RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15973
(266 letters)
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 190 bits (483), Expect = 9e-58
Identities = 149/212 (70%), Positives = 167/212 (78%), Gaps = 3/212 (1%)
Query: 58 GVRMLDGDVTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGR 117
GVRMLDG+VTDAVEARSL LNP HI IYSASWGP+DDGKTVDGP LA AF GV++GR
Sbjct: 116 GVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGR 175
Query: 118 EGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYS 177
G GSIFVWASGNGGR+HD+CNCDGYTNSI+TLS SSAT+ G VPWYSEACSSTLATTYS
Sbjct: 176 GGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYS 235
Query: 178 SGSSFEHQVVTTDLHHDCTSNHTG---LAPLAAGICAWPSRPNPASRGVTCRHIVVAPAR 234
SG+ E Q+VTTDL CT +HTG APLAAGI A N +H+VV ++
Sbjct: 236 SGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSK 295
Query: 235 PANLRAPDWATNGVGRNVSHSFGYGLMDATAM 266
PA+L A DWATNGVGR VSHS+GYGL+DA AM
Sbjct: 296 PAHLNADDWATNGVGRKVSHSYGYGLLDAGAM 327
Score = 51.6 bits (123), Expect = 8e-08
Identities = 36/48 (75%), Positives = 40/48 (83%)
Query: 1 GREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKAD 48
GR G GSIFVWASGNGGR+HD+CNCDGYTNSI+TLS SSAT+ G
Sbjct: 174 GRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPW 221
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 180 bits (458), Expect = 7e-54
Identities = 85/213 (39%), Positives = 125/213 (58%), Gaps = 6/213 (2%)
Query: 58 GVRMLDGDVTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGR 117
G+R+L GD+T EA SL DIYS SWGP DDG+ + GP +L +A ++GVT GR
Sbjct: 129 GIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGR 188
Query: 118 EGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYS 177
+ KG+I+V+ASGNGG DNCN DGYTNSI++++ + P YSE CS+ +A TYS
Sbjct: 189 DSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYS 248
Query: 178 SGSSFEHQVVTTDLHHDCTSNHTGL---APLAAGICAWPSRPNPASRGVTCRHIVVAPAR 234
SG + ++D++ C+++H G APLAAG+ NP +++ + A
Sbjct: 249 SG--SGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAV 306
Query: 235 PANL-RAPDWATNGVGRNVSHSFGYGLMDATAM 266
DW + +G+ SH +G+G +DA +
Sbjct: 307 GLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKL 339
Score = 54.3 bits (130), Expect = 1e-08
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 1 GREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKAD 48
GR+ KG+I+V+ASGNGG DNCN DGYTNSI++++ +
Sbjct: 187 GRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPP 234
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 117 bits (293), Expect = 4e-30
Identities = 46/282 (16%), Positives = 78/282 (27%), Gaps = 75/282 (26%)
Query: 58 GVRMLDGD----VTDAVEARSLSLNPGHIDIYSASWGPDD------------------DG 95
G +LD + D + A S +++ S+ +
Sbjct: 143 GFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNHSYRMSVVDPRSANSLDQSQLDRLFEQ 202
Query: 96 KTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGR-DHDNCNCDGYTNSIWTLSTSS 154
+T+ G +A G + G + +GNG + +N N D ++ W L S+
Sbjct: 203 QTLKAQGAAYIKAAGNGFNKI--AAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLVVSA 260
Query: 155 ATETGQVPWYSEACSSTLATTYSSGS-SFEHQVVTTDLH--------------------- 192
G YS S+ + + +VTTDL
Sbjct: 261 LNADGVRSSYSSVGSNIFLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNS 320
Query: 193 -----HDCTSNHTG---LAPLAAGICAWPSRPNPASRGVTCRHIVVAPARPANLRAPD-- 242
D G P +G A P R ++ A + +
Sbjct: 321 QLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVM 380
Query: 243 ------------------WATNGVGRNVSHSFGYGLMDATAM 266
W N G S ++G+GL+D
Sbjct: 381 VSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKA 422
Score = 45.3 bits (106), Expect = 1e-05
