Query psy15974
Match_columns 165
No_of_seqs 110 out of 154
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 17:47:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10558 MTP18: Mitochondrial 100.0 1.3E-65 2.8E-70 409.1 6.8 131 18-148 12-150 (150)
2 KOG3945|consensus 100.0 3.8E-57 8.2E-62 354.6 2.5 140 26-165 1-149 (149)
3 PF04648 MF_alpha: Yeast matin 24.5 38 0.00081 17.3 0.7 9 8-16 5-13 (13)
4 COG4362 Nitric oxide synthase, 21.2 35 0.00075 31.0 0.2 15 23-37 120-134 (355)
5 KOG2181|consensus 20.1 49 0.0011 30.6 0.9 25 6-30 90-123 (415)
6 PRK10858 nitrogen regulatory p 20.1 59 0.0013 24.7 1.3 21 90-110 16-36 (112)
7 KOG3019|consensus 17.3 49 0.0011 29.7 0.3 42 82-127 53-96 (315)
8 PRK06025 acetyl-CoA acetyltran 17.1 78 0.0017 29.3 1.6 23 95-117 79-101 (417)
9 PRK10665 nitrogen regulatory p 16.9 89 0.0019 23.7 1.6 20 90-109 16-35 (112)
10 PF10447 EXOSC1: Exosome compo 16.9 54 0.0012 23.9 0.4 40 2-52 20-59 (82)
No 1
>PF10558 MTP18: Mitochondrial 18 KDa protein (MTP18) ; InterPro: IPR019560 This family of proteins are mitochondrial 18kDa proteins that are often misannotated as carbonic anhydrases. It was shown that knockdown of MTP18 protein results in a cytochrome c release from mitochondria and consequently leads to apoptosis []. Over expression studies suggest that MTP18 is required for mitochondrial fission [].
Probab=100.00 E-value=1.3e-65 Score=409.06 Aligned_cols=131 Identities=45% Similarity=0.661 Sum_probs=126.1
Q ss_pred hhhhhhhhhhhhhhchhhhhccccccccceeeeeeeEEEEEEecccchhHHHHhhhccc-----ccchhHhHHHHHHHHH
Q psy15974 18 LDRQIVSIFIFTRYANEVGEAFRAVVHRQVVNASYGIASLYVLADVTAKTIQAWHSTEH-----NAGRVAKIGIDALLWQ 92 (165)
Q Consensus 18 ~~t~~~s~~RYlgYaneVGEAFRpvvp~~~V~asYgVa~~Yvl~D~~~kg~ka~~~~~~-----~~~~~~~~~~d~~vwQ 92 (165)
+||++++++|||||||||||||||++|+++|++||||||+||+||++|||||++++++. +.++++.+++||++||
T Consensus 12 ~rt~~~s~~RYlgYaneVGEAFRp~vp~~~V~~sYgVa~~Yvl~D~~~kg~ka~~~~~~~~~~~~~~~~~~~~~d~~vwQ 91 (150)
T PF10558_consen 12 LRTILLSSVRYLGYANEVGEAFRPVVPPWVVRASYGVAWAYVLADTSDKGYKAYKKNQGEPSTPKATDVRVAAVDTLVWQ 91 (150)
T ss_pred HHHHHhhcchhhhhhchhhhhccccCccceeeeeeeeeeeeeeeehhhhHHHHHHcccCcccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988876 3457999999999999
Q ss_pred HhhhhhcCceEEehhhHHHHHHHhh--ccc-cceeeeeeceeeeccccccchhHHHHHH
Q psy15974 93 SLASVAVPGLAINRICYLSRALFAR--WRQ-GQVATVVTGLVSIPCVIHPIDWAVTEAM 148 (165)
Q Consensus 93 ~lASv~iPgfTIh~vv~~S~~~l~~--~~~-r~w~pT~iGLa~IP~Ii~PID~~Vd~~m 148 (165)
++|||+||||||||+|++|+++|++ ++. |||+||++||++|||||||||++||++|
