Query psy15974
Match_columns 165
No_of_seqs 110 out of 154
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:47:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3h_A Methionine aminopeptida 25.7 62 0.0021 27.2 3.9 52 85-137 196-252 (329)
2 1wgn_A UBAP1, ubiquitin associ 24.6 26 0.00087 24.0 1.1 40 86-150 18-57 (63)
3 3f1p_A Endothelial PAS domain- 21.8 31 0.0011 21.8 1.1 24 23-46 26-51 (117)
4 3f1p_B ARYL hydrocarbon recept 21.7 35 0.0012 21.8 1.3 23 23-45 29-53 (121)
5 1wn1_A Dipeptidase; prolidase, 20.8 78 0.0027 26.2 3.5 65 22-118 214-278 (356)
6 1qxy_A Methionyl aminopeptidas 20.6 87 0.003 24.3 3.6 47 85-132 125-174 (252)
7 2zsg_A Aminopeptidase P, putat 19.8 89 0.003 25.4 3.6 33 86-119 250-282 (359)
8 1o0x_A Methionine aminopeptida 18.7 96 0.0033 24.5 3.5 44 94-137 146-194 (262)
9 2vlg_A Sporulation kinase A; h 17.9 42 0.0015 22.8 1.1 24 23-46 26-51 (111)
10 1wy2_A XAA-Pro dipeptidase; st 16.6 1E+02 0.0035 25.5 3.3 32 85-117 243-274 (351)
No 1
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Probab=25.74 E-value=62 Score=27.16 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhhhcCceEEehhhHHHHHHHhh--cc-ccceeeeeeceee--ecccc
Q psy15974 85 GIDALLWQSLASVAVPGLAINRICYLSRALFAR--WR-QGQVATVVTGLVS--IPCVI 137 (165)
Q Consensus 85 ~~d~~vwQ~lASv~iPgfTIh~vv~~S~~~l~~--~~-~r~w~pT~iGLa~--IP~Ii 137 (165)
++..+...+++ .+-||.+.+.+-+.....+++ .. .+.+..=+||+.+ -|.|+
T Consensus 196 ~v~~a~~~ai~-~~kPG~~~~dI~~~~~~~~~~~G~~~~~~~~GHGIG~~~HE~P~i~ 252 (329)
T 2b3h_A 196 TTYECLMQAID-AVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVP 252 (329)
T ss_dssp HHHHHHHHHHH-TCCTTCBTTHHHHHHHHHHHHTTCEECCSCCEEECSSSSSEEEEEC
T ss_pred HHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHcCCCccCCcccCCcCcccccCCccc
Confidence 44444444444 557999999999999888877 33 2677777788764 35544
No 2
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.62 E-value=26 Score=23.97 Aligned_cols=40 Identities=5% Similarity=0.022 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhhhcCceEEehhhHHHHHHHhhccccceeeeeeceeeeccccccchhHHHHHHhh
Q psy15974 86 IDALLWQSLASVAVPGLAINRICYLSRALFARWRQGQVATVVTGLVSIPCVIHPIDWAVTEAMDL 150 (165)
Q Consensus 86 ~d~~vwQ~lASv~iPgfTIh~vv~~S~~~l~~~~~r~w~pT~iGLa~IP~Ii~PID~~Vd~~md~ 150 (165)
.+.-.-++|.|| ||+-+. +.++||+.. .=||+++||+|.+
T Consensus 18 se~e~V~~LvsM---GFs~~q----A~kALKat~------------------~NvErAaDWLFSH 57 (63)