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 4 GKGSIFVWASGNGGR-DHDNCNCDGYTNSIWTLSTSSATETGQKAD 48
G + +GNG + +N N D ++ W L S+ G ++
Sbjct: 224 AAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLVVSALNADGVRSS 269
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.006
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 13/42 (30%)
Query: 71 EARSLS-LNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIE 111
E ++L L + +Y+ D P LA +A +E
Sbjct: 18 EKQALKKLQ-ASLKLYA----DDS------APA-LAIKATME 47
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 32.1 bits (72), Expect = 0.21
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 20/133 (15%)
Query: 58 GVRMLDG---------DVTDAVE-ARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATR 107
+ + DG + A+ L + ID+ + S+G + GEL
Sbjct: 300 SMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNE 359
Query: 108 AFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSAT--ETGQVPWYS 165
+ G ++V ++GN G + + + + + +
Sbjct: 360 VVNK--------YGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM 411
Query: 166 EACSSTLATTYSS 178
T++S
Sbjct: 412 REKLPGNVYTWTS 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.26
Identities = 42/281 (14%), Positives = 71/281 (25%), Gaps = 101/281 (35%)
Query: 68 DAVEARSLSLNPGHI------------------DIYSASWGPDDDGKTVD----GPGELA 105
DA R L+L+ G + + ++ +G D P EL
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 106 TR--AFIEG-VTRGREGKGSIFVWASGN-------GGRD-H--------DNCNCDGYTNS 146
+ ++ V + G+ + G D H +N T
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 147 I--------------WTLSTSSA----TETGQVPWY--------SEACSSTLATTYSSGS 180
+ + ++SA G ++ L Y +
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 181 SFEHQVVTT---------DLHHDCTSNHT-GLAPLAAGICAW---PS-RPN-------PA 219
++ D T GL I W PS P+ P
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-----ILEWLENPSNTPDKDYLLSIPI 236
Query: 220 SR---GVT--CRHIVVAPA---RPANLRAPDWATNGVGRNV 252
S GV ++V A P LR+ G + +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
>3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta
barrel, channel, protein-protein complex, activator,
nucleus; 2.40A {Schizosaccharomyces pombe}
Length = 207
Score = 30.5 bits (68), Expect = 0.46
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 18 RDHDNCNCDGYTNSIWTLSTSSATETGQKADLTINFSLSPGVRMLDGDVTDAVEA 72
HD + + N+ W++ +E ++ I + +G VT+ VE
Sbjct: 63 ESHDETDTEWSKNTQWSMYLEGNSEPKREDKCGIRPVNRAKLT--NGSVTEFVEK 115
>3e8v_A Possible transglutaminase-family protein; structural genomics,
unknown function, PSI-2, protein structure initiative;
2.40A {Bacteroides fragilis nctc 9343}
Length = 82
Score = 25.6 bits (56), Expect = 6.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 111 EGVTRGREGKGSIFVWASGNGG 132
G GKG + VWAS +G
Sbjct: 41 SGHASLTAGKGDMLVWASKDGR 62
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 26.5 bits (58), Expect = 9.3
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 55 LSPGVRMLDGDVTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVT 114
+ +L D+ D + L+ ++ + + PD+ K V L +
Sbjct: 40 THKDINILQKDIFDLTLSD---LSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSP 96
Query: 115 RGREGKGSIFVWASGNGGRDHD 136
R G+ + +G +
Sbjct: 97 RLLVVGGAASLQIDEDGNTLLE 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.418
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,140,849
Number of extensions: 241770
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 44
Length of query: 266
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,133,061
Effective search space: 719152614
Effective search space used: 719152614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.0 bits)