T Consensus 92 ~lASv~iPgfTIn~vv~~S~~~l~~~k~~~~rkw~pt~iGLa~IP~Ii~piD~~Vd~~m 150 (150)
T PF10558_consen 92 SLASVAIPGFTINRVVAYSGRLLKNAKNPLLRKWGPTAIGLAAIPFIIHPIDRPVDHAM 150 (150)
T ss_pred HHHHhhCCcceeeHHHHHHHHHHHhCCCCcccchHHHHHHHHHHcccCccCcchhhccC
Confidence 9999999999999999999999998 777 9999999999999999999999999987
No 2
>KOG3945|consensus
Probab=100.00 E-value=3.8e-57 Score=354.55 Aligned_cols=140 Identities=40% Similarity=0.649 Sum_probs=129.6
Q ss_pred hhhhhhchhhhhccccccccceeeeeeeEEEEEEecccchhHHHHhhhcc----cccchhHhHHHHHHHHHHhhhhhcCc
Q psy15974 26 FIFTRYANEVGEAFRAVVHRQVVNASYGIASLYVLADVTAKTIQAWHSTE----HNAGRVAKIGIDALLWQSLASVAVPG 101 (165)
Q Consensus 26 ~RYlgYaneVGEAFRpvvp~~~V~asYgVa~~Yvl~D~~~kg~ka~~~~~----~~~~~~~~~~~d~~vwQ~lASv~iPg 101 (165)
.||+||+|||||||||++|+.+|++|||||++||++|++|||.+.+.... .+.++++.+++|+++||++|||+|||
T Consensus 1 ~Ry~gysneigeafr~Lv~~~vV~~SYgvA~gYV~aD~iDKgl~~~~e~~S~eaeks~~Vava~vDtf~WQ~lASVaIPG 80 (149)
T KOG3945|consen 1 IRYMGYSNEIGEAFRPLVPKSVVAASYGVAIGYVCADTIDKGLRLQMEGASSEAEKSREVAVAGVDTFCWQMLASVAIPG 80 (149)
T ss_pred CccchhhhhHHHHHHhhcchhhhhhhhhhhhhhhhHHHHhHHHHHhcccCCccccccceeeeeehhHHHHHHHHHhhCCc
Confidence 49999999999999999999999999999999999999999988764432 26788999999999999999999999
Q ss_pred eEEehhhHHHHHHHhh---ccc--cceeeeeeceeeeccccccchhHHHHHHhhhccccccccCCCCCC
Q psy15974 102 LAINRICYLSRALFAR---WRQ--GQVATVVTGLVSIPCVIHPIDWAVTEAMDLTVRPYLLHVRVNKEE 165 (165)
Q Consensus 102 fTIh~vv~~S~~~l~~---~~~--r~w~pT~iGLa~IP~Ii~PID~~Vd~~md~t~rk~~~~~~~~~~~ 165 (165)
|||||+|++|..+|++ ||+ |||.||++||+.||+||||||+.||.+||+++||.+++.+-|..|
T Consensus 81 ftINR~c~as~~lL~kaTklP~~vrKwt~T~lGLatIP~IiHPIDs~Vd~lmD~t~RK~~~ep~i~ake 149 (149)
T KOG3945|consen 81 FTINRICWASKTLLSKATKLPMPVRKWTPTLLGLATIPLIIHPIDSMVDRLMDATYRKTVREPGIPAKE 149 (149)
T ss_pred eeehhHHHHHHHHHHhcccCCccHhhhhHHHHhhhccceEeechHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999999998 676 999999999999999999999999999999999999887766543
No 3
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=24.51 E-value=38 Score=17.31 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=7.4
Q ss_pred ccCCCCCcc
Q psy15974 8 CFDNGAPKY 16 (165)
Q Consensus 8 ~~~~g~~~~ 16 (165)
.|+.|+|-|
T Consensus 5 ~~~~GqP~Y 13 (13)
T PF04648_consen 5 RLSPGQPMY 13 (13)
T ss_pred eccCCCcCC
Confidence 578999976
No 4
>COG4362 Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism]
Probab=21.17 E-value=35 Score=30.99 Aligned_cols=15 Identities=20% Similarity=0.693 Sum_probs=12.2
Q ss_pred hhhhhhhhhchhhhh
Q psy15974 23 VSIFIFTRYANEVGE 37 (165)
Q Consensus 23 ~s~~RYlgYaneVGE 37 (165)
.-..||.||-||||.