T 1wgn_A 18 SERQCVETVVNM---GYSYEC----VLRAMKKKG------------------ENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHH---HCCHHH----HHHHHHHHC------------------SCHHHHHHHHHHH
T ss_pred chHHHHHHHHHc---CCCHHH----HHHHHHHcC------------------CCHHHHHHHHHhC
Confidence 344445667788 566555 666676621 1378999999875
No 3
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=21.81 E-value=31 Score=21.81 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=17.8
Q ss_pred hhhhhhhhhchh--hhhccccccccc
Q psy15974 23 VSIFIFTRYANE--VGEAFRAVVHRQ 46 (165)
Q Consensus 23 ~s~~RYlgYane--VGEAFRpvvp~~ 46 (165)
.+..+.+||+.| +|..+.-++||-
T Consensus 26 ~~~~~~~Gy~~~el~g~~~~~~~~p~ 51 (117)
T 3f1p_A 26 DRITELIGYHPEELLGRSAYEFYHAL 51 (117)
T ss_dssp THHHHHHCCCHHHHTTSBGGGGBCGG
T ss_pred cChhhhhCCCHHHHcCCchhheECHH
Confidence 367789999877 777777776653
No 4
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=21.72 E-value=35 Score=21.80 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=17.1
Q ss_pred hhhhhhhhhchh--hhhcccccccc
Q psy15974 23 VSIFIFTRYANE--VGEAFRAVVHR 45 (165)
Q Consensus 23 ~s~~RYlgYane--VGEAFRpvvp~ 45 (165)
.+..+++||+.| +|..|..++||
T Consensus 29 ~~~~~~~G~~~~el~g~~~~~~i~p 53 (121)
T 3f1p_B 29 HRCVATVGYQPQELLGKNIVEFCHP 53 (121)
T ss_dssp TTHHHHHSCCGGGTTTSBGGGGBCT
T ss_pred cchhhhhCCChHHHcCCCHHHeECH
Confidence 367789999876 67777766665
No 5
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Probab=20.76 E-value=78 Score=26.25 Aligned_cols=65 Identities=6% Similarity=0.125 Sum_probs=39.2
Q ss_pred hhhhhhhhhhchhhhhccccccccceeeeeeeEEEEEEecccchhHHHHhhhcccccchhHhHHHHHHHHHHhhhhhcCc
Q psy15974 22 IVSIFIFTRYANEVGEAFRAVVHRQVVNASYGIASLYVLADVTAKTIQAWHSTEHNAGRVAKIGIDALLWQSLASVAVPG 101 (165)
Q Consensus 22 ~~s~~RYlgYaneVGEAFRpvvp~~~V~asYgVa~~Yvl~D~~~kg~ka~~~~~~~~~~~~~~~~d~~vwQ~lASv~iPg 101 (165)
++...+|-||.+|+.. ++++|....+-.+.| .++..+....++. .-||
T Consensus 214 iD~g~~~~gy~sD~tR-------------------T~~vG~~~~~~~~~~------------~~v~~a~~~~~~~-~~pG 261 (356)
T 1wn1_A 214 LDYGARWKGYCSDITR-------------------TIGLGELDERLVKIY------------EVVKDAQESAFKA-VREG 261 (356)
T ss_dssp EEECEEETTEECCEEE-------------------EEESSSCCHHHHHHH------------HHHHHHHHHHHHH-CBTT
T ss_pred EEEEEEECCEEeccEE-------------------EEEcCCCCHHHHHHH------------HHHHHHHHHHHHH-hcCC
Confidence 3466667777777543 334455444444443 2334444444444 4799
Q ss_pred eEEehhhHHHHHHHhhc
Q psy15974 102 LAINRICYLSRALFARW 118 (165)
Q Consensus 102 fTIh~vv~~S~~~l~~~ 118 (165)
.+...+-+.+...+.+.
