RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15973
(266 letters)
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 106 bits (263), Expect = 2e-27
Identities = 153/266 (57%), Positives = 176/266 (66%), Gaps = 3/266 (1%)
Query: 4 GKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKADLTINFSLSPGVRMLD 63
S V + D + ++ G + GVRMLD
Sbjct: 61 PGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYNARIGGVRMLD 120
Query: 64 GDVTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSI 123
G+VTDAVEARSL LNP HI IYSASWGP+DDGKTVDGP LA AF GV++GR G GSI
Sbjct: 121 GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSI 180
Query: 124 FVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGSSFE 183
FVWASGNGGR+HD+CNCDGYTNSI+TLS SSAT+ G VPWYSEACSSTLATTYSSG+ E
Sbjct: 181 FVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNE 240
Query: 184 HQVVTTDLHHDCTSNHTG---LAPLAAGICAWPSRPNPASRGVTCRHIVVAPARPANLRA 240
Q+VTTDL CT +HTG APLAAGI A N +H+VV ++PA+L A
Sbjct: 241 KQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA 300
Query: 241 PDWATNGVGRNVSHSFGYGLMDATAM 266
DWATNGVGR VSHS+GYGL+DA AM
Sbjct: 301 DDWATNGVGRKVSHSYGYGLLDAGAM 326
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 86.4 bits (212), Expect = 3e-20
Identities = 83/264 (31%), Positives = 125/264 (47%), Gaps = 6/264 (2%)
Query: 9 FVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQKADLTIN----FSLSPGVRMLDG 64
F D+ N ++ + + + + G+R+L G
Sbjct: 68 FCAEGSWDFNDNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGVGVGYNAKISGIRILSG 127
Query: 65 DVTDAVEARSLSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIF 124
D+T EA SL DIYS SWGP DDG+ + GP +L +A ++GVT GR+ KG+I+
Sbjct: 128 DITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIY 187
Query: 125 VWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATT-YSSGSSFE 183
V+ASGNGG DNCN DGYTNSI++++ + P YSE CS+ +A T S +
Sbjct: 188 VFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEYI 247
Query: 184 HQVVTTDLHHDCTSNHTGLAPLAAGICAWPSRPNPASRGVTCRHIVVAPARPANLRA-PD 242
H + + APLAAG+ NP +++ + A A D
Sbjct: 248 HSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGD 307
Query: 243 WATNGVGRNVSHSFGYGLMDATAM 266
W + +G+ SH +G+G +DA +
Sbjct: 308 WRDSAMGKKYSHRYGFGKIDAHKL 331
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp.,
AK.1 [TaxId: 1409]}
Length = 280
Score = 37.6 bits (86), Expect = 8e-04
Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 26/183 (14%)
Query: 84 IYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGY 143
IY+A G + ++ +E KGS+ V A+GN G Y
Sbjct: 121 IYAADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPA-SY 176
Query: 144 TNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTGLA 203
N I + + ++ +S + + T + S + +
Sbjct: 177 ENVIAVGAV---DQYDRLASFSNYGT----WVDVVAPGVDIVSTITGNRYAYMSGTSMAS 229
Query: 204 PLAAGICAWPSRPNPASRGVTCRHIVVAPARPANLRAPDWATNGVGRNVSHSFGYGLMDA 263
P AG+ A + + + R + A + F YG +++
Sbjct: 230 PHVAGLAALLASQGRNNIEI--RQAIEQTADKISGTGTY-------------FKYGRINS 274
Query: 264 TAM 266
Sbjct: 275 YNA 277
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg
[TaxId: 1423]}
Length = 274
Score = 34.9 bits (79), Expect = 0.006
Identities = 25/186 (13%), Positives = 48/186 (25%), Gaps = 20/186 (10%)
Query: 83 DIYSASWGPDDDGKTVDGPGELATRAF--IEGVTRGREGKGSIFVWASGNGGRDHDNCNC 140
I S +G V ++ +G + V A+GN G
Sbjct: 105 GIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTI 164
Query: 141 DGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHT 200
++ + +S + +G + T + +
Sbjct: 165 GYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATL----NGTS 220
Query: 201 GLAPLAAGICAWPSRPNPASRGVTCRHIVVAPARPANLRAPDWATNGVGRNVSHSFGYGL 260
+P AG A +P R+ + + A S +G GL
Sbjct: 221 MASPHVAGAAALILSKHPNLSASQVRNRLSSTATY--------------LGSSFYYGKGL 266
Query: 261 MDATAM 266
++ A
Sbjct: 267 INVEAA 272
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas
sp., sedolisin [TaxId: 306]}