T Consensus 120 ~QLIRYAgye~digD 134 (355)
T COG4362 120 PQLIRYAGYENDIGD 134 (355)
T ss_pred HHHHhhhcccccCCC
Confidence 356899999999774
No 5
>KOG2181|consensus
Probab=20.08 E-value=49 Score=30.62 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=17.8
Q ss_pred ccccCCCCCcch---------hhhhhhhhhhhhh
Q psy15974 6 VNCFDNGAPKYF---------LDRQIVSIFIFTR 30 (165)
Q Consensus 6 ~~~~~~g~~~~~---------~~t~~~s~~RYlg 30 (165)
|+|+|+|+.+|- +|+|.++..|=|=
T Consensus 90 ~fclEdgpkRYtIgRtlIPrfFrsIfegG~~eLy 123 (415)
T KOG2181|consen 90 VFCLEDGPKRYTIGRTLIPRFFRSIFEGGMRELY 123 (415)
T ss_pred EEEecCCcceeeeccchhHHHHHHHHhcchhhhh
Confidence 789999999997 4555555555443
No 6
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=20.06 E-value=59 Score=24.70 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=16.6
Q ss_pred HHHHhhhhhcCceEEehhhHH
Q psy15974 90 LWQSLASVAVPGLAINRICYL 110 (165)
Q Consensus 90 vwQ~lASv~iPgfTIh~vv~~ 110 (165)
+=|+|..+++||+|+.++--.
T Consensus 16 v~~aL~~~G~~g~Tv~~V~G~ 36 (112)
T PRK10858 16 VREALAEVGITGMTVTEVKGF 36 (112)
T ss_pred HHHHHHHCCCCeEEEEEeEec
Confidence 456788899999999987443
No 7
>KOG3019|consensus
Probab=17.27 E-value=49 Score=29.71 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHHhhhhhcCceEEehhhHHHHHHHhh--ccccceeeee
Q psy15974 82 AKIGIDALLWQSLASVAVPGLAINRICYLSRALFAR--WRQGQVATVV 127 (165)
Q Consensus 82 ~~~~~d~~vwQ~lASv~iPgfTIh~vv~~S~~~l~~--~~~r~w~pT~ 127 (165)
++-...+.+|.-++--+||+ ++++.+...-++ .|+|+|.|+.
T Consensus 53 R~pg~~ritw~el~~~Gip~----sc~a~vna~g~n~l~P~rRWsp~f 96 (315)
T KOG3019|consen 53 RSPGKARITWPELDFPGIPI----SCVAGVNAVGNNALLPIRRWSPEF 96 (315)
T ss_pred cCCCCcccccchhcCCCCce----ehHHHHhhhhhhccCchhhcCHHH
Confidence 34467889999998888887 555555555555 6779999863
No 8
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=17.13 E-value=78 Score=29.31 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=18.4
Q ss_pred hhhhcCceEEehhhHHHHHHHhh
Q psy15974 95 ASVAVPGLAINRICYLSRALFAR 117 (165)
Q Consensus 95 ASv~iPgfTIh~vv~~S~~~l~~ 117 (165)
=..-+||+||||.|.-+-..+..
T Consensus 79 lp~~vp~~tvnr~C~Sgl~ai~~ 101 (417)
T PRK06025 79 YDIKASGVTLDRFCGGGITSVNL 101 (417)
T ss_pred CCCCCCeeeeccccchHHHHHHH
Confidence 34678999999999988777654
No 9
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=16.92 E-value=89 Score=23.72 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=15.6
Q ss_pred HHHHhhhhhcCceEEehhhH
Q psy15974 90 LWQSLASVAVPGLAINRICY 109 (165)
Q Consensus 90 vwQ~lASv~iPgfTIh~vv~ 109 (165)
+-++|..+++||+|+.++-=
T Consensus 16 v~~AL~~~G~~g~Tv~~V~G 35 (112)
T PRK10665 16 VREALSSIGIQGLTVTEVKG 35 (112)
T ss_pred HHHHHHHCCCCcEEEEeeEe
Confidence 34668888999999988743
No 10
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=16.91 E-value=54 Score=23.88 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=14.0
Q ss_pred CCccccccCCCCCcchhhhhhhhhhhhhhhchhhhhccccccccceeeeee
Q psy15974 2 SHCNVNCFDNGAPKYFLDRQIVSIFIFTRYANEVGEAFRAVVHRQVVNASY 52 (165)
Q Consensus 2 ~~~~~~~~~~g~~~~~~~t~~~s~~RYlgYaneVGEAFRpvvp~~~V~asY 52 (165)
-+|++.|.+|.+..-- -+=..+++|.|+.+++..=|++++
T Consensus 20 a~v~Il~v~~~~~~~~-----------~~~~~~l~~~f~GiIR~~DVR~te 59 (82)
T PF10447_consen 20 AKVEILCVEGKGNDSI-----------NAGDRPLKEPFQGIIRKQDVRATE 59 (82)
T ss_dssp EEEEEEES---------------------SSS----SS-S-EEEEGGGT-S
T ss_pred EEEEEEEEEecccccc-----------ccCCcccccccEEEEEeeeecccc
Confidence 3788888866553000 001234555666666655555443
Done!