T Consensus 262 ~~~~~i~~~~~~~~~~~ 278 (356)
T 1wn1_A 262 IKAKDVDSRAREVISKA 278 (356)
T ss_dssp SBHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHc
Confidence 99999988888888773
No 6
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A*
Probab=20.63 E-value=87 Score=24.28 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhhhcCceEEehhhHHHHHHHhh--ccc-cceeeeeeceee
Q psy15974 85 GIDALLWQSLASVAVPGLAINRICYLSRALFAR--WRQ-GQVATVVTGLVS 132 (165)
Q Consensus 85 ~~d~~vwQ~lASv~iPgfTIh~vv~~S~~~l~~--~~~-r~w~pT~iGLa~ 132 (165)
++..+....++ ++-||.+...+-+.+...+++ +.. +...-=.+|+.+
T Consensus 125 ~~~~a~~~~i~-~~kpG~~~~~i~~~~~~~~~~~g~~~~~~~~GHgiG~~~ 174 (252)
T 1qxy_A 125 VATMAFENAIA-KVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSL 174 (252)
T ss_dssp HHHHHHHHHHT-TCCTTCBTHHHHHHHHHHHHHTTCEECTTCCEEECSSSS
T ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHcCCEecCCccccccCccc
Confidence 34444444444 557999999999999888877 332 555556677753
No 7
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Probab=19.77 E-value=89 Score=25.43 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhhhcCceEEehhhHHHHHHHhhcc
Q psy15974 86 IDALLWQSLASVAVPGLAINRICYLSRALFARWR 119 (165)
Q Consensus 86 ~d~~vwQ~lASv~iPgfTIh~vv~~S~~~l~~~~ 119 (165)
+..+...+++ ..-||.+...+-+.+...+.+..
T Consensus 250 v~~~~~~~~~-~~~pG~~~~~v~~~~~~~~~~~g 282 (359)
T 2zsg_A 250 VLEAQERALK-IAKAGVTGKLLDSVAREFIREKG 282 (359)
T ss_dssp HHHHHHHHHH-HCCTTCBHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HccCCCCHHHHHHHHHHHHHHcC
Confidence 3333333344 44799999999999988887733
No 8
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1
Probab=18.67 E-value=96 Score=24.52 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=29.9
Q ss_pred hhhhhcCceEEehhhHHHHHHHhh--cc-ccceeeeeeceeee--cccc
Q psy15974 94 LASVAVPGLAINRICYLSRALFAR--WR-QGQVATVVTGLVSI--PCVI 137 (165)
Q Consensus 94 lASv~iPgfTIh~vv~~S~~~l~~--~~-~r~w~pT~iGLa~I--P~Ii 137 (165)
..+.+-||.+...+-..+...+++ +. .+.+.-=.+|+.+- |.|+
T Consensus 146 ~i~~~kpG~~~~~v~~~~~~~~~~~G~~~~~~~~GHgiG~~~he~p~i~ 194 (262)
T 1o0x_A 146 AIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIP 194 (262)
T ss_dssp HHHTCCTTSBHHHHHHHHHHHHHHTTCEECCSSCEEECSSSSSEEEEEC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHcCCcccCCcccCcccccccCCCccC
Confidence 344567999999999999888877 32 25566666777542 5444
No 9
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=17.94 E-value=42 Score=22.82 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=18.6
Q ss_pred hhhhhhhhhchh--hhhccccccccc
Q psy15974 23 VSIFIFTRYANE--VGEAFRAVVHRQ 46 (165)
Q Consensus 23 ~s~~RYlgYane--VGEAFRpvvp~~ 46 (165)
.+..|++||+.| +|.++..++||-
T Consensus 26 ~~~~~~lGy~~~el~G~~~~~~ihp~ 51 (111)
T 2vlg_A 26 ANSKLHLGYLQGEMIGSFLKTFLHEE 51 (111)
T ss_dssp TTHHHHHSCCHHHHTTSBGGGGBCGG
T ss_pred hHHHHHhCCCHHHHcCCcHHHeECHh
Confidence 478899999876 687777777764
No 10
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Probab=16.62 E-value=1e+02 Score=25.46 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhhhcCceEEehhhHHHHHHHhh
Q psy15974 85 GIDALLWQSLASVAVPGLAINRICYLSRALFAR 117 (165)
Q Consensus 85 ~~d~~vwQ~lASv~iPgfTIh~vv~~S~~~l~~ 117 (165)
++..+....+ +..-||.+...+-+.+...+.+
T Consensus 243 ~v~~a~~~~~-~~~~pG~~~~~v~~~~~~~~~~ 274 (351)
T 1wy2_A 243 IVLEAQKKAV-ESAKPGITAKELDSIARNIIAE 274 (351)
T ss_dssp HHHHHHHHHH-HHCCTTCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHH
Confidence 3333333334 3457999999998888888877
Done!