Length = 369
Score = 34.2 bits (77), Expect = 0.013
Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 8/167 (4%)
Query: 15 NGGRDHDNCNCDGYTNSIWTLSTSSATETGQKADLTINFSLSPGVRMLDGDVTDAVEARS 74
G + + + D W L + S + A + F ++ T +A +
Sbjct: 62 QTGSSNGDYSDDQQGQGEWDLDSQSIVGSAGGAVQQLLFYMADQ---SASGNTGLTQAFN 118
Query: 75 LSLNPGHIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRD 134
+++ + + S G + DG + R F +G+ F +SG+ G
Sbjct: 119 QAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQ-----TFSVSSGDEGVY 173
Query: 135 HDNCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGSS 181
N ++ +S+ V + +S A + + +
Sbjct: 174 ECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWN 220
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 33.8 bits (76), Expect = 0.015
Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 22/146 (15%)
Query: 121 GSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGS 180
G + V ASGN G + ++ + + +S+ +
Sbjct: 144 GVLVVAASGNSGAGSISYPA----RYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNV 199
Query: 181 SFEHQVVTTDLHHDCTSNHTGLAPLAAGICAWPSRPNPASRGVTCRHIVVAPARPANLRA 240
+ T + + P AG A + NP+ V R+ + A
Sbjct: 200 QSTYPGSTYASLNGTSM----ATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--- 252
Query: 241 PDWATNGVGRNVSHSFGYGLMDATAM 266
++ +G GL++A A
Sbjct: 253 -----------STNLYGSGLVNAEAA 267
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans
[TaxId: 93466]}
Length = 671
Score = 33.5 bits (75), Expect = 0.026
Identities = 32/188 (17%), Positives = 52/188 (27%), Gaps = 15/188 (7%)
Query: 81 HIDIYSASWGPDDDGKTVDGPGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNC 140
+ + SWG T+ + A + V
Sbjct: 260 GAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAAL 319
Query: 141 DGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHT 200
D Y + SS ++ V ST+ S G ++ V + +
Sbjct: 320 DYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPAT-NGGTYDYYQ 378
Query: 201 G---LAPLAAGICAWPSRPNPASRGVTCRHIVVAPARPANLRAPDWATNGVGRNVSHSFG 257
G AP G+ A + P ++ R ++ A N D H G
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD-----------HDTG 427
Query: 258 YGLMDATA 265
YGL+ A
Sbjct: 428 YGLVKLDA 435
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens,
Novo/BPN' [TaxId: 1390]}
Length = 281
Score = 31.8 bits (71), Expect = 0.075
Identities = 23/169 (13%), Positives = 44/169 (26%), Gaps = 24/169 (14%)
Query: 101 PGELATRAFIEGVTRGREGKGSIFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQ 160
G + A ++ G + V A+GN G + ++ + + Q
Sbjct: 126 LGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQ 185
Query: 161 VPWYSEACSSTLATTYSSGSSFEHQVVTTDLHHDCTSNHTG---LAPLAAGICAWPSRPN 217
+S + + L + + G +P AG A +
Sbjct: 186 RASFSSVGPELDVMAPGVS-------IQSTLPGNKYGAYNGTSMASPHVAGAAALILSKH 238
Query: 218 PASRGVTCRHIVVAPARPANLRAPDWATNGVGRNVSHSFGYGLMDATAM 266
P R + S +G GL++ A
Sbjct: 239 PNWTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAA 273
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
[TaxId: 2026]}
Length = 279
Score = 26.2 bits (56), Expect = 4.5
Identities = 17/144 (11%), Positives = 36/144 (25%), Gaps = 23/144 (15%)
Query: 123 IFVWASGNGGRDHDNCNCDGYTNSIWTLSTSSATETGQVPWYSEACSSTLATTYSSGSSF 182
+ V A+GN G N ++ +S + +S S
Sbjct: 156 VVVAAAGNAGNTAPNYPAYYS----NAIAVASTDQNDNKSSFSTYGSWVDVAAPG----S 207
Query: 183 EHQVVTTDLHHDCTSNHTGLAPLAAGICAWPSRPNPASRGVTCRHIVVAPARPANLRAPD 242
+ S + P AG+ + ++ + R + A +
Sbjct: 208 SIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGRSASNI--RAAIENTADKIS----- 260
Query: 243 WATNGVGRNVSHSFGYGLMDATAM 266
+ G ++A
Sbjct: 261 --------GTGTYWAKGRVNAYKA 276
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.418
Gapped
Lambda K H
0.267 0.0380 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,007,018
Number of extensions: 44517
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 13
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.7 bits)