... +.|+.+. |-. -.-.|+|++++.+
T Consensus 462 kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d 514 (639)
T PTZ00262 462 KGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKD 514 (639)
T ss_pred CCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCC
Confidence 7999999999998642 2344332 211 1336999999764
No 83
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=58.93 E-value=11 Score=34.46 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=24.7
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSAT 41 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (266)
-+|.++|+|+||.|. +.+.+ -..+.+.|+|++++
T Consensus 202 ~~gilvV~aAGN~g~--~~~~~--~~~~~~vi~Vga~~ 235 (307)
T cd04852 202 EAGIFVAASAGNSGP--GASTV--PNVAPWVTTVAAST 235 (307)
T ss_pred hCCCEEEEECCCCCC--CCCcc--cCCCCCeEEEEecc
Confidence 478999999999883 22222 23466899999988
No 84
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.25 E-value=12 Score=30.98 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=28.6
Q ss_pred eecCCCC--hhhhhhhhcccCCCCCCCCCccHHHHHHccc
Q psy15973 196 TSNHTGL--APLAAGICAWPSRPNPASRGVTCRHIVVAPA 233 (266)
Q Consensus 196 ~~~~sGT--aP~vAGv~AL~l~an~~~P~Lt~q~il~~TA 233 (266)
...|.|- |++|.|.+|+++++. -..|+++|+....
T Consensus 71 ~~~F~gdSdA~ivrGL~aill~~~---~G~t~~eI~~~~~ 107 (144)
T COG2166 71 TLHFFGDSDARIVRGLLAILLAAY---SGKTAAEILAFDP 107 (144)
T ss_pred eEEEeccchhHHHHHHHHHHHHHH---cCCCHHHHHcCCH
Confidence 3445666 999999999999999 9999988876554
No 85
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=44.05 E-value=26 Score=34.01 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=24.8
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCccceeeEEEeeecccc
Q psy15973 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATET 43 (266)
Q Consensus 4 g~g~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (266)
.+|.+||+|+||.|.......+-+ ....-.|+|++....
T Consensus 274 ~~GVlvVaAAGN~G~~~~tv~~P~-~~~~~VIsVGA~~~~ 312 (412)
T cd04857 274 KHGVIFVSSAGNNGPALSTVGAPG-GTTSSVIGVGAYVSP 312 (412)
T ss_pred hCCCEEEEECCCCCCCccccCCcc-ccCCCeEEEcceecc
Confidence 479999999999985322212111 124568899987543
No 86
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=32.58 E-value=35 Score=28.51 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=22.3
Q ss_pred cceeeEEEeeeccccccccceeeecc
Q psy15973 29 TNSIWTLSTSSATETGQKADLTINFS 54 (266)
Q Consensus 29 ~~~~~~~~~~~~~~~g~~~~l~v~ys 54 (266)
.+-+|||+|.+.|..|+.....+.|+
T Consensus 121 ~~~~YtLtV~a~D~aGN~~~~si~F~ 146 (158)
T PF13750_consen 121 ADDSYTLTVSATDKAGNQSTKSISFS 146 (158)
T ss_pred CCCeEEEEEEEEecCCCEEEEEEEEE
Confidence 36699999999999999988777764
No 87
>PRK15019 CsdA-binding activator; Provisional
Probab=32.02 E-value=16 Score=30.38 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=23.5
Q ss_pred hhhhhhhhcccCCCCCCCCCccHHHHHHc
Q psy15973 203 APLAAGICAWPSRPNPASRGVTCRHIVVA 231 (266)
Q Consensus 203 aP~vAGv~AL~l~an~~~P~Lt~q~il~~ 231 (266)
|++|-|.+||+++.. -..|+++|+..
T Consensus 85 A~IvkGl~alL~~~~---~g~tp~eIl~~ 110 (147)
T PRK15019 85 GRIVRGLLAVLLTAV---EGKTAAELQAQ 110 (147)
T ss_pred cHHHHHHHHHHHHHH---cCCCHHHHHhc
Confidence 999999999999999 99999888753
No 88
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.07 E-value=21 Score=29.35 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=25.7
Q ss_pred CCCC--hhhhhhhhcccCCCCCCCCCccHHHHHHcc
Q psy15973 199 HTGL--APLAAGICAWPSRPNPASRGVTCRHIVVAP 232 (266)
Q Consensus 199 ~sGT--aP~vAGv~AL~l~an~~~P~Lt~q~il~~T 232 (266)
|.+. |++|-|++||+++.. -..|+++|+...
T Consensus 74 f~~dSDa~IvkGl~alL~~~~---~g~tp~eI~~~d 106 (138)
T TIGR03391 74 FYGDSEGRIVRGLLAVLLTAV---EGKTPEQLLAQD 106 (138)
T ss_pred EEecCccHHHHHHHHHHHHHH---cCCCHHHHHHCC
Confidence 3444 999999999999999 999998877543
No 89
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=26.30 E-value=23 Score=28.43 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=24.3
Q ss_pred CCCC--hhhhhhhhcccCCCCCCCCCccHHHHHHcc
Q psy15973 199 HTGL--APLAAGICAWPSRPNPASRGVTCRHIVVAP 232 (266)
Q Consensus 199 ~sGT--aP~vAGv~AL~l~an~~~P~Lt~q~il~~T 232 (266)
|.+. |+++-|++||+++.. -..|+++|+...
T Consensus 60 f~adSda~ivkGl~all~~~~---~g~t~~eI~~~~ 92 (125)
T PF02657_consen 60 FRADSDARIVKGLLALLLEVL---NGQTPEEILAFD 92 (125)
T ss_dssp EEEEESSHHHHHHHHHHHHHT---TT-BHHHHHHS-
T ss_pred EEecCccHHHHHHHHHHHHHH---cCCCHHHHHhCC
Confidence 4455 999999999999999 999997776443
No 90
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.85 E-value=24 Score=28.99 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=24.3
Q ss_pred hhhhhhhhcccCCCCCCCCCccHHHHHHcc
Q psy15973 203 APLAAGICAWPSRPNPASRGVTCRHIVVAP 232 (266)
Q Consensus 203 aP~vAGv~AL~l~an~~~P~Lt~q~il~~T 232 (266)
|++|-|.+||+++.. -.+|+++|+...
T Consensus 75 a~ivkGl~alL~~~~---~g~tp~eIl~~d 101 (138)
T PRK09296 75 AAIVKGLIAVVFILY---QQMTPQDIVNFD 101 (138)
T ss_pred cHHHHHHHHHHHHHH---cCCCHHHHHhCC
Confidence 999999999999999 999998887544
No 91
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=20.69 E-value=1.3e+02 Score=20.08 Aligned_cols=21 Identities=10% Similarity=0.313 Sum_probs=16.8
Q ss_pred CccccEEEEeecCCCCCCCCC
Q psy15973 144 TNSIWTLSTSSATETGQVPWY 164 (266)
Q Consensus 144 ~~~~~vI~Vga~~~~g~~~~y 164 (266)
+.=.+.|+|.++|..|.....
T Consensus 22 ~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 22 ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred CCccEEEEEEEEeCCCCCCCc
Confidence 344689999999999988654
Done!